		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	87 (24%)	279	0.13403	1	0.12589	1	0.7975	1	0.97821	1	0.87116	1	0.75137	1	0.5692	1	0.92313	1	0.80141	1	0.49455	1
1q gain	171 (47%)	195	9.9999e-06	0.00796	0.59155	1	0.27049	1	0.50998	1	0.01757	1	0.13755	1	0.12415	1	0.31628	1	0.04709	1	0.28525	1
2p gain	67 (18%)	299	0.01148	1	0.36716	1	0.80114	1	0.81289	1	0.00162	1	0.00418	1	0.10468	1	0.00012	0.093	0.03844	1	0.0277	1
2q gain	65 (18%)	301	0.0081799	1	0.46489	1	0.77486	1	0.34411	1	2e-04	0.154	0.00209	1	0.13788	1	4e-05	0.0312	0.052589	1	0.00236	1
3p gain	63 (17%)	303	0.21973	1	0.22381	1	0.04514	1	0.02091	1	0.4274	1	0.73206	1	0.33316	1	0.55809	1	0.75457	1	0.97604	1
3q gain	72 (20%)	294	0.5634	1	0.4146	1	0.01867	1	0.04548	1	0.04861	1	0.39585	1	0.13502	1	0.52924	1	0.20134	1	0.61775	1
4p gain	56 (15%)	310	0.00201	1	0.25288	1	0.30506	1	0.8574	1	0.56933	1	0.56314	1	0.30344	1	0.04613	1	0.72863	1	0.56372	1
4q gain	47 (13%)	319	0.01176	1	0.29021	1	0.26391	1	0.93529	1	0.26574	1	0.74737	1	0.68915	1	0.04188	1	0.77305	1	0.94271	1
5p gain	76 (21%)	290	0.00054999	0.419	0.12922	1	0.89034	1	0.39722	1	0.17211	1	0.28368	1	0.087469	1	0.49874	1	0.98445	1	0.097299	1
5q gain	52 (14%)	314	0.01052	1	0.12865	1	0.35987	1	0.13841	1	0.96471	1	1	1	0.10312	1	0.52191	1	0.33374	1	0.071409	1
6p gain	144 (39%)	222	0.00052999	0.404	5.9999e-05	0.0466	0.98794	1	0.14374	1	0.22298	1	0.15212	1	0.0021	1	0.057309	1	0.00041	0.314	0.00169	1
6q gain	48 (13%)	318	0.3091	1	0.4916	1	0.85897	1	0.33098	1	0.92383	1	0.5068	1	0.35623	1	0.40405	1	0.83524	1	0.64407	1
7p gain	203 (55%)	163	9.9999e-06	0.00796	0.90961	1	0.46058	1	0.37347	1	0.02365	1	0.10353	1	0.074039	1	0.73838	1	0.17375	1	0.56939	1
7q gain	200 (55%)	166	3e-05	0.0234	0.87709	1	0.69333	1	0.51874	1	0.0088599	1	0.04884	1	0.68466	1	0.56981	1	0.0088899	1	0.3005	1
8p gain	121 (33%)	245	9.9999e-06	0.00796	0.2248	1	0.61091	1	0.84202	1	0.01692	1	0.01338	1	0.52322	1	0.84365	1	0.8524	1	0.44028	1
8q gain	169 (46%)	197	9.9999e-06	0.00796	0.00212	1	0.69457	1	0.79685	1	0.00414	1	0.0434	1	0.62632	1	0.89119	1	0.80704	1	0.37543	1
9p gain	16 (4%)	350	0.3064	1	0.20261	1	0.37682	1	0.8365	1	0.34397	1	0.54723	1	0.90321	1	0.60795	1	0.12794	1	0.262	1
9q gain	21 (6%)	345	0.66449	1	0.65629	1	0.13522	1	0.92914	1	0.53671	1	0.29539	1	0.88609	1	0.41735	1	0.48007	1	0.55332	1
10p gain	12 (3%)	354	0.4989	1	0.93201	1	0.86614	1	0.54824	1	0.70481	1	0.92988	1	0.26045	1	0.55737	1	1	1	0.90587	1
10q gain	3 (1%)	363	0.37765	1	0.359	1	NA	NA	NA	NA	0.63079	1	1	1	0.77743	1	0.72053	1	0.26882	1	0.69065	1
11p gain	35 (10%)	331	0.0063399	1	0.087389	1	0.086489	1	0.18676	1	0.00185	1	0.053979	1	0.02404	1	0.0062799	1	0.23012	1	0.01802	1
11q gain	29 (8%)	337	0.00021	0.161	0.1647	1	0.075769	1	0.087239	1	0.01195	1	0.02178	1	0.0061199	1	0.00081999	0.619	0.056799	1	0.01327	1
12p gain	65 (18%)	301	0.00080999	0.612	0.18002	1	0.53845	1	0.4257	1	0.00467	1	0.29538	1	0.87298	1	0.49195	1	0.16484	1	0.36809	1
12q gain	39 (11%)	327	0.01629	1	0.93099	1	0.61792	1	0.057029	1	0.34227	1	0.27445	1	0.81813	1	0.061079	1	0.42155	1	0.6781	1
13q gain	94 (26%)	272	9.9999e-06	0.00796	9.9999e-06	0.00796	0.4587	1	0.31303	1	0.00050999	0.389	0.23051	1	0.49815	1	0.83934	1	0.089569	1	0.68439	1
14q gain	41 (11%)	325	0.39357	1	0.32795	1	0.34825	1	0.1563	1	0.9344	1	0.90794	1	0.51056	1	0.50576	1	0.76432	1	0.96615	1
15q gain	85 (23%)	281	4e-05	0.0312	0.17616	1	0.94484	1	0.81735	1	0.0092199	1	0.0059699	1	0.1919	1	0.17195	1	0.37517	1	0.056499	1
16p gain	58 (16%)	308	0.00162	1	0.01729	1	0.98733	1	0.65822	1	0.00062999	0.478	0.054049	1	0.78167	1	0.074199	1	0.071599	1	0.12291	1
16q gain	44 (12%)	322	0.00028	0.215	0.02279	1	0.27373	1	0.62773	1	9.9999e-06	0.00796	0.0016	1	0.78493	1	0.1013	1	0.054019	1	0.14862	1
17p gain	37 (10%)	329	0.0092399	1	0.00163	1	0.58143	1	0.52836	1	0.11789	1	0.10051	1	0.57012	1	0.29556	1	0.97502	1	0.13917	1
17q gain	65 (18%)	301	0.052089	1	0.055629	1	0.10379	1	0.27582	1	0.8833	1	0.56863	1	0.47695	1	0.6706	1	0.55582	1	0.76426	1
18p gain	55 (15%)	311	0.00216	1	0.61575	1	0.21046	1	0.38719	1	0.20167	1	0.59895	1	0.93313	1	0.9662	1	0.060619	1	0.46913	1
18q gain	44 (12%)	322	0.00073999	0.56	0.70817	1	0.35153	1	0.4666	1	0.30435	1	0.60181	1	0.6751	1	0.76961	1	0.64614	1	0.79629	1
19p gain	57 (16%)	309	0.00489	1	0.04925	1	0.2482	1	0.79916	1	0.00055999	0.426	0.01123	1	0.90777	1	0.5418	1	0.17237	1	0.90061	1
19q gain	56 (15%)	310	0.01122	1	0.04109	1	0.29212	1	1	1	9.9999e-06	0.00796	0.0076699	1	0.52274	1	0.43108	1	0.15371	1	0.85321	1
20p gain	147 (40%)	219	9.9999e-06	0.00796	0.01145	1	0.84285	1	0.98514	1	0.00017	0.131	0.02078	1	0.48665	1	0.26724	1	0.27165	1	0.065919	1
20q gain	179 (49%)	187	9.9999e-06	0.00796	0.01977	1	0.94099	1	0.97394	1	0.00364	1	0.12355	1	0.47799	1	0.25916	1	0.91354	1	0.27995	1
21q gain	67 (18%)	299	0.16518	1	0.052209	1	0.88872	1	0.53084	1	0.25161	1	0.76254	1	0.11001	1	0.99683	1	0.94925	1	0.50845	1
22q gain	126 (34%)	240	0.00033	0.253	0.16571	1	0.89272	1	0.94542	1	0.087509	1	0.1193	1	0.61507	1	0.16065	1	0.70119	1	0.50096	1
xq gain	42 (11%)	324	6.9999e-05	0.0543	0.00036	0.276	0.58432	1	0.98611	1	0.00484	1	0.01549	1	0.43979	1	0.34798	1	0.00019	0.147	0.64689	1
1p loss	53 (14%)	313	0.04908	1	0.00019	0.147	0.58743	1	0.31299	1	0.01409	1	0.004	1	0.0092199	1	0.69285	1	0.17761	1	0.055159	1
1q loss	28 (8%)	338	0.064519	1	0.0225	1	0.96808	1	0.46222	1	0.16349	1	0.092869	1	0.36808	1	0.93856	1	0.28356	1	0.35723	1
2p loss	51 (14%)	315	0.37245	1	0.29163	1	0.04734	1	0.01508	1	0.84467	1	0.26028	1	0.0029	1	0.063299	1	0.22436	1	0.21113	1
2q loss	52 (14%)	314	0.81567	1	0.27776	1	0.01055	1	0.00195	1	0.55613	1	0.18398	1	0.0083499	1	0.11693	1	0.17046	1	0.22557	1
3p loss	61 (17%)	305	0.061049	1	0.85975	1	0.49314	1	0.32779	1	0.22797	1	0.33055	1	0.059959	1	0.65974	1	0.5188	1	0.4082	1
3q loss	53 (14%)	313	0.04736	1	0.079589	1	0.51547	1	0.37417	1	0.26706	1	0.40856	1	0.12579	1	0.63262	1	0.33109	1	0.76822	1
4p loss	80 (22%)	286	0.52774	1	0.17573	1	0.35157	1	0.9687	1	0.10528	1	0.073969	1	0.54375	1	0.0134	1	0.87891	1	0.31771	1
4q loss	85 (23%)	281	0.52901	1	0.063539	1	0.48325	1	0.7492	1	0.13908	1	0.04795	1	0.90272	1	0.0055599	1	0.60374	1	0.24207	1
5p loss	79 (22%)	287	0.85018	1	0.11101	1	0.88161	1	0.86001	1	0.68632	1	0.66823	1	0.51333	1	0.25966	1	0.20672	1	0.38901	1
5q loss	99 (27%)	267	0.59139	1	0.03929	1	0.65116	1	0.36412	1	0.75076	1	0.2502	1	0.90677	1	0.57814	1	0.41844	1	0.60813	1
6p loss	68 (19%)	298	0.0054799	1	0.52581	1	0.87369	1	0.27609	1	0.01059	1	0.02975	1	0.04194	1	0.090569	1	0.0257	1	0.02751	1
6q loss	172 (47%)	194	9.9999e-06	0.00796	0.01854	1	0.97789	1	0.48299	1	0.00412	1	0.03175	1	0.21882	1	0.21503	1	0.40365	1	0.16188	1
7p loss	18 (5%)	348	0.83044	1	0.057179	1	0.095819	1	0.56064	1	0.49543	1	0.9473	1	0.65299	1	0.70949	1	0.16967	1	0.74902	1
7q loss	17 (5%)	349	0.36108	1	0.01037	1	0.33938	1	0.43792	1	0.42508	1	0.48835	1	0.52323	1	0.77142	1	0.095749	1	0.92557	1
8p loss	67 (18%)	299	0.12471	1	0.48592	1	0.058269	1	0.29402	1	0.092849	1	0.95325	1	0.45821	1	0.02967	1	0.43941	1	0.18214	1
8q loss	27 (7%)	339	0.52008	1	0.0084499	1	0.31911	1	0.53652	1	0.27451	1	0.7869	1	0.40845	1	0.50434	1	0.01461	1	0.14743	1
9p loss	236 (64%)	130	0.00013	0.101	0.1057	1	0.64755	1	0.45028	1	0.0055699	1	0.12344	1	0.075869	1	0.21818	1	0.73737	1	0.59044	1
9q loss	185 (51%)	181	0.27236	1	0.054749	1	0.99224	1	0.15	1	0.03847	1	0.80766	1	0.04009	1	0.13759	1	0.96954	1	0.46572	1
10p loss	204 (56%)	162	9.9999e-06	0.00796	0.15132	1	0.92288	1	0.41085	1	0.00094999	0.715	0.0053199	1	0.061339	1	0.34496	1	0.36901	1	0.55989	1
10q loss	224 (61%)	142	9.9999e-06	0.00796	0.2372	1	0.91862	1	0.2007	1	5e-05	0.0389	0.00048	0.367	0.02103	1	0.36471	1	0.33216	1	0.49996	1
11p loss	126 (34%)	240	0.01818	1	0.0474	1	0.58494	1	0.29434	1	0.5858	1	0.61673	1	0.52467	1	0.33731	1	0.084369	1	0.56764	1
11q loss	148 (40%)	218	0.01248	1	0.30946	1	0.95225	1	0.6997	1	0.34892	1	0.41413	1	0.7404	1	0.15735	1	0.075129	1	0.54669	1
12p loss	59 (16%)	307	0.22097	1	0.11524	1	0.85546	1	0.87183	1	0.01862	1	0.623	1	0.12477	1	0.43539	1	0.98202	1	0.5793	1
12q loss	67 (18%)	299	0.03397	1	0.01241	1	0.98252	1	0.87361	1	0.12547	1	0.379	1	0.13346	1	0.50002	1	0.4495	1	0.69605	1
13q loss	80 (22%)	286	0.93704	1	0.01916	1	0.066089	1	0.55971	1	0.56318	1	0.40224	1	0.79971	1	0.2019	1	0.32301	1	0.46982	1
14q loss	112 (31%)	254	2e-05	0.0156	0.44012	1	0.4127	1	0.26818	1	0.0103	1	0.059269	1	0.0052699	1	0.21247	1	0.33492	1	0.23763	1
15q loss	52 (14%)	314	0.18281	1	0.28471	1	0.28564	1	0.061959	1	0.65037	1	0.11759	1	0.64497	1	0.42114	1	0.29043	1	0.45815	1
16p loss	68 (19%)	298	0.20531	1	0.1053	1	0.062879	1	0.36271	1	0.05	1	0.52015	1	0.2335	1	0.19441	1	0.13445	1	0.30199	1
16q loss	106 (29%)	260	0.30255	1	0.34532	1	0.01584	1	0.7563	1	0.01875	1	0.11995	1	0.32725	1	0.10482	1	0.067819	1	0.18437	1
17p loss	127 (35%)	239	0.077209	1	0.0063699	1	0.4459	1	0.51195	1	0.20383	1	0.14577	1	0.87879	1	0.51814	1	0.62219	1	0.44413	1
17q loss	64 (17%)	302	0.14247	1	0.14138	1	0.12945	1	0.5445	1	0.80038	1	0.18385	1	0.50798	1	0.87141	1	0.061429	1	1	1
18p loss	104 (28%)	262	0.73017	1	0.58691	1	0.37652	1	0.51241	1	0.02302	1	0.36647	1	0.02725	1	0.39087	1	0.54487	1	0.15188	1
18q loss	100 (27%)	266	0.44592	1	0.81881	1	0.29582	1	0.48779	1	0.39277	1	0.84712	1	0.75001	1	0.23154	1	0.56074	1	0.17817	1
19p loss	77 (21%)	289	0.072409	1	0.60316	1	0.78434	1	0.03504	1	0.11686	1	0.78581	1	0.57189	1	0.88691	1	0.23808	1	0.51316	1
19q loss	73 (20%)	293	0.02425	1	0.052909	1	0.97865	1	0.082229	1	0.052319	1	0.53806	1	0.48609	1	0.98871	1	0.054669	1	0.52929	1
20p loss	26 (7%)	340	0.36972	1	0.66172	1	0.23619	1	0.77223	1	0.28153	1	0.053779	1	0.13445	1	0.01726	1	0.89028	1	0.1866	1
20q loss	9 (2%)	357	0.3994	1	0.18317	1	NA	NA	NA	NA	0.076269	1	0.0072899	1	0.68544	1	0.55687	1	0.36219	1	0.68555	1
21q loss	70 (19%)	296	0.099629	1	0.31114	1	0.47101	1	0.93032	1	0.80271	1	0.32708	1	0.33486	1	0.74625	1	0.59261	1	0.76826	1
22q loss	39 (11%)	327	0.40261	1	0.40744	1	0.95459	1	0.93981	1	0.17866	1	0.65795	1	0.86672	1	0.70073	1	0.70833	1	0.77275	1
xq loss	94 (26%)	272	0.02756	1	9.9999e-06	0.00796	0.2391	1	0.077079	1	0.00093999	0.709	0.00061999	0.471	0.055409	1	0.68226	1	0.02474	1	0.68677	1
