		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p36.22	66 (15%)	375	9.9999e-06	0.0089	0.03973	1	0.51658	1	0.24403	1	0.00018	0.105	0.11991	1	0.011	1	0.00072999	0.385	0.13304	1	0.0088399	1
amp_1q21.3	160 (36%)	281	9.9999e-06	0.0089	9.9999e-06	0.0089	0.03406	1	0.02784	1	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	0.00019	0.111
amp_1q42.3	150 (34%)	291	9.9999e-06	0.0089	4e-05	0.0257	0.40232	1	0.095369	1	9.9999e-06	0.0089	4e-05	0.0257	9.9999e-06	0.0089	9.9999e-06	0.0089	3e-05	0.0199	0.16138	1
amp_3q26.2	164 (37%)	277	9.9999e-06	0.0089	0.0083099	1	0.85778	1	0.00407	1	0.39964	1	0.0107	1	0.00426	1	0.01678	1	0.0033	1	0.0139	1
amp_5p15.33	130 (29%)	311	9.9999e-06	0.0089	9.9999e-06	0.0089	0.12667	1	0.98474	1	9.9999e-06	0.0089	2e-05	0.0137	9.9999e-06	0.0089	9.9999e-06	0.0089	0.00026	0.148	0.00068999	0.366
amp_5p13.1	126 (29%)	315	9.9999e-06	0.0089	9.9999e-06	0.0089	0.73617	1	0.8615	1	9.9999e-06	0.0089	0.00061999	0.332	4e-05	0.0257	9.9999e-06	0.0089	0.01636	1	0.03032	1
amp_6p21.1	124 (28%)	317	9.9999e-06	0.0089	9.9999e-06	0.0089	0.34923	1	0.23418	1	8.9999e-05	0.0547	0.00011	0.0664	9.9999e-06	0.0089	9.9999e-06	0.0089	7.9999e-05	0.0491	0.00039	0.216
amp_6q12	88 (20%)	353	9.9999e-06	0.0089	9.9999e-06	0.0089	0.067489	1	0.88055	1	6.9999e-05	0.0433	0.00044	0.241	5e-05	0.0317	9.9999e-06	0.0089	2e-05	0.0137	0.01337	1
amp_6q21	82 (19%)	359	9.9999e-06	0.0089	0.00037	0.206	0.38496	1	0.40426	1	0.00154	0.762	0.00169	0.825	9.9999e-06	0.0089	9.9999e-06	0.0089	0.00018	0.105	0.00074999	0.392
amp_7p22.1	229 (52%)	212	9.9999e-06	0.0089	7.9999e-05	0.0491	0.63801	1	0.83129	1	0.00012	0.0722	9.9999e-06	0.0089	0.0043	1	5e-05	0.0317	0.04338	1	0.00215	1
amp_7p11.2	214 (49%)	227	9.9999e-06	0.0089	0.00073999	0.389	0.90465	1	0.85205	1	0.04243	1	4e-04	0.221	0.03167	1	0.0022	1	0.096849	1	0.00273	1
amp_7q21.2	204 (46%)	237	9.9999e-06	0.0089	0.00263	1	0.21495	1	0.77263	1	0.45755	1	2e-05	0.0137	0.02994	1	0.00161	0.792	0.10147	1	0.0084699	1
amp_7q22.1	202 (46%)	239	9.9999e-06	0.0089	0.01696	1	0.22759	1	0.88662	1	0.76672	1	0.0016	0.789	0.10173	1	0.03007	1	0.14508	1	0.01663	1
amp_8p23.1	177 (40%)	264	9.9999e-06	0.0089	0.00022	0.127	0.58427	1	0.60148	1	0.055329	1	0.01775	1	0.14321	1	0.069189	1	0.11965	1	0.054639	1
amp_8q24.21	309 (70%)	132	9.9999e-06	0.0089	0.00056999	0.306	0.38201	1	0.37811	1	0.0052699	1	0.01076	1	2e-05	0.0137	9.9999e-06	0.0089	0.00076999	0.402	0.00456	1
amp_9p24.1	65 (15%)	376	6.9999e-05	0.0433	0.46154	1	0.61225	1	0.21983	1	0.10974	1	0.0054099	1	0.03303	1	0.32962	1	0.056409	1	0.14272	1
amp_9p13.2	91 (21%)	350	0.00044	0.241	0.58735	1	0.37711	1	0.32769	1	0.01554	1	0.26499	1	0.056999	1	0.2957	1	0.00236	1	0.1831	1
amp_9q34.3	122 (28%)	319	3e-05	0.0199	0.17609	1	0.72113	1	0.47037	1	0.04482	1	0.13794	1	0.01096	1	0.33019	1	0.15359	1	0.27528	1
amp_10p11.22	119 (27%)	322	9.9999e-06	0.0089	3e-05	0.0199	0.1453	1	0.52097	1	0.00136	0.68	0.0088599	1	0.00111	0.566	4e-05	0.0257	0.00281	1	0.01787	1
amp_10q22.2	88 (20%)	353	9.9999e-06	0.0089	0.02331	1	0.01966	1	0.20278	1	0.01624	1	0.02247	1	0.25413	1	0.13763	1	0.27798	1	0.28825	1
amp_10q26.13	88 (20%)	353	9.9999e-06	0.0089	0.00392	1	0.03581	1	0.33065	1	0.0056499	1	0.02996	1	0.19913	1	0.20257	1	0.81964	1	0.58571	1
amp_11p13	88 (20%)	353	9.9999e-06	0.0089	0.01684	1	0.64637	1	0.11815	1	0.00071999	0.38	0.0056699	1	4e-05	0.0257	0.00016	0.0944	0.0328	1	0.50219	1
amp_11p11.2	92 (21%)	349	9.9999e-06	0.0089	0.00029	0.165	0.6924	1	0.16837	1	3e-05	0.0199	0.00046	0.251	9.9999e-06	0.0089	9.9999e-06	0.0089	0.00042	0.231	0.00309	1
amp_11q13.3	115 (26%)	326	9.9999e-06	0.0089	0.0095799	1	0.18894	1	0.63827	1	0.12859	1	0.03713	1	3e-05	0.0199	0.00304	1	0.00157	0.776	0.04724	1
amp_12p12.1	128 (29%)	313	9.9999e-06	0.0089	0.0429	1	0.4286	1	0.34748	1	0.20829	1	0.36698	1	0.03677	1	0.13571	1	0.60879	1	0.04118	1
amp_12q15	109 (25%)	332	9.9999e-06	0.0089	0.50151	1	0.21861	1	0.32794	1	0.27696	1	0.074219	1	0.13583	1	0.17087	1	0.053569	1	0.21768	1
amp_13q12.3	170 (39%)	271	9.9999e-06	0.0089	9.9999e-06	0.0089	0.3267	1	0.15176	1	0.01716	1	3e-05	0.0199	5e-05	0.0317	3e-05	0.0199	0.00022	0.127	0.061659	1
amp_13q22.1	181 (41%)	260	9.9999e-06	0.0089	9.9999e-06	0.0089	0.25486	1	0.72462	1	2e-05	0.0137	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	8.9999e-05	0.0547	0.03445	1
amp_15q26.1	113 (26%)	328	9.9999e-06	0.0089	0.00017	0.0998	0.14959	1	0.23692	1	3e-05	0.0199	3e-05	0.0199	0.00049	0.266	0.00046	0.251	0.0082199	1	0.00118	0.596
amp_17q12	147 (33%)	294	9.9999e-06	0.0089	9.9999e-06	0.0089	0.79245	1	0.03954	1	0.00015	0.0888	0.00024	0.137	9.9999e-06	0.0089	5.9999e-05	0.0374	0.00475	1	3e-04	0.169
amp_18q11.2	140 (32%)	301	9.9999e-06	0.0089	0.00038	0.211	0.29034	1	0.28776	1	0.01487	1	0.00385	1	0.00050999	0.275	0.00114	0.578	0.36808	1	0.31465	1
amp_19p13.2	47 (11%)	394	2e-05	0.0137	0.15209	1	0.90248	1	0.75536	1	0.73503	1	0.16148	1	0.47772	1	0.70258	1	0.10517	1	0.41169	1
amp_19q12	130 (29%)	311	9.9999e-06	0.0089	9.9999e-06	0.0089	0.0062399	1	0.11447	1	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	0.04794	1
amp_19q13.32	111 (25%)	330	9.9999e-06	0.0089	0.059139	1	0.38406	1	0.47411	1	0.00142	0.707	0.084479	1	0.00064999	0.346	0.00476	1	0.00227	1	0.0084899	1
amp_20q13.2	293 (66%)	148	9.9999e-06	0.0089	9.9999e-06	0.0089	0.0068099	1	0.01226	1	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	7.9999e-05	0.0491	0.078059	1
amp_xq27.3	86 (20%)	355	3e-05	0.0199	0.0069499	1	0.37279	1	0.94279	1	0.46738	1	7.9999e-05	0.0491	0.053719	1	0.3884	1	0.050989	1	0.01507	1
del_1p36.11	135 (31%)	306	9.9999e-06	0.0089	9.9999e-06	0.0089	0.1595	1	0.00111	0.566	0.00024	0.137	9.9999e-06	0.0089	2e-05	0.0137	2e-05	0.0137	2e-05	0.0137	0.00367	1
del_1p13.2	94 (21%)	347	9.9999e-06	0.0089	9.9999e-06	0.0089	0.079429	1	0.064959	1	0.00111	0.566	0.00089999	0.468	0.00186	0.898	0.0068899	1	0.13929	1	0.01595	1
del_1q44	30 (7%)	411	0.00054999	0.296	0.00094999	0.489	0.17857	1	0.11149	1	0.36469	1	0.02668	1	0.0050099	1	0.14825	1	0.89884	1	0.01662	1
del_1q44	26 (6%)	415	0.00231	1	0.00044	0.241	0.30981	1	0.37539	1	0.742	1	0.33752	1	0.22034	1	0.74823	1	0.40715	1	0.55454	1
del_2q32.1	64 (15%)	377	0.00029	0.165	0.03326	1	0.49021	1	0.082419	1	0.089879	1	0.24088	1	0.01656	1	0.00062999	0.336	0.21921	1	0.090769	1
del_2q33.3	49 (11%)	392	0.00021	0.121	0.02614	1	0.39855	1	0.64499	1	0.17653	1	0.8066	1	0.088799	1	0.0094699	1	0.15497	1	0.089549	1
del_2q37.2	72 (16%)	369	9.9999e-06	0.0089	9.9999e-06	0.0089	0.32674	1	0.24091	1	0.00255	1	0.1739	1	0.00116	0.587	3e-05	0.0199	0.21714	1	0.01676	1
del_3p26.1	143 (32%)	298	9.9999e-06	0.0089	9.9999e-06	0.0089	0.34236	1	0.19342	1	0.0066899	1	5e-05	0.0317	3e-05	0.0199	9.9999e-06	0.0089	0.00013	0.0779	0.0052399	1
del_3p14.2	158 (36%)	283	9.9999e-06	0.0089	2e-05	0.0137	0.40926	1	0.37442	1	0.00015	0.0888	0.00019	0.111	9.9999e-06	0.0089	9.9999e-06	0.0089	0.00485	1	0.00019	0.111
del_3q26.31	47 (11%)	394	9.9999e-06	0.0089	2e-05	0.0137	0.0367	1	0.04814	1	0.00048	0.261	5e-05	0.0317	5e-05	0.0317	0.0050099	1	0.00416	1	0.076019	1
del_4p16.3	169 (38%)	272	9.9999e-06	0.0089	0.00167	0.818	0.45837	1	0.19886	1	9.9999e-06	0.0089	5.9999e-05	0.0374	2e-05	0.0137	9.9999e-06	0.0089	0.00033	0.185	0.01234	1
del_4q22.1	193 (44%)	248	9.9999e-06	0.0089	0.00016	0.0944	0.10839	1	0.26663	1	0.00265	1	5.9999e-05	0.0374	0.00103	0.527	0.00062999	0.336	0.58208	1	0.11792	1
del_4q34.3	200 (45%)	241	9.9999e-06	0.0089	9.9999e-06	0.0089	0.052249	1	0.0086599	1	3e-05	0.0199	2e-05	0.0137	9.9999e-06	0.0089	9.9999e-06	0.0089	0.01191	1	0.085989	1
del_5q12.1	170 (39%)	271	9.9999e-06	0.0089	9.9999e-06	0.0089	0.2337	1	0.1774	1	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	2e-05	0.0137
del_5q23.2	158 (36%)	283	9.9999e-06	0.0089	9.9999e-06	0.0089	0.13534	1	0.076269	1	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089
del_6p25.3	115 (26%)	326	9.9999e-06	0.0089	0.00011	0.0664	0.13774	1	0.82266	1	8.9999e-05	0.0547	3e-05	0.0199	5e-05	0.0317	9.9999e-06	0.0089	0.11147	1	0.04663	1
del_6q14.1	89 (20%)	352	9.9999e-06	0.0089	5e-04	0.27	0.21554	1	0.84218	1	0.00053999	0.291	0.00473	1	0.10097	1	0.00096999	0.498	0.10742	1	0.18814	1
del_6q24.3	78 (18%)	363	9.9999e-06	0.0089	2e-04	0.116	0.8162	1	1	1	0.01404	1	0.02282	1	0.24749	1	0.03044	1	0.01457	1	0.058569	1
del_6q26	102 (23%)	339	9.9999e-06	0.0089	0.00295	1	0.79087	1	0.70246	1	0.00089999	0.468	0.00234	1	0.04065	1	0.0073699	1	0.00298	1	0.00188	0.906
del_7q31.1	71 (16%)	370	9.9999e-06	0.0089	9.9999e-06	0.0089	0.71466	1	0.50049	1	0.0088899	1	0.27873	1	0.00073999	0.389	0.068249	1	0.066239	1	0.12606	1
del_7q36.3	98 (22%)	343	9.9999e-06	0.0089	9.9999e-06	0.0089	0.38285	1	0.077919	1	9.9999e-06	0.0089	0.00033	0.185	9.9999e-06	0.0089	9.9999e-06	0.0089	0.00338	1	0.0087099	1
del_8p23.3	126 (29%)	315	9.9999e-06	0.0089	9.9999e-06	0.0089	0.074639	1	0.5923	1	2e-05	0.0137	9.9999e-06	0.0089	2e-05	0.0137	2e-05	0.0137	0.0088699	1	0.00012	0.0722
del_9p23	195 (44%)	246	9.9999e-06	0.0089	2e-05	0.0137	0.02777	1	0.00091999	0.475	9.9999e-06	0.0089	0.00185	0.895	9.9999e-06	0.0089	0.00013	0.0779	0.15072	1	0.00327	1
del_9p21.3	193 (44%)	248	9.9999e-06	0.0089	9.9999e-06	0.0089	5.9999e-05	0.0374	3e-05	0.0199	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	0.02868	1	0.03069	1
del_9q21.11	114 (26%)	327	9.9999e-06	0.0089	0.00131	0.658	0.1382	1	0.056239	1	0.00148	0.736	0.03631	1	3e-05	0.0199	9.9999e-06	0.0089	0.03789	1	0.10182	1
del_10p12.31	67 (15%)	374	9.9999e-06	0.0089	0.0075999	1	0.20621	1	0.41259	1	0.17286	1	0.49955	1	3e-05	0.0199	0.0017	0.828	0.29273	1	0.20565	1
del_10q22.3	79 (18%)	362	9.9999e-06	0.0089	0.0028	1	0.84682	1	0.087969	1	2e-04	0.116	0.00064999	0.346	4e-05	0.0257	5e-05	0.0317	0.0267	1	0.056149	1
del_10q23.31	116 (26%)	325	9.9999e-06	0.0089	3e-05	0.0199	0.062829	1	0.00012	0.0722	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	0.00224	1	0.050329	1
del_11p15.5	97 (22%)	344	9.9999e-06	0.0089	7.9999e-05	0.0491	4e-05	0.0257	0.0051199	1	0.00362	1	0.03127	1	8.9999e-05	0.0547	0.00174	0.846	0.20778	1	0.53486	1
del_11q23.2	99 (22%)	342	9.9999e-06	0.0089	0.01675	1	0.70413	1	0.15515	1	0.00095999	0.493	0.00013	0.0779	0.19633	1	0.071979	1	0.0293	1	0.19042	1
del_12p13.1	77 (17%)	364	9.9999e-06	0.0089	9.9999e-06	0.0089	0.54015	1	0.41761	1	5.9999e-05	0.0374	3e-05	0.0199	0.00029	0.165	0.00329	1	0.20375	1	0.04989	1
del_12q12	59 (13%)	382	9.9999e-06	0.0089	7.9999e-05	0.0491	0.92127	1	0.93254	1	0.096529	1	0.13996	1	0.30829	1	0.03989	1	0.79556	1	0.69266	1
del_13q12.11	63 (14%)	378	9.9999e-06	0.0089	0.069719	1	0.42732	1	0.3673	1	0.066289	1	0.02097	1	0.075389	1	0.27729	1	0.98811	1	0.37086	1
del_14q23.3	136 (31%)	305	9.9999e-06	0.0089	9.9999e-06	0.0089	0.74944	1	0.42878	1	5e-05	0.0317	0.00027	0.154	9.9999e-06	0.0089	9.9999e-06	0.0089	0.04556	1	0.00262	1
del_14q32.32	133 (30%)	308	9.9999e-06	0.0089	0.00016	0.0944	0.7674	1	0.58957	1	0.00183	0.888	0.00055999	0.301	0.00014	0.083	0.0071399	1	0.25718	1	0.056489	1
del_15q11.2	120 (27%)	321	9.9999e-06	0.0089	9.9999e-06	0.0089	0.00167	0.818	0.26698	1	9.9999e-06	0.0089	2e-05	0.0137	4e-04	0.221	6.9999e-05	0.0433	0.02949	1	0.00036	0.201
del_15q15.1	122 (28%)	319	9.9999e-06	0.0089	9.9999e-06	0.0089	0.00365	1	0.29373	1	9.9999e-06	0.0089	9.9999e-06	0.0089	5e-05	0.0317	9.9999e-06	0.0089	0.0057699	1	0.00017	0.0998
del_16p13.3	93 (21%)	348	9.9999e-06	0.0089	0.00034	0.19	0.70085	1	0.81836	1	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	0.087849	1
del_16q23.1	182 (41%)	259	9.9999e-06	0.0089	0.00233	1	0.46915	1	0.16855	1	0.00195	0.936	0.0085499	1	0.00013	0.0779	0.00363	1	0.0087799	1	0.03223	1
del_17p13.3	176 (40%)	265	9.9999e-06	0.0089	9.9999e-06	0.0089	0.55515	1	0.02029	1	2e-05	0.0137	9.9999e-06	0.0089	9.9999e-06	0.0089	6.9999e-05	0.0433	0.061219	1	0.00246	1
del_17p12	181 (41%)	260	9.9999e-06	0.0089	9.9999e-06	0.0089	0.3958	1	0.0080999	1	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	0.01601	1	0.00013	0.0779
del_17q24.3	76 (17%)	365	9.9999e-06	0.0089	0.00082999	0.432	0.17755	1	0.26494	1	0.01745	1	0.0054499	1	0.0064499	1	0.04151	1	0.23345	1	0.56064	1
del_18q12.2	181 (41%)	260	9.9999e-06	0.0089	0.00132	0.661	0.91313	1	0.73714	1	0.00476	1	0.057599	1	5.9999e-05	0.0374	4e-04	0.221	0.00090999	0.47	0.0080499	1
del_18q21.2	204 (46%)	237	9.9999e-06	0.0089	0.00073999	0.389	0.66493	1	0.45043	1	0.00032	0.18	0.00429	1	5e-05	0.0317	0.00188	0.906	0.00108	0.552	0.0099699	1
del_19p13.3	162 (37%)	279	9.9999e-06	0.0089	9.9999e-06	0.0089	0.00368	1	0.00456	1	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	9.9999e-06	0.0089	3e-05	0.0199
del_19q13.11	75 (17%)	366	9.9999e-06	0.0089	9.9999e-06	0.0089	0.063829	1	0.71061	1	4e-05	0.0257	0.00070999	0.376	9.9999e-06	0.0089	9.9999e-06	0.0089	0.0054099	1	0.0088999	1
del_20p12.1	39 (9%)	402	0.00118	0.596	0.00151	0.749	0.65845	1	0.19358	1	0.015	1	0.084329	1	0.00124	0.624	0.055169	1	0.6625	1	0.04062	1
del_21q11.2	183 (41%)	258	9.9999e-06	0.0089	0.00034	0.19	0.23364	1	0.14697	1	0.00257	1	0.00257	1	3e-05	0.0199	0.00089999	0.468	0.00163	0.8	0.092559	1
del_21q22.3	193 (44%)	248	9.9999e-06	0.0089	0.0090999	1	0.19905	1	0.29364	1	0.0055899	1	0.00037	0.206	0.00022	0.127	0.00294	1	0.00029	0.165	0.092889	1
del_22q13.31	161 (37%)	280	9.9999e-06	0.0089	9.9999e-06	0.0089	0.04981	1	0.0059699	1	0.0014	0.699	0.0039	1	9.9999e-06	0.0089	9.9999e-06	0.0089	0.00013	0.0779	0.01421	1
del_xp22.2	85 (19%)	356	9.9999e-06	0.0089	2e-05	0.0137	0.46313	1	0.04402	1	0.00021	0.121	0.00022	0.127	0.051129	1	0.00271	1	0.34009	1	0.28887	1
del_xp21.1	74 (17%)	367	9.9999e-06	0.0089	0.00299	1	0.16042	1	0.03242	1	0.0078199	1	0.060079	1	0.13073	1	0.24264	1	0.48621	1	0.61852	1
del_xq21.33	56 (13%)	385	9.9999e-06	0.0089	0.00033	0.185	0.81491	1	0.03467	1	0.0087999	1	0.050479	1	0.01318	1	0.063629	1	0.096149	1	0.059139	1
