Correlation between gene mutation status and molecular subtypes
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 147 genes and 10 molecular subtypes across 278 patients, 4 significant findings detected with P value < 0.05 and Q value < 0.25.

  • NRAS mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • BRAF mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 147 genes and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 4 significant findings detected.

Clinical
Features 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
BRAF 140 (50%) 138 1e-05
(0.0147) 		0.0123
(1.00) 		0.503
(1.00) 		0.623
(1.00) 		0.00794
(1.00) 		1e-05
(0.0147) 		0.00059
(0.863) 		0.234
(1.00) 		0.00014
(0.205) 		0.0644
(1.00)
NRAS 86 (31%) 192 0.00062
(0.906) 		0.00875
(1.00) 		0.428
(1.00) 		0.237
(1.00) 		0.799
(1.00) 		0.233
(1.00) 		0.485
(1.00) 		0.36
(1.00) 		0.0001
(0.147) 		0.159
(1.00)
TP53 47 (17%) 231 0.882
(1.00) 		0.00907
(1.00) 		0.25
(1.00) 		0.362
(1.00) 		0.114
(1.00) 		0.284
(1.00) 		0.687
(1.00) 		0.876
(1.00) 		0.464
(1.00) 		0.64
(1.00)
CDKN2A 41 (15%) 237 0.0933
(1.00) 		0.108
(1.00) 		0.153
(1.00) 		0.688
(1.00) 		1
(1.00) 		0.706
(1.00) 		0.786
(1.00) 		0.521
(1.00) 		0.819
(1.00) 		0.627
(1.00)
RPS27 24 (9%) 254 0.928
(1.00) 		0.741
(1.00) 		0.711
(1.00) 		0.925
(1.00) 		0.688
(1.00) 		0.766
(1.00) 		0.703
(1.00) 		0.916
(1.00) 		0.763
(1.00) 		1
(1.00)
MRPS31 19 (7%) 259 0.201
(1.00) 		0.0491
(1.00) 		0.964
(1.00) 		0.871
(1.00) 		0.224
(1.00) 		0.134
(1.00) 		0.681
(1.00) 		0.232
(1.00) 		0.375
(1.00) 		0.176
(1.00)
NF1 38 (14%) 240 0.212
(1.00) 		0.373
(1.00) 		0.544
(1.00) 		0.558
(1.00) 		0.707
(1.00) 		0.188
(1.00) 		0.296
(1.00) 		0.647
(1.00) 		0.0575
(1.00) 		0.238
(1.00)
RAC1 20 (7%) 258 0.106
(1.00) 		0.215
(1.00) 		0.6
(1.00) 		0.429
(1.00) 		0.808
(1.00) 		0.956
(1.00) 		0.275
(1.00) 		0.25
(1.00) 		0.953
(1.00) 		0.55
(1.00)
ARID2 35 (13%) 243 0.897
(1.00) 		0.0558
(1.00) 		0.671
(1.00) 		0.784
(1.00) 		0.899
(1.00) 		0.2
(1.00) 		0.441
(1.00) 		0.197
(1.00) 		1
(1.00) 		0.248
(1.00)
C15ORF23 19 (7%) 259 0.954
(1.00) 		0.00761
(1.00) 		0.714
(1.00) 		0.771
(1.00) 		0.475
(1.00) 		0.342
(1.00) 		0.826
(1.00) 		0.674
(1.00) 		0.895
(1.00) 		0.795
(1.00)
PTEN 23 (8%) 255 0.103
(1.00) 		0.123
(1.00) 		0.0181
(1.00) 		0.0837
(1.00) 		0.201
(1.00) 		0.0737
(1.00) 		0.123
(1.00) 		0.131
(1.00) 		0.0372
(1.00) 		0.332
(1.00)
NOTCH2NL 15 (5%) 263 0.841
(1.00) 		0.799
(1.00) 		0.613
(1.00) 		0.138
(1.00) 		0.0234
(1.00) 		0.232
(1.00) 		0.454
(1.00) 		0.0868
(1.00) 		0.564
(1.00) 		0.101
(1.00)
MAP2K1 13 (5%) 265 0.0902
(1.00) 		0.00118
(1.00) 		0.365
(1.00) 		0.0215
(1.00) 		0.301
(1.00) 		0.137
(1.00) 		0.0687
(1.00) 		0.893
(1.00) 		0.0278
(1.00) 		0.0922
(1.00)
PPP6C 20 (7%) 258 0.957
(1.00) 		0.533
(1.00) 		0.49
(1.00) 		0.302
(1.00) 		0.88
(1.00) 		0.665
(1.00) 		0.341
(1.00) 		0.0541
(1.00) 		0.722
(1.00) 		0.232
(1.00)
IDH1 16 (6%) 262 0.58
(1.00) 		0.15
(1.00) 		0.628
(1.00) 		0.167
(1.00) 		0.374
(1.00) 		0.476
(1.00) 		0.109
(1.00) 		0.55
(1.00) 		0.158
(1.00) 		0.0397
(1.00)
PDE1A 39 (14%) 239 0.565
(1.00) 		0.472
(1.00) 		0.718
(1.00) 		0.626
(1.00) 		0.0103
(1.00) 		0.0338
(1.00) 		0.781
(1.00) 		0.0556
(1.00) 		0.858
(1.00) 		0.486
(1.00)
HMGCR 11 (4%) 267 0.58
(1.00) 		0.427
(1.00) 		0.337
(1.00) 		0.643
(1.00) 		0.584
(1.00) 		0.924
(1.00) 		0.545
(1.00) 		0.168
(1.00) 		0.0251
(1.00) 		0.549
(1.00)
PHGDH 12 (4%) 266 0.091
(1.00) 		0.314
(1.00) 		0.492
(1.00) 		0.274
(1.00) 		1
(1.00) 		0.699
(1.00) 		0.769
(1.00) 		0.375
(1.00) 		0.702
(1.00) 		0.629
(1.00)
SLC38A4 34 (12%) 244 0.0554
(1.00) 		0.158
(1.00) 		0.459
(1.00) 		0.833
(1.00) 		0.00735
(1.00) 		0.0342
(1.00) 		0.982
(1.00) 		0.603
(1.00) 		0.334
(1.00) 		0.401
(1.00)
CDK4 7 (3%) 271 1
(1.00) 		0.495
(1.00) 		0.0437
(1.00) 		0.915
(1.00) 		1
(1.00) 		0.487
(1.00) 		0.834
(1.00) 		0.624
(1.00) 		0.676
(1.00) 		0.226
(1.00)
FAM58A 5 (2%) 273 0.264
(1.00) 		0.857
(1.00) 		0.908
(1.00) 		0.832
(1.00) 		0.198
(1.00) 		0.603
(1.00) 		0.438
(1.00) 		0.00684
(1.00) 		0.0016
(1.00) 		0.515
(1.00)
EMG1 9 (3%) 269 0.757
(1.00) 		0.835
(1.00) 		0.531
(1.00) 		0.271
(1.00) 		0.532
(1.00) 		0.271
(1.00) 		0.54
(1.00) 		1
(1.00) 		1
(1.00) 		0.184
(1.00)
RQCD1 9 (3%) 269 0.2
(1.00) 		0.161
(1.00) 		0.0854
(1.00) 		0.929
(1.00) 		0.53
(1.00) 		0.915
(1.00) 		0.514
(1.00) 		0.67
(1.00) 		0.0317
(1.00) 		0.896
(1.00)
HSD11B1 14 (5%) 264 0.48
(1.00) 		0.194
(1.00) 		0.685
(1.00) 		0.183
(1.00) 		0.189
(1.00) 		0.238
(1.00) 		0.52
(1.00) 		0.96
(1.00) 		0.871
(1.00) 		0.631
(1.00)
DMC1 12 (4%) 266 0.372
(1.00) 		0.315
(1.00) 		0.129
(1.00) 		0.301
(1.00) 		0.0123
(1.00) 		0.7
(1.00) 		0.0921
(1.00) 		0.924
(1.00) 		0.0233
(1.00) 		0.00978
(1.00)
NRK 44 (16%) 234 0.111
(1.00) 		0.314
(1.00) 		0.513
(1.00) 		0.65
(1.00) 		0.25
(1.00) 		0.32
(1.00) 		0.709
(1.00) 		0.467
(1.00) 		0.0544
(1.00) 		1
(1.00)
TAF1A 13 (5%) 265 0.937
(1.00) 		0.77
(1.00) 		0.94
(1.00) 		0.939
(1.00) 		1
(1.00) 		1
(1.00) 		0.52
(1.00) 		1
(1.00) 		0.88
(1.00) 		0.834
(1.00)
OXA1L 8 (3%) 270 0.608
(1.00) 		0.542
(1.00) 		1
(1.00) 		0.547
(1.00) 		0.439
(1.00) 		0.6
(1.00) 		0.557
(1.00) 		0.4
(1.00) 		0.0869
(1.00) 		0.213
(1.00)
COL3A1 57 (21%) 221 0.467
(1.00) 		0.981
(1.00) 		0.954
(1.00) 		0.15
(1.00) 		0.484
(1.00) 		0.193
(1.00) 		0.782
(1.00) 		0.343
(1.00) 		0.926
(1.00) 		0.597
(1.00)
TCHHL1 39 (14%) 239 0.14
(1.00) 		0.434
(1.00) 		0.0361
(1.00) 		0.187
(1.00) 		0.252
(1.00) 		0.146
(1.00) 		0.923
(1.00) 		0.779
(1.00) 		0.546
(1.00) 		0.614
(1.00)
IL5RA 17 (6%) 261 0.699
(1.00) 		0.814
(1.00) 		0.773
(1.00) 		0.226
(1.00) 		0.636
(1.00) 		0.446
(1.00) 		0.449
(1.00) 		0.564
(1.00) 		0.267
(1.00) 		0.421
(1.00)
NBPF7 13 (5%) 265 0.721
(1.00) 		0.723
(1.00) 		0.795
(1.00) 		0.492
(1.00) 		0.176
(1.00) 		0.159
(1.00) 		0.0955
(1.00) 		0.203
(1.00) 		0.0123
(1.00) 		0.0389
(1.00)
KEL 37 (13%) 241 0.0144
(1.00) 		0.285
(1.00) 		0.775
(1.00) 		0.658
(1.00) 		0.0019
(1.00) 		0.0153
(1.00) 		0.252
(1.00) 		0.54
(1.00) 		0.409
(1.00) 		0.0957
(1.00)
C7ORF58 35 (13%) 243 0.275
(1.00) 		0.244
(1.00) 		0.0895
(1.00) 		0.00262
(1.00) 		0.766
(1.00) 		0.417
(1.00) 		0.501
(1.00) 		0.699
(1.00) 		0.0716
(1.00) 		0.438
(1.00)
NBPF1 39 (14%) 239 0.605
(1.00) 		0.181
(1.00) 		0.0336
(1.00) 		0.7
(1.00) 		0.323
(1.00) 		0.234
(1.00) 		0.172
(1.00) 		0.676
(1.00) 		0.0331
(1.00) 		0.487
(1.00)
TMEM216 8 (3%) 270 0.202
(1.00) 		0.432
(1.00) 		0.0574
(1.00) 		0.625
(1.00) 		0.904
(1.00) 		0.819
(1.00) 		0.291
(1.00) 		0.258
(1.00) 		0.397
(1.00) 		0.484
(1.00)
DOM3Z 7 (3%) 271 1
(1.00) 		0.435
(1.00) 		1
(1.00) 		0.096
(1.00) 		0.631
(1.00) 		0.267
(1.00) 		0.521
(1.00) 		0.384
(1.00) 		0.637
(1.00) 		0.205
(1.00)
BCLAF1 48 (17%) 230 0.63
(1.00) 		0.277
(1.00) 		0.224
(1.00) 		0.829
(1.00) 		1
(1.00) 		1
(1.00) 		0.96
(1.00) 		0.611
(1.00) 		0.549
(1.00) 		0.509
(1.00)
ZFX 14 (5%) 264 0.484
(1.00) 		0.694
(1.00) 		0.53
(1.00) 		1
(1.00) 		0.0284
(1.00) 		0.121
(1.00) 		0.363
(1.00) 		0.551
(1.00) 		0.0972
(1.00) 		0.0685
(1.00)
SAG 11 (4%) 267 0.372
(1.00) 		0.684
(1.00) 		0.51
(1.00) 		0.166
(1.00) 		0.686
(1.00) 		0.275
(1.00) 		0.555
(1.00) 		0.159
(1.00) 		0.86
(1.00) 		0.297
(1.00)
OR51S1 30 (11%) 248 0.806
(1.00) 		0.94
(1.00) 		0.492
(1.00) 		0.315
(1.00) 		0.693
(1.00) 		0.798
(1.00) 		0.104
(1.00) 		0.763
(1.00) 		0.129
(1.00) 		0.297
(1.00)
USP17L2 22 (8%) 256 0.373
(1.00) 		0.135
(1.00) 		0.812
(1.00) 		0.573
(1.00) 		0.256
(1.00) 		0.959
(1.00) 		0.973
(1.00) 		0.723
(1.00) 		0.958
(1.00) 		1
(1.00)
LRPPRC 15 (5%) 263 0.841
(1.00) 		0.753
(1.00) 		0.423
(1.00) 		0.675
(1.00) 		0.5
(1.00) 		0.333
(1.00) 		0.643
(1.00) 		0.98
(1.00) 		0.133
(1.00) 		0.845
(1.00)
BTK 16 (6%) 262 0.105
(1.00) 		0.124
(1.00) 		0.477
(1.00) 		0.373
(1.00) 		0.00148
(1.00) 		0.194
(1.00) 		0.727
(1.00) 		0.179
(1.00) 		0.328
(1.00) 		1
(1.00)
DSG3 47 (17%) 231 0.741
(1.00) 		0.938
(1.00) 		0.0688
(1.00) 		0.793
(1.00) 		0.96
(1.00) 		0.733
(1.00) 		0.426
(1.00) 		0.528
(1.00) 		0.0974
(1.00) 		0.39
(1.00)
C1QTNF9 16 (6%) 262 0.583
(1.00) 		0.687
(1.00) 		0.647
(1.00) 		0.795
(1.00) 		1
(1.00) 		0.508
(1.00) 		0.373
(1.00) 		0.244
(1.00) 		0.944
(1.00) 		0.429
(1.00)
BLM 15 (5%) 263 0.534
(1.00) 		0.421
(1.00) 		0.366
(1.00) 		0.398
(1.00) 		0.403
(1.00) 		0.941
(1.00) 		0.145
(1.00) 		0.426
(1.00) 		0.0037
(1.00) 		0.109
(1.00)
ACSM2B 44 (16%) 234 0.307
(1.00) 		0.199
(1.00) 		0.329
(1.00) 		0.303
(1.00) 		0.105
(1.00) 		0.129
(1.00) 		0.233
(1.00) 		0.571
(1.00) 		0.344
(1.00) 		0.414
(1.00)
PARM1 19 (7%) 259 0.688
(1.00) 		0.91
(1.00) 		0.362
(1.00) 		0.358
(1.00) 		0.957
(1.00) 		0.378
(1.00) 		0.559
(1.00) 		0.286
(1.00) 		0.749
(1.00) 		0.281
(1.00)
TP63 48 (17%) 230 1
(1.00) 		0.141
(1.00) 		0.0434
(1.00) 		0.275
(1.00) 		0.23
(1.00) 		1
(1.00) 		0.774
(1.00) 		0.81
(1.00) 		0.337
(1.00) 		0.275
(1.00)
NGF 9 (3%) 269 0.106
(1.00) 		0.834
(1.00) 		0.0772
(1.00) 		1
(1.00) 		0.762
(1.00) 		0.83
(1.00) 		0.935
(1.00) 		0.916
(1.00) 		0.0981
(1.00) 		0.568
(1.00)
ANO4 45 (16%) 233 0.736
(1.00) 		0.439
(1.00) 		0.278
(1.00) 		0.775
(1.00) 		0.418
(1.00) 		1
(1.00) 		0.912
(1.00) 		0.745
(1.00) 		0.512
(1.00) 		0.805
(1.00)
PCDH18 50 (18%) 228 0.0231
(1.00) 		0.886
(1.00) 		0.0164
(1.00) 		0.718
(1.00) 		0.21
(1.00) 		0.631
(1.00) 		0.76
(1.00) 		0.732
(1.00) 		0.142
(1.00) 		1
(1.00)
NMS 13 (5%) 265 1
(1.00) 		0.178
(1.00) 		0.311
(1.00) 		0.912
(1.00) 		0.0139
(1.00) 		0.2
(1.00) 		0.915
(1.00) 		1
(1.00) 		0.394
(1.00) 		0.833
(1.00)
C12ORF43 5 (2%) 273 0.745
(1.00) 		0.452
(1.00) 		0.194
(1.00) 		0.267
(1.00) 		0.861
(1.00) 		0.458
(1.00) 		0.884
(1.00) 		0.403
(1.00) 		0.527
(1.00) 		0.641
(1.00)
XIRP2 94 (34%) 184 0.111
(1.00) 		0.335
(1.00) 		0.201
(1.00) 		0.722
(1.00) 		0.398
(1.00) 		0.726
(1.00) 		0.709
(1.00) 		0.57
(1.00) 		0.773
(1.00) 		0.521
(1.00)
USH2A 91 (33%) 187 0.29
(1.00) 		0.33
(1.00) 		0.0678
(1.00) 		0.822
(1.00) 		0.384
(1.00) 		0.644
(1.00) 		0.392
(1.00) 		0.323
(1.00) 		0.212
(1.00) 		0.354
(1.00)
DDX3X 19 (7%) 259 0.257
(1.00) 		1
(1.00) 		0.58
(1.00) 		0.188
(1.00) 		0.474
(1.00) 		0.218
(1.00) 		0.854
(1.00) 		0.326
(1.00) 		0.828
(1.00) 		0.767
(1.00)
PTPN22 24 (9%) 254 0.284
(1.00) 		0.0809
(1.00) 		0.437
(1.00) 		0.0253
(1.00) 		0.513
(1.00) 		0.856
(1.00) 		0.335
(1.00) 		0.696
(1.00) 		0.172
(1.00) 		0.487
(1.00)
C3ORF71 4 (1%) 274 0.568
(1.00) 		0.309
(1.00) 		0.483
(1.00) 		0.525
(1.00) 		0.211
(1.00) 		0.116
(1.00) 		0.848
(1.00) 		0.0285
(1.00) 		0.831
(1.00) 		0.564
(1.00)
CEACAM6 15 (5%) 263 0.751
(1.00) 		0.628
(1.00) 		0.924
(1.00) 		0.74
(1.00) 		0.844
(1.00) 		0.552
(1.00) 		0.293
(1.00) 		0.755
(1.00) 		0.943
(1.00) 		0.659
(1.00)
MUC7 17 (6%) 261 0.667
(1.00) 		0.459
(1.00) 		0.576
(1.00) 		0.741
(1.00) 		0.635
(1.00) 		0.446
(1.00) 		0.101
(1.00) 		0.39
(1.00) 		0.00557
(1.00) 		0.402
(1.00)
SELP 34 (12%) 244 0.896
(1.00) 		0.0748
(1.00) 		0.0377
(1.00) 		0.0718
(1.00) 		0.452
(1.00) 		0.333
(1.00) 		0.973
(1.00) 		0.559
(1.00) 		0.628
(1.00) 		0.959
(1.00)
LIPH 15 (5%) 263 0.257
(1.00) 		0.393
(1.00) 		0.258
(1.00) 		0.412
(1.00) 		0.716
(1.00) 		0.584
(1.00) 		0.881
(1.00) 		0.833
(1.00) 		0.885
(1.00) 		1
(1.00)
MMP1 14 (5%) 264 0.234
(1.00) 		0.138
(1.00) 		0.758
(1.00) 		0.866
(1.00) 		0.742
(1.00) 		0.682
(1.00) 		0.429
(1.00) 		0.0476
(1.00) 		1
(1.00) 		0.445
(1.00)
KLF11 9 (3%) 269 0.184
(1.00) 		0.0636
(1.00) 		0.846
(1.00) 		0.0265
(1.00) 		0.529
(1.00) 		0.913
(1.00) 		0.945
(1.00) 		0.962
(1.00) 		0.631
(1.00) 		0.464
(1.00)
USP9X 16 (6%) 262 0.497
(1.00) 		0.444
(1.00) 		0.212
(1.00) 		0.149
(1.00) 		1
(1.00) 		0.604
(1.00) 		0.222
(1.00) 		0.38
(1.00) 		0.134
(1.00) 		0.554
(1.00)
PTK7 17 (6%) 261 0.44
(1.00) 		0.48
(1.00) 		0.354
(1.00) 		0.623
(1.00) 		0.698
(1.00) 		0.656
(1.00) 		0.16
(1.00) 		0.372
(1.00) 		0.17
(1.00) 		0.553
(1.00)
SLC14A1 18 (6%) 260 0.713
(1.00) 		0.456
(1.00) 		0.832
(1.00) 		0.299
(1.00) 		1
(1.00) 		0.495
(1.00) 		0.99
(1.00) 		0.595
(1.00) 		0.169
(1.00) 		0.875
(1.00)
PROX2 13 (5%) 265 0.317
(1.00) 		0.482
(1.00) 		0.898
(1.00) 		0.873
(1.00) 		0.525
(1.00) 		0.0846
(1.00) 		0.855
(1.00) 		0.384
(1.00) 		0.367
(1.00) 		0.176
(1.00)
DNMBP 19 (7%) 259 0.111
(1.00) 		0.625
(1.00) 		0.978
(1.00) 		0.978
(1.00) 		0.633
(1.00) 		0.439
(1.00) 		0.189
(1.00) 		0.731
(1.00) 		0.0934
(1.00) 		0.52
(1.00)
MPP7 30 (11%) 248 0.279
(1.00) 		0.127
(1.00) 		0.397
(1.00) 		0.271
(1.00) 		0.29
(1.00) 		0.247
(1.00) 		1
(1.00) 		0.929
(1.00) 		0.967
(1.00) 		0.874
(1.00)
IFNGR2 4 (1%) 274 1
(1.00) 		0.461
(1.00) 		0.601
(1.00) 		0.0679
(1.00) 		0.459
(1.00) 		0.813
(1.00) 		0.847
(1.00) 		0.131
(1.00) 		0.831
(1.00) 		1
(1.00)
ASNSD1 7 (3%) 271 0.0183
(1.00) 		0.381
(1.00) 		0.545
(1.00) 		0.0308
(1.00) 		0.398
(1.00) 		0.889
(1.00) 		0.775
(1.00) 		1
(1.00) 		0.236
(1.00) 		0.861
(1.00)
RB1 9 (3%) 269 0.101
(1.00) 		0.146
(1.00) 		1
(1.00) 		0.938
(1.00) 		0.529
(1.00) 		0.473
(1.00) 		0.26
(1.00) 		0.00191
(1.00) 		0.834
(1.00) 		0.0721
(1.00)
CCK 6 (2%) 272 0.396
(1.00) 		0.58
(1.00) 		0.299
(1.00) 		0.0204
(1.00) 		0.52
(1.00) 		0.883
(1.00) 		0.726
(1.00) 		0.941
(1.00) 		1
(1.00) 		0.689
(1.00)
ZNF780B 10 (4%) 268 0.0844
(1.00) 		0.512
(1.00) 		0.338
(1.00) 		0.554
(1.00) 		0.613
(1.00) 		0.594
(1.00) 		0.552
(1.00) 		0.89
(1.00) 		0.834
(1.00) 		1
(1.00)
ATP5F1 7 (3%) 271 1
(1.00) 		0.891
(1.00) 		0.0316
(1.00) 		0.478
(1.00) 		0.795
(1.00) 		0.887
(1.00) 		0.826
(1.00) 		0.516
(1.00) 		0.715
(1.00) 		1
(1.00)
LOC728819 8 (3%) 270 1
(1.00) 		0.902
(1.00) 		0.105
(1.00) 		0.807
(1.00) 		0.904
(1.00) 		0.896
(1.00) 		0.692
(1.00) 		0.644
(1.00) 		0.486
(1.00) 		0.887
(1.00)
LACRT 9 (3%) 269 1
(1.00) 		0.395
(1.00) 		0.067
(1.00) 		0.0852
(1.00) 		0.915
(1.00) 		0.749
(1.00) 		0.322
(1.00) 		0.957
(1.00) 		1
(1.00) 		0.663
(1.00)
RPGRIP1 25 (9%) 253 0.205
(1.00) 		0.538
(1.00) 		0.317
(1.00) 		0.448
(1.00) 		0.323
(1.00) 		0.0606
(1.00) 		0.661
(1.00) 		0.319
(1.00) 		0.0631
(1.00) 		0.0527
(1.00)
THEMIS 34 (12%) 244 0.0361
(1.00) 		0.0418
(1.00) 		0.536
(1.00) 		0.635
(1.00) 		0.479
(1.00) 		0.421
(1.00) 		0.219
(1.00) 		0.297
(1.00) 		0.461
(1.00) 		0.473
(1.00)
PTPRT 81 (29%) 197 0.673
(1.00) 		0.0703
(1.00) 		0.27
(1.00) 		0.93
(1.00) 		0.651
(1.00) 		0.626
(1.00) 		0.696
(1.00) 		0.564
(1.00) 		0.125
(1.00) 		0.125
(1.00)
SELPLG 10 (4%) 268 0.716
(1.00) 		0.514
(1.00) 		0.079
(1.00) 		1
(1.00) 		0.37
(1.00) 		0.769
(1.00) 		0.922
(1.00) 		0.926
(1.00) 		0.82
(1.00) 		0.774
(1.00)
CSN3 4 (1%) 274 0.0657
(1.00) 		0.239
(1.00) 		0.391
(1.00) 		0.586
(1.00) 		1
(1.00) 		0.288
(1.00) 		0.921
(1.00) 		0.601
(1.00) 		1
(1.00) 		0.154
(1.00)
SLC7A11 12 (4%) 266 0.368
(1.00) 		0.494
(1.00) 		0.733
(1.00) 		0.474
(1.00) 		1
(1.00) 		0.868
(1.00) 		0.824
(1.00) 		0.785
(1.00) 		0.858
(1.00) 		0.386
(1.00)
SYNE1 73 (26%) 205 0.236
(1.00) 		0.108
(1.00) 		0.493
(1.00) 		0.773
(1.00) 		0.36
(1.00) 		0.659
(1.00) 		0.617
(1.00) 		0.607
(1.00) 		0.641
(1.00) 		0.686
(1.00)
NFASC 23 (8%) 255 0.321
(1.00) 		0.358
(1.00) 		0.744
(1.00) 		1
(1.00) 		0.441
(1.00) 		0.751
(1.00) 		0.608
(1.00) 		0.464
(1.00) 		0.579
(1.00) 		0.631
(1.00)
CCDC11 17 (6%) 261 0.952
(1.00) 		0.064
(1.00) 		0.256
(1.00) 		0.185
(1.00) 		0.181
(1.00) 		0.326
(1.00) 		0.398
(1.00) 		0.725
(1.00) 		0.029
(1.00) 		0.106
(1.00)
IL31RA 17 (6%) 261 0.633
(1.00) 		0.455
(1.00) 		0.561
(1.00) 		0.963
(1.00) 		0.202
(1.00) 		0.346
(1.00) 		0.749
(1.00) 		0.0635
(1.00) 		0.206
(1.00) 		0.465
(1.00)
MLL 38 (14%) 240 1
(1.00) 		0.685
(1.00) 		0.0726
(1.00) 		0.446
(1.00) 		0.365
(1.00) 		0.547
(1.00) 		0.26
(1.00) 		0.428
(1.00) 		0.216
(1.00) 		0.806
(1.00)
DIRC2 4 (1%) 274 0.458
(1.00) 		0.827
(1.00) 		0.687
(1.00) 		0.703
(1.00) 		0.427
(1.00) 		0.895
(1.00) 		0.688
(1.00) 		1
(1.00)
ADAM22 19 (7%) 259 0.657
(1.00) 		0.243
(1.00) 		0.013
(1.00) 		0.268
(1.00) 		0.142
(1.00) 		0.594
(1.00) 		0.991
(1.00) 		0.88
(1.00) 		0.909
(1.00) 		0.88
(1.00)
PLCXD2 9 (3%) 269 0.696
(1.00) 		0.16
(1.00) 		0.81
(1.00) 		0.203
(1.00) 		0.395
(1.00) 		0.474
(1.00) 		0.838
(1.00) 		0.254
(1.00) 		0.832
(1.00) 		0.792
(1.00)
EDN1 9 (3%) 269 1
(1.00) 		1
(1.00) 		0.577
(1.00) 		0.928
(1.00) 		0.634
(1.00) 		0.915
(1.00) 		0.65
(1.00) 		0.285
(1.00) 		0.176
(1.00) 		0.61
(1.00)
HTR7 9 (3%) 269 0.755
(1.00) 		0.395
(1.00) 		0.544
(1.00) 		0.624
(1.00) 		0.131
(1.00) 		0.271
(1.00) 		0.462
(1.00) 		0.195
(1.00) 		0.903
(1.00) 		0.482
(1.00)
TLR9 18 (6%) 260 0.148
(1.00) 		0.173
(1.00) 		1
(1.00) 		0.413
(1.00) 		0.618
(1.00) 		0.905
(1.00) 		0.207
(1.00) 		0.706
(1.00) 		0.461
(1.00) 		0.873
(1.00)
MYH1 67 (24%) 211 0.0745
(1.00) 		0.0115
(1.00) 		0.424
(1.00) 		0.371
(1.00) 		0.165
(1.00) 		0.449
(1.00) 		0.897
(1.00) 		0.813
(1.00) 		0.192
(1.00) 		0.427
(1.00)
EPHA3 30 (11%) 248 0.941
(1.00) 		0.806
(1.00) 		0.966
(1.00) 		0.826
(1.00) 		0.941
(1.00) 		0.599
(1.00) 		0.121
(1.00) 		0.0129
(1.00) 		0.265
(1.00) 		0.296
(1.00)
ARL16 7 (3%) 271 0.156
(1.00) 		0.8
(1.00) 		0.48
(1.00) 		0.288
(1.00) 		0.512
(1.00) 		0.236
(1.00) 		0.256
(1.00) 		0.0481
(1.00) 		0.233
(1.00) 		0.631
(1.00)
DDX17 11 (4%) 267 0.263
(1.00) 		0.0873
(1.00) 		0.792
(1.00) 		0.886
(1.00) 		1
(1.00) 		0.735
(1.00) 		0.261
(1.00) 		0.853
(1.00) 		0.51
(1.00) 		0.451
(1.00)
MAN1A1 14 (5%) 264 0.345
(1.00) 		0.194
(1.00) 		0.583
(1.00) 		0.178
(1.00) 		0.144
(1.00) 		0.826
(1.00) 		0.31
(1.00) 		0.136
(1.00) 		0.119
(1.00) 		0.833
(1.00)
ADAM30 28 (10%) 250 0.347
(1.00) 		0.906
(1.00) 		0.431
(1.00) 		0.0399
(1.00) 		0.29
(1.00) 		0.177
(1.00) 		0.0438
(1.00) 		0.695
(1.00) 		0.087
(1.00) 		0.395
(1.00)
NBEAL1 30 (11%) 248 0.0935
(1.00) 		0.0293
(1.00) 		0.567
(1.00) 		0.073
(1.00) 		0.833
(1.00) 		0.185
(1.00) 		0.778
(1.00) 		0.434
(1.00) 		0.969
(1.00) 		0.88
(1.00)
WDR65 21 (8%) 257 0.484
(1.00) 		0.881
(1.00) 		0.284
(1.00) 		0.915
(1.00) 		0.717
(1.00) 		0.739
(1.00) 		0.241
(1.00) 		0.069
(1.00) 		0.431
(1.00) 		0.661
(1.00)
C6ORF165 19 (7%) 259 0.954
(1.00) 		0.91
(1.00) 		0.277
(1.00) 		0.232
(1.00) 		0.419
(1.00) 		0.789
(1.00) 		0.81
(1.00) 		0.0447
(1.00) 		0.386
(1.00) 		0.425
(1.00)
RNF133 8 (3%) 270 0.75
(1.00) 		0.483
(1.00) 		0.341
(1.00) 		0.478
(1.00) 		0.742
(1.00) 		1
(1.00) 		0.238
(1.00) 		0.521
(1.00) 		0.604
(1.00) 		0.66
(1.00)
GTPBP4 8 (3%) 270 0.823
(1.00) 		0.602
(1.00) 		0.683
(1.00) 		0.194
(1.00) 		0.294
(1.00) 		0.528
(1.00) 		0.768
(1.00) 		0.956
(1.00) 		0.222
(1.00) 		0.662
(1.00)
ACSBG1 12 (4%) 266 0.421
(1.00) 		0.702
(1.00) 		0.72
(1.00) 		0.258
(1.00) 		0.325
(1.00) 		0.65
(1.00) 		0.76
(1.00) 		0.492
(1.00) 		0.858
(1.00) 		0.385
(1.00)
TPTE 60 (22%) 218 0.883
(1.00) 		0.0463
(1.00) 		0.0695
(1.00) 		0.917
(1.00) 		0.087
(1.00) 		0.431
(1.00) 		0.817
(1.00) 		0.461
(1.00) 		0.71
(1.00) 		0.123
(1.00)
CLCC1 13 (5%) 265 0.595
(1.00) 		0.636
(1.00) 		0.869
(1.00) 		0.59
(1.00) 		0.772
(1.00) 		0.67
(1.00) 		0.764
(1.00) 		0.402
(1.00) 		0.0976
(1.00) 		0.836
(1.00)
PPAP2B 10 (4%) 268 0.328
(1.00) 		0.608
(1.00) 		0.302
(1.00) 		0.762
(1.00) 		0.37
(1.00) 		0.771
(1.00) 		0.905
(1.00) 		0.624
(1.00) 		0.712
(1.00) 		0.631
(1.00)
CD300E 10 (4%) 268 0.398
(1.00) 		0.714
(1.00) 		0.528
(1.00) 		0.793
(1.00) 		0.148
(1.00) 		0.649
(1.00) 		0.778
(1.00) 		0.342
(1.00) 		0.438
(1.00) 		0.304
(1.00)
ALDH5A1 10 (4%) 268 0.775
(1.00) 		0.0735
(1.00) 		0.413
(1.00) 		0.95
(1.00) 		0.0192
(1.00) 		0.0491
(1.00) 		0.891
(1.00) 		0.361
(1.00) 		0.0724
(1.00) 		0.226
(1.00)
SPRYD3 8 (3%) 270 0.539
(1.00) 		1
(1.00) 		0.683
(1.00) 		0.672
(1.00) 		0.744
(1.00) 		0.596
(1.00) 		0.411
(1.00) 		1
(1.00) 		0.565
(1.00) 		0.302
(1.00)
MAP3K5 20 (7%) 258 0.144
(1.00) 		0.343
(1.00) 		0.225
(1.00) 		0.637
(1.00) 		0.0101
(1.00) 		0.552
(1.00) 		0.399
(1.00) 		0.495
(1.00) 		0.831
(1.00) 		0.605
(1.00)
CASP8 9 (3%) 269 0.482
(1.00) 		0.394
(1.00) 		0.447
(1.00) 		0.732
(1.00) 		0.101
(1.00) 		0.746
(1.00) 		0.674
(1.00) 		0.667
(1.00) 		0.0605
(1.00) 		0.894
(1.00)
SNCAIP 49 (18%) 229 0.849
(1.00) 		0.796
(1.00) 		0.507
(1.00) 		0.795
(1.00) 		0.694
(1.00) 		0.443
(1.00) 		0.734
(1.00) 		0.164
(1.00) 		0.472
(1.00) 		0.248
(1.00)
HLA-DRA 12 (4%) 266 0.122
(1.00) 		0.816
(1.00) 		0.0656
(1.00) 		0.0922
(1.00) 		0.579
(1.00) 		0.448
(1.00) 		0.335
(1.00) 		0.124
(1.00) 		1
(1.00) 		0.0615
(1.00)
ACTC1 15 (5%) 263 0.00212
(1.00) 		0.108
(1.00) 		0.467
(1.00) 		0.572
(1.00) 		0.449
(1.00) 		0.104
(1.00) 		0.357
(1.00) 		0.686
(1.00) 		0.881
(1.00) 		0.306
(1.00)
ELOVL3 5 (2%) 273 0.262
(1.00) 		0.856
(1.00) 		0.524
(1.00) 		0.441
(1.00) 		0.274
(1.00) 		0.6
(1.00) 		0.587
(1.00) 		0.588
(1.00) 		1
(1.00) 		0.391
(1.00)
THSD7B 89 (32%) 189 0.101
(1.00) 		0.244
(1.00) 		0.497
(1.00) 		0.594
(1.00) 		0.402
(1.00) 		0.236
(1.00) 		0.251
(1.00) 		0.435
(1.00) 		0.41
(1.00) 		0.544
(1.00)
SLC27A5 9 (3%) 269 0.756
(1.00) 		0.361
(1.00) 		0.441
(1.00) 		0.691
(1.00) 		0.915
(1.00) 		1
(1.00) 		0.0601
(1.00) 		0.784
(1.00) 		0.35
(1.00) 		0.568
(1.00)
PDE4DIP 44 (16%) 234 0.294
(1.00) 		0.0925
(1.00) 		0.139
(1.00) 		0.358
(1.00) 		0.287
(1.00) 		0.754
(1.00) 		0.432
(1.00) 		0.914
(1.00) 		0.241
(1.00) 		0.777
(1.00)
KANK3 8 (3%) 270 0.748
(1.00) 		0.121
(1.00) 		0.482
(1.00) 		0.759
(1.00) 		0.0242
(1.00) 		0.147
(1.00) 		0.879
(1.00) 		0.779
(1.00) 		0.0871
(1.00) 		1
(1.00)
RUNX1T1 34 (12%) 244 0.118
(1.00) 		0.0243
(1.00) 		0.703
(1.00) 		0.385
(1.00) 		0.629
(1.00) 		0.297
(1.00) 		0.59
(1.00) 		0.653
(1.00) 		0.326
(1.00) 		0.49
(1.00)
WDR12 11 (4%) 267 0.431
(1.00) 		0.86
(1.00) 		0.562
(1.00) 		0.372
(1.00) 		0.687
(1.00) 		0.155
(1.00) 		0.942
(1.00) 		0.524
(1.00) 		0.797
(1.00) 		1
(1.00)
POTEG 31 (11%) 247 0.05
(1.00) 		0.0245
(1.00) 		0.335
(1.00) 		0.554
(1.00) 		0.422
(1.00) 		0.118
(1.00) 		0.281
(1.00) 		0.566
(1.00) 		0.579
(1.00) 		0.653
(1.00)
ITPR2 16 (6%) 262 0.238
(1.00) 		0.419
(1.00) 		1
(1.00) 		0.792
(1.00) 		0.423
(1.00) 		0.847
(1.00) 		0.276
(1.00) 		0.821
(1.00) 		0.251
(1.00) 		1
(1.00)
CRNKL1 13 (5%) 265 1
(1.00) 		0.0635
(1.00) 		0.543
(1.00) 		0.417
(1.00) 		0.88
(1.00) 		0.625
(1.00) 		0.0307
(1.00) 		0.322
(1.00) 		0.555
(1.00) 		0.226
(1.00)
DSP 60 (22%) 218 0.0489
(1.00) 		0.277
(1.00) 		0.157
(1.00) 		0.922
(1.00) 		0.178
(1.00) 		0.609
(1.00) 		0.426
(1.00) 		0.718
(1.00) 		0.398
(1.00) 		0.092
(1.00)
SF3B1 14 (5%) 264 0.447
(1.00) 		0.417
(1.00) 		0.0342
(1.00) 		0.453
(1.00) 		0.0385
(1.00) 		0.0448
(1.00) 		0.0283
(1.00) 		0.14
(1.00) 		0.00606
(1.00) 		0.00033
(0.483)
CAGE1 11 (4%) 267 0.63
(1.00) 		0.857
(1.00) 		0.818
(1.00) 		0.0587
(1.00) 		0.926
(1.00) 		0.678
(1.00) 		0.279
(1.00) 		0.713
(1.00) 		0.498
(1.00) 		0.811
(1.00)
DDX43 11 (4%) 267 0.115
(1.00) 		0.169
(1.00) 		0.731
(1.00) 		1
(1.00) 		0.226
(1.00) 		0.46
(1.00) 		0.98
(1.00) 		1
(1.00) 		0.543
(1.00) 		1
(1.00)
CYP3A7 25 (9%) 253 0.864
(1.00) 		0.384
(1.00) 		0.529
(1.00) 		0.897
(1.00) 		0.0932
(1.00) 		0.439
(1.00) 		0.463
(1.00) 		0.386
(1.00) 		0.0101
(1.00) 		0.249
(1.00)
VGLL1 6 (2%) 272 0.51
(1.00) 		0.672
(1.00) 		1
(1.00) 		0.76
(1.00) 		0.679
(1.00) 		0.883
(1.00) 		0.284
(1.00) 		0.737
(1.00) 		0.631
(1.00) 		0.228
(1.00)
GML 10 (4%) 268 0.0643
(1.00) 		0.559
(1.00) 		0.941
(1.00) 		0.219
(1.00) 		0.848
(1.00) 		0.845
(1.00) 		0.399
(1.00) 		0.679
(1.00) 		0.334
(1.00) 		0.561
(1.00)
GZMA 11 (4%) 267 0.926
(1.00) 		0.242
(1.00) 		0.726
(1.00) 		0.764
(1.00) 		0.927
(1.00) 		0.793
(1.00) 		0.386
(1.00) 		1
(1.00) 		0.0725
(1.00) 		0.736
(1.00)
NPTX1 8 (3%) 270 0.611
(1.00) 		0.277
(1.00) 		0.366
(1.00) 		0.694
(1.00) 		0.0794
(1.00) 		0.151
(1.00) 		0.346
(1.00) 		0.318
(1.00) 		0.0766
(1.00) 		0.413
(1.00)
DACT1 13 (5%) 265 0.0798
(1.00) 		0.771
(1.00) 		0.223
(1.00) 		0.656
(1.00) 		0.187
(1.00) 		0.761
(1.00) 		0.96
(1.00) 		1
(1.00) 		0.132
(1.00) 		0.546
(1.00)
STK19 13 (5%) 265 0.49
(1.00) 		0.0452
(1.00) 		0.142
(1.00) 		0.888
(1.00) 		0.678
(1.00) 		0.372
(1.00) 		0.352
(1.00) 		0.6
(1.00) 		0.755
(1.00) 		0.466
(1.00)
STK31 36 (13%) 242 0.425
(1.00) 		0.0364
(1.00) 		0.355
(1.00) 		0.657
(1.00) 		0.0006
(0.877) 		0.002
(1.00) 		0.891
(1.00) 		0.925
(1.00) 		0.115
(1.00) 		0.595
(1.00)
ROS1 57 (21%) 221 0.135
(1.00) 		0.0116
(1.00) 		0.795
(1.00) 		0.762
(1.00) 		1
(1.00) 		0.858
(1.00) 		0.0679
(1.00) 		0.0424
(1.00) 		0.223
(1.00) 		0.0688
(1.00)
KCNB2 59 (21%) 219 0.243
(1.00) 		0.0235
(1.00) 		0.18
(1.00) 		0.51
(1.00) 		0.326
(1.00) 		0.663
(1.00) 		0.526
(1.00) 		0.433
(1.00) 		0.784
(1.00) 		0.328
(1.00)
ART3 12 (4%) 266 0.66
(1.00) 		0.317
(1.00) 		0.854
(1.00) 		0.255
(1.00) 		0.664
(1.00) 		1
(1.00) 		0.513
(1.00) 		0.868
(1.00) 		0.423
(1.00) 		0.905
(1.00)
CLDN4 11 (4%) 267 0.684
(1.00) 		0.736
(1.00) 		0.618
(1.00) 		0.664
(1.00) 		0.927
(1.00) 		0.625
(1.00) 		0.839
(1.00) 		0.513
(1.00) 		0.662
(1.00) 		1
(1.00)
RAG2 18 (6%) 260 0.393
(1.00) 		0.617
(1.00) 		0.211
(1.00) 		0.377
(1.00) 		0.202
(1.00) 		0.399
(1.00) 		0.714
(1.00) 		0.925
(1.00) 		0.198
(1.00) 		0.443
(1.00)
'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.91

Table S1.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
NRAS MUTATED 34 33 19
NRAS WILD-TYPE 39 72 81

Figure S1.  Get High-res Image Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00875 (Fisher's exact test), Q value = 1

Table S2.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
NRAS MUTATED 39 25 22
NRAS WILD-TYPE 53 87 52

Figure S2.  Get High-res Image Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S3.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NRAS MUTATED 17 19 7 8
NRAS WILD-TYPE 29 39 19 30
'NRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S4.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NRAS MUTATED 11 20 10 10
NRAS WILD-TYPE 16 38 24 39
'NRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S5.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
NRAS MUTATED 32 23 31
NRAS WILD-TYPE 66 59 67
'NRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
NRAS MUTATED 28 40 18
NRAS WILD-TYPE 47 89 56
'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S7.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
NRAS MUTATED 10 23 21 28 0
NRAS WILD-TYPE 29 55 40 57 6
'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S8.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
NRAS MUTATED 18 38 17 9
NRAS WILD-TYPE 58 70 34 25
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.15

Table S9.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
NRAS MUTATED 12 21 46
NRAS WILD-TYPE 61 64 54

Figure S3.  Get High-res Image Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S10.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
NRAS MUTATED 45 25 9
NRAS WILD-TYPE 83 79 17
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S11.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
TP53 MUTATED 11 19 17
TP53 WILD-TYPE 62 86 83
'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00907 (Fisher's exact test), Q value = 1

Table S12.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
TP53 MUTATED 22 20 5
TP53 WILD-TYPE 70 92 69

Figure S4.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S13.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TP53 MUTATED 5 8 3 10
TP53 WILD-TYPE 41 50 23 28
'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
TP53 MUTATED 4 13 4 5
TP53 WILD-TYPE 23 45 30 44
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S15.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
TP53 MUTATED 14 20 13
TP53 WILD-TYPE 84 62 85
'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S16.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
TP53 MUTATED 10 27 10
TP53 WILD-TYPE 65 102 64
'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S17.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
TP53 MUTATED 5 11 13 13 0
TP53 WILD-TYPE 34 67 48 72 6
'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S18.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
TP53 MUTATED 12 19 7 4
TP53 WILD-TYPE 64 89 44 30
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S19.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
TP53 MUTATED 13 10 18
TP53 WILD-TYPE 60 75 82
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S20.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
TP53 MUTATED 23 14 4
TP53 WILD-TYPE 105 90 22
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0933 (Fisher's exact test), Q value = 1

Table S21.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
CDKN2A MUTATED 9 11 21
CDKN2A WILD-TYPE 64 94 79
'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S22.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
CDKN2A MUTATED 18 17 6
CDKN2A WILD-TYPE 74 95 68
'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S23.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CDKN2A MUTATED 7 6 8 6
CDKN2A WILD-TYPE 39 52 18 32
'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S24.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CDKN2A MUTATED 5 8 4 10
CDKN2A WILD-TYPE 22 50 30 39
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S25.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
CDKN2A MUTATED 14 12 15
CDKN2A WILD-TYPE 84 70 83
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S26.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
CDKN2A MUTATED 10 18 13
CDKN2A WILD-TYPE 65 111 61
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S27.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
CDKN2A MUTATED 5 11 12 11 1
CDKN2A WILD-TYPE 34 67 49 74 5
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S28.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
CDKN2A MUTATED 8 19 9 4
CDKN2A WILD-TYPE 68 89 42 30
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S29.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
CDKN2A MUTATED 12 11 16
CDKN2A WILD-TYPE 61 74 84
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S30.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
CDKN2A MUTATED 22 13 4
CDKN2A WILD-TYPE 106 91 22
'RPS27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S31.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
RPS27 MUTATED 7 9 8
RPS27 WILD-TYPE 66 96 92
'RPS27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S32.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
RPS27 MUTATED 7 9 8
RPS27 WILD-TYPE 85 103 66
'RPS27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S33.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RPS27 MUTATED 5 6 1 5
RPS27 WILD-TYPE 41 52 25 33
'RPS27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S34.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
RPS27 MUTATED 3 6 4 4
RPS27 WILD-TYPE 24 52 30 45
'RPS27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S35.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
RPS27 MUTATED 8 9 7
RPS27 WILD-TYPE 90 73 91
'RPS27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S36.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
RPS27 MUTATED 6 13 5
RPS27 WILD-TYPE 69 116 69
'RPS27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S37.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
RPS27 MUTATED 3 5 8 7 0
RPS27 WILD-TYPE 36 73 53 78 6
'RPS27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S38.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
RPS27 MUTATED 7 10 3 3
RPS27 WILD-TYPE 69 98 48 31
'RPS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S39.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
RPS27 MUTATED 7 6 10
RPS27 WILD-TYPE 66 79 90
'RPS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S40.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
RPS27 MUTATED 12 9 2
RPS27 WILD-TYPE 116 95 24
'MRPS31 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S41.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
MRPS31 MUTATED 8 7 4
MRPS31 WILD-TYPE 65 98 96
'MRPS31 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0491 (Fisher's exact test), Q value = 1

Table S42.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
MRPS31 MUTATED 10 3 6
MRPS31 WILD-TYPE 82 109 68

Figure S5.  Get High-res Image Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MRPS31 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S43.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MRPS31 MUTATED 2 4 1 2
MRPS31 WILD-TYPE 44 54 25 36
'MRPS31 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S44.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MRPS31 MUTATED 2 3 1 3
MRPS31 WILD-TYPE 25 55 33 46
'MRPS31 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S45.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
MRPS31 MUTATED 10 3 6
MRPS31 WILD-TYPE 88 79 92
'MRPS31 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S46.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
MRPS31 MUTATED 9 6 4
MRPS31 WILD-TYPE 66 123 70
'MRPS31 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S47.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
MRPS31 MUTATED 1 6 3 8 0
MRPS31 WILD-TYPE 38 72 58 77 6
'MRPS31 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S48.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
MRPS31 MUTATED 5 11 1 1
MRPS31 WILD-TYPE 71 97 50 33
'MRPS31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S49.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
MRPS31 MUTATED 6 3 8
MRPS31 WILD-TYPE 67 82 92
'MRPS31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S50.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
MRPS31 MUTATED 12 5 0
MRPS31 WILD-TYPE 116 99 26
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S51.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
NF1 MUTATED 14 14 10
NF1 WILD-TYPE 59 91 90
'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S52.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
NF1 MUTATED 16 12 10
NF1 WILD-TYPE 76 100 64
'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S53.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NF1 MUTATED 6 9 3 9
NF1 WILD-TYPE 40 49 23 29
'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S54.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NF1 MUTATED 4 7 5 11
NF1 WILD-TYPE 23 51 29 38
'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S55.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
NF1 MUTATED 15 12 11
NF1 WILD-TYPE 83 70 87
'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S56.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
NF1 MUTATED 15 15 8
NF1 WILD-TYPE 60 114 66
'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S57.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
NF1 MUTATED 6 7 13 12 0
NF1 WILD-TYPE 33 71 48 73 6
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S58.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
NF1 MUTATED 13 12 8 5
NF1 WILD-TYPE 63 96 43 29
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 1

Table S59.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
NF1 MUTATED 14 6 16
NF1 WILD-TYPE 59 79 84
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S60.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
NF1 MUTATED 22 10 4
NF1 WILD-TYPE 106 94 22
'RAC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S61.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
RAC1 MUTATED 7 10 3
RAC1 WILD-TYPE 66 95 97
'RAC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S62.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
RAC1 MUTATED 4 12 4
RAC1 WILD-TYPE 88 100 70
'RAC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S63.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RAC1 MUTATED 5 3 1 4
RAC1 WILD-TYPE 41 55 25 34
'RAC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S64.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
RAC1 MUTATED 1 7 3 2
RAC1 WILD-TYPE 26 51 31 47
'RAC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S65.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
RAC1 MUTATED 7 7 6
RAC1 WILD-TYPE 91 75 92
'RAC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S66.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
RAC1 MUTATED 6 9 5
RAC1 WILD-TYPE 69 120 69
'RAC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S67.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
RAC1 MUTATED 5 3 7 5 0
RAC1 WILD-TYPE 34 75 54 80 6
'RAC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S68.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
RAC1 MUTATED 3 7 6 4
RAC1 WILD-TYPE 73 101 45 30
'RAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S69.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
RAC1 MUTATED 5 5 8
RAC1 WILD-TYPE 68 80 92
'RAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S70.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
RAC1 MUTATED 9 6 3
RAC1 WILD-TYPE 119 98 23
'ARID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S71.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
ARID2 MUTATED 10 12 13
ARID2 WILD-TYPE 63 93 87
'ARID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 1

Table S72.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
ARID2 MUTATED 18 11 6
ARID2 WILD-TYPE 74 101 68
'ARID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S73.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ARID2 MUTATED 8 10 2 5
ARID2 WILD-TYPE 38 48 24 33
'ARID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S74.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ARID2 MUTATED 4 11 4 6
ARID2 WILD-TYPE 23 47 30 43
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S75.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
ARID2 MUTATED 11 11 13
ARID2 WILD-TYPE 87 71 85
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S76.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
ARID2 MUTATED 14 14 7
ARID2 WILD-TYPE 61 115 67
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S77.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
ARID2 MUTATED 8 10 5 10 0
ARID2 WILD-TYPE 31 68 56 75 6
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S78.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
ARID2 MUTATED 8 13 4 8
ARID2 WILD-TYPE 68 95 47 26
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S79.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
ARID2 MUTATED 9 11 13
ARID2 WILD-TYPE 64 74 87
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S80.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
ARID2 MUTATED 14 13 6
ARID2 WILD-TYPE 114 91 20
'C15ORF23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S81.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
C15ORF23 MUTATED 5 8 6
C15ORF23 WILD-TYPE 68 97 94
'C15ORF23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00761 (Fisher's exact test), Q value = 1

Table S82.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
C15ORF23 MUTATED 9 10 0
C15ORF23 WILD-TYPE 83 102 74

Figure S6.  Get High-res Image Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C15ORF23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S83.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C15ORF23 MUTATED 4 3 2 1
C15ORF23 WILD-TYPE 42 55 24 37
'C15ORF23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S84.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
C15ORF23 MUTATED 2 3 1 4
C15ORF23 WILD-TYPE 25 55 33 45
'C15ORF23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S85.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
C15ORF23 MUTATED 5 8 6
C15ORF23 WILD-TYPE 93 74 92
'C15ORF23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S86.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
C15ORF23 MUTATED 3 12 4
C15ORF23 WILD-TYPE 72 117 70
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S87.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
C15ORF23 MUTATED 2 6 2 6 0
C15ORF23 WILD-TYPE 37 72 59 79 6
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S88.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
C15ORF23 MUTATED 6 5 4 1
C15ORF23 WILD-TYPE 70 103 47 33
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S89.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
C15ORF23 MUTATED 5 4 6
C15ORF23 WILD-TYPE 68 81 94
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S90.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
C15ORF23 MUTATED 9 5 1
C15ORF23 WILD-TYPE 119 99 25
'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S91.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
PTEN MUTATED 5 5 13
PTEN WILD-TYPE 68 100 87
'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S92.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
PTEN MUTATED 9 5 9
PTEN WILD-TYPE 83 107 65
'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 1

Table S93.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PTEN MUTATED 5 8 0 0
PTEN WILD-TYPE 41 50 26 38

Figure S7.  Get High-res Image Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0837 (Fisher's exact test), Q value = 1

Table S94.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PTEN MUTATED 1 8 0 4
PTEN WILD-TYPE 26 50 34 45
'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S95.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
PTEN MUTATED 5 6 12
PTEN WILD-TYPE 93 76 86
'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0737 (Fisher's exact test), Q value = 1

Table S96.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
PTEN MUTATED 7 6 10
PTEN WILD-TYPE 68 123 64
'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S97.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
PTEN MUTATED 6 9 3 4 1
PTEN WILD-TYPE 33 69 58 81 5
'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S98.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
PTEN MUTATED 3 10 4 6
PTEN WILD-TYPE 73 98 47 28
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 1

Table S99.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
PTEN MUTATED 2 12 8
PTEN WILD-TYPE 71 73 92

Figure S8.  Get High-res Image Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S100.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
PTEN MUTATED 9 9 4
PTEN WILD-TYPE 119 95 22
'NOTCH2NL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S101.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
NOTCH2NL MUTATED 5 5 5
NOTCH2NL WILD-TYPE 68 100 95
'NOTCH2NL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S102.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
NOTCH2NL MUTATED 6 5 4
NOTCH2NL WILD-TYPE 86 107 70
'NOTCH2NL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S103.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NOTCH2NL MUTATED 3 3 0 3
NOTCH2NL WILD-TYPE 43 55 26 35
'NOTCH2NL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S104.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NOTCH2NL MUTATED 4 3 1 1
NOTCH2NL WILD-TYPE 23 55 33 48
'NOTCH2NL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 1

Table S105.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
NOTCH2NL MUTATED 4 1 10
NOTCH2NL WILD-TYPE 94 81 88

Figure S9.  Get High-res Image Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NOTCH2NL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S106.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
NOTCH2NL MUTATED 3 5 7
NOTCH2NL WILD-TYPE 72 124 67
'NOTCH2NL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S107.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
NOTCH2NL MUTATED 3 4 4 3 1
NOTCH2NL WILD-TYPE 36 74 57 82 5
'NOTCH2NL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0868 (Fisher's exact test), Q value = 1

Table S108.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
NOTCH2NL MUTATED 2 4 6 3
NOTCH2NL WILD-TYPE 74 104 45 31
'NOTCH2NL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S109.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
NOTCH2NL MUTATED 3 4 8
NOTCH2NL WILD-TYPE 70 81 92
'NOTCH2NL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S110.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
NOTCH2NL MUTATED 4 8 3
NOTCH2NL WILD-TYPE 124 96 23
'MAP2K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0902 (Fisher's exact test), Q value = 1

Table S111.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
MAP2K1 MUTATED 2 9 2
MAP2K1 WILD-TYPE 71 96 98
'MAP2K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00118 (Fisher's exact test), Q value = 1

Table S112.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
MAP2K1 MUTATED 0 11 2
MAP2K1 WILD-TYPE 92 101 72

Figure S10.  Get High-res Image Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAP2K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S113.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MAP2K1 MUTATED 5 2 1 1
MAP2K1 WILD-TYPE 41 56 25 37
'MAP2K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0215 (Fisher's exact test), Q value = 1

Table S114.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MAP2K1 MUTATED 5 1 1 2
MAP2K1 WILD-TYPE 22 57 33 47

Figure S11.  Get High-res Image Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S115.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
MAP2K1 MUTATED 2 5 6
MAP2K1 WILD-TYPE 96 77 92
'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S116.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
MAP2K1 MUTATED 1 6 6
MAP2K1 WILD-TYPE 74 123 68
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 1

Table S117.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
MAP2K1 MUTATED 2 8 0 3 0
MAP2K1 WILD-TYPE 37 70 61 82 6
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S118.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
MAP2K1 MUTATED 3 5 3 2
MAP2K1 WILD-TYPE 73 103 48 32
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 1

Table S119.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
MAP2K1 MUTATED 2 9 2
MAP2K1 WILD-TYPE 71 76 98

Figure S12.  Get High-res Image Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0922 (Fisher's exact test), Q value = 1

Table S120.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
MAP2K1 MUTATED 3 8 2
MAP2K1 WILD-TYPE 125 96 24
'PPP6C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S121.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
PPP6C MUTATED 5 7 8
PPP6C WILD-TYPE 68 98 92
'PPP6C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S122.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
PPP6C MUTATED 9 7 4
PPP6C WILD-TYPE 83 105 70
'PPP6C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S123.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PPP6C MUTATED 5 2 2 2
PPP6C WILD-TYPE 41 56 24 36
'PPP6C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S124.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PPP6C MUTATED 4 2 2 3
PPP6C WILD-TYPE 23 56 32 46
'PPP6C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S125.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
PPP6C MUTATED 6 6 8
PPP6C WILD-TYPE 92 76 90
'PPP6C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S126.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
PPP6C MUTATED 5 8 7
PPP6C WILD-TYPE 70 121 67
'PPP6C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S127.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
PPP6C MUTATED 6 6 4 4 0
PPP6C WILD-TYPE 33 72 57 81 6
'PPP6C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0541 (Fisher's exact test), Q value = 1

Table S128.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
PPP6C MUTATED 2 9 3 6
PPP6C WILD-TYPE 74 99 48 28
'PPP6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S129.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
PPP6C MUTATED 4 6 9
PPP6C WILD-TYPE 69 79 91
'PPP6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S130.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
PPP6C MUTATED 9 6 4
PPP6C WILD-TYPE 119 98 22
'IDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S131.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
IDH1 MUTATED 4 8 4
IDH1 WILD-TYPE 69 97 96
'IDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S132.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
IDH1 MUTATED 9 5 2
IDH1 WILD-TYPE 83 107 72
'IDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S133.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
IDH1 MUTATED 1 4 1 3
IDH1 WILD-TYPE 45 54 25 35
'IDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S134.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
IDH1 MUTATED 0 6 2 1
IDH1 WILD-TYPE 27 52 32 48
'IDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S135.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
IDH1 MUTATED 7 6 3
IDH1 WILD-TYPE 91 76 95
'IDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S136.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
IDH1 MUTATED 5 9 2
IDH1 WILD-TYPE 70 120 72
'IDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S137.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
IDH1 MUTATED 3 2 1 9 0
IDH1 WILD-TYPE 36 76 60 76 6
'IDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S138.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
IDH1 MUTATED 5 6 1 3
IDH1 WILD-TYPE 71 102 50 31
'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S139.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
IDH1 MUTATED 4 2 9
IDH1 WILD-TYPE 69 83 91
'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S140.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
IDH1 MUTATED 10 2 3
IDH1 WILD-TYPE 118 102 23

Figure S13.  Get High-res Image Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PDE1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S141.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
PDE1A MUTATED 13 14 12
PDE1A WILD-TYPE 60 91 88
'PDE1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S142.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
PDE1A MUTATED 16 15 8
PDE1A WILD-TYPE 76 97 66
'PDE1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S143.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PDE1A MUTATED 7 8 6 7
PDE1A WILD-TYPE 39 50 20 31
'PDE1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S144.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PDE1A MUTATED 6 7 6 9
PDE1A WILD-TYPE 21 51 28 40
'PDE1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 1

Table S145.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
PDE1A MUTATED 16 17 6
PDE1A WILD-TYPE 82 65 92

Figure S14.  Get High-res Image Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PDE1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0338 (Fisher's exact test), Q value = 1

Table S146.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
PDE1A MUTATED 13 22 4
PDE1A WILD-TYPE 62 107 70

Figure S15.  Get High-res Image Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PDE1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S147.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
PDE1A MUTATED 6 10 7 15 0
PDE1A WILD-TYPE 33 68 54 70 6
'PDE1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0556 (Fisher's exact test), Q value = 1

Table S148.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
PDE1A MUTATED 11 21 2 4
PDE1A WILD-TYPE 65 87 49 30
'PDE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S149.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
PDE1A MUTATED 11 11 16
PDE1A WILD-TYPE 62 74 84
'PDE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S150.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
PDE1A MUTATED 22 12 4
PDE1A WILD-TYPE 106 92 22
'HMGCR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S151.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
HMGCR MUTATED 2 6 3
HMGCR WILD-TYPE 71 99 97
'HMGCR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S152.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
HMGCR MUTATED 5 5 1
HMGCR WILD-TYPE 87 107 73
'HMGCR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S153.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
HMGCR MUTATED 1 2 1 4
HMGCR WILD-TYPE 45 56 25 34
'HMGCR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S154.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
HMGCR MUTATED 0 4 2 2
HMGCR WILD-TYPE 27 54 32 47
'HMGCR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S155.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
HMGCR MUTATED 3 5 3
HMGCR WILD-TYPE 95 77 95
'HMGCR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S156.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
HMGCR MUTATED 3 6 2
HMGCR WILD-TYPE 72 123 72
'HMGCR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S157.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
HMGCR MUTATED 2 1 3 5 0
HMGCR WILD-TYPE 37 77 58 80 6
'HMGCR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S158.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
HMGCR MUTATED 1 6 4 0
HMGCR WILD-TYPE 75 102 47 34
'HMGCR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 1

Table S159.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
HMGCR MUTATED 4 0 7
HMGCR WILD-TYPE 69 85 93

Figure S16.  Get High-res Image Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HMGCR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S160.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
HMGCR MUTATED 5 6 0
HMGCR WILD-TYPE 123 98 26
'PHGDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.091 (Fisher's exact test), Q value = 1

Table S161.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
PHGDH MUTATED 5 6 1
PHGDH WILD-TYPE 68 99 99
'PHGDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S162.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
PHGDH MUTATED 5 6 1
PHGDH WILD-TYPE 87 106 73
'PHGDH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S163.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PHGDH MUTATED 3 1 2 2
PHGDH WILD-TYPE 43 57 24 36
'PHGDH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S164.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PHGDH MUTATED 2 2 0 4
PHGDH WILD-TYPE 25 56 34 45
'PHGDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S165.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
PHGDH MUTATED 4 4 4
PHGDH WILD-TYPE 94 78 94
'PHGDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S166.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
PHGDH MUTATED 2 6 4
PHGDH WILD-TYPE 73 123 70
'PHGDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S167.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
PHGDH MUTATED 3 4 2 3 0
PHGDH WILD-TYPE 36 74 59 82 6
'PHGDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S168.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
PHGDH MUTATED 1 6 3 2
PHGDH WILD-TYPE 75 102 48 32
'PHGDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S169.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
PHGDH MUTATED 2 5 5
PHGDH WILD-TYPE 71 80 95
'PHGDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S170.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
PHGDH MUTATED 6 4 2
PHGDH WILD-TYPE 122 100 24
'SLC38A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0554 (Fisher's exact test), Q value = 1

Table S171.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
SLC38A4 MUTATED 14 13 7
SLC38A4 WILD-TYPE 59 92 93
'SLC38A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S172.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
SLC38A4 MUTATED 11 18 5
SLC38A4 WILD-TYPE 81 94 69
'SLC38A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S173.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SLC38A4 MUTATED 7 7 4 2
SLC38A4 WILD-TYPE 39 51 22 36
'SLC38A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S174.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SLC38A4 MUTATED 4 6 3 7
SLC38A4 WILD-TYPE 23 52 31 42
'SLC38A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00735 (Fisher's exact test), Q value = 1

Table S175.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
SLC38A4 MUTATED 9 18 7
SLC38A4 WILD-TYPE 89 64 91

Figure S17.  Get High-res Image Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC38A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0342 (Fisher's exact test), Q value = 1

Table S176.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
SLC38A4 MUTATED 5 23 6
SLC38A4 WILD-TYPE 70 106 68

Figure S18.  Get High-res Image Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S177.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
SLC38A4 MUTATED 5 10 8 9 0
SLC38A4 WILD-TYPE 34 68 53 76 6
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S178.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
SLC38A4 MUTATED 12 10 6 4
SLC38A4 WILD-TYPE 64 98 45 30
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S179.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
SLC38A4 MUTATED 12 9 9
SLC38A4 WILD-TYPE 61 76 91
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S180.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
SLC38A4 MUTATED 17 9 4
SLC38A4 WILD-TYPE 111 95 22
'CDK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S181.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
CDK4 MUTATED 2 3 2
CDK4 WILD-TYPE 71 102 98
'CDK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S182.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
CDK4 MUTATED 1 3 3
CDK4 WILD-TYPE 91 109 71
'CDK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 1

Table S183.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CDK4 MUTATED 2 0 2 0
CDK4 WILD-TYPE 44 58 24 38

Figure S19.  Get High-res Image Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S184.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CDK4 MUTATED 1 1 1 1
CDK4 WILD-TYPE 26 57 33 48
'CDK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S185.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
CDK4 MUTATED 3 2 2
CDK4 WILD-TYPE 95 80 96
'CDK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S186.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
CDK4 MUTATED 3 2 2
CDK4 WILD-TYPE 72 127 72
'CDK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S187.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
CDK4 MUTATED 1 2 2 1 0
CDK4 WILD-TYPE 38 76 59 84 6
'CDK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S188.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
CDK4 MUTATED 1 2 2 1
CDK4 WILD-TYPE 75 106 49 33
'CDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S189.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
CDK4 MUTATED 1 3 2
CDK4 WILD-TYPE 72 82 98
'CDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S190.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
CDK4 MUTATED 1 4 1
CDK4 WILD-TYPE 127 100 25
'FAM58A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S191.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
FAM58A MUTATED 2 3 0
FAM58A WILD-TYPE 71 102 100
'FAM58A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S192.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
FAM58A MUTATED 1 3 1
FAM58A WILD-TYPE 91 109 73
'FAM58A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S193.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
FAM58A MUTATED 1 1 1 1
FAM58A WILD-TYPE 45 57 25 37
'FAM58A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S194.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
FAM58A MUTATED 0 1 1 2
FAM58A WILD-TYPE 27 57 33 47
'FAM58A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S195.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
FAM58A MUTATED 2 3 0
FAM58A WILD-TYPE 96 79 98
'FAM58A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S196.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
FAM58A MUTATED 2 3 0
FAM58A WILD-TYPE 73 126 74
'FAM58A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S197.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
FAM58A MUTATED 0 1 3 1 0
FAM58A WILD-TYPE 39 77 58 84 6
'FAM58A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00684 (Fisher's exact test), Q value = 1

Table S198.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
FAM58A MUTATED 5 0 0 0
FAM58A WILD-TYPE 71 108 51 34

Figure S20.  Get High-res Image Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM58A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0016 (Fisher's exact test), Q value = 1

Table S199.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
FAM58A MUTATED 5 0 0
FAM58A WILD-TYPE 68 85 100

Figure S21.  Get High-res Image Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FAM58A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S200.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
FAM58A MUTATED 4 1 0
FAM58A WILD-TYPE 124 103 26
'EMG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S201.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
EMG1 MUTATED 3 4 2
EMG1 WILD-TYPE 70 101 98
'EMG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S202.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
EMG1 MUTATED 4 3 2
EMG1 WILD-TYPE 88 109 72
'EMG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S203.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
EMG1 MUTATED 2 1 1 0
EMG1 WILD-TYPE 44 57 25 38
'EMG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S204.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
EMG1 MUTATED 1 1 2 0
EMG1 WILD-TYPE 26 57 32 49
'EMG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S205.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
EMG1 MUTATED 2 2 5
EMG1 WILD-TYPE 96 80 93
'EMG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S206.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
EMG1 MUTATED 3 2 4
EMG1 WILD-TYPE 72 127 70
'EMG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S207.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
EMG1 MUTATED 1 4 3 1 0
EMG1 WILD-TYPE 38 74 58 84 6
'EMG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S208.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
EMG1 MUTATED 2 4 2 1
EMG1 WILD-TYPE 74 104 49 33
'EMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S209.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
EMG1 MUTATED 2 3 4
EMG1 WILD-TYPE 71 82 96
'EMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S210.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
EMG1 MUTATED 2 6 1
EMG1 WILD-TYPE 126 98 25
'RQCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S211.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
RQCD1 MUTATED 4 1 4
RQCD1 WILD-TYPE 69 104 96
'RQCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S212.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
RQCD1 MUTATED 5 1 3
RQCD1 WILD-TYPE 87 111 71
'RQCD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 1

Table S213.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RQCD1 MUTATED 0 3 2 0
RQCD1 WILD-TYPE 46 55 24 38
'RQCD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S214.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
RQCD1 MUTATED 0 2 1 2
RQCD1 WILD-TYPE 27 56 33 47
'RQCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S215.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
RQCD1 MUTATED 5 2 2
RQCD1 WILD-TYPE 93 80 96
'RQCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S216.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
RQCD1 MUTATED 3 4 2
RQCD1 WILD-TYPE 72 125 72
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S217.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
RQCD1 MUTATED 1 1 4 3 0
RQCD1 WILD-TYPE 38 77 57 82 6
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S218.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
RQCD1 MUTATED 1 5 2 1
RQCD1 WILD-TYPE 75 103 49 33
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 1

Table S219.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
RQCD1 MUTATED 0 2 7
RQCD1 WILD-TYPE 73 83 93

Figure S22.  Get High-res Image Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RQCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S220.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
RQCD1 MUTATED 5 3 1
RQCD1 WILD-TYPE 123 101 25
'HSD11B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S221.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
HSD11B1 MUTATED 4 7 3
HSD11B1 WILD-TYPE 69 98 97
'HSD11B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S222.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
HSD11B1 MUTATED 5 8 1
HSD11B1 WILD-TYPE 87 104 73
'HSD11B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S223.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
HSD11B1 MUTATED 3 2 0 1
HSD11B1 WILD-TYPE 43 56 26 37
'HSD11B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S224.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
HSD11B1 MUTATED 3 1 1 1
HSD11B1 WILD-TYPE 24 57 33 48
'HSD11B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S225.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
HSD11B1 MUTATED 6 6 2
HSD11B1 WILD-TYPE 92 76 96
'HSD11B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S226.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
HSD11B1 MUTATED 2 10 2
HSD11B1 WILD-TYPE 73 119 72
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S227.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
HSD11B1 MUTATED 4 3 4 3 0
HSD11B1 WILD-TYPE 35 75 57 82 6
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S228.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
HSD11B1 MUTATED 4 5 3 2
HSD11B1 WILD-TYPE 72 103 48 32
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S229.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
HSD11B1 MUTATED 4 3 5
HSD11B1 WILD-TYPE 69 82 95
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S230.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
HSD11B1 MUTATED 6 4 2
HSD11B1 WILD-TYPE 122 100 24
'DMC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S231.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
DMC1 MUTATED 4 6 2
DMC1 WILD-TYPE 69 99 98
'DMC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S232.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
DMC1 MUTATED 5 6 1
DMC1 WILD-TYPE 87 106 73
'DMC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S233.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DMC1 MUTATED 5 2 1 0
DMC1 WILD-TYPE 41 56 25 38
'DMC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S234.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DMC1 MUTATED 3 2 2 1
DMC1 WILD-TYPE 24 56 32 48
'DMC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 1

Table S235.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
DMC1 MUTATED 0 5 7
DMC1 WILD-TYPE 98 77 91

Figure S23.  Get High-res Image Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DMC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S236.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
DMC1 MUTATED 2 6 4
DMC1 WILD-TYPE 73 123 70
'DMC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0921 (Fisher's exact test), Q value = 1

Table S237.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
DMC1 MUTATED 1 8 2 1 0
DMC1 WILD-TYPE 38 70 59 84 6
'DMC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S238.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
DMC1 MUTATED 3 5 3 1
DMC1 WILD-TYPE 73 103 48 33
'DMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 1

Table S239.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
DMC1 MUTATED 1 8 2
DMC1 WILD-TYPE 72 77 98

Figure S24.  Get High-res Image Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00978 (Fisher's exact test), Q value = 1

Table S240.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
DMC1 MUTATED 1 9 1
DMC1 WILD-TYPE 127 95 25

Figure S25.  Get High-res Image Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NRK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S241.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
NRK MUTATED 9 23 12
NRK WILD-TYPE 64 82 88
'NRK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S242.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
NRK MUTATED 18 18 8
NRK WILD-TYPE 74 94 66
'NRK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S243.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NRK MUTATED 7 4 3 3
NRK WILD-TYPE 39 54 23 35
'NRK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S244.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NRK MUTATED 3 5 2 7
NRK WILD-TYPE 24 53 32 42
'NRK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S245.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
NRK MUTATED 19 14 11
NRK WILD-TYPE 79 68 87
'NRK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S246.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
NRK MUTATED 16 18 10
NRK WILD-TYPE 59 111 64
'NRK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S247.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
NRK MUTATED 6 11 8 12 2
NRK WILD-TYPE 33 67 53 73 4
'NRK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S248.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
NRK MUTATED 15 15 5 4
NRK WILD-TYPE 61 93 46 30
'NRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0544 (Fisher's exact test), Q value = 1

Table S249.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
NRK MUTATED 16 11 9
NRK WILD-TYPE 57 74 91
'NRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S250.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
NRK MUTATED 18 15 3
NRK WILD-TYPE 110 89 23
'TAF1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S251.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
TAF1A MUTATED 4 5 4
TAF1A WILD-TYPE 69 100 96
'TAF1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S252.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
TAF1A MUTATED 3 6 4
TAF1A WILD-TYPE 89 106 70
'TAF1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S253.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TAF1A MUTATED 3 3 1 3
TAF1A WILD-TYPE 43 55 25 35
'TAF1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S254.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
TAF1A MUTATED 1 3 2 4
TAF1A WILD-TYPE 26 55 32 45
'TAF1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S255.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
TAF1A MUTATED 5 4 4
TAF1A WILD-TYPE 93 78 94
'TAF1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S256.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
TAF1A MUTATED 4 6 3
TAF1A WILD-TYPE 71 123 71
'TAF1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S257.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
TAF1A MUTATED 2 2 2 7 0
TAF1A WILD-TYPE 37 76 59 78 6
'TAF1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S258.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
TAF1A MUTATED 4 6 2 1
TAF1A WILD-TYPE 72 102 49 33
'TAF1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S259.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
TAF1A MUTATED 3 4 6
TAF1A WILD-TYPE 70 81 94
'TAF1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S260.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
TAF1A MUTATED 8 4 1
TAF1A WILD-TYPE 120 100 25
'OXA1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S261.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
OXA1L MUTATED 3 2 3
OXA1L WILD-TYPE 70 103 97
'OXA1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S262.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
OXA1L MUTATED 4 2 2
OXA1L WILD-TYPE 88 110 72
'OXA1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S263.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
OXA1L MUTATED 1 2 1 1
OXA1L WILD-TYPE 45 56 25 37
'OXA1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S264.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
OXA1L MUTATED 0 1 1 3
OXA1L WILD-TYPE 27 57 33 46
'OXA1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S265.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
OXA1L MUTATED 4 3 1
OXA1L WILD-TYPE 94 79 97
'OXA1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S266.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
OXA1L MUTATED 3 4 1
OXA1L WILD-TYPE 72 125 73
'OXA1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S267.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
OXA1L MUTATED 2 1 3 2 0
OXA1L WILD-TYPE 37 77 58 83 6
'OXA1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S268.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
OXA1L MUTATED 4 3 0 1
OXA1L WILD-TYPE 72 105 51 33
'OXA1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0869 (Fisher's exact test), Q value = 1

Table S269.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
OXA1L MUTATED 3 0 5
OXA1L WILD-TYPE 70 85 95
'OXA1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S270.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
OXA1L MUTATED 6 1 1
OXA1L WILD-TYPE 122 103 25
'COL3A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S271.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
COL3A1 MUTATED 15 18 24
COL3A1 WILD-TYPE 58 87 76
'COL3A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S272.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
COL3A1 MUTATED 18 24 15
COL3A1 WILD-TYPE 74 88 59
'COL3A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S273.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
COL3A1 MUTATED 9 12 6 9
COL3A1 WILD-TYPE 37 46 20 29
'COL3A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S274.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
COL3A1 MUTATED 7 12 3 14
COL3A1 WILD-TYPE 20 46 31 35
'COL3A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S275.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
COL3A1 MUTATED 17 16 24
COL3A1 WILD-TYPE 81 66 74
'COL3A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S276.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
COL3A1 MUTATED 16 21 20
COL3A1 WILD-TYPE 59 108 54
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S277.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
COL3A1 MUTATED 7 19 13 14 1
COL3A1 WILD-TYPE 32 59 48 71 5
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S278.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
COL3A1 MUTATED 15 17 14 8
COL3A1 WILD-TYPE 61 91 37 26
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S279.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
COL3A1 MUTATED 15 19 20
COL3A1 WILD-TYPE 58 66 80
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S280.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
COL3A1 MUTATED 30 20 4
COL3A1 WILD-TYPE 98 84 22
'TCHHL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S281.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
TCHHL1 MUTATED 15 14 10
TCHHL1 WILD-TYPE 58 91 90
'TCHHL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S282.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
TCHHL1 MUTATED 14 18 7
TCHHL1 WILD-TYPE 78 94 67
'TCHHL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 1

Table S283.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TCHHL1 MUTATED 11 3 4 7
TCHHL1 WILD-TYPE 35 55 22 31

Figure S26.  Get High-res Image Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TCHHL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S284.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
TCHHL1 MUTATED 7 10 4 4
TCHHL1 WILD-TYPE 20 48 30 45
'TCHHL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S285.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
TCHHL1 MUTATED 11 16 12
TCHHL1 WILD-TYPE 87 66 86
'TCHHL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S286.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
TCHHL1 MUTATED 6 23 10
TCHHL1 WILD-TYPE 69 106 64
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S287.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
TCHHL1 MUTATED 7 11 9 11 1
TCHHL1 WILD-TYPE 32 67 52 74 5
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S288.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
TCHHL1 MUTATED 10 14 9 6
TCHHL1 WILD-TYPE 66 94 42 28
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S289.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
TCHHL1 MUTATED 13 12 12
TCHHL1 WILD-TYPE 60 73 88
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S290.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
TCHHL1 MUTATED 19 13 5
TCHHL1 WILD-TYPE 109 91 21
'IL5RA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S291.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
IL5RA MUTATED 3 8 6
IL5RA WILD-TYPE 70 97 94
'IL5RA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S292.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
IL5RA MUTATED 7 6 4
IL5RA WILD-TYPE 85 106 70
'IL5RA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S293.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
IL5RA MUTATED 3 3 1 4
IL5RA WILD-TYPE 43 55 25 34
'IL5RA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S294.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
IL5RA MUTATED 1 5 0 5
IL5RA WILD-TYPE 26 53 34 44
'IL5RA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S295.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
IL5RA MUTATED 5 7 5
IL5RA WILD-TYPE 93 75 93
'IL5RA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S296.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
IL5RA MUTATED 7 7 3
IL5RA WILD-TYPE 68 122 71
'IL5RA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S297.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
IL5RA MUTATED 1 6 6 3 0
IL5RA WILD-TYPE 38 72 55 82 6
'IL5RA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S298.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
IL5RA MUTATED 7 5 3 1
IL5RA WILD-TYPE 69 103 48 33
'IL5RA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S299.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
IL5RA MUTATED 7 3 6
IL5RA WILD-TYPE 66 82 94
'IL5RA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S300.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
IL5RA MUTATED 10 6 0
IL5RA WILD-TYPE 118 98 26
'NBPF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S301.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
NBPF7 MUTATED 2 6 5
NBPF7 WILD-TYPE 71 99 95
'NBPF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S302.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
NBPF7 MUTATED 5 6 2
NBPF7 WILD-TYPE 87 106 72
'NBPF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S303.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NBPF7 MUTATED 2 2 2 1
NBPF7 WILD-TYPE 44 56 24 37
'NBPF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S304.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NBPF7 MUTATED 2 1 1 3
NBPF7 WILD-TYPE 25 57 33 46
'NBPF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S305.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
NBPF7 MUTATED 8 2 3
NBPF7 WILD-TYPE 90 80 95
'NBPF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S306.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
NBPF7 MUTATED 6 6 1
NBPF7 WILD-TYPE 69 123 73
'NBPF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0955 (Fisher's exact test), Q value = 1

Table S307.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
NBPF7 MUTATED 0 2 7 4 0
NBPF7 WILD-TYPE 39 76 54 81 6
'NBPF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S308.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
NBPF7 MUTATED 7 4 2 0
NBPF7 WILD-TYPE 69 104 49 34
'NBPF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 1

Table S309.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
NBPF7 MUTATED 5 0 8
NBPF7 WILD-TYPE 68 85 92

Figure S27.  Get High-res Image Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NBPF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0389 (Fisher's exact test), Q value = 1

Table S310.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
NBPF7 MUTATED 11 2 0
NBPF7 WILD-TYPE 117 102 26

Figure S28.  Get High-res Image Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KEL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 1

Table S311.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
KEL MUTATED 11 20 6
KEL WILD-TYPE 62 85 94

Figure S29.  Get High-res Image Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KEL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S312.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
KEL MUTATED 13 18 6
KEL WILD-TYPE 79 94 68
'KEL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S313.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
KEL MUTATED 5 8 3 7
KEL WILD-TYPE 41 50 23 31
'KEL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S314.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
KEL MUTATED 3 6 5 9
KEL WILD-TYPE 24 52 29 40
'KEL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0019 (Fisher's exact test), Q value = 1

Table S315.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
KEL MUTATED 18 15 4
KEL WILD-TYPE 80 67 94

Figure S30.  Get High-res Image Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KEL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 1

Table S316.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
KEL MUTATED 12 22 3
KEL WILD-TYPE 63 107 71

Figure S31.  Get High-res Image Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KEL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S317.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
KEL MUTATED 7 7 5 15 0
KEL WILD-TYPE 32 71 56 70 6
'KEL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S318.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
KEL MUTATED 11 13 4 6
KEL WILD-TYPE 65 95 47 28
'KEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S319.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
KEL MUTATED 12 8 14
KEL WILD-TYPE 61 77 86
'KEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0957 (Fisher's exact test), Q value = 1

Table S320.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
KEL MUTATED 22 8 4
KEL WILD-TYPE 106 96 22
'C7ORF58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S321.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
C7ORF58 MUTATED 7 11 17
C7ORF58 WILD-TYPE 66 94 83
'C7ORF58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S322.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
C7ORF58 MUTATED 16 11 8
C7ORF58 WILD-TYPE 76 101 66
'C7ORF58 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0895 (Fisher's exact test), Q value = 1

Table S323.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C7ORF58 MUTATED 8 8 0 7
C7ORF58 WILD-TYPE 38 50 26 31
'C7ORF58 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00262 (Fisher's exact test), Q value = 1

Table S324.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
C7ORF58 MUTATED 6 13 0 4
C7ORF58 WILD-TYPE 21 45 34 45

Figure S32.  Get High-res Image Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S325.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
C7ORF58 MUTATED 12 12 11
C7ORF58 WILD-TYPE 86 70 87
'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S326.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
C7ORF58 MUTATED 7 20 8
C7ORF58 WILD-TYPE 68 109 66
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S327.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
C7ORF58 MUTATED 7 8 5 12 1
C7ORF58 WILD-TYPE 32 70 56 73 5
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S328.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
C7ORF58 MUTATED 10 12 5 6
C7ORF58 WILD-TYPE 66 96 46 28
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0716 (Fisher's exact test), Q value = 1

Table S329.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
C7ORF58 MUTATED 14 6 12
C7ORF58 WILD-TYPE 59 79 88
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S330.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
C7ORF58 MUTATED 16 11 5
C7ORF58 WILD-TYPE 112 93 21
'NBPF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S331.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
NBPF1 MUTATED 12 12 15
NBPF1 WILD-TYPE 61 93 85
'NBPF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S332.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
NBPF1 MUTATED 18 12 9
NBPF1 WILD-TYPE 74 100 65
'NBPF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0336 (Fisher's exact test), Q value = 1

Table S333.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NBPF1 MUTATED 9 6 2 12
NBPF1 WILD-TYPE 37 52 24 26

Figure S33.  Get High-res Image Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NBPF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S334.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NBPF1 MUTATED 5 12 6 6
NBPF1 WILD-TYPE 22 46 28 43
'NBPF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S335.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
NBPF1 MUTATED 18 10 11
NBPF1 WILD-TYPE 80 72 87
'NBPF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S336.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
NBPF1 MUTATED 15 16 8
NBPF1 WILD-TYPE 60 113 66
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S337.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
NBPF1 MUTATED 5 6 13 14 0
NBPF1 WILD-TYPE 34 72 48 71 6
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S338.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
NBPF1 MUTATED 10 14 10 4
NBPF1 WILD-TYPE 66 94 41 30
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 1

Table S339.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
NBPF1 MUTATED 12 6 20
NBPF1 WILD-TYPE 61 79 80

Figure S34.  Get High-res Image Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NBPF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S340.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
NBPF1 MUTATED 22 12 4
NBPF1 WILD-TYPE 106 92 22
'TMEM216 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S341.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
TMEM216 MUTATED 0 4 4
TMEM216 WILD-TYPE 73 101 96
'TMEM216 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S342.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
TMEM216 MUTATED 1 4 3
TMEM216 WILD-TYPE 91 108 71
'TMEM216 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0574 (Fisher's exact test), Q value = 1

Table S343.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TMEM216 MUTATED 4 0 2 1
TMEM216 WILD-TYPE 42 58 24 37
'TMEM216 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S344.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
TMEM216 MUTATED 1 1 2 3
TMEM216 WILD-TYPE 26 57 32 46
'TMEM216 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S345.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
TMEM216 MUTATED 2 3 3
TMEM216 WILD-TYPE 96 79 95
'TMEM216 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S346.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
TMEM216 MUTATED 2 3 3
TMEM216 WILD-TYPE 73 126 71
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S347.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
TMEM216 MUTATED 0 3 2 2 1
TMEM216 WILD-TYPE 39 75 59 83 5
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S348.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
TMEM216 MUTATED 3 1 3 1
TMEM216 WILD-TYPE 73 107 48 33
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S349.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
TMEM216 MUTATED 4 2 2
TMEM216 WILD-TYPE 69 83 98
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S350.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
TMEM216 MUTATED 3 5 0
TMEM216 WILD-TYPE 125 99 26
'DOM3Z MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S351.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
DOM3Z MUTATED 2 3 2
DOM3Z WILD-TYPE 71 102 98
'DOM3Z MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S352.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
DOM3Z MUTATED 4 2 1
DOM3Z WILD-TYPE 88 110 73
'DOM3Z MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S353.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DOM3Z MUTATED 1 2 0 1
DOM3Z WILD-TYPE 45 56 26 37
'DOM3Z MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.096 (Fisher's exact test), Q value = 1

Table S354.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DOM3Z MUTATED 1 0 0 3
DOM3Z WILD-TYPE 26 58 34 46
'DOM3Z MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S355.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
DOM3Z MUTATED 4 1 2
DOM3Z WILD-TYPE 94 81 96
'DOM3Z MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S356.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
DOM3Z MUTATED 4 2 1
DOM3Z WILD-TYPE 71 127 73
'DOM3Z MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S357.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
DOM3Z MUTATED 0 1 2 4 0
DOM3Z WILD-TYPE 39 77 59 81 6
'DOM3Z MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S358.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
DOM3Z MUTATED 2 5 0 0
DOM3Z WILD-TYPE 74 103 51 34
'DOM3Z MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S359.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
DOM3Z MUTATED 1 2 4
DOM3Z WILD-TYPE 72 83 96
'DOM3Z MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S360.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
DOM3Z MUTATED 6 1 0
DOM3Z WILD-TYPE 122 103 26
'BCLAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S361.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
BCLAF1 MUTATED 10 20 18
BCLAF1 WILD-TYPE 63 85 82
'BCLAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S362.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
BCLAF1 MUTATED 20 19 9
BCLAF1 WILD-TYPE 72 93 65
'BCLAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S363.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
BCLAF1 MUTATED 9 11 2 11
BCLAF1 WILD-TYPE 37 47 24 27
'BCLAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S364.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
BCLAF1 MUTATED 7 11 6 9
BCLAF1 WILD-TYPE 20 47 28 40
'BCLAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S365.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
BCLAF1 MUTATED 17 14 17
BCLAF1 WILD-TYPE 81 68 81
'BCLAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S366.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
BCLAF1 MUTATED 13 22 13
BCLAF1 WILD-TYPE 62 107 61
'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S367.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
BCLAF1 MUTATED 7 12 9 16 1
BCLAF1 WILD-TYPE 32 66 52 69 5
'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S368.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
BCLAF1 MUTATED 14 16 11 4
BCLAF1 WILD-TYPE 62 92 40 30
'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S369.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
BCLAF1 MUTATED 11 12 20
BCLAF1 WILD-TYPE 62 73 80
'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S370.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
BCLAF1 MUTATED 25 15 3
BCLAF1 WILD-TYPE 103 89 23
'ZFX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S371.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
ZFX MUTATED 4 7 3
ZFX WILD-TYPE 69 98 97
'ZFX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S372.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
ZFX MUTATED 3 7 4
ZFX WILD-TYPE 89 105 70
'ZFX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S373.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ZFX MUTATED 1 4 0 2
ZFX WILD-TYPE 45 54 26 36
'ZFX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S374.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ZFX MUTATED 1 3 1 2
ZFX WILD-TYPE 26 55 33 47
'ZFX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0284 (Fisher's exact test), Q value = 1

Table S375.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
ZFX MUTATED 5 8 1
ZFX WILD-TYPE 93 74 97

Figure S35.  Get High-res Image Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZFX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S376.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
ZFX MUTATED 3 10 1
ZFX WILD-TYPE 72 119 73
'ZFX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S377.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
ZFX MUTATED 1 2 3 8 0
ZFX WILD-TYPE 38 76 58 77 6
'ZFX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S378.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
ZFX MUTATED 6 6 1 1
ZFX WILD-TYPE 70 102 50 33
'ZFX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0972 (Fisher's exact test), Q value = 1

Table S379.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
ZFX MUTATED 6 1 5
ZFX WILD-TYPE 67 84 95
'ZFX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0685 (Fisher's exact test), Q value = 1

Table S380.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
ZFX MUTATED 10 2 0
ZFX WILD-TYPE 118 102 26
'BRAF MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.015

Table S381.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
BRAF MUTATED 22 50 68
BRAF WILD-TYPE 51 55 32

Figure S36.  Get High-res Image Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRAF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 1

Table S382.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
BRAF MUTATED 45 67 28
BRAF WILD-TYPE 47 45 46

Figure S37.  Get High-res Image Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BRAF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S383.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
BRAF MUTATED 24 24 14 21
BRAF WILD-TYPE 22 34 12 17
'BRAF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S384.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
BRAF MUTATED 13 25 19 26
BRAF WILD-TYPE 14 33 15 23
'BRAF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00794 (Fisher's exact test), Q value = 1

Table S385.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
BRAF MUTATED 38 42 60
BRAF WILD-TYPE 60 40 38

Figure S38.  Get High-res Image Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BRAF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.015

Table S386.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
BRAF MUTATED 20 69 51
BRAF WILD-TYPE 55 60 23

Figure S39.  Get High-res Image Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.86

Table S387.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
BRAF MUTATED 25 46 21 37 6
BRAF WILD-TYPE 14 32 40 48 0

Figure S40.  Get High-res Image Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BRAF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S388.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
BRAF MUTATED 33 54 26 22
BRAF WILD-TYPE 43 54 25 12
'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.21

Table S389.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
BRAF MUTATED 41 55 34
BRAF WILD-TYPE 32 30 66

Figure S41.  Get High-res Image Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0644 (Fisher's exact test), Q value = 1

Table S390.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
BRAF MUTATED 55 60 15
BRAF WILD-TYPE 73 44 11
'SAG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S391.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
SAG MUTATED 5 3 3
SAG WILD-TYPE 68 102 97
'SAG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S392.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
SAG MUTATED 3 6 2
SAG WILD-TYPE 89 106 72
'SAG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S393.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SAG MUTATED 2 1 2 2
SAG WILD-TYPE 44 57 24 36
'SAG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S394.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SAG MUTATED 3 1 2 1
SAG WILD-TYPE 24 57 32 48
'SAG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S395.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
SAG MUTATED 4 2 5
SAG WILD-TYPE 94 80 93
'SAG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S396.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
SAG MUTATED 3 3 5
SAG WILD-TYPE 72 126 69
'SAG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S397.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
SAG MUTATED 0 4 4 3 0
SAG WILD-TYPE 39 74 57 82 6
'SAG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S398.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
SAG MUTATED 2 4 5 0
SAG WILD-TYPE 74 104 46 34
'SAG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S399.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
SAG MUTATED 4 3 4
SAG WILD-TYPE 69 82 96
'SAG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S400.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
SAG MUTATED 4 7 0
SAG WILD-TYPE 124 97 26
'OR51S1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S401.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
OR51S1 MUTATED 7 13 10
OR51S1 WILD-TYPE 66 92 90
'OR51S1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S402.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
OR51S1 MUTATED 10 13 7
OR51S1 WILD-TYPE 82 99 67
'OR51S1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S403.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
OR51S1 MUTATED 3 9 2 5
OR51S1 WILD-TYPE 43 49 24 33
'OR51S1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S404.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
OR51S1 MUTATED 1 5 5 8
OR51S1 WILD-TYPE 26 53 29 41
'OR51S1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S405.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
OR51S1 MUTATED 9 11 10
OR51S1 WILD-TYPE 89 71 88
'OR51S1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S406.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
OR51S1 MUTATED 7 16 7
OR51S1 WILD-TYPE 68 113 67
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S407.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
OR51S1 MUTATED 1 7 9 10 2
OR51S1 WILD-TYPE 38 71 52 75 4
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S408.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
OR51S1 MUTATED 10 12 5 2
OR51S1 WILD-TYPE 66 96 46 32
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S409.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
OR51S1 MUTATED 11 5 13
OR51S1 WILD-TYPE 62 80 87
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S410.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
OR51S1 MUTATED 18 10 1
OR51S1 WILD-TYPE 110 94 25
'USP17L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S411.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
USP17L2 MUTATED 3 10 9
USP17L2 WILD-TYPE 70 95 91
'USP17L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S412.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
USP17L2 MUTATED 9 11 2
USP17L2 WILD-TYPE 83 101 72
'USP17L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S413.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
USP17L2 MUTATED 5 5 1 3
USP17L2 WILD-TYPE 41 53 25 35
'USP17L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S414.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
USP17L2 MUTATED 3 6 3 2
USP17L2 WILD-TYPE 24 52 31 47
'USP17L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S415.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
USP17L2 MUTATED 6 10 6
USP17L2 WILD-TYPE 92 72 92
'USP17L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S416.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
USP17L2 MUTATED 6 11 5
USP17L2 WILD-TYPE 69 118 69
'USP17L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S417.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
USP17L2 MUTATED 2 7 5 7 0
USP17L2 WILD-TYPE 37 71 56 78 6
'USP17L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S418.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
USP17L2 MUTATED 4 10 5 2
USP17L2 WILD-TYPE 72 98 46 32
'USP17L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S419.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
USP17L2 MUTATED 6 6 9
USP17L2 WILD-TYPE 67 79 91
'USP17L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S420.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
USP17L2 MUTATED 11 8 2
USP17L2 WILD-TYPE 117 96 24
'LRPPRC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S421.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
LRPPRC MUTATED 5 5 5
LRPPRC WILD-TYPE 68 100 95
'LRPPRC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S422.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
LRPPRC MUTATED 4 6 5
LRPPRC WILD-TYPE 88 106 69
'LRPPRC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S423.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
LRPPRC MUTATED 4 5 0 4
LRPPRC WILD-TYPE 42 53 26 34
'LRPPRC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S424.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
LRPPRC MUTATED 2 6 1 4
LRPPRC WILD-TYPE 25 52 33 45
'LRPPRC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S425.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
LRPPRC MUTATED 3 5 7
LRPPRC WILD-TYPE 95 77 91
'LRPPRC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S426.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
LRPPRC MUTATED 2 7 6
LRPPRC WILD-TYPE 73 122 68
'LRPPRC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S427.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
LRPPRC MUTATED 3 6 2 3 0
LRPPRC WILD-TYPE 36 72 59 82 6
'LRPPRC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S428.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
LRPPRC MUTATED 4 6 3 1
LRPPRC WILD-TYPE 72 102 48 33
'LRPPRC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S429.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
LRPPRC MUTATED 1 7 6
LRPPRC WILD-TYPE 72 78 94
'LRPPRC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S430.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
LRPPRC MUTATED 6 7 1
LRPPRC WILD-TYPE 122 97 25
'BTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S431.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
BTK MUTATED 1 6 9
BTK WILD-TYPE 72 99 91
'BTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S432.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
BTK MUTATED 6 9 1
BTK WILD-TYPE 86 103 73
'BTK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S433.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
BTK MUTATED 2 4 1 5
BTK WILD-TYPE 44 54 25 33
'BTK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S434.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
BTK MUTATED 0 6 3 3
BTK WILD-TYPE 27 52 31 46
'BTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00148 (Fisher's exact test), Q value = 1

Table S435.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
BTK MUTATED 1 11 4
BTK WILD-TYPE 97 71 94

Figure S42.  Get High-res Image Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S436.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
BTK MUTATED 2 11 3
BTK WILD-TYPE 73 118 71
'BTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S437.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
BTK MUTATED 3 3 5 4 0
BTK WILD-TYPE 36 75 56 81 6
'BTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S438.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
BTK MUTATED 2 5 6 2
BTK WILD-TYPE 74 103 45 32
'BTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S439.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
BTK MUTATED 7 4 4
BTK WILD-TYPE 66 81 96
'BTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S440.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
BTK MUTATED 8 6 1
BTK WILD-TYPE 120 98 25
'DSG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S441.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
DSG3 MUTATED 14 18 15
DSG3 WILD-TYPE 59 87 85
'DSG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S442.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
DSG3 MUTATED 16 18 13
DSG3 WILD-TYPE 76 94 61
'DSG3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0688 (Fisher's exact test), Q value = 1

Table S443.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DSG3 MUTATED 7 6 4 12
DSG3 WILD-TYPE 39 52 22 26
'DSG3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S444.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DSG3 MUTATED 5 10 4 10
DSG3 WILD-TYPE 22 48 30 39
'DSG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S445.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
DSG3 MUTATED 17 13 17
DSG3 WILD-TYPE 81 69 81
'DSG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S446.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
DSG3 MUTATED 15 20 12
DSG3 WILD-TYPE 60 109 62
'DSG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S447.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
DSG3 MUTATED 3 13 11 18 1
DSG3 WILD-TYPE 36 65 50 67 5
'DSG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S448.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
DSG3 MUTATED 15 18 10 3
DSG3 WILD-TYPE 61 90 41 31
'DSG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0974 (Fisher's exact test), Q value = 1

Table S449.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
DSG3 MUTATED 17 9 18
DSG3 WILD-TYPE 56 76 82
'DSG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S450.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
DSG3 MUTATED 25 17 2
DSG3 WILD-TYPE 103 87 24
'C1QTNF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S451.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
C1QTNF9 MUTATED 4 8 4
C1QTNF9 WILD-TYPE 69 97 96
'C1QTNF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S452.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
C1QTNF9 MUTATED 5 8 3
C1QTNF9 WILD-TYPE 87 104 71
'C1QTNF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S453.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C1QTNF9 MUTATED 2 5 2 1
C1QTNF9 WILD-TYPE 44 53 24 37
'C1QTNF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S454.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
C1QTNF9 MUTATED 1 4 3 2
C1QTNF9 WILD-TYPE 26 54 31 47
'C1QTNF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S455.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
C1QTNF9 MUTATED 6 5 5
C1QTNF9 WILD-TYPE 92 77 93
'C1QTNF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S456.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
C1QTNF9 MUTATED 3 10 3
C1QTNF9 WILD-TYPE 72 119 71
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S457.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
C1QTNF9 MUTATED 1 6 4 3 1
C1QTNF9 WILD-TYPE 38 72 57 82 5
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S458.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
C1QTNF9 MUTATED 3 7 5 0
C1QTNF9 WILD-TYPE 73 101 46 34
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S459.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
C1QTNF9 MUTATED 5 5 5
C1QTNF9 WILD-TYPE 68 80 95
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S460.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
C1QTNF9 MUTATED 7 8 0
C1QTNF9 WILD-TYPE 121 96 26
'BLM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S461.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
BLM MUTATED 3 8 4
BLM WILD-TYPE 70 97 96
'BLM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S462.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
BLM MUTATED 7 4 4
BLM WILD-TYPE 85 108 70
'BLM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S463.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
BLM MUTATED 1 6 1 3
BLM WILD-TYPE 45 52 25 35
'BLM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S464.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
BLM MUTATED 1 3 1 6
BLM WILD-TYPE 26 55 33 43
'BLM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S465.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
BLM MUTATED 8 3 4
BLM WILD-TYPE 90 79 94
'BLM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S466.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
BLM MUTATED 4 8 3
BLM WILD-TYPE 71 121 71
'BLM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S467.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
BLM MUTATED 3 1 3 6 1
BLM WILD-TYPE 36 77 58 79 5
'BLM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S468.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
BLM MUTATED 6 6 2 0
BLM WILD-TYPE 70 102 49 34
'BLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0037 (Fisher's exact test), Q value = 1

Table S469.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
BLM MUTATED 4 0 10
BLM WILD-TYPE 69 85 90

Figure S43.  Get High-res Image Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S470.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
BLM MUTATED 11 3 0
BLM WILD-TYPE 117 101 26
'ACSM2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S471.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
ACSM2B MUTATED 15 17 12
ACSM2B WILD-TYPE 58 88 88
'ACSM2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S472.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
ACSM2B MUTATED 16 21 7
ACSM2B WILD-TYPE 76 91 67
'ACSM2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S473.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ACSM2B MUTATED 9 7 7 5
ACSM2B WILD-TYPE 37 51 19 33
'ACSM2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S474.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ACSM2B MUTATED 7 6 6 9
ACSM2B WILD-TYPE 20 52 28 40
'ACSM2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S475.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
ACSM2B MUTATED 21 13 10
ACSM2B WILD-TYPE 77 69 88
'ACSM2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S476.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
ACSM2B MUTATED 16 21 7
ACSM2B WILD-TYPE 59 108 67
'ACSM2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S477.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
ACSM2B MUTATED 4 8 13 17 1
ACSM2B WILD-TYPE 35 70 48 68 5
'ACSM2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S478.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
ACSM2B MUTATED 16 16 7 4
ACSM2B WILD-TYPE 60 92 44 30
'ACSM2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S479.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
ACSM2B MUTATED 12 10 20
ACSM2B WILD-TYPE 61 75 80
'ACSM2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S480.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
ACSM2B MUTATED 25 14 3
ACSM2B WILD-TYPE 103 90 23
'PARM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S481.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
PARM1 MUTATED 6 8 5
PARM1 WILD-TYPE 67 97 95
'PARM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S482.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
PARM1 MUTATED 7 8 4
PARM1 WILD-TYPE 85 104 70
'PARM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S483.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PARM1 MUTATED 5 3 4 2
PARM1 WILD-TYPE 41 55 22 36
'PARM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S484.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PARM1 MUTATED 4 6 1 3
PARM1 WILD-TYPE 23 52 33 46
'PARM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S485.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
PARM1 MUTATED 6 6 7
PARM1 WILD-TYPE 92 76 91
'PARM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S486.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
PARM1 MUTATED 6 6 7
PARM1 WILD-TYPE 69 123 67
'PARM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S487.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
PARM1 MUTATED 3 8 2 5 0
PARM1 WILD-TYPE 36 70 59 80 6
'PARM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S488.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
PARM1 MUTATED 2 8 5 3
PARM1 WILD-TYPE 74 100 46 31
'PARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S489.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
PARM1 MUTATED 4 7 7
PARM1 WILD-TYPE 69 78 93
'PARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S490.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
PARM1 MUTATED 6 9 3
PARM1 WILD-TYPE 122 95 23
'TP63 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S491.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
TP63 MUTATED 13 18 17
TP63 WILD-TYPE 60 87 83
'TP63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S492.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
TP63 MUTATED 22 16 10
TP63 WILD-TYPE 70 96 64
'TP63 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0434 (Fisher's exact test), Q value = 1

Table S493.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TP63 MUTATED 11 6 1 9
TP63 WILD-TYPE 35 52 25 29

Figure S44.  Get High-res Image Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TP63 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S494.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
TP63 MUTATED 6 10 7 4
TP63 WILD-TYPE 21 48 27 45
'TP63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S495.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
TP63 MUTATED 22 13 13
TP63 WILD-TYPE 76 69 85
'TP63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S496.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
TP63 MUTATED 13 22 13
TP63 WILD-TYPE 62 107 61
'TP63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S497.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
TP63 MUTATED 8 10 10 16 1
TP63 WILD-TYPE 31 68 51 69 5
'TP63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S498.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
TP63 MUTATED 12 19 10 4
TP63 WILD-TYPE 64 89 41 30
'TP63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S499.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
TP63 MUTATED 11 11 21
TP63 WILD-TYPE 62 74 79
'TP63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S500.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
TP63 MUTATED 26 13 4
TP63 WILD-TYPE 102 91 22
'NGF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S501.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
NGF MUTATED 5 3 1
NGF WILD-TYPE 68 102 99
'NGF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S502.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
NGF MUTATED 4 3 2
NGF WILD-TYPE 88 109 72
'NGF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 1

Table S503.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NGF MUTATED 4 1 0 0
NGF WILD-TYPE 42 57 26 38
'NGF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S504.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NGF MUTATED 1 2 1 1
NGF WILD-TYPE 26 56 33 48
'NGF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S505.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
NGF MUTATED 2 3 4
NGF WILD-TYPE 96 79 94
'NGF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S506.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
NGF MUTATED 2 4 3
NGF WILD-TYPE 73 125 71
'NGF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S507.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
NGF MUTATED 1 3 1 3 0
NGF WILD-TYPE 38 75 60 82 6
'NGF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S508.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
NGF MUTATED 3 3 1 1
NGF WILD-TYPE 73 105 50 33
'NGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0981 (Fisher's exact test), Q value = 1

Table S509.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
NGF MUTATED 0 5 3
NGF WILD-TYPE 73 80 97
'NGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S510.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
NGF MUTATED 5 2 1
NGF WILD-TYPE 123 102 25
'ANO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S511.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
ANO4 MUTATED 13 18 14
ANO4 WILD-TYPE 60 87 86
'ANO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S512.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
ANO4 MUTATED 18 18 9
ANO4 WILD-TYPE 74 94 65
'ANO4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S513.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ANO4 MUTATED 10 8 2 9
ANO4 WILD-TYPE 36 50 24 29
'ANO4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S514.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ANO4 MUTATED 4 9 8 8
ANO4 WILD-TYPE 23 49 26 41
'ANO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S515.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
ANO4 MUTATED 15 17 13
ANO4 WILD-TYPE 83 65 85
'ANO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S516.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
ANO4 MUTATED 12 21 12
ANO4 WILD-TYPE 63 108 62
'ANO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S517.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
ANO4 MUTATED 5 12 12 14 1
ANO4 WILD-TYPE 34 66 49 71 5
'ANO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S518.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
ANO4 MUTATED 14 15 10 5
ANO4 WILD-TYPE 62 93 41 29
'ANO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S519.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
ANO4 MUTATED 13 11 19
ANO4 WILD-TYPE 60 74 81
'ANO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S520.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
ANO4 MUTATED 22 18 3
ANO4 WILD-TYPE 106 86 23
'PCDH18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 1

Table S521.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
PCDH18 MUTATED 18 22 10
PCDH18 WILD-TYPE 55 83 90

Figure S45.  Get High-res Image Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PCDH18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S522.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
PCDH18 MUTATED 15 21 14
PCDH18 WILD-TYPE 77 91 60
'PCDH18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 1

Table S523.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PCDH18 MUTATED 12 8 1 12
PCDH18 WILD-TYPE 34 50 25 26

Figure S46.  Get High-res Image Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PCDH18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S524.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PCDH18 MUTATED 4 14 7 8
PCDH18 WILD-TYPE 23 44 27 41
'PCDH18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S525.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
PCDH18 MUTATED 15 20 15
PCDH18 WILD-TYPE 83 62 83
'PCDH18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S526.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
PCDH18 MUTATED 11 26 13
PCDH18 WILD-TYPE 64 103 61
'PCDH18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S527.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
PCDH18 MUTATED 5 16 11 17 0
PCDH18 WILD-TYPE 34 62 50 68 6
'PCDH18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S528.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
PCDH18 MUTATED 13 19 12 5
PCDH18 WILD-TYPE 63 89 39 29
'PCDH18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S529.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
PCDH18 MUTATED 8 19 20
PCDH18 WILD-TYPE 65 66 80
'PCDH18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S530.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
PCDH18 MUTATED 23 19 5
PCDH18 WILD-TYPE 105 85 21
'NMS MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S531.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
NMS MUTATED 3 5 5
NMS WILD-TYPE 70 100 95
'NMS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S532.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
NMS MUTATED 4 8 1
NMS WILD-TYPE 88 104 73
'NMS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S533.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NMS MUTATED 4 1 2 3
NMS WILD-TYPE 42 57 24 35
'NMS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S534.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NMS MUTATED 2 4 2 2
NMS WILD-TYPE 25 54 32 47
'NMS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 1

Table S535.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
NMS MUTATED 2 9 2
NMS WILD-TYPE 96 73 96

Figure S47.  Get High-res Image Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NMS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S536.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
NMS MUTATED 3 9 1
NMS WILD-TYPE 72 120 73
'NMS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S537.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
NMS MUTATED 1 4 4 4 0
NMS WILD-TYPE 38 74 57 81 6
'NMS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S538.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
NMS MUTATED 4 6 2 1
NMS WILD-TYPE 72 102 49 33
'NMS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S539.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
NMS MUTATED 6 3 4
NMS WILD-TYPE 67 82 96
'NMS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S540.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
NMS MUTATED 8 4 1
NMS WILD-TYPE 120 100 25
'C12ORF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S541.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
C12ORF43 MUTATED 1 3 1
C12ORF43 WILD-TYPE 72 102 99
'C12ORF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S542.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
C12ORF43 MUTATED 2 3 0
C12ORF43 WILD-TYPE 90 109 74
'C12ORF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S543.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C12ORF43 MUTATED 2 0 0 2
C12ORF43 WILD-TYPE 44 58 26 36
'C12ORF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S544.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
C12ORF43 MUTATED 1 1 2 0
C12ORF43 WILD-TYPE 26 57 32 49
'C12ORF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S545.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
C12ORF43 MUTATED 1 2 2
C12ORF43 WILD-TYPE 97 80 96
'C12ORF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S546.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
C12ORF43 MUTATED 0 3 2
C12ORF43 WILD-TYPE 75 126 72
'C12ORF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S547.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
C12ORF43 MUTATED 1 2 1 1 0
C12ORF43 WILD-TYPE 38 76 60 84 6
'C12ORF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S548.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
C12ORF43 MUTATED 1 1 2 1
C12ORF43 WILD-TYPE 75 107 49 33
'C12ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S549.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
C12ORF43 MUTATED 1 3 1
C12ORF43 WILD-TYPE 72 82 99
'C12ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S550.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
C12ORF43 MUTATED 2 2 1
C12ORF43 WILD-TYPE 126 102 25
'XIRP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S551.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
XIRP2 MUTATED 29 39 26
XIRP2 WILD-TYPE 44 66 74
'XIRP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S552.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
XIRP2 MUTATED 36 37 21
XIRP2 WILD-TYPE 56 75 53
'XIRP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S553.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
XIRP2 MUTATED 18 15 11 17
XIRP2 WILD-TYPE 28 43 15 21
'XIRP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S554.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
XIRP2 MUTATED 9 19 12 21
XIRP2 WILD-TYPE 18 39 22 28
'XIRP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S555.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
XIRP2 MUTATED 38 27 29
XIRP2 WILD-TYPE 60 55 69
'XIRP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S556.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
XIRP2 MUTATED 28 43 23
XIRP2 WILD-TYPE 47 86 51
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S557.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
XIRP2 MUTATED 16 25 22 26 1
XIRP2 WILD-TYPE 23 53 39 59 5
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S558.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
XIRP2 MUTATED 25 32 19 14
XIRP2 WILD-TYPE 51 76 32 20
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S559.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
XIRP2 MUTATED 27 27 34
XIRP2 WILD-TYPE 46 58 66
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S560.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
XIRP2 MUTATED 45 32 11
XIRP2 WILD-TYPE 83 72 15
'USH2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S561.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
USH2A MUTATED 27 37 27
USH2A WILD-TYPE 46 68 73
'USH2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S562.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
USH2A MUTATED 35 36 20
USH2A WILD-TYPE 57 76 54
'USH2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0678 (Fisher's exact test), Q value = 1

Table S563.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
USH2A MUTATED 18 14 12 18
USH2A WILD-TYPE 28 44 14 20
'USH2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S564.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
USH2A MUTATED 11 20 11 20
USH2A WILD-TYPE 16 38 23 29
'USH2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S565.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
USH2A MUTATED 34 30 27
USH2A WILD-TYPE 64 52 71
'USH2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S566.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
USH2A MUTATED 25 45 21
USH2A WILD-TYPE 50 84 53
'USH2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S567.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
USH2A MUTATED 16 20 21 28 3
USH2A WILD-TYPE 23 58 40 57 3
'USH2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S568.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
USH2A MUTATED 28 29 17 14
USH2A WILD-TYPE 48 79 34 20
'USH2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S569.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
USH2A MUTATED 28 22 35
USH2A WILD-TYPE 45 63 65
'USH2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S570.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
USH2A MUTATED 46 29 10
USH2A WILD-TYPE 82 75 16
'DDX3X MUTATION STATUS' versus 'CN_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S571.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
DDX3X MUTATED 2 9 8
DDX3X WILD-TYPE 71 96 92
'DDX3X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S572.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
DDX3X MUTATED 6 8 5
DDX3X WILD-TYPE 86 104 69
'DDX3X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S573.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DDX3X MUTATED 5 4 1 5
DDX3X WILD-TYPE 41 54 25 33
'DDX3X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S574.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DDX3X MUTATED 5 4 1 5
DDX3X WILD-TYPE 22 54 33 44
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S575.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
DDX3X MUTATED 6 8 5
DDX3X WILD-TYPE 92 74 93
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S576.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
DDX3X MUTATED 7 10 2
DDX3X WILD-TYPE 68 119 72
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S577.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
DDX3X MUTATED 4 6 3 6 0
DDX3X WILD-TYPE 35 72 58 79 6
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S578.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
DDX3X MUTATED 6 8 1 4
DDX3X WILD-TYPE 70 100 50 30
'DDX3X MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S579.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
DDX3X MUTATED 4 6 8
DDX3X WILD-TYPE 69 79 92
'DDX3X MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S580.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
DDX3X MUTATED 10 6 2
DDX3X WILD-TYPE 118 98 24
'PTPN22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S581.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
PTPN22 MUTATED 3 11 10
PTPN22 WILD-TYPE 70 94 90
'PTPN22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0809 (Fisher's exact test), Q value = 1

Table S582.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
PTPN22 MUTATED 10 12 2
PTPN22 WILD-TYPE 82 100 72
'PTPN22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S583.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PTPN22 MUTATED 3 5 0 4
PTPN22 WILD-TYPE 43 53 26 34
'PTPN22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 1

Table S584.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PTPN22 MUTATED 1 9 0 2
PTPN22 WILD-TYPE 26 49 34 47

Figure S48.  Get High-res Image Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PTPN22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S585.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
PTPN22 MUTATED 9 9 6
PTPN22 WILD-TYPE 89 73 92
'PTPN22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S586.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
PTPN22 MUTATED 7 12 5
PTPN22 WILD-TYPE 68 117 69
'PTPN22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S587.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
PTPN22 MUTATED 5 3 7 7 0
PTPN22 WILD-TYPE 34 75 54 78 6
'PTPN22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S588.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
PTPN22 MUTATED 6 7 5 4
PTPN22 WILD-TYPE 70 101 46 30
'PTPN22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S589.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
PTPN22 MUTATED 8 3 9
PTPN22 WILD-TYPE 65 82 91
'PTPN22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S590.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
PTPN22 MUTATED 11 6 3
PTPN22 WILD-TYPE 117 98 23
'C3ORF71 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S591.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
C3ORF71 MUTATED 0 2 2
C3ORF71 WILD-TYPE 73 103 98
'C3ORF71 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S592.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
C3ORF71 MUTATED 0 2 2
C3ORF71 WILD-TYPE 92 110 72
'C3ORF71 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S593.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C3ORF71 MUTATED 1 3 0 0
C3ORF71 WILD-TYPE 45 55 26 38
'C3ORF71 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S594.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
C3ORF71 MUTATED 1 2 1 0
C3ORF71 WILD-TYPE 26 56 33 49
'C3ORF71 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S595.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
C3ORF71 MUTATED 0 1 3
C3ORF71 WILD-TYPE 98 81 95
'C3ORF71 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S596.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
C3ORF71 MUTATED 0 1 3
C3ORF71 WILD-TYPE 75 128 71
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S597.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
C3ORF71 MUTATED 0 2 1 1 0
C3ORF71 WILD-TYPE 39 76 60 84 6
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 1

Table S598.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
C3ORF71 MUTATED 1 0 3 0
C3ORF71 WILD-TYPE 75 108 48 34

Figure S49.  Get High-res Image Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S599.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
C3ORF71 MUTATED 1 2 1
C3ORF71 WILD-TYPE 72 83 99
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S600.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
C3ORF71 MUTATED 1 3 0
C3ORF71 WILD-TYPE 127 101 26
'CEACAM6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S601.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
CEACAM6 MUTATED 4 7 4
CEACAM6 WILD-TYPE 69 98 96
'CEACAM6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S602.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
CEACAM6 MUTATED 7 5 3
CEACAM6 WILD-TYPE 85 107 71
'CEACAM6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S603.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CEACAM6 MUTATED 3 5 1 2
CEACAM6 WILD-TYPE 43 53 25 36
'CEACAM6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S604.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CEACAM6 MUTATED 1 3 2 5
CEACAM6 WILD-TYPE 26 55 32 44
'CEACAM6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S605.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
CEACAM6 MUTATED 4 5 6
CEACAM6 WILD-TYPE 94 77 92
'CEACAM6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S606.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
CEACAM6 MUTATED 3 6 6
CEACAM6 WILD-TYPE 72 123 68
'CEACAM6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S607.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
CEACAM6 MUTATED 1 3 2 9 0
CEACAM6 WILD-TYPE 38 75 59 76 6
'CEACAM6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S608.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
CEACAM6 MUTATED 3 8 3 1
CEACAM6 WILD-TYPE 73 100 48 33
'CEACAM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S609.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
CEACAM6 MUTATED 4 4 6
CEACAM6 WILD-TYPE 69 81 94
'CEACAM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S610.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
CEACAM6 MUTATED 9 4 1
CEACAM6 WILD-TYPE 119 100 25
'MUC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S611.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
MUC7 MUTATED 6 6 5
MUC7 WILD-TYPE 67 99 95
'MUC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S612.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
MUC7 MUTATED 8 5 4
MUC7 WILD-TYPE 84 107 70
'MUC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S613.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MUC7 MUTATED 1 5 1 2
MUC7 WILD-TYPE 45 53 25 36
'MUC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S614.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MUC7 MUTATED 1 2 2 4
MUC7 WILD-TYPE 26 56 32 45
'MUC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S615.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
MUC7 MUTATED 5 7 5
MUC7 WILD-TYPE 93 75 93
'MUC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S616.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
MUC7 MUTATED 7 7 3
MUC7 WILD-TYPE 68 122 71
'MUC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S617.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
MUC7 MUTATED 0 2 7 5 0
MUC7 WILD-TYPE 39 76 54 80 6
'MUC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S618.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
MUC7 MUTATED 6 5 3 0
MUC7 WILD-TYPE 70 103 48 34
'MUC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00557 (Fisher's exact test), Q value = 1

Table S619.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
MUC7 MUTATED 5 0 9
MUC7 WILD-TYPE 68 85 91

Figure S50.  Get High-res Image Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MUC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S620.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
MUC7 MUTATED 9 5 0
MUC7 WILD-TYPE 119 99 26
'SELP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S621.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
SELP MUTATED 10 12 12
SELP WILD-TYPE 63 93 88
'SELP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0748 (Fisher's exact test), Q value = 1

Table S622.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
SELP MUTATED 17 9 8
SELP WILD-TYPE 75 103 66
'SELP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 1

Table S623.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SELP MUTATED 9 4 0 5
SELP WILD-TYPE 37 54 26 33

Figure S51.  Get High-res Image Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SELP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0718 (Fisher's exact test), Q value = 1

Table S624.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SELP MUTATED 3 9 5 1
SELP WILD-TYPE 24 49 29 48
'SELP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S625.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
SELP MUTATED 14 7 13
SELP WILD-TYPE 84 75 85
'SELP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S626.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
SELP MUTATED 12 12 10
SELP WILD-TYPE 63 117 64
'SELP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S627.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
SELP MUTATED 5 9 7 10 1
SELP WILD-TYPE 34 69 54 75 5
'SELP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S628.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
SELP MUTATED 6 16 6 4
SELP WILD-TYPE 70 92 45 30
'SELP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S629.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
SELP MUTATED 8 8 14
SELP WILD-TYPE 65 77 86
'SELP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S630.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
SELP MUTATED 14 13 3
SELP WILD-TYPE 114 91 23
'LIPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S631.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
LIPH MUTATED 4 3 8
LIPH WILD-TYPE 69 102 92
'LIPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S632.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
LIPH MUTATED 7 6 2
LIPH WILD-TYPE 85 106 72
'LIPH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S633.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
LIPH MUTATED 4 2 0 4
LIPH WILD-TYPE 42 56 26 34
'LIPH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S634.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
LIPH MUTATED 3 2 3 2
LIPH WILD-TYPE 24 56 31 47
'LIPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S635.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
LIPH MUTATED 7 4 4
LIPH WILD-TYPE 91 78 94
'LIPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S636.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
LIPH MUTATED 6 6 3
LIPH WILD-TYPE 69 123 71
'LIPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S637.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
LIPH MUTATED 1 5 4 4 0
LIPH WILD-TYPE 38 73 57 81 6
'LIPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S638.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
LIPH MUTATED 3 7 3 1
LIPH WILD-TYPE 73 101 48 33
'LIPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S639.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
LIPH MUTATED 3 5 6
LIPH WILD-TYPE 70 80 94
'LIPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S640.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
LIPH MUTATED 7 6 1
LIPH WILD-TYPE 121 98 25
'MMP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S641.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
MMP1 MUTATED 1 7 6
MMP1 WILD-TYPE 72 98 94
'MMP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S642.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
MMP1 MUTATED 8 3 3
MMP1 WILD-TYPE 84 109 71
'MMP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S643.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MMP1 MUTATED 1 2 0 2
MMP1 WILD-TYPE 45 56 26 36
'MMP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S644.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MMP1 MUTATED 1 1 1 2
MMP1 WILD-TYPE 26 57 33 47
'MMP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S645.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
MMP1 MUTATED 6 3 5
MMP1 WILD-TYPE 92 79 93
'MMP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S646.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
MMP1 MUTATED 5 5 4
MMP1 WILD-TYPE 70 124 70
'MMP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S647.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
MMP1 MUTATED 0 5 5 4 0
MMP1 WILD-TYPE 39 73 56 81 6
'MMP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0476 (Fisher's exact test), Q value = 1

Table S648.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
MMP1 MUTATED 1 10 3 0
MMP1 WILD-TYPE 75 98 48 34

Figure S52.  Get High-res Image Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MMP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S649.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
MMP1 MUTATED 4 4 5
MMP1 WILD-TYPE 69 81 95
'MMP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S650.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
MMP1 MUTATED 6 7 0
MMP1 WILD-TYPE 122 97 26
'KLF11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S651.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
KLF11 MUTATED 2 6 1
KLF11 WILD-TYPE 71 99 99
'KLF11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 1

Table S652.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
KLF11 MUTATED 6 3 0
KLF11 WILD-TYPE 86 109 74
'KLF11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S653.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
KLF11 MUTATED 2 3 0 1
KLF11 WILD-TYPE 44 55 26 37
'KLF11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 1

Table S654.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
KLF11 MUTATED 2 0 0 4
KLF11 WILD-TYPE 25 58 34 45

Figure S53.  Get High-res Image Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KLF11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S655.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
KLF11 MUTATED 5 2 2
KLF11 WILD-TYPE 93 80 96
'KLF11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S656.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
KLF11 MUTATED 3 4 2
KLF11 WILD-TYPE 72 125 72
'KLF11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S657.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
KLF11 MUTATED 1 2 3 3 0
KLF11 WILD-TYPE 38 76 58 82 6
'KLF11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S658.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
KLF11 MUTATED 3 4 1 1
KLF11 WILD-TYPE 73 104 50 33
'KLF11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S659.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
KLF11 MUTATED 4 2 3
KLF11 WILD-TYPE 69 83 97
'KLF11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S660.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
KLF11 MUTATED 6 2 1
KLF11 WILD-TYPE 122 102 25
'USP9X MUTATION STATUS' versus 'CN_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S661.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
USP9X MUTATED 6 6 4
USP9X WILD-TYPE 67 99 96
'USP9X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S662.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
USP9X MUTATED 7 4 5
USP9X WILD-TYPE 85 108 69
'USP9X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S663.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
USP9X MUTATED 1 4 0 4
USP9X WILD-TYPE 45 54 26 34
'USP9X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S664.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
USP9X MUTATED 0 5 0 4
USP9X WILD-TYPE 27 53 34 45
'USP9X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S665.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
USP9X MUTATED 6 5 5
USP9X WILD-TYPE 92 77 93
'USP9X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S666.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
USP9X MUTATED 6 7 3
USP9X WILD-TYPE 69 122 71
'USP9X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S667.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
USP9X MUTATED 0 4 5 6 1
USP9X WILD-TYPE 39 74 56 79 5
'USP9X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S668.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
USP9X MUTATED 6 6 4 0
USP9X WILD-TYPE 70 102 47 34
'USP9X MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S669.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
USP9X MUTATED 7 2 7
USP9X WILD-TYPE 66 83 93
'USP9X MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S670.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
USP9X MUTATED 9 7 0
USP9X WILD-TYPE 119 97 26
'PTK7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S671.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
PTK7 MUTATED 6 4 7
PTK7 WILD-TYPE 67 101 93
'PTK7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S672.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
PTK7 MUTATED 8 6 3
PTK7 WILD-TYPE 84 106 71
'PTK7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S673.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PTK7 MUTATED 4 1 2 2
PTK7 WILD-TYPE 42 57 24 36
'PTK7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S674.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PTK7 MUTATED 2 2 3 2
PTK7 WILD-TYPE 25 56 31 47
'PTK7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S675.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
PTK7 MUTATED 8 4 5
PTK7 WILD-TYPE 90 78 93
'PTK7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S676.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
PTK7 MUTATED 6 8 3
PTK7 WILD-TYPE 69 121 71
'PTK7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S677.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
PTK7 MUTATED 0 4 3 8 1
PTK7 WILD-TYPE 39 74 58 77 5
'PTK7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S678.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
PTK7 MUTATED 4 9 3 0
PTK7 WILD-TYPE 72 99 48 34
'PTK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S679.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
PTK7 MUTATED 3 3 10
PTK7 WILD-TYPE 70 82 90
'PTK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S680.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
PTK7 MUTATED 9 7 0
PTK7 WILD-TYPE 119 97 26
'SLC14A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S681.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
SLC14A1 MUTATED 6 7 5
SLC14A1 WILD-TYPE 67 98 95
'SLC14A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S682.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
SLC14A1 MUTATED 8 5 5
SLC14A1 WILD-TYPE 84 107 69
'SLC14A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S683.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SLC14A1 MUTATED 4 3 1 3
SLC14A1 WILD-TYPE 42 55 25 35
'SLC14A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S684.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SLC14A1 MUTATED 4 2 2 3
SLC14A1 WILD-TYPE 23 56 32 46
'SLC14A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S685.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
SLC14A1 MUTATED 7 5 6
SLC14A1 WILD-TYPE 91 77 92
'SLC14A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S686.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
SLC14A1 MUTATED 6 6 6
SLC14A1 WILD-TYPE 69 123 68
'SLC14A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.99 (Fisher's exact test), Q value = 1

Table S687.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
SLC14A1 MUTATED 3 5 4 5 0
SLC14A1 WILD-TYPE 36 73 57 80 6
'SLC14A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S688.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
SLC14A1 MUTATED 3 7 5 2
SLC14A1 WILD-TYPE 73 101 46 32
'SLC14A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S689.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
SLC14A1 MUTATED 2 5 10
SLC14A1 WILD-TYPE 71 80 90
'SLC14A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S690.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
SLC14A1 MUTATED 8 8 1
SLC14A1 WILD-TYPE 120 96 25
'PROX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S691.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
PROX2 MUTATED 6 4 3
PROX2 WILD-TYPE 67 101 97
'PROX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S692.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
PROX2 MUTATED 6 5 2
PROX2 WILD-TYPE 86 107 72
'PROX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S693.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PROX2 MUTATED 2 3 1 3
PROX2 WILD-TYPE 44 55 25 35
'PROX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S694.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PROX2 MUTATED 2 3 1 3
PROX2 WILD-TYPE 25 55 33 46
'PROX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S695.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
PROX2 MUTATED 6 2 5
PROX2 WILD-TYPE 92 80 93
'PROX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0846 (Fisher's exact test), Q value = 1

Table S696.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
PROX2 MUTATED 7 3 3
PROX2 WILD-TYPE 68 126 71
'PROX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S697.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
PROX2 MUTATED 3 3 3 4 0
PROX2 WILD-TYPE 36 75 58 81 6
'PROX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S698.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
PROX2 MUTATED 5 4 1 3
PROX2 WILD-TYPE 71 104 50 31
'PROX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S699.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
PROX2 MUTATED 5 2 5
PROX2 WILD-TYPE 68 83 95
'PROX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S700.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
PROX2 MUTATED 6 3 3
PROX2 WILD-TYPE 122 101 23
'DNMBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S701.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
DNMBP MUTATED 8 8 3
DNMBP WILD-TYPE 65 97 97
'DNMBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S702.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
DNMBP MUTATED 5 7 7
DNMBP WILD-TYPE 87 105 67
'DNMBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S703.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DNMBP MUTATED 3 6 2 3
DNMBP WILD-TYPE 43 52 24 35
'DNMBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S704.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DNMBP MUTATED 2 5 2 5
DNMBP WILD-TYPE 25 53 32 44
'DNMBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S705.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
DNMBP MUTATED 7 7 5
DNMBP WILD-TYPE 91 75 93
'DNMBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S706.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
DNMBP MUTATED 7 9 3
DNMBP WILD-TYPE 68 120 71
'DNMBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S707.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
DNMBP MUTATED 3 2 8 6 0
DNMBP WILD-TYPE 36 76 53 79 6
'DNMBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S708.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
DNMBP MUTATED 7 6 3 3
DNMBP WILD-TYPE 69 102 48 31
'DNMBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0934 (Fisher's exact test), Q value = 1

Table S709.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
DNMBP MUTATED 7 2 9
DNMBP WILD-TYPE 66 83 91
'DNMBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S710.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
DNMBP MUTATED 11 5 2
DNMBP WILD-TYPE 117 99 24
'MPP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S711.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
MPP7 MUTATED 10 13 7
MPP7 WILD-TYPE 63 92 93
'MPP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S712.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
MPP7 MUTATED 15 10 5
MPP7 WILD-TYPE 77 102 69
'MPP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S713.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MPP7 MUTATED 5 10 1 4
MPP7 WILD-TYPE 41 48 25 34
'MPP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S714.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MPP7 MUTATED 4 9 1 6
MPP7 WILD-TYPE 23 49 33 43
'MPP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S715.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
MPP7 MUTATED 14 9 7
MPP7 WILD-TYPE 84 73 91
'MPP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S716.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
MPP7 MUTATED 12 12 6
MPP7 WILD-TYPE 63 117 68
'MPP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S717.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
MPP7 MUTATED 4 9 7 9 0
MPP7 WILD-TYPE 35 69 54 76 6
'MPP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S718.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
MPP7 MUTATED 7 13 6 3
MPP7 WILD-TYPE 69 95 45 31
'MPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S719.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
MPP7 MUTATED 7 9 11
MPP7 WILD-TYPE 66 76 89
'MPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S720.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
MPP7 MUTATED 14 10 3
MPP7 WILD-TYPE 114 94 23
'IFNGR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S721.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
IFNGR2 MUTATED 1 2 1
IFNGR2 WILD-TYPE 72 103 99
'IFNGR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S722.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
IFNGR2 MUTATED 1 3 0
IFNGR2 WILD-TYPE 91 109 74
'IFNGR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S723.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
IFNGR2 MUTATED 2 1 0 0
IFNGR2 WILD-TYPE 44 57 26 38
'IFNGR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0679 (Fisher's exact test), Q value = 1

Table S724.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
IFNGR2 MUTATED 2 0 0 1
IFNGR2 WILD-TYPE 25 58 34 48
'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S725.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
IFNGR2 MUTATED 2 2 0
IFNGR2 WILD-TYPE 96 80 98
'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S726.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
IFNGR2 MUTATED 2 1 1
IFNGR2 WILD-TYPE 73 128 73
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S727.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
IFNGR2 MUTATED 0 2 1 1 0
IFNGR2 WILD-TYPE 39 76 60 84 6
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S728.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
IFNGR2 MUTATED 3 0 1 0
IFNGR2 WILD-TYPE 73 108 50 34
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S729.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
IFNGR2 MUTATED 1 2 1
IFNGR2 WILD-TYPE 72 83 99
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S730.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
IFNGR2 MUTATED 2 2 0
IFNGR2 WILD-TYPE 126 102 26
'ASNSD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 1

Table S731.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
ASNSD1 MUTATED 1 6 0
ASNSD1 WILD-TYPE 72 99 100

Figure S54.  Get High-res Image Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ASNSD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S732.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
ASNSD1 MUTATED 1 5 1
ASNSD1 WILD-TYPE 91 107 73
'ASNSD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S733.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ASNSD1 MUTATED 3 1 0 1
ASNSD1 WILD-TYPE 43 57 26 37
'ASNSD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0308 (Fisher's exact test), Q value = 1

Table S734.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ASNSD1 MUTATED 3 0 1 1
ASNSD1 WILD-TYPE 24 58 33 48

Figure S55.  Get High-res Image Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ASNSD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S735.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
ASNSD1 MUTATED 4 2 1
ASNSD1 WILD-TYPE 94 80 97
'ASNSD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S736.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
ASNSD1 MUTATED 2 4 1
ASNSD1 WILD-TYPE 73 125 73
'ASNSD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S737.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
ASNSD1 MUTATED 1 3 2 1 0
ASNSD1 WILD-TYPE 38 75 59 84 6
'ASNSD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S738.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
ASNSD1 MUTATED 2 3 1 1
ASNSD1 WILD-TYPE 74 105 50 33
'ASNSD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S739.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
ASNSD1 MUTATED 4 2 1
ASNSD1 WILD-TYPE 69 83 99
'ASNSD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S740.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
ASNSD1 MUTATED 3 3 1
ASNSD1 WILD-TYPE 125 101 25
'RB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S741.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
RB1 MUTATED 5 3 1
RB1 WILD-TYPE 68 102 99
'RB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S742.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
RB1 MUTATED 1 3 5
RB1 WILD-TYPE 91 109 69
'RB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S743.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RB1 MUTATED 2 2 1 1
RB1 WILD-TYPE 44 56 25 37
'RB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S744.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
RB1 MUTATED 1 3 1 1
RB1 WILD-TYPE 26 55 33 48
'RB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S745.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
RB1 MUTATED 5 2 2
RB1 WILD-TYPE 93 80 96
'RB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S746.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
RB1 MUTATED 4 3 2
RB1 WILD-TYPE 71 126 72
'RB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S747.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
RB1 MUTATED 0 2 5 2 0
RB1 WILD-TYPE 39 76 56 83 6
'RB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00191 (Fisher's exact test), Q value = 1

Table S748.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
RB1 MUTATED 7 0 2 0
RB1 WILD-TYPE 69 108 49 34

Figure S56.  Get High-res Image Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S749.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
RB1 MUTATED 3 2 4
RB1 WILD-TYPE 70 83 96
'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0721 (Fisher's exact test), Q value = 1

Table S750.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
RB1 MUTATED 8 1 0
RB1 WILD-TYPE 120 103 26
'CCK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S751.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
CCK MUTATED 3 1 2
CCK WILD-TYPE 70 104 98
'CCK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S752.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
CCK MUTATED 1 4 1
CCK WILD-TYPE 91 108 73
'CCK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S753.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CCK MUTATED 3 1 0 0
CCK WILD-TYPE 43 57 26 38
'CCK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0204 (Fisher's exact test), Q value = 1

Table S754.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CCK MUTATED 3 1 0 0
CCK WILD-TYPE 24 57 34 49

Figure S57.  Get High-res Image Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S755.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
CCK MUTATED 1 3 2
CCK WILD-TYPE 97 79 96
'CCK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S756.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
CCK MUTATED 1 3 2
CCK WILD-TYPE 74 126 72
'CCK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S757.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
CCK MUTATED 1 3 1 1 0
CCK WILD-TYPE 38 75 60 84 6
'CCK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S758.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
CCK MUTATED 2 2 1 1
CCK WILD-TYPE 74 106 50 33
'CCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S759.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
CCK MUTATED 2 2 2
CCK WILD-TYPE 71 83 98
'CCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S760.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
CCK MUTATED 3 2 1
CCK WILD-TYPE 125 102 25
'ZNF780B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 1

Table S761.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
ZNF780B MUTATED 2 7 1
ZNF780B WILD-TYPE 71 98 99
'ZNF780B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S762.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
ZNF780B MUTATED 4 5 1
ZNF780B WILD-TYPE 88 107 73
'ZNF780B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S763.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ZNF780B MUTATED 1 5 0 1
ZNF780B WILD-TYPE 45 53 26 37
'ZNF780B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S764.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ZNF780B MUTATED 1 4 0 2
ZNF780B WILD-TYPE 26 54 34 47
'ZNF780B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S765.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
ZNF780B MUTATED 4 4 2
ZNF780B WILD-TYPE 94 78 96
'ZNF780B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S766.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
ZNF780B MUTATED 3 6 1
ZNF780B WILD-TYPE 72 123 73
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S767.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
ZNF780B MUTATED 2 3 3 1 0
ZNF780B WILD-TYPE 37 75 58 84 6
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S768.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
ZNF780B MUTATED 2 5 1 1
ZNF780B WILD-TYPE 74 103 50 33
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S769.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
ZNF780B MUTATED 3 2 4
ZNF780B WILD-TYPE 70 83 96
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S770.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
ZNF780B MUTATED 4 4 1
ZNF780B WILD-TYPE 124 100 25
'ATP5F1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S771.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
ATP5F1 MUTATED 2 3 2
ATP5F1 WILD-TYPE 71 102 98
'ATP5F1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S772.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
ATP5F1 MUTATED 3 3 1
ATP5F1 WILD-TYPE 89 109 73
'ATP5F1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 1

Table S773.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ATP5F1 MUTATED 1 0 1 4
ATP5F1 WILD-TYPE 45 58 25 34

Figure S58.  Get High-res Image Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ATP5F1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S774.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ATP5F1 MUTATED 2 2 0 2
ATP5F1 WILD-TYPE 25 56 34 47
'ATP5F1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S775.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
ATP5F1 MUTATED 2 3 2
ATP5F1 WILD-TYPE 96 79 96
'ATP5F1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S776.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
ATP5F1 MUTATED 2 4 1
ATP5F1 WILD-TYPE 73 125 73
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S777.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
ATP5F1 MUTATED 0 3 2 2 0
ATP5F1 WILD-TYPE 39 75 59 83 6
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S778.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
ATP5F1 MUTATED 1 5 1 0
ATP5F1 WILD-TYPE 75 103 50 34
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S779.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
ATP5F1 MUTATED 3 2 2
ATP5F1 WILD-TYPE 70 83 98
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S780.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
ATP5F1 MUTATED 4 3 0
ATP5F1 WILD-TYPE 124 101 26
'LOC728819 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S781.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
LOC728819 MUTATED 2 3 3
LOC728819 WILD-TYPE 71 102 97
'LOC728819 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S782.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
LOC728819 MUTATED 2 4 2
LOC728819 WILD-TYPE 90 108 72
'LOC728819 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S783.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
LOC728819 MUTATED 1 0 2 2
LOC728819 WILD-TYPE 45 58 24 36
'LOC728819 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S784.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
LOC728819 MUTATED 1 2 0 2
LOC728819 WILD-TYPE 26 56 34 47
'LOC728819 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S785.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
LOC728819 MUTATED 2 3 3
LOC728819 WILD-TYPE 96 79 95
'LOC728819 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S786.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
LOC728819 MUTATED 3 3 2
LOC728819 WILD-TYPE 72 126 72
'LOC728819 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S787.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
LOC728819 MUTATED 0 2 3 3 0
LOC728819 WILD-TYPE 39 76 58 82 6
'LOC728819 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S788.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
LOC728819 MUTATED 4 3 1 0
LOC728819 WILD-TYPE 72 105 50 34
'LOC728819 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S789.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
LOC728819 MUTATED 3 1 4
LOC728819 WILD-TYPE 70 84 96
'LOC728819 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S790.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
LOC728819 MUTATED 4 4 0
LOC728819 WILD-TYPE 124 100 26
'LACRT MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S791.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
LACRT MUTATED 2 4 3
LACRT WILD-TYPE 71 101 97
'LACRT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S792.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
LACRT MUTATED 5 3 1
LACRT WILD-TYPE 87 109 73
'LACRT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.067 (Fisher's exact test), Q value = 1

Table S793.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
LACRT MUTATED 2 0 0 3
LACRT WILD-TYPE 44 58 26 35
'LACRT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0852 (Fisher's exact test), Q value = 1

Table S794.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
LACRT MUTATED 1 1 3 0
LACRT WILD-TYPE 26 57 31 49
'LACRT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S795.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
LACRT MUTATED 4 2 3
LACRT WILD-TYPE 94 80 95
'LACRT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S796.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
LACRT MUTATED 3 3 3
LACRT WILD-TYPE 72 126 71
'LACRT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S797.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
LACRT MUTATED 2 4 0 2 0
LACRT WILD-TYPE 37 74 61 83 6
'LACRT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S798.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
LACRT MUTATED 2 3 2 1
LACRT WILD-TYPE 74 105 49 33
'LACRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S799.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
LACRT MUTATED 2 3 3
LACRT WILD-TYPE 71 82 97
'LACRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S800.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
LACRT MUTATED 3 4 1
LACRT WILD-TYPE 125 100 25
'RPGRIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S801.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
RPGRIP1 MUTATED 8 12 5
RPGRIP1 WILD-TYPE 65 93 95
'RPGRIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S802.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
RPGRIP1 MUTATED 8 8 9
RPGRIP1 WILD-TYPE 84 104 65
'RPGRIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S803.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RPGRIP1 MUTATED 6 4 3 1
RPGRIP1 WILD-TYPE 40 54 23 37
'RPGRIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S804.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
RPGRIP1 MUTATED 4 3 2 5
RPGRIP1 WILD-TYPE 23 55 32 44
'RPGRIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S805.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
RPGRIP1 MUTATED 12 7 6
RPGRIP1 WILD-TYPE 86 75 92
'RPGRIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0606 (Fisher's exact test), Q value = 1

Table S806.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
RPGRIP1 MUTATED 12 9 4
RPGRIP1 WILD-TYPE 63 120 70
'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S807.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
RPGRIP1 MUTATED 2 6 6 11 0
RPGRIP1 WILD-TYPE 37 72 55 74 6
'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S808.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
RPGRIP1 MUTATED 10 11 3 1
RPGRIP1 WILD-TYPE 66 97 48 33
'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0631 (Fisher's exact test), Q value = 1

Table S809.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
RPGRIP1 MUTATED 8 3 13
RPGRIP1 WILD-TYPE 65 82 87
'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0527 (Fisher's exact test), Q value = 1

Table S810.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
RPGRIP1 MUTATED 17 7 0
RPGRIP1 WILD-TYPE 111 97 26
'THEMIS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 1

Table S811.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
THEMIS MUTATED 13 15 6
THEMIS WILD-TYPE 60 90 94

Figure S59.  Get High-res Image Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'THEMIS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 1

Table S812.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
THEMIS MUTATED 18 9 7
THEMIS WILD-TYPE 74 103 67

Figure S60.  Get High-res Image Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'THEMIS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S813.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
THEMIS MUTATED 6 7 1 6
THEMIS WILD-TYPE 40 51 25 32
'THEMIS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S814.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
THEMIS MUTATED 4 7 2 7
THEMIS WILD-TYPE 23 51 32 42
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S815.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
THEMIS MUTATED 11 13 10
THEMIS WILD-TYPE 87 69 88
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S816.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
THEMIS MUTATED 11 17 6
THEMIS WILD-TYPE 64 112 68
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S817.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
THEMIS MUTATED 1 9 7 14 0
THEMIS WILD-TYPE 38 69 54 71 6
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S818.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
THEMIS MUTATED 8 16 6 1
THEMIS WILD-TYPE 68 92 45 33
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S819.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
THEMIS MUTATED 9 7 14
THEMIS WILD-TYPE 64 78 86
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S820.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
THEMIS MUTATED 17 12 1
THEMIS WILD-TYPE 111 92 25
'PTPRT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S821.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
PTPRT MUTATED 22 33 26
PTPRT WILD-TYPE 51 72 74
'PTPRT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0703 (Fisher's exact test), Q value = 1

Table S822.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
PTPRT MUTATED 35 29 17
PTPRT WILD-TYPE 57 83 57
'PTPRT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 1

Table S823.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PTPRT MUTATED 14 21 4 13
PTPRT WILD-TYPE 32 37 22 25
'PTPRT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S824.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PTPRT MUTATED 7 19 10 16
PTPRT WILD-TYPE 20 39 24 33
'PTPRT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S825.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
PTPRT MUTATED 28 27 26
PTPRT WILD-TYPE 70 55 72
'PTPRT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S826.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
PTPRT MUTATED 19 41 21
PTPRT WILD-TYPE 56 88 53
'PTPRT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S827.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
PTPRT MUTATED 9 20 20 28 2
PTPRT WILD-TYPE 30 58 41 57 4
'PTPRT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S828.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
PTPRT MUTATED 22 36 14 7
PTPRT WILD-TYPE 54 72 37 27
'PTPRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S829.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
PTPRT MUTATED 23 19 36
PTPRT WILD-TYPE 50 66 64
'PTPRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S830.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
PTPRT MUTATED 46 27 5
PTPRT WILD-TYPE 82 77 21
'SELPLG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S831.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
SELPLG MUTATED 2 3 5
SELPLG WILD-TYPE 71 102 95
'SELPLG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S832.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
SELPLG MUTATED 4 5 1
SELPLG WILD-TYPE 88 107 73
'SELPLG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.079 (Fisher's exact test), Q value = 1

Table S833.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SELPLG MUTATED 4 0 1 2
SELPLG WILD-TYPE 42 58 25 36
'SELPLG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S834.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SELPLG MUTATED 1 3 1 2
SELPLG WILD-TYPE 26 55 33 47
'SELPLG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S835.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
SELPLG MUTATED 3 5 2
SELPLG WILD-TYPE 95 77 96
'SELPLG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S836.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
SELPLG MUTATED 2 6 2
SELPLG WILD-TYPE 73 123 72
'SELPLG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S837.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
SELPLG MUTATED 2 2 2 3 0
SELPLG WILD-TYPE 37 76 59 82 6
'SELPLG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S838.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
SELPLG MUTATED 3 3 2 1
SELPLG WILD-TYPE 73 105 49 33
'SELPLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S839.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
SELPLG MUTATED 3 2 3
SELPLG WILD-TYPE 70 83 97
'SELPLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S840.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
SELPLG MUTATED 5 3 0
SELPLG WILD-TYPE 123 101 26
'CSN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 1

Table S841.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
CSN3 MUTATED 3 0 1
CSN3 WILD-TYPE 70 105 99
'CSN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S842.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
CSN3 MUTATED 3 1 0
CSN3 WILD-TYPE 89 111 74
'CSN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S843.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CSN3 MUTATED 0 2 1 0
CSN3 WILD-TYPE 46 56 25 38
'CSN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S844.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CSN3 MUTATED 0 2 1 0
CSN3 WILD-TYPE 27 56 33 49
'CSN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S845.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
CSN3 MUTATED 1 1 2
CSN3 WILD-TYPE 97 81 96
'CSN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S846.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
CSN3 MUTATED 0 2 2
CSN3 WILD-TYPE 75 127 72
'CSN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S847.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
CSN3 MUTATED 1 1 1 1 0
CSN3 WILD-TYPE 38 77 60 84 6
'CSN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S848.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
CSN3 MUTATED 1 1 1 1
CSN3 WILD-TYPE 75 107 50 33
'CSN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S849.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
CSN3 MUTATED 1 1 2
CSN3 WILD-TYPE 72 84 98
'CSN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S850.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
CSN3 MUTATED 3 0 1
CSN3 WILD-TYPE 125 104 25
'SLC7A11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S851.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
SLC7A11 MUTATED 4 6 2
SLC7A11 WILD-TYPE 69 99 98
'SLC7A11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S852.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
SLC7A11 MUTATED 6 4 2
SLC7A11 WILD-TYPE 86 108 72
'SLC7A11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S853.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SLC7A11 MUTATED 3 3 0 1
SLC7A11 WILD-TYPE 43 55 26 37
'SLC7A11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S854.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SLC7A11 MUTATED 2 3 0 2
SLC7A11 WILD-TYPE 25 55 34 47
'SLC7A11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S855.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
SLC7A11 MUTATED 4 4 4
SLC7A11 WILD-TYPE 94 78 94
'SLC7A11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S856.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
SLC7A11 MUTATED 3 5 4
SLC7A11 WILD-TYPE 72 124 70
'SLC7A11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S857.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
SLC7A11 MUTATED 2 5 2 3 0
SLC7A11 WILD-TYPE 37 73 59 82 6
'SLC7A11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S858.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
SLC7A11 MUTATED 2 6 2 2
SLC7A11 WILD-TYPE 74 102 49 32
'SLC7A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S859.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
SLC7A11 MUTATED 4 3 4
SLC7A11 WILD-TYPE 69 82 96
'SLC7A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S860.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
SLC7A11 MUTATED 4 5 2
SLC7A11 WILD-TYPE 124 99 24
'SYNE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S861.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
SYNE1 MUTATED 19 33 21
SYNE1 WILD-TYPE 54 72 79
'SYNE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S862.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
SYNE1 MUTATED 25 35 13
SYNE1 WILD-TYPE 67 77 61
'SYNE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S863.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SYNE1 MUTATED 17 15 6 9
SYNE1 WILD-TYPE 29 43 20 29
'SYNE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S864.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SYNE1 MUTATED 8 17 7 15
SYNE1 WILD-TYPE 19 41 27 34
'SYNE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S865.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
SYNE1 MUTATED 27 25 21
SYNE1 WILD-TYPE 71 57 77
'SYNE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S866.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
SYNE1 MUTATED 19 37 17
SYNE1 WILD-TYPE 56 92 57
'SYNE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S867.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
SYNE1 MUTATED 12 19 16 25 0
SYNE1 WILD-TYPE 27 59 45 60 6
'SYNE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S868.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
SYNE1 MUTATED 16 31 15 10
SYNE1 WILD-TYPE 60 77 36 24
'SYNE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S869.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
SYNE1 MUTATED 22 20 27
SYNE1 WILD-TYPE 51 65 73
'SYNE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S870.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
SYNE1 MUTATED 36 25 8
SYNE1 WILD-TYPE 92 79 18
'NFASC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S871.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
NFASC MUTATED 7 11 5
NFASC WILD-TYPE 66 94 95
'NFASC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S872.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
NFASC MUTATED 11 7 5
NFASC WILD-TYPE 81 105 69
'NFASC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S873.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NFASC MUTATED 4 6 1 2
NFASC WILD-TYPE 42 52 25 36
'NFASC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S874.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NFASC MUTATED 2 5 2 4
NFASC WILD-TYPE 25 53 32 45
'NFASC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S875.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
NFASC MUTATED 6 6 11
NFASC WILD-TYPE 92 76 87
'NFASC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S876.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
NFASC MUTATED 7 9 7
NFASC WILD-TYPE 68 120 67
'NFASC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S877.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
NFASC MUTATED 3 8 4 5 1
NFASC WILD-TYPE 36 70 57 80 5
'NFASC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S878.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
NFASC MUTATED 3 11 4 3
NFASC WILD-TYPE 73 97 47 31
'NFASC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S879.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
NFASC MUTATED 7 8 6
NFASC WILD-TYPE 66 77 94
'NFASC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S880.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
NFASC MUTATED 9 9 3
NFASC WILD-TYPE 119 95 23
'CCDC11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S881.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
CCDC11 MUTATED 5 6 6
CCDC11 WILD-TYPE 68 99 94
'CCDC11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 1

Table S882.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
CCDC11 MUTATED 9 7 1
CCDC11 WILD-TYPE 83 105 73
'CCDC11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S883.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CCDC11 MUTATED 1 7 2 4
CCDC11 WILD-TYPE 45 51 24 34
'CCDC11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S884.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CCDC11 MUTATED 0 4 5 5
CCDC11 WILD-TYPE 27 54 29 44
'CCDC11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S885.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
CCDC11 MUTATED 3 8 6
CCDC11 WILD-TYPE 95 74 92
'CCDC11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S886.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
CCDC11 MUTATED 2 10 5
CCDC11 WILD-TYPE 73 119 69
'CCDC11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S887.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
CCDC11 MUTATED 2 2 5 8 0
CCDC11 WILD-TYPE 37 76 56 77 6
'CCDC11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S888.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
CCDC11 MUTATED 4 6 5 2
CCDC11 WILD-TYPE 72 102 46 32
'CCDC11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 1

Table S889.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
CCDC11 MUTATED 6 1 10
CCDC11 WILD-TYPE 67 84 90

Figure S61.  Get High-res Image Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CCDC11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S890.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
CCDC11 MUTATED 12 3 2
CCDC11 WILD-TYPE 116 101 24
'IL31RA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S891.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
IL31RA MUTATED 6 5 6
IL31RA WILD-TYPE 67 100 94
'IL31RA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S892.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
IL31RA MUTATED 8 5 4
IL31RA WILD-TYPE 84 107 70
'IL31RA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S893.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
IL31RA MUTATED 2 4 0 3
IL31RA WILD-TYPE 44 54 26 35
'IL31RA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S894.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
IL31RA MUTATED 1 4 2 2
IL31RA WILD-TYPE 26 54 32 47
'IL31RA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S895.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
IL31RA MUTATED 9 5 3
IL31RA WILD-TYPE 89 77 95
'IL31RA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S896.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
IL31RA MUTATED 6 9 2
IL31RA WILD-TYPE 69 120 72
'IL31RA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S897.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
IL31RA MUTATED 2 3 5 7 0
IL31RA WILD-TYPE 37 75 56 78 6
'IL31RA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0635 (Fisher's exact test), Q value = 1

Table S898.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
IL31RA MUTATED 8 8 0 1
IL31RA WILD-TYPE 68 100 51 33
'IL31RA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S899.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
IL31RA MUTATED 6 2 7
IL31RA WILD-TYPE 67 83 93
'IL31RA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S900.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
IL31RA MUTATED 10 4 1
IL31RA WILD-TYPE 118 100 25
'MLL MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S901.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
MLL MUTATED 10 14 14
MLL WILD-TYPE 63 91 86
'MLL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S902.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
MLL MUTATED 15 14 9
MLL WILD-TYPE 77 98 65
'MLL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0726 (Fisher's exact test), Q value = 1

Table S903.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MLL MUTATED 2 10 6 7
MLL WILD-TYPE 44 48 20 31
'MLL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S904.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MLL MUTATED 2 12 4 7
MLL WILD-TYPE 25 46 30 42
'MLL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S905.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
MLL MUTATED 11 15 12
MLL WILD-TYPE 87 67 86
'MLL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S906.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
MLL MUTATED 9 21 8
MLL WILD-TYPE 66 108 66
'MLL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S907.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
MLL MUTATED 7 10 4 15 1
MLL WILD-TYPE 32 68 57 70 5
'MLL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S908.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
MLL MUTATED 7 19 6 5
MLL WILD-TYPE 69 89 45 29
'MLL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S909.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
MLL MUTATED 14 8 14
MLL WILD-TYPE 59 77 86
'MLL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S910.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
MLL MUTATED 20 13 3
MLL WILD-TYPE 108 91 23
'DIRC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S911.  Gene #92: 'DIRC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
DIRC2 MUTATED 0 3 1
DIRC2 WILD-TYPE 73 102 99
'DIRC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S912.  Gene #92: 'DIRC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
DIRC2 MUTATED 2 1 1
DIRC2 WILD-TYPE 90 111 73
'DIRC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S913.  Gene #92: 'DIRC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
DIRC2 MUTATED 1 2 1
DIRC2 WILD-TYPE 97 80 97
'DIRC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S914.  Gene #92: 'DIRC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
DIRC2 MUTATED 1 3 0
DIRC2 WILD-TYPE 74 126 74
'DIRC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S915.  Gene #92: 'DIRC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
DIRC2 MUTATED 0 3 0 1 0
DIRC2 WILD-TYPE 39 75 61 84 6
'DIRC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S916.  Gene #92: 'DIRC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
DIRC2 MUTATED 2 2 0 0
DIRC2 WILD-TYPE 74 106 51 34
'DIRC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S917.  Gene #92: 'DIRC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
DIRC2 MUTATED 2 1 1
DIRC2 WILD-TYPE 71 84 99
'DIRC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S918.  Gene #92: 'DIRC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
DIRC2 MUTATED 2 2 0
DIRC2 WILD-TYPE 126 102 26
'ADAM22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S919.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
ADAM22 MUTATED 5 9 5
ADAM22 WILD-TYPE 68 96 95
'ADAM22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S920.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
ADAM22 MUTATED 7 10 2
ADAM22 WILD-TYPE 85 102 72
'ADAM22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 1

Table S921.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ADAM22 MUTATED 6 0 3 3
ADAM22 WILD-TYPE 40 58 23 35

Figure S62.  Get High-res Image Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ADAM22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S922.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ADAM22 MUTATED 4 2 3 3
ADAM22 WILD-TYPE 23 56 31 46
'ADAM22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S923.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
ADAM22 MUTATED 10 6 3
ADAM22 WILD-TYPE 88 76 95
'ADAM22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S924.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
ADAM22 MUTATED 6 10 3
ADAM22 WILD-TYPE 69 119 71
'ADAM22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.991 (Fisher's exact test), Q value = 1

Table S925.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
ADAM22 MUTATED 2 6 4 6 0
ADAM22 WILD-TYPE 37 72 57 79 6
'ADAM22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S926.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
ADAM22 MUTATED 6 8 2 2
ADAM22 WILD-TYPE 70 100 49 32
'ADAM22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S927.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
ADAM22 MUTATED 6 5 7
ADAM22 WILD-TYPE 67 80 93
'ADAM22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S928.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
ADAM22 MUTATED 10 7 1
ADAM22 WILD-TYPE 118 97 25
'PLCXD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S929.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
PLCXD2 MUTATED 1 4 4
PLCXD2 WILD-TYPE 72 101 96
'PLCXD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S930.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
PLCXD2 MUTATED 5 1 3
PLCXD2 WILD-TYPE 87 111 71
'PLCXD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S931.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PLCXD2 MUTATED 1 3 0 1
PLCXD2 WILD-TYPE 45 55 26 37
'PLCXD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S932.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PLCXD2 MUTATED 1 0 1 3
PLCXD2 WILD-TYPE 26 58 33 46
'PLCXD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S933.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
PLCXD2 MUTATED 5 1 3
PLCXD2 WILD-TYPE 93 81 95
'PLCXD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S934.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
PLCXD2 MUTATED 4 3 2
PLCXD2 WILD-TYPE 71 126 72
'PLCXD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S935.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
PLCXD2 MUTATED 1 4 2 2 0
PLCXD2 WILD-TYPE 38 74 59 83 6
'PLCXD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S936.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
PLCXD2 MUTATED 3 6 0 0
PLCXD2 WILD-TYPE 73 102 51 34
'PLCXD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S937.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
PLCXD2 MUTATED 3 2 4
PLCXD2 WILD-TYPE 70 83 96
'PLCXD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S938.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
PLCXD2 MUTATED 5 4 0
PLCXD2 WILD-TYPE 123 100 26
'EDN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S939.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
EDN1 MUTATED 2 4 3
EDN1 WILD-TYPE 71 101 97
'EDN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S940.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
EDN1 MUTATED 3 4 2
EDN1 WILD-TYPE 89 108 72
'EDN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S941.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
EDN1 MUTATED 1 3 1 0
EDN1 WILD-TYPE 45 55 25 38
'EDN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S942.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
EDN1 MUTATED 0 2 1 2
EDN1 WILD-TYPE 27 56 33 47
'EDN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S943.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
EDN1 MUTATED 3 4 2
EDN1 WILD-TYPE 95 78 96
'EDN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S944.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
EDN1 MUTATED 3 4 2
EDN1 WILD-TYPE 72 125 72
'EDN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S945.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
EDN1 MUTATED 1 2 4 2 0
EDN1 WILD-TYPE 38 76 57 83 6
'EDN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S946.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
EDN1 MUTATED 2 3 4 0
EDN1 WILD-TYPE 74 105 47 34
'EDN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S947.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
EDN1 MUTATED 5 1 3
EDN1 WILD-TYPE 68 84 97
'EDN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S948.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
EDN1 MUTATED 4 5 0
EDN1 WILD-TYPE 124 99 26
'HTR7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S949.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
HTR7 MUTATED 3 4 2
HTR7 WILD-TYPE 70 101 98
'HTR7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S950.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
HTR7 MUTATED 5 3 1
HTR7 WILD-TYPE 87 109 73
'HTR7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S951.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
HTR7 MUTATED 3 1 0 1
HTR7 WILD-TYPE 43 57 26 37
'HTR7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S952.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
HTR7 MUTATED 1 3 0 1
HTR7 WILD-TYPE 26 55 34 48
'HTR7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S953.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
HTR7 MUTATED 1 2 6
HTR7 WILD-TYPE 97 80 92
'HTR7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S954.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
HTR7 MUTATED 3 2 4
HTR7 WILD-TYPE 72 127 70
'HTR7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S955.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
HTR7 MUTATED 0 2 4 2 0
HTR7 WILD-TYPE 39 76 57 83 6
'HTR7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S956.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
HTR7 MUTATED 2 2 4 0
HTR7 WILD-TYPE 74 106 47 34
'HTR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S957.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
HTR7 MUTATED 2 2 4
HTR7 WILD-TYPE 71 83 96
'HTR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S958.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
HTR7 MUTATED 3 5 0
HTR7 WILD-TYPE 125 99 26
'TLR9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S959.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
TLR9 MUTATED 5 10 3
TLR9 WILD-TYPE 68 95 97
'TLR9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S960.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
TLR9 MUTATED 9 7 2
TLR9 WILD-TYPE 83 105 72
'TLR9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S961.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TLR9 MUTATED 3 4 1 2
TLR9 WILD-TYPE 43 54 25 36
'TLR9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S962.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
TLR9 MUTATED 3 2 3 2
TLR9 WILD-TYPE 24 56 31 47
'TLR9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S963.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
TLR9 MUTATED 6 7 5
TLR9 WILD-TYPE 92 75 93
'TLR9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S964.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
TLR9 MUTATED 4 9 5
TLR9 WILD-TYPE 71 120 69
'TLR9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S965.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
TLR9 MUTATED 2 6 3 5 2
TLR9 WILD-TYPE 37 72 58 80 4
'TLR9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S966.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
TLR9 MUTATED 3 9 4 2
TLR9 WILD-TYPE 73 99 47 32
'TLR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S967.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
TLR9 MUTATED 7 4 6
TLR9 WILD-TYPE 66 81 94
'TLR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S968.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
TLR9 MUTATED 8 8 1
TLR9 WILD-TYPE 120 96 25
'MYH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0745 (Fisher's exact test), Q value = 1

Table S969.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
MYH1 MUTATED 18 32 17
MYH1 WILD-TYPE 55 73 83
'MYH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 1

Table S970.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
MYH1 MUTATED 28 30 9
MYH1 WILD-TYPE 64 82 65

Figure S63.  Get High-res Image Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MYH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S971.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MYH1 MUTATED 12 16 3 10
MYH1 WILD-TYPE 34 42 23 28
'MYH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S972.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MYH1 MUTATED 4 13 8 16
MYH1 WILD-TYPE 23 45 26 33
'MYH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S973.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
MYH1 MUTATED 20 26 21
MYH1 WILD-TYPE 78 56 77
'MYH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S974.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
MYH1 MUTATED 14 34 19
MYH1 WILD-TYPE 61 95 55
'MYH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S975.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
MYH1 MUTATED 9 16 17 20 1
MYH1 WILD-TYPE 30 62 44 65 5
'MYH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S976.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
MYH1 MUTATED 20 23 11 9
MYH1 WILD-TYPE 56 85 40 25
'MYH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S977.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
MYH1 MUTATED 16 16 30
MYH1 WILD-TYPE 57 69 70
'MYH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S978.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
MYH1 MUTATED 33 21 8
MYH1 WILD-TYPE 95 83 18
'EPHA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S979.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
EPHA3 MUTATED 7 12 11
EPHA3 WILD-TYPE 66 93 89
'EPHA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S980.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
EPHA3 MUTATED 9 14 7
EPHA3 WILD-TYPE 83 98 67
'EPHA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S981.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
EPHA3 MUTATED 5 5 2 4
EPHA3 WILD-TYPE 41 53 24 34
'EPHA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S982.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
EPHA3 MUTATED 3 5 2 6
EPHA3 WILD-TYPE 24 53 32 43
'EPHA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S983.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
EPHA3 MUTATED 11 8 11
EPHA3 WILD-TYPE 87 74 87
'EPHA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S984.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
EPHA3 MUTATED 8 12 10
EPHA3 WILD-TYPE 67 117 64
'EPHA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S985.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
EPHA3 MUTATED 2 7 12 7 1
EPHA3 WILD-TYPE 37 71 49 78 5
'EPHA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 1

Table S986.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
EPHA3 MUTATED 8 8 12 1
EPHA3 WILD-TYPE 68 100 39 33

Figure S64.  Get High-res Image Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPHA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S987.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
EPHA3 MUTATED 11 6 12
EPHA3 WILD-TYPE 62 79 88
'EPHA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S988.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
EPHA3 MUTATED 18 10 1
EPHA3 WILD-TYPE 110 94 25
'ARL16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S989.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
ARL16 MUTATED 4 1 2
ARL16 WILD-TYPE 69 104 98
'ARL16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S990.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
ARL16 MUTATED 3 2 2
ARL16 WILD-TYPE 89 110 72
'ARL16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S991.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ARL16 MUTATED 2 3 0 0
ARL16 WILD-TYPE 44 55 26 38
'ARL16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S992.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ARL16 MUTATED 0 4 0 1
ARL16 WILD-TYPE 27 54 34 48
'ARL16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S993.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
ARL16 MUTATED 1 3 3
ARL16 WILD-TYPE 97 79 95
'ARL16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S994.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
ARL16 MUTATED 0 4 3
ARL16 WILD-TYPE 75 125 71
'ARL16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S995.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
ARL16 MUTATED 1 3 3 0 0
ARL16 WILD-TYPE 38 75 58 85 6
'ARL16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0481 (Fisher's exact test), Q value = 1

Table S996.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
ARL16 MUTATED 4 0 2 1
ARL16 WILD-TYPE 72 108 49 33

Figure S65.  Get High-res Image Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARL16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S997.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
ARL16 MUTATED 4 2 1
ARL16 WILD-TYPE 69 83 99
'ARL16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S998.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
ARL16 MUTATED 4 2 1
ARL16 WILD-TYPE 124 102 25
'DDX17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S999.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
DDX17 MUTATED 5 4 2
DDX17 WILD-TYPE 68 101 98
'DDX17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0873 (Fisher's exact test), Q value = 1

Table S1000.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
DDX17 MUTATED 5 6 0
DDX17 WILD-TYPE 87 106 74
'DDX17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S1001.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DDX17 MUTATED 2 2 1 3
DDX17 WILD-TYPE 44 56 25 35
'DDX17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S1002.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DDX17 MUTATED 1 4 1 2
DDX17 WILD-TYPE 26 54 33 47
'DDX17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1003.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
DDX17 MUTATED 4 3 4
DDX17 WILD-TYPE 94 79 94
'DDX17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S1004.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
DDX17 MUTATED 2 5 4
DDX17 WILD-TYPE 73 124 70
'DDX17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S1005.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
DDX17 MUTATED 4 3 1 2 0
DDX17 WILD-TYPE 35 75 60 83 6
'DDX17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S1006.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
DDX17 MUTATED 2 4 2 2
DDX17 WILD-TYPE 74 104 49 32
'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1007.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
DDX17 MUTATED 2 2 6
DDX17 WILD-TYPE 71 83 94
'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S1008.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
DDX17 MUTATED 4 4 2
DDX17 WILD-TYPE 124 100 24
'MAN1A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S1009.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
MAN1A1 MUTATED 2 8 4
MAN1A1 WILD-TYPE 71 97 96
'MAN1A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S1010.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
MAN1A1 MUTATED 5 8 1
MAN1A1 WILD-TYPE 87 104 73
'MAN1A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S1011.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MAN1A1 MUTATED 3 4 0 1
MAN1A1 WILD-TYPE 43 54 26 37
'MAN1A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S1012.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MAN1A1 MUTATED 2 4 2 0
MAN1A1 WILD-TYPE 25 54 32 49
'MAN1A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S1013.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
MAN1A1 MUTATED 5 7 2
MAN1A1 WILD-TYPE 93 75 96
'MAN1A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S1014.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
MAN1A1 MUTATED 3 8 3
MAN1A1 WILD-TYPE 72 121 71
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S1015.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
MAN1A1 MUTATED 1 3 5 3 1
MAN1A1 WILD-TYPE 38 75 56 82 5
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S1016.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
MAN1A1 MUTATED 6 2 4 1
MAN1A1 WILD-TYPE 70 106 47 33
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1017.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
MAN1A1 MUTATED 7 2 4
MAN1A1 WILD-TYPE 66 83 96
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1018.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
MAN1A1 MUTATED 8 4 1
MAN1A1 WILD-TYPE 120 100 25
'ADAM30 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S1019.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
ADAM30 MUTATED 7 14 7
ADAM30 WILD-TYPE 66 91 93
'ADAM30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S1020.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
ADAM30 MUTATED 8 12 8
ADAM30 WILD-TYPE 84 100 66
'ADAM30 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S1021.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ADAM30 MUTATED 7 6 4 2
ADAM30 WILD-TYPE 39 52 22 36
'ADAM30 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0399 (Fisher's exact test), Q value = 1

Table S1022.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ADAM30 MUTATED 3 7 0 9
ADAM30 WILD-TYPE 24 51 34 40

Figure S66.  Get High-res Image Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S1023.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
ADAM30 MUTATED 12 10 6
ADAM30 WILD-TYPE 86 72 92
'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S1024.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
ADAM30 MUTATED 11 13 4
ADAM30 WILD-TYPE 64 116 70
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 1

Table S1025.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
ADAM30 MUTATED 3 3 12 9 0
ADAM30 WILD-TYPE 36 75 49 76 6

Figure S67.  Get High-res Image Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S1026.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
ADAM30 MUTATED 10 11 4 2
ADAM30 WILD-TYPE 66 97 47 32
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.087 (Fisher's exact test), Q value = 1

Table S1027.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
ADAM30 MUTATED 9 4 14
ADAM30 WILD-TYPE 64 81 86
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S1028.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
ADAM30 MUTATED 17 8 2
ADAM30 WILD-TYPE 111 96 24
'NBEAL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0935 (Fisher's exact test), Q value = 1

Table S1029.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
NBEAL1 MUTATED 6 17 7
NBEAL1 WILD-TYPE 67 88 93
'NBEAL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 1

Table S1030.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
NBEAL1 MUTATED 9 18 3
NBEAL1 WILD-TYPE 83 94 71

Figure S68.  Get High-res Image Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NBEAL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S1031.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NBEAL1 MUTATED 6 9 5 3
NBEAL1 WILD-TYPE 40 49 21 35
'NBEAL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.073 (Fisher's exact test), Q value = 1

Table S1032.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NBEAL1 MUTATED 4 7 1 11
NBEAL1 WILD-TYPE 23 51 33 38
'NBEAL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1033.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
NBEAL1 MUTATED 9 10 11
NBEAL1 WILD-TYPE 89 72 87
'NBEAL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S1034.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
NBEAL1 MUTATED 4 16 10
NBEAL1 WILD-TYPE 71 113 64
'NBEAL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S1035.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
NBEAL1 MUTATED 5 6 8 10 0
NBEAL1 WILD-TYPE 34 72 53 75 6
'NBEAL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S1036.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
NBEAL1 MUTATED 6 13 8 2
NBEAL1 WILD-TYPE 70 95 43 32
'NBEAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S1037.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
NBEAL1 MUTATED 8 9 12
NBEAL1 WILD-TYPE 65 76 88
'NBEAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S1038.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
NBEAL1 MUTATED 14 13 2
NBEAL1 WILD-TYPE 114 91 24
'WDR65 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S1039.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
WDR65 MUTATED 7 9 5
WDR65 WILD-TYPE 66 96 95
'WDR65 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S1040.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
WDR65 MUTATED 8 8 5
WDR65 WILD-TYPE 84 104 69
'WDR65 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S1041.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
WDR65 MUTATED 3 5 0 5
WDR65 WILD-TYPE 43 53 26 33
'WDR65 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S1042.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
WDR65 MUTATED 1 5 3 4
WDR65 WILD-TYPE 26 53 31 45
'WDR65 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S1043.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
WDR65 MUTATED 6 6 9
WDR65 WILD-TYPE 92 76 89
'WDR65 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S1044.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
WDR65 MUTATED 4 11 6
WDR65 WILD-TYPE 71 118 68
'WDR65 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S1045.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
WDR65 MUTATED 4 3 7 5 1
WDR65 WILD-TYPE 35 75 54 80 5
'WDR65 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.069 (Fisher's exact test), Q value = 1

Table S1046.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
WDR65 MUTATED 8 3 5 4
WDR65 WILD-TYPE 68 105 46 30
'WDR65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S1047.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
WDR65 MUTATED 6 4 10
WDR65 WILD-TYPE 67 81 90
'WDR65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S1048.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
WDR65 MUTATED 9 8 3
WDR65 WILD-TYPE 119 96 23
'C6ORF165 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S1049.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
C6ORF165 MUTATED 5 8 6
C6ORF165 WILD-TYPE 68 97 94
'C6ORF165 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S1050.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
C6ORF165 MUTATED 7 8 4
C6ORF165 WILD-TYPE 85 104 70
'C6ORF165 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S1051.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C6ORF165 MUTATED 1 3 3 4
C6ORF165 WILD-TYPE 45 55 23 34
'C6ORF165 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S1052.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
C6ORF165 MUTATED 0 3 2 6
C6ORF165 WILD-TYPE 27 55 32 43
'C6ORF165 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S1053.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
C6ORF165 MUTATED 8 7 4
C6ORF165 WILD-TYPE 90 75 94
'C6ORF165 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S1054.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
C6ORF165 MUTATED 6 9 4
C6ORF165 WILD-TYPE 69 120 70
'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S1055.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
C6ORF165 MUTATED 1 5 5 7 0
C6ORF165 WILD-TYPE 38 73 56 78 6
'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0447 (Fisher's exact test), Q value = 1

Table S1056.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
C6ORF165 MUTATED 2 10 6 0
C6ORF165 WILD-TYPE 74 98 45 34

Figure S69.  Get High-res Image Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S1057.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
C6ORF165 MUTATED 4 4 10
C6ORF165 WILD-TYPE 69 81 90
'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S1058.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
C6ORF165 MUTATED 10 8 0
C6ORF165 WILD-TYPE 118 96 26
'RNF133 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S1059.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
RNF133 MUTATED 1 4 3
RNF133 WILD-TYPE 72 101 97
'RNF133 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S1060.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
RNF133 MUTATED 2 5 1
RNF133 WILD-TYPE 90 107 73
'RNF133 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1061.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RNF133 MUTATED 2 1 0 3
RNF133 WILD-TYPE 44 57 26 35
'RNF133 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S1062.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
RNF133 MUTATED 2 2 0 2
RNF133 WILD-TYPE 25 56 34 47
'RNF133 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S1063.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
RNF133 MUTATED 4 2 2
RNF133 WILD-TYPE 94 80 96
'RNF133 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1064.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
RNF133 MUTATED 2 4 2
RNF133 WILD-TYPE 73 125 72
'RNF133 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S1065.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
RNF133 MUTATED 3 3 0 2 0
RNF133 WILD-TYPE 36 75 61 83 6
'RNF133 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S1066.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
RNF133 MUTATED 1 4 1 2
RNF133 WILD-TYPE 75 104 50 32
'RNF133 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S1067.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
RNF133 MUTATED 2 4 2
RNF133 WILD-TYPE 71 81 98
'RNF133 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S1068.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
RNF133 MUTATED 3 4 1
RNF133 WILD-TYPE 125 100 25
'GTPBP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1069.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
GTPBP4 MUTATED 3 3 2
GTPBP4 WILD-TYPE 70 102 98
'GTPBP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S1070.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
GTPBP4 MUTATED 4 3 1
GTPBP4 WILD-TYPE 88 109 73
'GTPBP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1071.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
GTPBP4 MUTATED 0 2 0 1
GTPBP4 WILD-TYPE 46 56 26 37
'GTPBP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S1072.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
GTPBP4 MUTATED 0 3 0 0
GTPBP4 WILD-TYPE 27 55 34 49
'GTPBP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S1073.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
GTPBP4 MUTATED 1 4 3
GTPBP4 WILD-TYPE 97 78 95
'GTPBP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S1074.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
GTPBP4 MUTATED 1 4 3
GTPBP4 WILD-TYPE 74 125 71
'GTPBP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S1075.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
GTPBP4 MUTATED 1 4 1 2 0
GTPBP4 WILD-TYPE 38 74 60 83 6
'GTPBP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S1076.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
GTPBP4 MUTATED 2 3 2 1
GTPBP4 WILD-TYPE 74 105 49 33
'GTPBP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1077.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
GTPBP4 MUTATED 4 3 1
GTPBP4 WILD-TYPE 69 82 99
'GTPBP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S1078.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
GTPBP4 MUTATED 3 4 1
GTPBP4 WILD-TYPE 125 100 25
'ACSBG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S1079.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
ACSBG1 MUTATED 2 7 3
ACSBG1 WILD-TYPE 71 98 97
'ACSBG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S1080.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
ACSBG1 MUTATED 4 6 2
ACSBG1 WILD-TYPE 88 106 72
'ACSBG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1081.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ACSBG1 MUTATED 1 3 0 2
ACSBG1 WILD-TYPE 45 55 26 36
'ACSBG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S1082.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ACSBG1 MUTATED 1 4 1 0
ACSBG1 WILD-TYPE 26 54 33 49
'ACSBG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S1083.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
ACSBG1 MUTATED 3 6 3
ACSBG1 WILD-TYPE 95 76 95
'ACSBG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S1084.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
ACSBG1 MUTATED 2 7 3
ACSBG1 WILD-TYPE 73 122 71
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1085.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
ACSBG1 MUTATED 2 2 4 4 0
ACSBG1 WILD-TYPE 37 76 57 81 6
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S1086.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
ACSBG1 MUTATED 2 4 4 2
ACSBG1 WILD-TYPE 74 104 47 32
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1087.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
ACSBG1 MUTATED 4 3 4
ACSBG1 WILD-TYPE 69 82 96
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1088.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
ACSBG1 MUTATED 4 5 2
ACSBG1 WILD-TYPE 124 99 24
'TPTE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S1089.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
TPTE MUTATED 16 21 23
TPTE WILD-TYPE 57 84 77
'TPTE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0463 (Fisher's exact test), Q value = 1

Table S1090.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
TPTE MUTATED 25 16 19
TPTE WILD-TYPE 67 96 55

Figure S70.  Get High-res Image Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TPTE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0695 (Fisher's exact test), Q value = 1

Table S1091.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TPTE MUTATED 8 14 2 13
TPTE WILD-TYPE 38 44 24 25
'TPTE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S1092.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
TPTE MUTATED 6 13 6 12
TPTE WILD-TYPE 21 45 28 37
'TPTE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.087 (Fisher's exact test), Q value = 1

Table S1093.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
TPTE MUTATED 14 20 26
TPTE WILD-TYPE 84 62 72
'TPTE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S1094.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
TPTE MUTATED 15 25 20
TPTE WILD-TYPE 60 104 54
'TPTE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S1095.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
TPTE MUTATED 10 13 13 19 1
TPTE WILD-TYPE 29 65 48 66 5
'TPTE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S1096.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
TPTE MUTATED 12 23 14 7
TPTE WILD-TYPE 64 85 37 27
'TPTE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S1097.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
TPTE MUTATED 16 16 24
TPTE WILD-TYPE 57 69 76
'TPTE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S1098.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
TPTE MUTATED 33 16 7
TPTE WILD-TYPE 95 88 19
'CLCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S1099.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
CLCC1 MUTATED 5 4 4
CLCC1 WILD-TYPE 68 101 96
'CLCC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S1100.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
CLCC1 MUTATED 6 4 3
CLCC1 WILD-TYPE 86 108 71
'CLCC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S1101.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CLCC1 MUTATED 3 4 1 1
CLCC1 WILD-TYPE 43 54 25 37
'CLCC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1102.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CLCC1 MUTATED 3 3 1 2
CLCC1 WILD-TYPE 24 55 33 47
'CLCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S1103.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
CLCC1 MUTATED 6 3 4
CLCC1 WILD-TYPE 92 79 94
'CLCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S1104.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
CLCC1 MUTATED 5 5 3
CLCC1 WILD-TYPE 70 124 71
'CLCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S1105.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
CLCC1 MUTATED 2 2 4 5 0
CLCC1 WILD-TYPE 37 76 57 80 6
'CLCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S1106.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
CLCC1 MUTATED 6 3 3 1
CLCC1 WILD-TYPE 70 105 48 33
'CLCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0976 (Fisher's exact test), Q value = 1

Table S1107.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
CLCC1 MUTATED 2 2 9
CLCC1 WILD-TYPE 71 83 91
'CLCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S1108.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
CLCC1 MUTATED 8 4 1
CLCC1 WILD-TYPE 120 100 25
'PPAP2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S1109.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
PPAP2B MUTATED 1 6 3
PPAP2B WILD-TYPE 72 99 97
'PPAP2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S1110.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
PPAP2B MUTATED 5 3 2
PPAP2B WILD-TYPE 87 109 72
'PPAP2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S1111.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PPAP2B MUTATED 3 1 0 0
PPAP2B WILD-TYPE 43 57 26 38
'PPAP2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S1112.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PPAP2B MUTATED 1 2 0 1
PPAP2B WILD-TYPE 26 56 34 48
'PPAP2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S1113.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
PPAP2B MUTATED 3 5 2
PPAP2B WILD-TYPE 95 77 96
'PPAP2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S1114.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
PPAP2B MUTATED 2 6 2
PPAP2B WILD-TYPE 73 123 72
'PPAP2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S1115.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
PPAP2B MUTATED 1 2 3 2 0
PPAP2B WILD-TYPE 38 76 58 83 6
'PPAP2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S1116.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
PPAP2B MUTATED 4 2 1 1
PPAP2B WILD-TYPE 72 106 50 33
'PPAP2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S1117.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
PPAP2B MUTATED 3 2 2
PPAP2B WILD-TYPE 70 83 98
'PPAP2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S1118.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
PPAP2B MUTATED 4 2 1
PPAP2B WILD-TYPE 124 102 25
'CD300E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1119.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
CD300E MUTATED 4 2 4
CD300E WILD-TYPE 69 103 96
'CD300E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S1120.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
CD300E MUTATED 2 5 3
CD300E WILD-TYPE 90 107 71
'CD300E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S1121.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CD300E MUTATED 1 4 0 2
CD300E WILD-TYPE 45 54 26 36
'CD300E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S1122.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CD300E MUTATED 0 3 2 2
CD300E WILD-TYPE 27 55 32 47
'CD300E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S1123.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
CD300E MUTATED 1 3 6
CD300E WILD-TYPE 97 79 92
'CD300E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S1124.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
CD300E MUTATED 2 4 4
CD300E WILD-TYPE 73 125 70
'CD300E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S1125.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
CD300E MUTATED 2 2 3 2 0
CD300E WILD-TYPE 37 76 58 83 6
'CD300E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S1126.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
CD300E MUTATED 1 3 3 2
CD300E WILD-TYPE 75 105 48 32
'CD300E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S1127.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
CD300E MUTATED 4 3 2
CD300E WILD-TYPE 69 82 98
'CD300E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S1128.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
CD300E MUTATED 3 4 2
CD300E WILD-TYPE 125 100 24
'ALDH5A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S1129.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
ALDH5A1 MUTATED 2 5 3
ALDH5A1 WILD-TYPE 71 100 97
'ALDH5A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0735 (Fisher's exact test), Q value = 1

Table S1130.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
ALDH5A1 MUTATED 3 7 0
ALDH5A1 WILD-TYPE 89 105 74
'ALDH5A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S1131.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ALDH5A1 MUTATED 3 1 2 1
ALDH5A1 WILD-TYPE 43 57 24 37
'ALDH5A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S1132.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ALDH5A1 MUTATED 1 2 2 2
ALDH5A1 WILD-TYPE 26 56 32 47
'ALDH5A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 1

Table S1133.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
ALDH5A1 MUTATED 4 6 0
ALDH5A1 WILD-TYPE 94 76 98

Figure S71.  Get High-res Image Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ALDH5A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0491 (Fisher's exact test), Q value = 1

Table S1134.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
ALDH5A1 MUTATED 2 8 0
ALDH5A1 WILD-TYPE 73 121 74

Figure S72.  Get High-res Image Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ALDH5A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S1135.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
ALDH5A1 MUTATED 2 2 2 4 0
ALDH5A1 WILD-TYPE 37 76 59 81 6
'ALDH5A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S1136.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
ALDH5A1 MUTATED 3 5 0 2
ALDH5A1 WILD-TYPE 73 103 51 32
'ALDH5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0724 (Fisher's exact test), Q value = 1

Table S1137.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
ALDH5A1 MUTATED 6 1 3
ALDH5A1 WILD-TYPE 67 84 97
'ALDH5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S1138.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
ALDH5A1 MUTATED 6 2 2
ALDH5A1 WILD-TYPE 122 102 24
'SPRYD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S1139.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
SPRYD3 MUTATED 1 3 4
SPRYD3 WILD-TYPE 72 102 96
'SPRYD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1140.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
SPRYD3 MUTATED 3 3 2
SPRYD3 WILD-TYPE 89 109 72
'SPRYD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1141.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SPRYD3 MUTATED 0 2 0 1
SPRYD3 WILD-TYPE 46 56 26 37
'SPRYD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1142.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SPRYD3 MUTATED 0 1 0 2
SPRYD3 WILD-TYPE 27 57 34 47
'SPRYD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S1143.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
SPRYD3 MUTATED 4 2 2
SPRYD3 WILD-TYPE 94 80 96
'SPRYD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S1144.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
SPRYD3 MUTATED 3 4 1
SPRYD3 WILD-TYPE 72 125 73
'SPRYD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S1145.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
SPRYD3 MUTATED 3 1 2 2 0
SPRYD3 WILD-TYPE 36 77 59 83 6
'SPRYD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1146.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
SPRYD3 MUTATED 2 4 1 1
SPRYD3 WILD-TYPE 74 104 50 33
'SPRYD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1147.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
SPRYD3 MUTATED 2 1 4
SPRYD3 WILD-TYPE 71 84 96
'SPRYD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S1148.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
SPRYD3 MUTATED 5 1 1
SPRYD3 WILD-TYPE 123 103 25
'MAP3K5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S1149.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
MAP3K5 MUTATED 2 11 7
MAP3K5 WILD-TYPE 71 94 93
'MAP3K5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1150.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
MAP3K5 MUTATED 6 11 3
MAP3K5 WILD-TYPE 86 101 71
'MAP3K5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S1151.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MAP3K5 MUTATED 6 4 0 2
MAP3K5 WILD-TYPE 40 54 26 36
'MAP3K5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S1152.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MAP3K5 MUTATED 2 6 1 3
MAP3K5 WILD-TYPE 25 52 33 46
'MAP3K5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 1

Table S1153.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
MAP3K5 MUTATED 2 11 7
MAP3K5 WILD-TYPE 96 71 91

Figure S73.  Get High-res Image Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAP3K5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1154.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
MAP3K5 MUTATED 4 12 4
MAP3K5 WILD-TYPE 71 117 70
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1155.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
MAP3K5 MUTATED 1 8 4 5 1
MAP3K5 WILD-TYPE 38 70 57 80 5
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S1156.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
MAP3K5 MUTATED 5 7 6 1
MAP3K5 WILD-TYPE 71 101 45 33
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S1157.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
MAP3K5 MUTATED 6 7 6
MAP3K5 WILD-TYPE 67 78 94
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S1158.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
MAP3K5 MUTATED 8 10 1
MAP3K5 WILD-TYPE 120 94 25
'CASP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S1159.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
CASP8 MUTATED 2 2 5
CASP8 WILD-TYPE 71 103 95
'CASP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S1160.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
CASP8 MUTATED 5 3 1
CASP8 WILD-TYPE 87 109 73
'CASP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S1161.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CASP8 MUTATED 1 3 0 3
CASP8 WILD-TYPE 45 55 26 35
'CASP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S1162.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CASP8 MUTATED 1 4 1 1
CASP8 WILD-TYPE 26 54 33 48
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S1163.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
CASP8 MUTATED 4 0 5
CASP8 WILD-TYPE 94 82 93
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S1164.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
CASP8 MUTATED 3 3 3
CASP8 WILD-TYPE 72 126 71
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S1165.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
CASP8 MUTATED 1 1 3 4 0
CASP8 WILD-TYPE 38 77 58 81 6
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S1166.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
CASP8 MUTATED 1 5 2 1
CASP8 WILD-TYPE 75 103 49 33
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0605 (Fisher's exact test), Q value = 1

Table S1167.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
CASP8 MUTATED 3 0 6
CASP8 WILD-TYPE 70 85 94
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S1168.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
CASP8 MUTATED 5 3 1
CASP8 WILD-TYPE 123 101 25
'SNCAIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1169.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
SNCAIP MUTATED 13 20 16
SNCAIP WILD-TYPE 60 85 84
'SNCAIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S1170.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
SNCAIP MUTATED 17 21 11
SNCAIP WILD-TYPE 75 91 63
'SNCAIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S1171.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SNCAIP MUTATED 10 9 2 6
SNCAIP WILD-TYPE 36 49 24 32
'SNCAIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1172.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SNCAIP MUTATED 5 11 5 6
SNCAIP WILD-TYPE 22 47 29 43
'SNCAIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S1173.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
SNCAIP MUTATED 16 17 16
SNCAIP WILD-TYPE 82 65 82
'SNCAIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S1174.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
SNCAIP MUTATED 11 27 11
SNCAIP WILD-TYPE 64 102 63
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S1175.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
SNCAIP MUTATED 8 11 11 17 0
SNCAIP WILD-TYPE 31 67 50 68 6
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S1176.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
SNCAIP MUTATED 8 25 9 5
SNCAIP WILD-TYPE 68 83 42 29
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S1177.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
SNCAIP MUTATED 12 13 22
SNCAIP WILD-TYPE 61 72 78
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1178.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
SNCAIP MUTATED 28 14 5
SNCAIP WILD-TYPE 100 90 21
'HLA-DRA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S1179.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
HLA-DRA MUTATED 1 8 3
HLA-DRA WILD-TYPE 72 97 97
'HLA-DRA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S1180.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
HLA-DRA MUTATED 3 6 3
HLA-DRA WILD-TYPE 89 106 71
'HLA-DRA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 1

Table S1181.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
HLA-DRA MUTATED 5 2 0 0
HLA-DRA WILD-TYPE 41 56 26 38
'HLA-DRA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0922 (Fisher's exact test), Q value = 1

Table S1182.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
HLA-DRA MUTATED 3 3 1 0
HLA-DRA WILD-TYPE 24 55 33 49
'HLA-DRA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S1183.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
HLA-DRA MUTATED 3 3 6
HLA-DRA WILD-TYPE 95 79 92
'HLA-DRA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S1184.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
HLA-DRA MUTATED 3 4 5
HLA-DRA WILD-TYPE 72 125 69
'HLA-DRA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S1185.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
HLA-DRA MUTATED 1 5 4 1 0
HLA-DRA WILD-TYPE 38 73 57 84 6
'HLA-DRA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S1186.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
HLA-DRA MUTATED 1 4 5 1
HLA-DRA WILD-TYPE 75 104 46 33
'HLA-DRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1187.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
HLA-DRA MUTATED 3 4 4
HLA-DRA WILD-TYPE 70 81 96
'HLA-DRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0615 (Fisher's exact test), Q value = 1

Table S1188.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
HLA-DRA MUTATED 2 8 1
HLA-DRA WILD-TYPE 126 96 25
'ACTC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00212 (Fisher's exact test), Q value = 1

Table S1189.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
ACTC1 MUTATED 7 8 0
ACTC1 WILD-TYPE 66 97 100

Figure S74.  Get High-res Image Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ACTC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S1190.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
ACTC1 MUTATED 8 6 1
ACTC1 WILD-TYPE 84 106 73
'ACTC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S1191.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ACTC1 MUTATED 5 2 1 2
ACTC1 WILD-TYPE 41 56 25 36
'ACTC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S1192.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ACTC1 MUTATED 3 4 1 2
ACTC1 WILD-TYPE 24 54 33 47
'ACTC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S1193.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
ACTC1 MUTATED 6 6 3
ACTC1 WILD-TYPE 92 76 95
'ACTC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S1194.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
ACTC1 MUTATED 7 7 1
ACTC1 WILD-TYPE 68 122 73
'ACTC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S1195.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
ACTC1 MUTATED 3 7 1 4 0
ACTC1 WILD-TYPE 36 71 60 81 6
'ACTC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S1196.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
ACTC1 MUTATED 5 5 2 3
ACTC1 WILD-TYPE 71 103 49 31
'ACTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S1197.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
ACTC1 MUTATED 3 4 6
ACTC1 WILD-TYPE 70 81 94
'ACTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S1198.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
ACTC1 MUTATED 4 7 2
ACTC1 WILD-TYPE 124 97 24
'ELOVL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S1199.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
ELOVL3 MUTATED 2 3 0
ELOVL3 WILD-TYPE 71 102 100
'ELOVL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S1200.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
ELOVL3 MUTATED 1 3 1
ELOVL3 WILD-TYPE 91 109 73
'ELOVL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S1201.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ELOVL3 MUTATED 0 1 1 1
ELOVL3 WILD-TYPE 46 57 25 37
'ELOVL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1202.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ELOVL3 MUTATED 1 0 1 1
ELOVL3 WILD-TYPE 26 58 33 48
'ELOVL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S1203.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
ELOVL3 MUTATED 3 2 0
ELOVL3 WILD-TYPE 95 80 98
'ELOVL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S1204.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
ELOVL3 MUTATED 2 3 0
ELOVL3 WILD-TYPE 73 126 74
'ELOVL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S1205.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
ELOVL3 MUTATED 1 1 0 3 0
ELOVL3 WILD-TYPE 38 77 61 82 6
'ELOVL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S1206.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
ELOVL3 MUTATED 1 3 0 1
ELOVL3 WILD-TYPE 75 105 51 33
'ELOVL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1207.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
ELOVL3 MUTATED 1 2 2
ELOVL3 WILD-TYPE 72 83 98
'ELOVL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S1208.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
ELOVL3 MUTATED 3 1 1
ELOVL3 WILD-TYPE 125 103 25
'THSD7B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S1209.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
THSD7B MUTATED 27 38 24
THSD7B WILD-TYPE 46 67 76
'THSD7B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S1210.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
THSD7B MUTATED 32 39 18
THSD7B WILD-TYPE 60 73 56
'THSD7B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S1211.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
THSD7B MUTATED 19 16 8 14
THSD7B WILD-TYPE 27 42 18 24
'THSD7B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S1212.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
THSD7B MUTATED 12 17 11 17
THSD7B WILD-TYPE 15 41 23 32
'THSD7B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S1213.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
THSD7B MUTATED 30 31 28
THSD7B WILD-TYPE 68 51 70
'THSD7B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S1214.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
THSD7B MUTATED 21 48 20
THSD7B WILD-TYPE 54 81 54
'THSD7B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S1215.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
THSD7B MUTATED 11 31 14 29 1
THSD7B WILD-TYPE 28 47 47 56 5
'THSD7B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S1216.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
THSD7B MUTATED 24 40 14 8
THSD7B WILD-TYPE 52 68 37 26
'THSD7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S1217.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
THSD7B MUTATED 19 29 35
THSD7B WILD-TYPE 54 56 65
'THSD7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S1218.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
THSD7B MUTATED 44 33 6
THSD7B WILD-TYPE 84 71 20
'SLC27A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S1219.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
SLC27A5 MUTATED 3 4 2
SLC27A5 WILD-TYPE 70 101 98
'SLC27A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S1220.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
SLC27A5 MUTATED 5 2 2
SLC27A5 WILD-TYPE 87 110 72
'SLC27A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1221.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SLC27A5 MUTATED 0 3 0 1
SLC27A5 WILD-TYPE 46 55 26 37
'SLC27A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S1222.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SLC27A5 MUTATED 0 2 0 2
SLC27A5 WILD-TYPE 27 56 34 47
'SLC27A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S1223.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
SLC27A5 MUTATED 4 2 3
SLC27A5 WILD-TYPE 94 80 95
'SLC27A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1224.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
SLC27A5 MUTATED 2 5 2
SLC27A5 WILD-TYPE 73 124 72
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0601 (Fisher's exact test), Q value = 1

Table S1225.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
SLC27A5 MUTATED 3 1 2 1 1
SLC27A5 WILD-TYPE 36 77 59 84 5
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1226.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
SLC27A5 MUTATED 1 4 2 1
SLC27A5 WILD-TYPE 75 104 49 33
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S1227.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
SLC27A5 MUTATED 2 1 5
SLC27A5 WILD-TYPE 71 84 95
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S1228.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
SLC27A5 MUTATED 5 2 1
SLC27A5 WILD-TYPE 123 102 25
'PDE4DIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S1229.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
PDE4DIP MUTATED 8 16 20
PDE4DIP WILD-TYPE 65 89 80
'PDE4DIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0925 (Fisher's exact test), Q value = 1

Table S1230.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
PDE4DIP MUTATED 17 21 6
PDE4DIP WILD-TYPE 75 91 68
'PDE4DIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S1231.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PDE4DIP MUTATED 9 6 5 11
PDE4DIP WILD-TYPE 37 52 21 27
'PDE4DIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S1232.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PDE4DIP MUTATED 8 9 7 7
PDE4DIP WILD-TYPE 19 49 27 42
'PDE4DIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S1233.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
PDE4DIP MUTATED 20 12 12
PDE4DIP WILD-TYPE 78 70 86
'PDE4DIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S1234.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
PDE4DIP MUTATED 14 19 11
PDE4DIP WILD-TYPE 61 110 63
'PDE4DIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S1235.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
PDE4DIP MUTATED 9 9 10 16 0
PDE4DIP WILD-TYPE 30 69 51 69 6
'PDE4DIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S1236.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
PDE4DIP MUTATED 11 20 8 5
PDE4DIP WILD-TYPE 65 88 43 29
'PDE4DIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S1237.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
PDE4DIP MUTATED 11 10 21
PDE4DIP WILD-TYPE 62 75 79
'PDE4DIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1238.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
PDE4DIP MUTATED 23 15 4
PDE4DIP WILD-TYPE 105 89 22
'KANK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S1239.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
KANK3 MUTATED 1 4 3
KANK3 WILD-TYPE 72 101 97
'KANK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S1240.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
KANK3 MUTATED 5 3 0
KANK3 WILD-TYPE 87 109 74
'KANK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S1241.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
KANK3 MUTATED 1 3 0 0
KANK3 WILD-TYPE 45 55 26 38
'KANK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S1242.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
KANK3 MUTATED 1 2 0 1
KANK3 WILD-TYPE 26 56 34 48
'KANK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 1

Table S1243.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
KANK3 MUTATED 6 2 0
KANK3 WILD-TYPE 92 80 98

Figure S75.  Get High-res Image Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KANK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S1244.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
KANK3 MUTATED 4 4 0
KANK3 WILD-TYPE 71 125 74
'KANK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S1245.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
KANK3 MUTATED 2 2 2 2 0
KANK3 WILD-TYPE 37 76 59 83 6
'KANK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1246.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
KANK3 MUTATED 1 4 2 1
KANK3 WILD-TYPE 75 104 49 33
'KANK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0871 (Fisher's exact test), Q value = 1

Table S1247.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
KANK3 MUTATED 3 0 5
KANK3 WILD-TYPE 70 85 95
'KANK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1248.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
KANK3 MUTATED 4 3 1
KANK3 WILD-TYPE 124 101 25
'RUNX1T1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S1249.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
RUNX1T1 MUTATED 5 18 11
RUNX1T1 WILD-TYPE 68 87 89
'RUNX1T1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 1

Table S1250.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
RUNX1T1 MUTATED 15 16 3
RUNX1T1 WILD-TYPE 77 96 71

Figure S76.  Get High-res Image Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RUNX1T1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S1251.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RUNX1T1 MUTATED 7 8 2 3
RUNX1T1 WILD-TYPE 39 50 24 35
'RUNX1T1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1252.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
RUNX1T1 MUTATED 6 6 3 5
RUNX1T1 WILD-TYPE 21 52 31 44
'RUNX1T1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S1253.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
RUNX1T1 MUTATED 12 12 10
RUNX1T1 WILD-TYPE 86 70 88
'RUNX1T1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S1254.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
RUNX1T1 MUTATED 13 14 7
RUNX1T1 WILD-TYPE 62 115 67
'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1255.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
RUNX1T1 MUTATED 4 7 10 13 0
RUNX1T1 WILD-TYPE 35 71 51 72 6
'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S1256.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
RUNX1T1 MUTATED 11 14 7 2
RUNX1T1 WILD-TYPE 65 94 44 32
'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S1257.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
RUNX1T1 MUTATED 9 8 17
RUNX1T1 WILD-TYPE 64 77 83
'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S1258.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
RUNX1T1 MUTATED 20 12 2
RUNX1T1 WILD-TYPE 108 92 24
'WDR12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S1259.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
WDR12 MUTATED 3 6 2
WDR12 WILD-TYPE 70 99 98
'WDR12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S1260.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
WDR12 MUTATED 4 5 2
WDR12 WILD-TYPE 88 107 72
'WDR12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S1261.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
WDR12 MUTATED 3 2 1 4
WDR12 WILD-TYPE 43 56 25 34
'WDR12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S1262.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
WDR12 MUTATED 2 4 0 4
WDR12 WILD-TYPE 25 54 34 45
'WDR12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1263.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
WDR12 MUTATED 4 2 5
WDR12 WILD-TYPE 94 80 93
'WDR12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S1264.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
WDR12 MUTATED 2 3 6
WDR12 WILD-TYPE 73 126 68
'WDR12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S1265.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
WDR12 MUTATED 2 3 3 3 0
WDR12 WILD-TYPE 37 75 58 82 6
'WDR12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S1266.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
WDR12 MUTATED 3 3 4 1
WDR12 WILD-TYPE 73 105 47 33
'WDR12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S1267.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
WDR12 MUTATED 2 4 5
WDR12 WILD-TYPE 71 81 95
'WDR12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1268.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
WDR12 MUTATED 6 4 1
WDR12 WILD-TYPE 122 100 25
'POTEG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.05 (Fisher's exact test), Q value = 1

Table S1269.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
POTEG MUTATED 14 9 8
POTEG WILD-TYPE 59 96 92
'POTEG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 1

Table S1270.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
POTEG MUTATED 17 7 7
POTEG WILD-TYPE 75 105 67

Figure S77.  Get High-res Image Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'POTEG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S1271.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
POTEG MUTATED 3 5 2 7
POTEG WILD-TYPE 43 53 24 31
'POTEG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S1272.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
POTEG MUTATED 2 8 4 3
POTEG WILD-TYPE 25 50 30 46
'POTEG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S1273.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
POTEG MUTATED 13 6 12
POTEG WILD-TYPE 85 76 86
'POTEG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S1274.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
POTEG MUTATED 13 10 8
POTEG WILD-TYPE 62 119 66
'POTEG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S1275.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
POTEG MUTATED 2 11 4 13 0
POTEG WILD-TYPE 37 67 57 72 6
'POTEG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S1276.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
POTEG MUTATED 9 15 4 2
POTEG WILD-TYPE 67 93 47 32
'POTEG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S1277.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
POTEG MUTATED 7 8 14
POTEG WILD-TYPE 66 77 86
'POTEG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S1278.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
POTEG MUTATED 17 10 2
POTEG WILD-TYPE 111 94 24
'ITPR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S1279.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
ITPR2 MUTATED 4 9 3
ITPR2 WILD-TYPE 69 96 97
'ITPR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S1280.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
ITPR2 MUTATED 7 7 2
ITPR2 WILD-TYPE 85 105 72
'ITPR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1281.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ITPR2 MUTATED 2 3 1 1
ITPR2 WILD-TYPE 44 55 25 37
'ITPR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S1282.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ITPR2 MUTATED 0 3 2 2
ITPR2 WILD-TYPE 27 55 32 47
'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1283.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
ITPR2 MUTATED 5 7 4
ITPR2 WILD-TYPE 93 75 94
'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S1284.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
ITPR2 MUTATED 5 8 3
ITPR2 WILD-TYPE 70 121 71
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S1285.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
ITPR2 MUTATED 3 5 4 2 1
ITPR2 WILD-TYPE 36 73 57 83 5
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S1286.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
ITPR2 MUTATED 3 6 4 2
ITPR2 WILD-TYPE 73 102 47 32
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S1287.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
ITPR2 MUTATED 6 2 6
ITPR2 WILD-TYPE 67 83 94
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1288.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
ITPR2 MUTATED 7 6 1
ITPR2 WILD-TYPE 121 98 25
'CRNKL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1289.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
CRNKL1 MUTATED 3 5 5
CRNKL1 WILD-TYPE 70 100 95
'CRNKL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0635 (Fisher's exact test), Q value = 1

Table S1290.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
CRNKL1 MUTATED 8 2 3
CRNKL1 WILD-TYPE 84 110 71
'CRNKL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1291.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CRNKL1 MUTATED 4 3 0 2
CRNKL1 WILD-TYPE 42 55 26 36
'CRNKL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S1292.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CRNKL1 MUTATED 2 5 1 1
CRNKL1 WILD-TYPE 25 53 33 48
'CRNKL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S1293.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
CRNKL1 MUTATED 5 3 5
CRNKL1 WILD-TYPE 93 79 93
'CRNKL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S1294.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
CRNKL1 MUTATED 3 5 5
CRNKL1 WILD-TYPE 72 124 69
'CRNKL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 1

Table S1295.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
CRNKL1 MUTATED 3 2 6 1 1
CRNKL1 WILD-TYPE 36 76 55 84 5

Figure S78.  Get High-res Image Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CRNKL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S1296.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
CRNKL1 MUTATED 2 4 4 3
CRNKL1 WILD-TYPE 74 104 47 31
'CRNKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S1297.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
CRNKL1 MUTATED 3 3 7
CRNKL1 WILD-TYPE 70 82 93
'CRNKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S1298.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
CRNKL1 MUTATED 6 4 3
CRNKL1 WILD-TYPE 122 100 23
'DSP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0489 (Fisher's exact test), Q value = 1

Table S1299.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
DSP MUTATED 23 21 16
DSP WILD-TYPE 50 84 84

Figure S79.  Get High-res Image Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DSP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S1300.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
DSP MUTATED 25 20 15
DSP WILD-TYPE 67 92 59
'DSP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S1301.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DSP MUTATED 8 14 4 14
DSP WILD-TYPE 38 44 22 24
'DSP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S1302.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DSP MUTATED 7 13 7 13
DSP WILD-TYPE 20 45 27 36
'DSP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S1303.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
DSP MUTATED 21 23 16
DSP WILD-TYPE 77 59 82
'DSP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S1304.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
DSP MUTATED 18 29 13
DSP WILD-TYPE 57 100 61
'DSP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1305.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
DSP MUTATED 9 13 17 19 0
DSP WILD-TYPE 30 65 44 66 6
'DSP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1306.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
DSP MUTATED 16 27 9 6
DSP WILD-TYPE 60 81 42 28
'DSP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1307.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
DSP MUTATED 17 15 26
DSP WILD-TYPE 56 70 74
'DSP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.092 (Fisher's exact test), Q value = 1

Table S1308.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
DSP MUTATED 36 17 5
DSP WILD-TYPE 92 87 21
'SF3B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S1309.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
SF3B1 MUTATED 5 6 3
SF3B1 WILD-TYPE 68 99 97
'SF3B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S1310.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
SF3B1 MUTATED 7 4 3
SF3B1 WILD-TYPE 85 108 71
'SF3B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 1

Table S1311.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SF3B1 MUTATED 0 3 3 5
SF3B1 WILD-TYPE 46 55 23 33

Figure S80.  Get High-res Image Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SF3B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S1312.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SF3B1 MUTATED 0 5 3 3
SF3B1 WILD-TYPE 27 53 31 46
'SF3B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 1

Table S1313.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
SF3B1 MUTATED 6 7 1
SF3B1 WILD-TYPE 92 75 97

Figure S81.  Get High-res Image Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SF3B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 1

Table S1314.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
SF3B1 MUTATED 5 9 0
SF3B1 WILD-TYPE 70 120 74

Figure S82.  Get High-res Image Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SF3B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 1

Table S1315.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
SF3B1 MUTATED 2 0 3 9 0
SF3B1 WILD-TYPE 37 78 58 76 6

Figure S83.  Get High-res Image Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SF3B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S1316.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
SF3B1 MUTATED 4 9 0 1
SF3B1 WILD-TYPE 72 99 51 33
'SF3B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00606 (Fisher's exact test), Q value = 1

Table S1317.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
SF3B1 MUTATED 5 0 9
SF3B1 WILD-TYPE 68 85 91

Figure S84.  Get High-res Image Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SF3B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00033 (Fisher's exact test), Q value = 0.48

Table S1318.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
SF3B1 MUTATED 14 0 0
SF3B1 WILD-TYPE 114 104 26

Figure S85.  Get High-res Image Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CAGE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S1319.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
CAGE1 MUTATED 4 3 4
CAGE1 WILD-TYPE 69 102 96
'CAGE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S1320.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
CAGE1 MUTATED 4 5 2
CAGE1 WILD-TYPE 88 107 72
'CAGE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S1321.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CAGE1 MUTATED 3 2 2 2
CAGE1 WILD-TYPE 43 56 24 36
'CAGE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0587 (Fisher's exact test), Q value = 1

Table S1322.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CAGE1 MUTATED 2 0 3 4
CAGE1 WILD-TYPE 25 58 31 45
'CAGE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S1323.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
CAGE1 MUTATED 4 4 3
CAGE1 WILD-TYPE 94 78 95
'CAGE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S1324.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
CAGE1 MUTATED 4 4 3
CAGE1 WILD-TYPE 71 125 71
'CAGE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S1325.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
CAGE1 MUTATED 0 4 5 2 0
CAGE1 WILD-TYPE 39 74 56 83 6
'CAGE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S1326.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
CAGE1 MUTATED 4 5 2 0
CAGE1 WILD-TYPE 72 103 49 34
'CAGE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S1327.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
CAGE1 MUTATED 3 2 6
CAGE1 WILD-TYPE 70 83 94
'CAGE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1328.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
CAGE1 MUTATED 6 5 0
CAGE1 WILD-TYPE 122 99 26
'DDX43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S1329.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
DDX43 MUTATED 3 7 1
DDX43 WILD-TYPE 70 98 99
'DDX43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S1330.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
DDX43 MUTATED 1 7 3
DDX43 WILD-TYPE 91 105 71
'DDX43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1331.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DDX43 MUTATED 3 3 0 1
DDX43 WILD-TYPE 43 55 26 37
'DDX43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1332.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DDX43 MUTATED 1 3 1 2
DDX43 WILD-TYPE 26 55 33 47
'DDX43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S1333.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
DDX43 MUTATED 3 6 2
DDX43 WILD-TYPE 95 76 96
'DDX43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S1334.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
DDX43 MUTATED 3 7 1
DDX43 WILD-TYPE 72 122 73
'DDX43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S1335.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
DDX43 MUTATED 2 3 2 4 0
DDX43 WILD-TYPE 37 75 59 81 6
'DDX43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1336.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
DDX43 MUTATED 3 5 2 1
DDX43 WILD-TYPE 73 103 49 33
'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1337.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
DDX43 MUTATED 4 2 5
DDX43 WILD-TYPE 69 83 95
'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1338.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
DDX43 MUTATED 6 4 1
DDX43 WILD-TYPE 122 100 25
'CYP3A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S1339.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
CYP3A7 MUTATED 6 11 8
CYP3A7 WILD-TYPE 67 94 92
'CYP3A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S1340.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
CYP3A7 MUTATED 8 13 4
CYP3A7 WILD-TYPE 84 99 70
'CYP3A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S1341.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CYP3A7 MUTATED 5 3 2 5
CYP3A7 WILD-TYPE 41 55 24 33
'CYP3A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S1342.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CYP3A7 MUTATED 3 4 3 5
CYP3A7 WILD-TYPE 24 54 31 44
'CYP3A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 1

Table S1343.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
CYP3A7 MUTATED 11 10 4
CYP3A7 WILD-TYPE 87 72 94
'CYP3A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S1344.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
CYP3A7 MUTATED 7 14 4
CYP3A7 WILD-TYPE 68 115 70
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S1345.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
CYP3A7 MUTATED 1 6 7 10 0
CYP3A7 WILD-TYPE 38 72 54 75 6
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S1346.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
CYP3A7 MUTATED 10 9 4 1
CYP3A7 WILD-TYPE 66 99 47 33
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 1

Table S1347.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
CYP3A7 MUTATED 13 4 6
CYP3A7 WILD-TYPE 60 81 94

Figure S86.  Get High-res Image Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S1348.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
CYP3A7 MUTATED 13 10 0
CYP3A7 WILD-TYPE 115 94 26
'VGLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1349.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
VGLL1 MUTATED 1 4 1
VGLL1 WILD-TYPE 72 101 99
'VGLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1350.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
VGLL1 MUTATED 1 3 2
VGLL1 WILD-TYPE 91 109 72
'VGLL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1351.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
VGLL1 MUTATED 1 2 0 1
VGLL1 WILD-TYPE 45 56 26 37
'VGLL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1352.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
VGLL1 MUTATED 1 2 0 1
VGLL1 WILD-TYPE 26 56 34 48
'VGLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1353.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
VGLL1 MUTATED 1 2 3
VGLL1 WILD-TYPE 97 80 95
'VGLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S1354.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
VGLL1 MUTATED 1 3 2
VGLL1 WILD-TYPE 74 126 72
'VGLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S1355.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
VGLL1 MUTATED 0 3 2 0 0
VGLL1 WILD-TYPE 39 75 59 85 6
'VGLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S1356.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
VGLL1 MUTATED 1 2 2 0
VGLL1 WILD-TYPE 75 106 49 34
'VGLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S1357.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
VGLL1 MUTATED 2 2 1
VGLL1 WILD-TYPE 71 83 99
'VGLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S1358.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
VGLL1 MUTATED 1 4 0
VGLL1 WILD-TYPE 127 100 26
'GML MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 1

Table S1359.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
GML MUTATED 6 2 2
GML WILD-TYPE 67 103 98
'GML MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1360.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
GML MUTATED 2 4 4
GML WILD-TYPE 90 108 70
'GML MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S1361.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
GML MUTATED 1 3 1 1
GML WILD-TYPE 45 55 25 37
'GML MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S1362.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
GML MUTATED 0 2 0 4
GML WILD-TYPE 27 56 34 45
'GML MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S1363.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
GML MUTATED 4 2 4
GML WILD-TYPE 94 80 94
'GML MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S1364.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
GML MUTATED 3 4 3
GML WILD-TYPE 72 125 71
'GML MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1365.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
GML MUTATED 0 2 2 6 0
GML WILD-TYPE 39 76 59 79 6
'GML MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1366.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
GML MUTATED 4 4 2 0
GML WILD-TYPE 72 104 49 34
'GML MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S1367.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
GML MUTATED 5 2 3
GML WILD-TYPE 68 83 97
'GML MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S1368.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
GML MUTATED 7 3 0
GML WILD-TYPE 121 101 26
'GZMA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S1369.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
GZMA MUTATED 2 5 4
GZMA WILD-TYPE 71 100 96
'GZMA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S1370.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
GZMA MUTATED 6 4 1
GZMA WILD-TYPE 86 108 73
'GZMA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S1371.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
GZMA MUTATED 4 2 1 2
GZMA WILD-TYPE 42 56 25 36
'GZMA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S1372.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
GZMA MUTATED 1 3 3 2
GZMA WILD-TYPE 26 55 31 47
'GZMA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S1373.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
GZMA MUTATED 4 4 3
GZMA WILD-TYPE 94 78 95
'GZMA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S1374.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
GZMA MUTATED 4 5 2
GZMA WILD-TYPE 71 124 72
'GZMA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S1375.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
GZMA MUTATED 1 2 2 5 1
GZMA WILD-TYPE 38 76 59 80 5
'GZMA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1376.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
GZMA MUTATED 3 5 2 1
GZMA WILD-TYPE 73 103 49 33
'GZMA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 1

Table S1377.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
GZMA MUTATED 2 1 8
GZMA WILD-TYPE 71 84 92
'GZMA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S1378.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
GZMA MUTATED 7 3 1
GZMA WILD-TYPE 121 101 25
'NPTX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S1379.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
NPTX1 MUTATED 3 2 3
NPTX1 WILD-TYPE 70 103 97
'NPTX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S1380.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
NPTX1 MUTATED 5 2 1
NPTX1 WILD-TYPE 87 110 73
'NPTX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S1381.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NPTX1 MUTATED 0 1 1 2
NPTX1 WILD-TYPE 46 57 25 36
'NPTX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S1382.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NPTX1 MUTATED 0 2 0 2
NPTX1 WILD-TYPE 27 56 34 47
'NPTX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0794 (Fisher's exact test), Q value = 1

Table S1383.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
NPTX1 MUTATED 4 4 0
NPTX1 WILD-TYPE 94 78 98
'NPTX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S1384.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
NPTX1 MUTATED 4 4 0
NPTX1 WILD-TYPE 71 125 74
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S1385.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
NPTX1 MUTATED 0 1 4 3 0
NPTX1 WILD-TYPE 39 77 57 82 6
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S1386.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
NPTX1 MUTATED 1 6 1 0
NPTX1 WILD-TYPE 75 102 50 34
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 1

Table S1387.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
NPTX1 MUTATED 4 0 4
NPTX1 WILD-TYPE 69 85 96
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S1388.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
NPTX1 MUTATED 6 2 0
NPTX1 WILD-TYPE 122 102 26
'DACT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0798 (Fisher's exact test), Q value = 1

Table S1389.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
DACT1 MUTATED 1 9 3
DACT1 WILD-TYPE 72 96 97
'DACT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S1390.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
DACT1 MUTATED 3 6 4
DACT1 WILD-TYPE 89 106 70
'DACT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S1391.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DACT1 MUTATED 4 1 0 1
DACT1 WILD-TYPE 42 57 26 37
'DACT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S1392.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DACT1 MUTATED 1 3 0 2
DACT1 WILD-TYPE 26 55 34 47
'DACT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S1393.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
DACT1 MUTATED 3 7 3
DACT1 WILD-TYPE 95 75 95
'DACT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S1394.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
DACT1 MUTATED 4 7 2
DACT1 WILD-TYPE 71 122 72
'DACT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S1395.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
DACT1 MUTATED 1 4 2 4 0
DACT1 WILD-TYPE 38 74 59 81 6
'DACT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1396.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
DACT1 MUTATED 3 5 2 1
DACT1 WILD-TYPE 73 103 49 33
'DACT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S1397.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
DACT1 MUTATED 6 3 2
DACT1 WILD-TYPE 67 82 98
'DACT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S1398.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
DACT1 MUTATED 5 6 0
DACT1 WILD-TYPE 123 98 26
'STK19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S1399.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
STK19 MUTATED 5 5 3
STK19 WILD-TYPE 68 100 97
'STK19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0452 (Fisher's exact test), Q value = 1

Table S1400.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
STK19 MUTATED 5 8 0
STK19 WILD-TYPE 87 104 74

Figure S87.  Get High-res Image Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STK19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S1401.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
STK19 MUTATED 2 0 2 2
STK19 WILD-TYPE 44 58 24 36
'STK19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S1402.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
STK19 MUTATED 0 3 1 2
STK19 WILD-TYPE 27 55 33 47
'STK19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S1403.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
STK19 MUTATED 5 5 3
STK19 WILD-TYPE 93 77 95
'STK19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S1404.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
STK19 MUTATED 2 9 2
STK19 WILD-TYPE 73 120 72
'STK19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S1405.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
STK19 MUTATED 0 2 4 6 0
STK19 WILD-TYPE 39 76 57 79 6
'STK19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S1406.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
STK19 MUTATED 3 6 3 0
STK19 WILD-TYPE 73 102 48 34
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S1407.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
STK19 MUTATED 3 3 6
STK19 WILD-TYPE 70 82 94
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S1408.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
STK19 MUTATED 8 4 0
STK19 WILD-TYPE 120 100 26
'STK31 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S1409.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
STK31 MUTATED 9 17 10
STK31 WILD-TYPE 64 88 90
'STK31 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 1

Table S1410.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
STK31 MUTATED 12 20 4
STK31 WILD-TYPE 80 92 70

Figure S88.  Get High-res Image Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STK31 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S1411.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
STK31 MUTATED 6 8 2 9
STK31 WILD-TYPE 40 50 24 29
'STK31 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S1412.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
STK31 MUTATED 4 11 5 5
STK31 WILD-TYPE 23 47 29 44
'STK31 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 6e-04 (Fisher's exact test), Q value = 0.88

Table S1413.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
STK31 MUTATED 13 19 4
STK31 WILD-TYPE 85 63 94

Figure S89.  Get High-res Image Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'STK31 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.002 (Fisher's exact test), Q value = 1

Table S1414.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
STK31 MUTATED 7 26 3
STK31 WILD-TYPE 68 103 71

Figure S90.  Get High-res Image Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'STK31 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S1415.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
STK31 MUTATED 5 8 9 12 0
STK31 WILD-TYPE 34 70 52 73 6
'STK31 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S1416.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
STK31 MUTATED 11 14 5 4
STK31 WILD-TYPE 65 94 46 30
'STK31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S1417.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
STK31 MUTATED 14 7 11
STK31 WILD-TYPE 59 78 89
'STK31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S1418.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
STK31 MUTATED 19 11 2
STK31 WILD-TYPE 109 93 24
'ROS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S1419.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
ROS1 MUTATED 21 19 17
ROS1 WILD-TYPE 52 86 83
'ROS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 1

Table S1420.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
ROS1 MUTATED 27 22 8
ROS1 WILD-TYPE 65 90 66

Figure S91.  Get High-res Image Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ROS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1421.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ROS1 MUTATED 10 9 6 7
ROS1 WILD-TYPE 36 49 20 31
'ROS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S1422.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ROS1 MUTATED 6 9 8 9
ROS1 WILD-TYPE 21 49 26 40
'ROS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1423.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
ROS1 MUTATED 20 17 20
ROS1 WILD-TYPE 78 65 78
'ROS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1424.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
ROS1 MUTATED 17 25 15
ROS1 WILD-TYPE 58 104 59
'ROS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0679 (Fisher's exact test), Q value = 1

Table S1425.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
ROS1 MUTATED 13 10 9 20 1
ROS1 WILD-TYPE 26 68 52 65 5
'ROS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0424 (Fisher's exact test), Q value = 1

Table S1426.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
ROS1 MUTATED 10 27 6 10
ROS1 WILD-TYPE 66 81 45 24

Figure S92.  Get High-res Image Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ROS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S1427.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
ROS1 MUTATED 15 12 24
ROS1 WILD-TYPE 58 73 76
'ROS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0688 (Fisher's exact test), Q value = 1

Table S1428.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
ROS1 MUTATED 29 14 8
ROS1 WILD-TYPE 99 90 18
'KCNB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S1429.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
KCNB2 MUTATED 13 28 18
KCNB2 WILD-TYPE 60 77 82
'KCNB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 1

Table S1430.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
KCNB2 MUTATED 25 26 8
KCNB2 WILD-TYPE 67 86 66

Figure S93.  Get High-res Image Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1431.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
KCNB2 MUTATED 13 10 10 8
KCNB2 WILD-TYPE 33 48 16 30
'KCNB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1432.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
KCNB2 MUTATED 9 11 8 13
KCNB2 WILD-TYPE 18 47 26 36
'KCNB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S1433.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
KCNB2 MUTATED 24 19 16
KCNB2 WILD-TYPE 74 63 82
'KCNB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S1434.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
KCNB2 MUTATED 16 30 13
KCNB2 WILD-TYPE 59 99 61
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S1435.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
KCNB2 MUTATED 11 15 15 16 0
KCNB2 WILD-TYPE 28 63 46 69 6
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S1436.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
KCNB2 MUTATED 13 25 9 10
KCNB2 WILD-TYPE 63 83 42 24
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1437.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
KCNB2 MUTATED 18 17 21
KCNB2 WILD-TYPE 55 68 79
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S1438.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
KCNB2 MUTATED 31 18 7
KCNB2 WILD-TYPE 97 86 19
'ART3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S1439.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
ART3 MUTATED 3 6 3
ART3 WILD-TYPE 70 99 97
'ART3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S1440.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
ART3 MUTATED 5 6 1
ART3 WILD-TYPE 87 106 73
'ART3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S1441.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ART3 MUTATED 2 3 2 1
ART3 WILD-TYPE 44 55 24 37
'ART3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S1442.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ART3 MUTATED 0 2 1 5
ART3 WILD-TYPE 27 56 33 44
'ART3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S1443.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
ART3 MUTATED 3 5 4
ART3 WILD-TYPE 95 77 94
'ART3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1444.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
ART3 MUTATED 3 6 3
ART3 WILD-TYPE 72 123 71
'ART3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S1445.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
ART3 MUTATED 2 3 2 3 1
ART3 WILD-TYPE 37 75 59 82 5
'ART3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1446.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
ART3 MUTATED 2 6 2 1
ART3 WILD-TYPE 74 102 49 33
'ART3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1447.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
ART3 MUTATED 5 2 4
ART3 WILD-TYPE 68 83 96
'ART3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S1448.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
ART3 MUTATED 5 5 1
ART3 WILD-TYPE 123 99 25
'CLDN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1449.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
CLDN4 MUTATED 4 4 3
CLDN4 WILD-TYPE 69 101 97
'CLDN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S1450.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
CLDN4 MUTATED 5 4 2
CLDN4 WILD-TYPE 87 108 72
'CLDN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S1451.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CLDN4 MUTATED 2 1 0 2
CLDN4 WILD-TYPE 44 57 26 36
'CLDN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S1452.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CLDN4 MUTATED 1 1 2 1
CLDN4 WILD-TYPE 26 57 32 48
'CLDN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S1453.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
CLDN4 MUTATED 3 4 4
CLDN4 WILD-TYPE 95 78 94
'CLDN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S1454.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
CLDN4 MUTATED 3 4 4
CLDN4 WILD-TYPE 72 125 70
'CLDN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S1455.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
CLDN4 MUTATED 1 4 3 2 0
CLDN4 WILD-TYPE 38 74 58 83 6
'CLDN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S1456.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
CLDN4 MUTATED 1 5 3 1
CLDN4 WILD-TYPE 75 103 48 33
'CLDN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S1457.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
CLDN4 MUTATED 3 2 5
CLDN4 WILD-TYPE 70 83 95
'CLDN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1458.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
CLDN4 MUTATED 5 4 1
CLDN4 WILD-TYPE 123 100 25
'RAG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S1459.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 105 100
RAG2 MUTATED 5 9 4
RAG2 WILD-TYPE 68 96 96
'RAG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S1460.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 92 112 74
RAG2 MUTATED 6 9 3
RAG2 WILD-TYPE 86 103 71
'RAG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S1461.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RAG2 MUTATED 6 6 0 2
RAG2 WILD-TYPE 40 52 26 36
'RAG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S1462.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
RAG2 MUTATED 4 6 2 2
RAG2 WILD-TYPE 23 52 32 47
'RAG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S1463.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 82 98
RAG2 MUTATED 3 6 9
RAG2 WILD-TYPE 95 76 89
'RAG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1464.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 129 74
RAG2 MUTATED 3 8 7
RAG2 WILD-TYPE 72 121 67
'RAG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S1465.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 78 61 85 6
RAG2 MUTATED 2 8 4 4 0
RAG2 WILD-TYPE 37 70 57 81 6
'RAG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S1466.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 76 108 51 34
RAG2 MUTATED 6 6 4 2
RAG2 WILD-TYPE 70 102 47 32
'RAG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S1467.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 85 100
RAG2 MUTATED 4 9 4
RAG2 WILD-TYPE 69 76 96
'RAG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S1468.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 128 104 26
RAG2 MUTATED 6 9 2
RAG2 WILD-TYPE 122 95 24
Methods & Data
Input

  • Mutation data file = transformed.cor.cli.txt

  • Molecular subtypes file = SKCM-TM.transferedmergedcluster.txt

  • Number of patients = 278

  • Number of significantly mutated genes = 147

  • Number of Molecular subtypes = 10

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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