[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTSTAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/STAD-TP/11724821/STAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/STAD-TP/10687004/transformed.cor.cli.txt"

nPatients in clinical file=443, in cluster file=221, common to both=221
[1] "Reduce the number of clustering variables from 28 to 27."
[1]  27 221
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            99            122 
  TP53 MUTATED TP53 WILD-TYPE 
            99            122 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              48              173 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              48              173 
[1] "CBWD1 MUTATION ANALYSIS"
[1] 3
  CBWD1 MUTATED CBWD1 WILD-TYPE 
             28             193 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
             28             193 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            25            196 
  KRAS MUTATED KRAS WILD-TYPE 
            25            196 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              41              180 
  ARID1A MUTATED ARID1A WILD-TYPE 
              41              180 
[1] "PGM5 MUTATION ANALYSIS"
[1] 3
  PGM5 MUTATED PGM5 WILD-TYPE 
            22            199 
  PGM5 MUTATED PGM5 WILD-TYPE 
            22            199 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
            13            208 
  RHOA MUTATED RHOA WILD-TYPE 
            13            208 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             19             202 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             19             202 
[1] "IRF2 MUTATION ANALYSIS"
[1] 3
  IRF2 MUTATED IRF2 WILD-TYPE 
            14            207 
  IRF2 MUTATED IRF2 WILD-TYPE 
            14            207 
[1] "LARP4B MUTATION ANALYSIS"
[1] 3
  LARP4B MUTATED LARP4B WILD-TYPE 
              12              209 
  LARP4B MUTATED LARP4B WILD-TYPE 
              12              209 
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
           33           188 
  APC MUTATED APC WILD-TYPE 
           33           188 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             19             202 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             19             202 
[1] "CDH1 MUTATION ANALYSIS"
[1] 3
  CDH1 MUTATED CDH1 WILD-TYPE 
            18            203 
  CDH1 MUTATED CDH1 WILD-TYPE 
            18            203 
[1] "HLA-B MUTATION ANALYSIS"
[1] 3
  HLA-B MUTATED HLA-B WILD-TYPE 
             12             209 
  HLA-B MUTATED HLA-B WILD-TYPE 
             12             209 
[1] "BCOR MUTATION ANALYSIS"
[1] 3
  BCOR MUTATED BCOR WILD-TYPE 
            16            205 
  BCOR MUTATED BCOR WILD-TYPE 
            16            205 
[1] "C13ORF33 MUTATION ANALYSIS"
[1] 3
  C13ORF33 MUTATED C13ORF33 WILD-TYPE 
                 6                215 
  C13ORF33 MUTATED C13ORF33 WILD-TYPE 
                 6                215 
[1] "CIC MUTATION ANALYSIS"
[1] 3
  CIC MUTATED CIC WILD-TYPE 
           14           207 
  CIC MUTATED CIC WILD-TYPE 
           14           207 
[1] "ACVR1B MUTATION ANALYSIS"
[1] 3
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              10              211 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              10              211 
[1] "ZBTB20 MUTATION ANALYSIS"
[1] 3
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
              16              205 
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
              16              205 
[1] "MVK MUTATION ANALYSIS"
[1] 3
  MVK MUTATED MVK WILD-TYPE 
            8           213 
  MVK MUTATED MVK WILD-TYPE 
            8           213 
[1] "ERBB2 MUTATION ANALYSIS"
[1] 3
  ERBB2 MUTATED ERBB2 WILD-TYPE 
             11             210 
  ERBB2 MUTATED ERBB2 WILD-TYPE 
             11             210 
[1] "CR1 MUTATION ANALYSIS"
[1] 3
  CR1 MUTATED CR1 WILD-TYPE 
           20           201 
  CR1 MUTATED CR1 WILD-TYPE 
           20           201 
[1] "C1R MUTATION ANALYSIS"
[1] 3
  C1R MUTATED C1R WILD-TYPE 
            3           218 
  C1R MUTATED C1R WILD-TYPE 
            3           218 
[1] "CTNND1 MUTATION ANALYSIS"
[1] 3
  CTNND1 MUTATED CTNND1 WILD-TYPE 
              13              208 
  CTNND1 MUTATED CTNND1 WILD-TYPE 
              13              208 
[1] "MLXIPL MUTATION ANALYSIS"
[1] 3
  MLXIPL MUTATED MLXIPL WILD-TYPE 
              13              208 
  MLXIPL MUTATED MLXIPL WILD-TYPE 
              13              208 
[1] "MLL4 MUTATION ANALYSIS"
[1] 3
  MLL4 MUTATED MLL4 WILD-TYPE 
            20            201 
  MLL4 MUTATED MLL4 WILD-TYPE 
            20            201 
[1] "NLK MUTATION ANALYSIS"
[1] 3
  NLK MUTATED NLK WILD-TYPE 
            5           216 
  NLK MUTATED NLK WILD-TYPE 
            5           216 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 221 columns.

Variable 1:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 221 columns, 0 survival variables, and 10 non-survival variables.
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       41     21     14     18      4
  TP53 WILD-TYPE     16     76      8     17      5
D1V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           41             16
  CLUS_2           21             76
  CLUS_3           14              8
  CLUS_4           18             17
  CLUS_5            4              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       28     35     19
  TP53 WILD-TYPE     40     14     40
D1V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           28             40
  CLUS_2           35             14
  CLUS_3           19             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       33     25     30
  TP53 WILD-TYPE     30     43     37
D1V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           33             30
  CLUS_2           25             43
  CLUS_3           30             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       15     26     20     27
  TP53 WILD-TYPE     14     33     20     43
D1V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           15             14
  CLUS_2           26             33
  CLUS_3           20             20
  CLUS_4           27             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       14     12     12     17     30
  TP53 WILD-TYPE     34     31     19     13     14
D1V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           14             34
  CLUS_2           12             31
  CLUS_3           12             19
  CLUS_4           17             13
  CLUS_5           30             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TP53 MUTATED       15      1      9     16     21     18      5
  TP53 WILD-TYPE     17     14     25     24     11     10     10
D1V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           15             17
  CLUS_2            1             14
  CLUS_3            9             25
  CLUS_4           16             24
  CLUS_5           21             11
  CLUS_6           18             10
  CLUS_7            5             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       43     26     30
  TP53 WILD-TYPE     59     49     14
D1V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           43             59
  CLUS_2           26             49
  CLUS_3           30             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       21     26     16     36
  TP53 WILD-TYPE     20     57     29     16
D1V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           21             20
  CLUS_2           26             57
  CLUS_3           16             29
  CLUS_4           36             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53 MUTATED       12      4     27     14      7     12
  TP53 WILD-TYPE      9      4     30     14      7     17
D1V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           12              9
  CLUS_2            4              4
  CLUS_3           27             30
  CLUS_4           14             14
  CLUS_5            7              7
  CLUS_6           12             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       51     10     15
  TP53 WILD-TYPE     48     27      6
D1V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           51             48
  CLUS_2           10             27
  CLUS_3           15              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        3     31      5      6      3
  PIK3CA WILD-TYPE     54     66     17     29      6
D2V1, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              3               54
  CLUS_2             31               66
  CLUS_3              5               17
  CLUS_4              6               29
  CLUS_5              3                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       27      5     10
  PIK3CA WILD-TYPE     41     44     49
D2V2, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             27               41
  CLUS_2              5               44
  CLUS_3             10               49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       20      8     17
  PIK3CA WILD-TYPE     43     60     50
D2V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             20               43
  CLUS_2              8               60
  CLUS_3             17               50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       10     11     13     11
  PIK3CA WILD-TYPE     19     48     27     59
D2V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             10               19
  CLUS_2             11               48
  CLUS_3             13               27
  CLUS_4             11               59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED       20      8      3      9      4
  PIK3CA WILD-TYPE     28     35     28     21     40
D2V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             20               28
  CLUS_2              8               35
  CLUS_3              3               28
  CLUS_4              9               21
  CLUS_5              4               40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3CA MUTATED        4     12      3     10      7      1      7
  PIK3CA WILD-TYPE     28      3     31     30     25     27      8
D2V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              4               28
  CLUS_2             12                3
  CLUS_3              3               31
  CLUS_4             10               30
  CLUS_5              7               25
  CLUS_6              1               27
  CLUS_7              7                8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       29     14      5
  PIK3CA WILD-TYPE     73     61     39
D2V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             29               73
  CLUS_2             14               61
  CLUS_3              5               39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       12     23      9      4
  PIK3CA WILD-TYPE     29     60     36     48
D2V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             12               29
  CLUS_2             23               60
  CLUS_3              9               36
  CLUS_4              4               48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3CA MUTATED        2      2     21      7      0      3
  PIK3CA WILD-TYPE     19      6     36     21     14     26
D2V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              2               19
  CLUS_2              2                6
  CLUS_3             21               36
  CLUS_4              7               21
  CLUS_5              0               14
  CLUS_6              3               26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       25      5      5
  PIK3CA WILD-TYPE     74     32     16
D2V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             25               74
  CLUS_2              5               32
  CLUS_3              5               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = CBWD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBWD1 MUTATED        0     23      1      3      1
  CBWD1 WILD-TYPE     57     74     21     32      8
D3V1, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1             0              57
  CLUS_2            23              74
  CLUS_3             1              21
  CLUS_4             3              32
  CLUS_5             1               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBWD1 MUTATED       21      0      1
  CBWD1 WILD-TYPE     47     49     58
D3V2, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1            21              47
  CLUS_2             0              49
  CLUS_3             1              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBWD1 MUTATED       18      2      7
  CBWD1 WILD-TYPE     45     66     60
D3V3, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1            18              45
  CLUS_2             2              66
  CLUS_3             7              60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBWD1 MUTATED        7      7      9      4
  CBWD1 WILD-TYPE     22     52     31     66
D3V4, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1             7              22
  CLUS_2             7              52
  CLUS_3             9              31
  CLUS_4             4              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBWD1 MUTATED       15      4      3      2      0
  CBWD1 WILD-TYPE     33     39     28     28     44
D3V5, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1            15              33
  CLUS_2             4              39
  CLUS_3             3              28
  CLUS_4             2              28
  CLUS_5             0              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CBWD1 MUTATED        5      0      1      6      3      0      9
  CBWD1 WILD-TYPE     27     15     33     34     29     28      6
D3V6, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1             5              27
  CLUS_2             0              15
  CLUS_3             1              33
  CLUS_4             6              34
  CLUS_5             3              29
  CLUS_6             0              28
  CLUS_7             9               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBWD1 MUTATED       23      4      1
  CBWD1 WILD-TYPE     79     71     43
D3V7, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1            23              79
  CLUS_2             4              71
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBWD1 MUTATED       15      9      2      2
  CBWD1 WILD-TYPE     26     74     43     50
D3V8, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1            15              26
  CLUS_2             9              74
  CLUS_3             2              43
  CLUS_4             2              50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CBWD1 MUTATED        2      2      7      7      0      2
  CBWD1 WILD-TYPE     19      6     50     21     14     27
D3V9, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             2               6
  CLUS_3             7              50
  CLUS_4             7              21
  CLUS_5             0              14
  CLUS_6             2              27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBWD1 MUTATED       13      2      5
  CBWD1 WILD-TYPE     86     35     16
D3V10, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1            13              86
  CLUS_2             2              35
  CLUS_3             5              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = KRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED        2     15      2      3      3
  KRAS WILD-TYPE     55     82     20     32      6
D4V1, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            2             55
  CLUS_2           15             82
  CLUS_3            2             20
  CLUS_4            3             32
  CLUS_5            3              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED        9      4      5
  KRAS WILD-TYPE     59     45     54
D4V2, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            9             59
  CLUS_2            4             45
  CLUS_3            5             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       10      7      7
  KRAS WILD-TYPE     53     61     60
D4V3, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           10             53
  CLUS_2            7             61
  CLUS_3            7             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED        4      3      9      8
  KRAS WILD-TYPE     25     56     31     62
D4V4, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            4             25
  CLUS_2            3             56
  CLUS_3            9             31
  CLUS_4            8             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED        9      4      2      4      2
  KRAS WILD-TYPE     39     39     29     26     42
D4V5, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            9             39
  CLUS_2            4             39
  CLUS_3            2             29
  CLUS_4            4             26
  CLUS_5            2             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRAS MUTATED        6      0      1      4      5      1      4
  KRAS WILD-TYPE     26     15     33     36     27     27     11
D4V6, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            6             26
  CLUS_2            0             15
  CLUS_3            1             33
  CLUS_4            4             36
  CLUS_5            5             27
  CLUS_6            1             27
  CLUS_7            4             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       15      7      3
  KRAS WILD-TYPE     87     68     41
D4V7, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           15             87
  CLUS_2            7             68
  CLUS_3            3             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED       10      6      5      4
  KRAS WILD-TYPE     31     77     40     48
D4V8, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           10             31
  CLUS_2            6             77
  CLUS_3            5             40
  CLUS_4            4             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRAS MUTATED        4      1      3      1      3      3
  KRAS WILD-TYPE     17      7     54     27     11     26
D4V9, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            4             17
  CLUS_2            1              7
  CLUS_3            3             54
  CLUS_4            1             27
  CLUS_5            3             11
  CLUS_6            3             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED        9      3      3
  KRAS WILD-TYPE     90     34     18
D4V10, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            9             90
  CLUS_2            3             34
  CLUS_3            3             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = ARID1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        0     33      2      6      0
  ARID1A WILD-TYPE     57     64     20     29      9
D5V1, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              0               57
  CLUS_2             33               64
  CLUS_3              2               20
  CLUS_4              6               29
  CLUS_5              0                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       18      5      7
  ARID1A WILD-TYPE     50     44     52
D5V2, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             18               50
  CLUS_2              5               44
  CLUS_3              7               52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       19      7     13
  ARID1A WILD-TYPE     44     61     54
D5V3, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             19               44
  CLUS_2              7               61
  CLUS_3             13               54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        6      6     17     10
  ARID1A WILD-TYPE     23     53     23     60
D5V4, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              6               23
  CLUS_2              6               53
  CLUS_3             17               23
  CLUS_4             10               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED       19      9      4      5      2
  ARID1A WILD-TYPE     29     34     27     25     42
D5V5, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             19               29
  CLUS_2              9               34
  CLUS_3              4               27
  CLUS_4              5               25
  CLUS_5              2               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARID1A MUTATED        6      8      3      5      5      2     10
  ARID1A WILD-TYPE     26      7     31     35     27     26      5
D5V6, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              6               26
  CLUS_2              8                7
  CLUS_3              3               31
  CLUS_4              5               35
  CLUS_5              5               27
  CLUS_6              2               26
  CLUS_7             10                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       28     11      2
  ARID1A WILD-TYPE     74     64     42
D5V7, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             28               74
  CLUS_2             11               64
  CLUS_3              2               42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED       15     17      4      5
  ARID1A WILD-TYPE     26     66     41     47
D5V8, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             15               26
  CLUS_2             17               66
  CLUS_3              4               41
  CLUS_4              5               47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID1A MUTATED        4      1     10      7      2      3
  ARID1A WILD-TYPE     17      7     47     21     12     26
D5V9, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4               17
  CLUS_2              1                7
  CLUS_3             10               47
  CLUS_4              7               21
  CLUS_5              2               12
  CLUS_6              3               26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       17      4      6
  ARID1A WILD-TYPE     82     33     15
D5V10, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             17               82
  CLUS_2              4               33
  CLUS_3              6               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = PGM5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGM5 MUTATED        0     16      3      1      2
  PGM5 WILD-TYPE     57     81     19     34      7
D6V1, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            0             57
  CLUS_2           16             81
  CLUS_3            3             19
  CLUS_4            1             34
  CLUS_5            2              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM5 MUTATED       14      1      1
  PGM5 WILD-TYPE     54     48     58
D6V2, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1           14             54
  CLUS_2            1             48
  CLUS_3            1             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM5 MUTATED       10      4      6
  PGM5 WILD-TYPE     53     64     61
D6V3, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1           10             53
  CLUS_2            4             64
  CLUS_3            6             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGM5 MUTATED        5      4      8      3
  PGM5 WILD-TYPE     24     55     32     67
D6V4, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            5             24
  CLUS_2            4             55
  CLUS_3            8             32
  CLUS_4            3             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGM5 MUTATED       11      2      5      1      0
  PGM5 WILD-TYPE     37     41     26     29     44
D6V5, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1           11             37
  CLUS_2            2             41
  CLUS_3            5             26
  CLUS_4            1             29
  CLUS_5            0             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PGM5 MUTATED        2      0      2      6      3      0      6
  PGM5 WILD-TYPE     30     15     32     34     29     28      9
D6V6, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            0             15
  CLUS_3            2             32
  CLUS_4            6             34
  CLUS_5            3             29
  CLUS_6            0             28
  CLUS_7            6              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM5 MUTATED       17      3      2
  PGM5 WILD-TYPE     85     72     42
D6V7, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1           17             85
  CLUS_2            3             72
  CLUS_3            2             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGM5 MUTATED       13      6      2      1
  PGM5 WILD-TYPE     28     77     43     51
D6V8, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1           13             28
  CLUS_2            6             77
  CLUS_3            2             43
  CLUS_4            1             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PGM5 MUTATED        3      2      4      4      0      1
  PGM5 WILD-TYPE     18      6     53     24     14     28
D6V9, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            3             18
  CLUS_2            2              6
  CLUS_3            4             53
  CLUS_4            4             24
  CLUS_5            0             14
  CLUS_6            1             28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM5 MUTATED        8      2      4
  PGM5 WILD-TYPE     91     35     17
D6V10, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            8             91
  CLUS_2            2             35
  CLUS_3            4             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = RHOA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOA MUTATED        0     10      1      2      0
  RHOA WILD-TYPE     57     87     21     33      9
D7V1, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0             57
  CLUS_2           10             87
  CLUS_3            1             21
  CLUS_4            2             33
  CLUS_5            0              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        3      2      6
  RHOA WILD-TYPE     65     47     53
D7V2, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3             65
  CLUS_2            2             47
  CLUS_3            6             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        3      4      5
  RHOA WILD-TYPE     60     64     62
D7V3, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3             60
  CLUS_2            4             64
  CLUS_3            5             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        2      5      1      4
  RHOA WILD-TYPE     27     54     39     66
D7V4, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            2             27
  CLUS_2            5             54
  CLUS_3            1             39
  CLUS_4            4             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOA MUTATED        2      4      2      3      1
  RHOA WILD-TYPE     46     39     29     27     43
D7V5, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            2             46
  CLUS_2            4             39
  CLUS_3            2             29
  CLUS_4            3             27
  CLUS_5            1             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RHOA MUTATED        2      0      4      3      2      1      0
  RHOA WILD-TYPE     30     15     30     37     30     27     15
D7V6, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            2             30
  CLUS_2            0             15
  CLUS_3            4             30
  CLUS_4            3             37
  CLUS_5            2             30
  CLUS_6            1             27
  CLUS_7            0             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        3     10      0
  RHOA WILD-TYPE     99     65     44
D7V7, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3             99
  CLUS_2           10             65
  CLUS_3            0             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        1      6      5      1
  RHOA WILD-TYPE     40     77     40     51
D7V8, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             40
  CLUS_2            6             77
  CLUS_3            5             40
  CLUS_4            1             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RHOA MUTATED        0      1      3      0      1      4
  RHOA WILD-TYPE     21      7     54     28     13     25
D7V9, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0             21
  CLUS_2            1              7
  CLUS_3            3             54
  CLUS_4            0             28
  CLUS_5            1             13
  CLUS_6            4             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        4      5      0
  RHOA WILD-TYPE     95     32     21
D7V10, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4             95
  CLUS_2            5             32
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = SMAD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED        5      6      1      7      0
  SMAD4 WILD-TYPE     52     91     21     28      9
D8V1, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             5              52
  CLUS_2             6              91
  CLUS_3             1              21
  CLUS_4             7              28
  CLUS_5             0               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        6      4      5
  SMAD4 WILD-TYPE     62     45     54
D8V2, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             6              62
  CLUS_2             4              45
  CLUS_3             5              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        9      5      2
  SMAD4 WILD-TYPE     54     63     65
D8V3, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             9              54
  CLUS_2             5              63
  CLUS_3             2              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED        3      2      5      6
  SMAD4 WILD-TYPE     26     57     35     64
D8V4, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             2              57
  CLUS_3             5              35
  CLUS_4             6              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED        5      1      7      4      0
  SMAD4 WILD-TYPE     43     42     24     26     44
D8V5, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             5              43
  CLUS_2             1              42
  CLUS_3             7              24
  CLUS_4             4              26
  CLUS_5             0              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMAD4 MUTATED        4      1      1      5      4      0      2
  SMAD4 WILD-TYPE     28     14     33     35     28     28     13
D8V6, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             1              14
  CLUS_3             1              33
  CLUS_4             5              35
  CLUS_5             4              28
  CLUS_6             0              28
  CLUS_7             2              13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       11      7      1
  SMAD4 WILD-TYPE     91     68     43
D8V7, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            11              91
  CLUS_2             7              68
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED        6      7      3      3
  SMAD4 WILD-TYPE     35     76     42     49
D8V8, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             6              35
  CLUS_2             7              76
  CLUS_3             3              42
  CLUS_4             3              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMAD4 MUTATED        1      1      3      6      0      1
  SMAD4 WILD-TYPE     20      7     54     22     14     28
D8V9, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             1               7
  CLUS_3             3              54
  CLUS_4             6              22
  CLUS_5             0              14
  CLUS_6             1              28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        6      2      4
  SMAD4 WILD-TYPE     93     35     17
D8V10, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             6              93
  CLUS_2             2              35
  CLUS_3             4              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = IRF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRF2 MUTATED        2      9      1      1      1
  IRF2 WILD-TYPE     55     88     21     34      8
D9V1, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            2             55
  CLUS_2            9             88
  CLUS_3            1             21
  CLUS_4            1             34
  CLUS_5            1              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF2 MUTATED        6      2      1
  IRF2 WILD-TYPE     62     47     58
D9V2, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            6             62
  CLUS_2            2             47
  CLUS_3            1             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF2 MUTATED        8      2      3
  IRF2 WILD-TYPE     55     66     64
D9V3, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            8             55
  CLUS_2            2             66
  CLUS_3            3             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRF2 MUTATED        2      2      5      4
  IRF2 WILD-TYPE     27     57     35     66
D9V4, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            2             57
  CLUS_3            5             35
  CLUS_4            4             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRF2 MUTATED        6      2      1      1      1
  IRF2 WILD-TYPE     42     41     30     29     43
D9V5, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            6             42
  CLUS_2            2             41
  CLUS_3            1             30
  CLUS_4            1             29
  CLUS_5            1             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IRF2 MUTATED        3      0      1      3      1      1      2
  IRF2 WILD-TYPE     29     15     33     37     31     27     13
D9V6, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            0             15
  CLUS_3            1             33
  CLUS_4            3             37
  CLUS_5            1             31
  CLUS_6            1             27
  CLUS_7            2             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF2 MUTATED       11      1      2
  IRF2 WILD-TYPE     91     74     42
D9V7, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1           11             91
  CLUS_2            1             74
  CLUS_3            2             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRF2 MUTATED        7      5      1      1
  IRF2 WILD-TYPE     34     78     44     51
D9V8, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            7             34
  CLUS_2            5             78
  CLUS_3            1             44
  CLUS_4            1             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IRF2 MUTATED        1      0      5      1      1      0
  IRF2 WILD-TYPE     20      8     52     27     13     29
D9V9, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            1             20
  CLUS_2            0              8
  CLUS_3            5             52
  CLUS_4            1             27
  CLUS_5            1             13
  CLUS_6            0             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF2 MUTATED        6      1      1
  IRF2 WILD-TYPE     93     36     20
D9V10, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            6             93
  CLUS_2            1             36
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = LARP4B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP4B MUTATED        1     10      1      0      0
  LARP4B WILD-TYPE     56     87     21     35      9
D10V1, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              1               56
  CLUS_2             10               87
  CLUS_3              1               21
  CLUS_4              0               35
  CLUS_5              0                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LARP4B MUTATED        6      3      0
  LARP4B WILD-TYPE     62     46     59
D10V2, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              6               62
  CLUS_2              3               46
  CLUS_3              0               59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LARP4B MUTATED        8      0      3
  LARP4B WILD-TYPE     55     68     64
D10V3, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              8               55
  CLUS_2              0               68
  CLUS_3              3               64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP4B MUTATED        2      2      6      1
  LARP4B WILD-TYPE     27     57     34     69
D10V4, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              2               27
  CLUS_2              2               57
  CLUS_3              6               34
  CLUS_4              1               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP4B MUTATED        4      0      2      3      1
  LARP4B WILD-TYPE     44     43     29     27     43
D10V5, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              4               44
  CLUS_2              0               43
  CLUS_3              2               29
  CLUS_4              3               27
  CLUS_5              1               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LARP4B MUTATED        2      0      0      1      3      1      3
  LARP4B WILD-TYPE     30     15     34     39     29     27     12
D10V6, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              2               30
  CLUS_2              0               15
  CLUS_3              0               34
  CLUS_4              1               39
  CLUS_5              3               29
  CLUS_6              1               27
  CLUS_7              3               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LARP4B MUTATED        9      2      1
  LARP4B WILD-TYPE     93     73     43
D10V7, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              9               93
  CLUS_2              2               73
  CLUS_3              1               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP4B MUTATED        6      5      0      1
  LARP4B WILD-TYPE     35     78     45     51
D10V8, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              6               35
  CLUS_2              5               78
  CLUS_3              0               45
  CLUS_4              1               51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LARP4B MUTATED        3      0      4      2      0      0
  LARP4B WILD-TYPE     18      8     53     26     14     29
D10V9, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              3               18
  CLUS_2              0                8
  CLUS_3              4               53
  CLUS_4              2               26
  CLUS_5              0               14
  CLUS_6              0               29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LARP4B MUTATED        7      0      2
  LARP4B WILD-TYPE     92     37     19
D10V10, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              7               92
  CLUS_2              0               37
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = APC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APC MUTATED       10     16      4      2      1
  APC WILD-TYPE     47     81     18     33      8
D11V1, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          10            47
  CLUS_2          16            81
  CLUS_3           4            18
  CLUS_4           2            33
  CLUS_5           1             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED       12      8      2
  APC WILD-TYPE     56     41     57
D11V2, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          12            56
  CLUS_2           8            41
  CLUS_3           2            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED       13      5     11
  APC WILD-TYPE     50     63     56
D11V3, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          13            50
  CLUS_2           5            63
  CLUS_3          11            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED        5      6     14      4
  APC WILD-TYPE     24     53     26     66
D11V4, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           5            24
  CLUS_2           6            53
  CLUS_3          14            26
  CLUS_4           4            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APC MUTATED        9      2      5      6      7
  APC WILD-TYPE     39     41     26     24     37
D11V5, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           9            39
  CLUS_2           2            41
  CLUS_3           5            26
  CLUS_4           6            24
  CLUS_5           7            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  APC MUTATED        1      0      2      8      8      4      6
  APC WILD-TYPE     31     15     32     32     24     24      9
D11V6, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           1            31
  CLUS_2           0            15
  CLUS_3           2            32
  CLUS_4           8            32
  CLUS_5           8            24
  CLUS_6           4            24
  CLUS_7           6             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED       22      4      7
  APC WILD-TYPE     80     71     37
D11V7, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          22            80
  CLUS_2           4            71
  CLUS_3           7            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED       13      8      2     10
  APC WILD-TYPE     28     75     43     42
D11V8, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          13            28
  CLUS_2           8            75
  CLUS_3           2            43
  CLUS_4          10            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  APC MUTATED        3      2      8      2      1      1
  APC WILD-TYPE     18      6     49     26     13     28
D11V9, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           3            18
  CLUS_2           2             6
  CLUS_3           8            49
  CLUS_4           2            26
  CLUS_5           1            13
  CLUS_6           1            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED       13      1      3
  APC WILD-TYPE     86     36     18
D11V10, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          13            86
  CLUS_2           1            36
  CLUS_3           3            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = FBXW7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED        2     15      1      1      0
  FBXW7 WILD-TYPE     55     82     21     34      9
D12V1, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             2              55
  CLUS_2            15              82
  CLUS_3             1              21
  CLUS_4             1              34
  CLUS_5             0               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       11      3      1
  FBXW7 WILD-TYPE     57     46     58
D12V2, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            11              57
  CLUS_2             3              46
  CLUS_3             1              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       12      1      5
  FBXW7 WILD-TYPE     51     67     62
D12V3, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            12              51
  CLUS_2             1              67
  CLUS_3             5              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        4      4      8      2
  FBXW7 WILD-TYPE     25     55     32     68
D12V4, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             4              25
  CLUS_2             4              55
  CLUS_3             8              32
  CLUS_4             2              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED       10      1      1      2      2
  FBXW7 WILD-TYPE     38     42     30     28     42
D12V5, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            10              38
  CLUS_2             1              42
  CLUS_3             1              30
  CLUS_4             2              28
  CLUS_5             2              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FBXW7 MUTATED        4      0      0      1      2      2      7
  FBXW7 WILD-TYPE     28     15     34     39     30     26      8
D12V6, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             0              15
  CLUS_3             0              34
  CLUS_4             1              39
  CLUS_5             2              30
  CLUS_6             2              26
  CLUS_7             7               8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       15      2      2
  FBXW7 WILD-TYPE     87     73     42
D12V7, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            15              87
  CLUS_2             2              73
  CLUS_3             2              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED       11      5      1      2
  FBXW7 WILD-TYPE     30     78     44     50
D12V8, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            11              30
  CLUS_2             5              78
  CLUS_3             1              44
  CLUS_4             2              50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXW7 MUTATED        4      0      6      4      0      0
  FBXW7 WILD-TYPE     17      8     51     24     14     29
D12V9, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             4              17
  CLUS_2             0               8
  CLUS_3             6              51
  CLUS_4             4              24
  CLUS_5             0              14
  CLUS_6             0              29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       10      0      4
  FBXW7 WILD-TYPE     89     37     17
D12V10, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            10              89
  CLUS_2             0              37
  CLUS_3             4              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = CDH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH1 MUTATED        0     12      2      3      0
  CDH1 WILD-TYPE     57     85     20     32      9
D13V1, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            0             57
  CLUS_2           12             85
  CLUS_3            2             20
  CLUS_4            3             32
  CLUS_5            0              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED        5      2      7
  CDH1 WILD-TYPE     63     47     52
D13V2, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            5             63
  CLUS_2            2             47
  CLUS_3            7             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED        4      8      6
  CDH1 WILD-TYPE     59     60     61
D13V3, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            4             59
  CLUS_2            8             60
  CLUS_3            6             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH1 MUTATED        2      7      3      6
  CDH1 WILD-TYPE     27     52     37     64
D13V4, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            7             52
  CLUS_3            3             37
  CLUS_4            6             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH1 MUTATED        2      7      1      4      2
  CDH1 WILD-TYPE     46     36     30     26     42
D13V5, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            7             36
  CLUS_3            1             30
  CLUS_4            4             26
  CLUS_5            2             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDH1 MUTATED        1      0      8      3      3      1      0
  CDH1 WILD-TYPE     31     15     26     37     29     27     15
D13V6, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            1             31
  CLUS_2            0             15
  CLUS_3            8             26
  CLUS_4            3             37
  CLUS_5            3             29
  CLUS_6            1             27
  CLUS_7            0             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED        8      9      1
  CDH1 WILD-TYPE     94     66     43
D13V7, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            8             94
  CLUS_2            9             66
  CLUS_3            1             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH1 MUTATED        6      3      8      1
  CDH1 WILD-TYPE     35     80     37     51
D13V8, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            6             35
  CLUS_2            3             80
  CLUS_3            8             37
  CLUS_4            1             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDH1 MUTATED        0      0      5      1      2      6
  CDH1 WILD-TYPE     21      8     52     27     12     23
D13V9, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            0             21
  CLUS_2            0              8
  CLUS_3            5             52
  CLUS_4            1             27
  CLUS_5            2             12
  CLUS_6            6             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED        8      5      1
  CDH1 WILD-TYPE     91     32     20
D13V10, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            8             91
  CLUS_2            5             32
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = HLA-B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-B MUTATED        0      9      2      1      0
  HLA-B WILD-TYPE     57     88     20     34      9
D14V1, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             0              57
  CLUS_2             9              88
  CLUS_3             2              20
  CLUS_4             1              34
  CLUS_5             0               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        9      0      0
  HLA-B WILD-TYPE     59     49     59
D14V2, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             9              59
  CLUS_2             0              49
  CLUS_3             0              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        9      1      2
  HLA-B WILD-TYPE     54     67     65
D14V3, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             9              54
  CLUS_2             1              67
  CLUS_3             2              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        3      1      7      1
  HLA-B WILD-TYPE     26     58     33     69
D14V4, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             3              26
  CLUS_2             1              58
  CLUS_3             7              33
  CLUS_4             1              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-B MUTATED        5      0      2      3      0
  HLA-B WILD-TYPE     43     43     29     27     44
D14V5, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             5              43
  CLUS_2             0              43
  CLUS_3             2              29
  CLUS_4             3              27
  CLUS_5             0              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HLA-B MUTATED        3      1      0      1      2      0      3
  HLA-B WILD-TYPE     29     14     34     39     30     28     12
D14V6, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              14
  CLUS_3             0              34
  CLUS_4             1              39
  CLUS_5             2              30
  CLUS_6             0              28
  CLUS_7             3              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED       10      2      0
  HLA-B WILD-TYPE     92     73     44
D14V7, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1            10              92
  CLUS_2             2              73
  CLUS_3             0              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        5      5      2      0
  HLA-B WILD-TYPE     36     78     43     52
D14V8, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             5              36
  CLUS_2             5              78
  CLUS_3             2              43
  CLUS_4             0              52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HLA-B MUTATED        0      0      5      1      0      1
  HLA-B WILD-TYPE     21      8     52     27     14     28
D14V9, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             0              21
  CLUS_2             0               8
  CLUS_3             5              52
  CLUS_4             1              27
  CLUS_5             0              14
  CLUS_6             1              28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        4      2      1
  HLA-B WILD-TYPE     95     35     20
D14V10, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             4              95
  CLUS_2             2              35
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = BCOR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCOR MUTATED        0     13      2      0      1
  BCOR WILD-TYPE     57     84     20     35      8
D15V1, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            0             57
  CLUS_2           13             84
  CLUS_3            2             20
  CLUS_4            0             35
  CLUS_5            1              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCOR MUTATED        7      0      3
  BCOR WILD-TYPE     61     49     56
D15V2, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            7             61
  CLUS_2            0             49
  CLUS_3            3             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCOR MUTATED        7      2      5
  BCOR WILD-TYPE     56     66     62
D15V3, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            7             56
  CLUS_2            2             66
  CLUS_3            5             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCOR MUTATED        2      4      7      1
  BCOR WILD-TYPE     27     55     33     69
D15V4, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            2             27
  CLUS_2            4             55
  CLUS_3            7             33
  CLUS_4            1             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCOR MUTATED        8      2      1      2      0
  BCOR WILD-TYPE     40     41     30     28     44
D15V5, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            8             40
  CLUS_2            2             41
  CLUS_3            1             30
  CLUS_4            2             28
  CLUS_5            0             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCOR MUTATED        4      3      0      1      2      0      3
  BCOR WILD-TYPE     28     12     34     39     30     28     12
D15V6, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            4             28
  CLUS_2            3             12
  CLUS_3            0             34
  CLUS_4            1             39
  CLUS_5            2             30
  CLUS_6            0             28
  CLUS_7            3             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCOR MUTATED       13      3      0
  BCOR WILD-TYPE     89     72     44
D15V7, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1           13             89
  CLUS_2            3             72
  CLUS_3            0             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCOR MUTATED        6      7      2      1
  BCOR WILD-TYPE     35     76     43     51
D15V8, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            6             35
  CLUS_2            7             76
  CLUS_3            2             43
  CLUS_4            1             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCOR MUTATED        0      0      5      2      0      2
  BCOR WILD-TYPE     21      8     52     26     14     27
D15V9, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            0             21
  CLUS_2            0              8
  CLUS_3            5             52
  CLUS_4            2             26
  CLUS_5            0             14
  CLUS_6            2             27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCOR MUTATED        6      2      1
  BCOR WILD-TYPE     93     35     20
D15V10, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            6             93
  CLUS_2            2             35
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = C13ORF33 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C13ORF33 MUTATED        0      3      1      1      1
  C13ORF33 WILD-TYPE     57     94     21     34      8
D16V1, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                0                 57
  CLUS_2                3                 94
  CLUS_3                1                 21
  CLUS_4                1                 34
  CLUS_5                1                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF33 MUTATED        6      0      0
  C13ORF33 WILD-TYPE     62     49     59
D16V2, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                6                 62
  CLUS_2                0                 49
  CLUS_3                0                 59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF33 MUTATED        5      1      0
  C13ORF33 WILD-TYPE     58     67     67
D16V3, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                5                 58
  CLUS_2                1                 67
  CLUS_3                0                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C13ORF33 MUTATED        1      1      3      1
  C13ORF33 WILD-TYPE     28     58     37     69
D16V4, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                1                 58
  CLUS_3                3                 37
  CLUS_4                1                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C13ORF33 MUTATED        3      0      1      0      0
  C13ORF33 WILD-TYPE     45     43     30     30     44
D16V5, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                3                 45
  CLUS_2                0                 43
  CLUS_3                1                 30
  CLUS_4                0                 30
  CLUS_5                0                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C13ORF33 MUTATED        0      0      0      1      0      0      3
  C13ORF33 WILD-TYPE     32     15     34     39     32     28     12
D16V6, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                0                 32
  CLUS_2                0                 15
  CLUS_3                0                 34
  CLUS_4                1                 39
  CLUS_5                0                 32
  CLUS_6                0                 28
  CLUS_7                3                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF33 MUTATED        3      2      1
  C13ORF33 WILD-TYPE     99     73     43
D16V7, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                3                 99
  CLUS_2                2                 73
  CLUS_3                1                 43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C13ORF33 MUTATED        3      2      1      0
  C13ORF33 WILD-TYPE     38     81     44     52
D16V8, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                3                 38
  CLUS_2                2                 81
  CLUS_3                1                 44
  CLUS_4                0                 52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C13ORF33 MUTATED        1      0      0      3      0      1
  C13ORF33 WILD-TYPE     20      8     57     25     14     28
D16V9, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                1                 20
  CLUS_2                0                  8
  CLUS_3                0                 57
  CLUS_4                3                 25
  CLUS_5                0                 14
  CLUS_6                1                 28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF33 MUTATED        2      1      2
  C13ORF33 WILD-TYPE     97     36     19
D16V10, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                2                 97
  CLUS_2                1                 36
  CLUS_3                2                 19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = CIC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIC MUTATED        0     11      0      2      1
  CIC WILD-TYPE     57     86     22     33      8
D17V1, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0            57
  CLUS_2          11            86
  CLUS_3           0            22
  CLUS_4           2            33
  CLUS_5           1             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED        8      0      1
  CIC WILD-TYPE     60     49     58
D17V2, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           8            60
  CLUS_2           0            49
  CLUS_3           1            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED        9      2      3
  CIC WILD-TYPE     54     66     64
D17V3, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           9            54
  CLUS_2           2            66
  CLUS_3           3            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        4      3      6      1
  CIC WILD-TYPE     25     56     34     69
D17V4, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           4            25
  CLUS_2           3            56
  CLUS_3           6            34
  CLUS_4           1            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIC MUTATED        3      2      1      3      1
  CIC WILD-TYPE     45     41     30     27     43
D17V5, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           3            45
  CLUS_2           2            41
  CLUS_3           1            30
  CLUS_4           3            27
  CLUS_5           1            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CIC MUTATED        4      0      0      0      4      0      2
  CIC WILD-TYPE     28     15     34     40     28     28     13
D17V6, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           4            28
  CLUS_2           0            15
  CLUS_3           0            34
  CLUS_4           0            40
  CLUS_5           4            28
  CLUS_6           0            28
  CLUS_7           2            13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED       12      1      1
  CIC WILD-TYPE     90     74     43
D17V7, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          12            90
  CLUS_2           1            74
  CLUS_3           1            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        9      4      1      0
  CIC WILD-TYPE     32     79     44     52
D17V8, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           9            32
  CLUS_2           4            79
  CLUS_3           1            44
  CLUS_4           0            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CIC MUTATED        1      0      3      1      0      1
  CIC WILD-TYPE     20      8     54     27     14     28
D17V9, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           1            20
  CLUS_2           0             8
  CLUS_3           3            54
  CLUS_4           1            27
  CLUS_5           0            14
  CLUS_6           1            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED        2      1      3
  CIC WILD-TYPE     97     36     18
D17V10, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           2            97
  CLUS_2           1            36
  CLUS_3           3            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = ACVR1B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACVR1B MUTATED        0      8      0      1      1
  ACVR1B WILD-TYPE     57     89     22     34      8
D18V1, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              0               57
  CLUS_2              8               89
  CLUS_3              0               22
  CLUS_4              1               34
  CLUS_5              1                8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR1B MUTATED        5      1      1
  ACVR1B WILD-TYPE     63     48     58
D18V2, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              5               63
  CLUS_2              1               48
  CLUS_3              1               58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR1B MUTATED        4      2      4
  ACVR1B WILD-TYPE     59     66     63
D18V3, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              4               59
  CLUS_2              2               66
  CLUS_3              4               63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1B MUTATED        1      2      5      2
  ACVR1B WILD-TYPE     28     57     35     68
D18V4, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              1               28
  CLUS_2              2               57
  CLUS_3              5               35
  CLUS_4              2               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACVR1B MUTATED        3      0      0      4      0
  ACVR1B WILD-TYPE     45     43     31     26     44
D18V5, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              3               45
  CLUS_2              0               43
  CLUS_3              0               31
  CLUS_4              4               26
  CLUS_5              0               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACVR1B MUTATED        2      0      0      2      3      0      0
  ACVR1B WILD-TYPE     30     15     34     38     29     28     15
D18V6, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              2               30
  CLUS_2              0               15
  CLUS_3              0               34
  CLUS_4              2               38
  CLUS_5              3               29
  CLUS_6              0               28
  CLUS_7              0               15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR1B MUTATED        8      2      0
  ACVR1B WILD-TYPE     94     73     44
D18V7, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              8               94
  CLUS_2              2               73
  CLUS_3              0               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1B MUTATED        6      3      1      0
  ACVR1B WILD-TYPE     35     80     44     52
D18V8, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              6               35
  CLUS_2              3               80
  CLUS_3              1               44
  CLUS_4              0               52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACVR1B MUTATED        1      1      3      2      0      0
  ACVR1B WILD-TYPE     20      7     54     26     14     29
D18V9, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              1               20
  CLUS_2              1                7
  CLUS_3              3               54
  CLUS_4              2               26
  CLUS_5              0               14
  CLUS_6              0               29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR1B MUTATED        5      0      2
  ACVR1B WILD-TYPE     94     37     19
D18V10, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              5               94
  CLUS_2              0               37
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = ZBTB20 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB20 MUTATED        0     13      1      2      0
  ZBTB20 WILD-TYPE     57     84     21     33      9
D19V1, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              0               57
  CLUS_2             13               84
  CLUS_3              1               21
  CLUS_4              2               33
  CLUS_5              0                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED       10      0      1
  ZBTB20 WILD-TYPE     58     49     58
D19V2, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1             10               58
  CLUS_2              0               49
  CLUS_3              1               58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        7      2      6
  ZBTB20 WILD-TYPE     56     66     61
D19V3, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              7               56
  CLUS_2              2               66
  CLUS_3              6               61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        3      3      6      3
  ZBTB20 WILD-TYPE     26     56     34     67
D19V4, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              3               26
  CLUS_2              3               56
  CLUS_3              6               34
  CLUS_4              3               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB20 MUTATED        6      1      1      5      1
  ZBTB20 WILD-TYPE     42     42     30     25     43
D19V5, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              6               42
  CLUS_2              1               42
  CLUS_3              1               30
  CLUS_4              5               25
  CLUS_5              1               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZBTB20 MUTATED        3      0      0      2      5      0      4
  ZBTB20 WILD-TYPE     29     15     34     38     27     28     11
D19V6, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              0               15
  CLUS_3              0               34
  CLUS_4              2               38
  CLUS_5              5               27
  CLUS_6              0               28
  CLUS_7              4               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED       14      2      0
  ZBTB20 WILD-TYPE     88     73     44
D19V7, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1             14               88
  CLUS_2              2               73
  CLUS_3              0               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        9      6      1      0
  ZBTB20 WILD-TYPE     32     77     44     52
D19V8, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              9               32
  CLUS_2              6               77
  CLUS_3              1               44
  CLUS_4              0               52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZBTB20 MUTATED        1      1      4      4      0      0
  ZBTB20 WILD-TYPE     20      7     53     24     14     29
D19V9, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              1               20
  CLUS_2              1                7
  CLUS_3              4               53
  CLUS_4              4               24
  CLUS_5              0               14
  CLUS_6              0               29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        8      0      2
  ZBTB20 WILD-TYPE     91     37     19
D19V10, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              8               91
  CLUS_2              0               37
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = MVK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MVK MUTATED        0      6      0      2      0
  MVK WILD-TYPE     57     91     22     33      9
D20V1, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           0            57
  CLUS_2           6            91
  CLUS_3           0            22
  CLUS_4           2            33
  CLUS_5           0             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MVK MUTATED        4      0      0
  MVK WILD-TYPE     64     49     59
D20V2, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           4            64
  CLUS_2           0            49
  CLUS_3           0            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MVK MUTATED        5      0      3
  MVK WILD-TYPE     58     68     64
D20V3, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           5            58
  CLUS_2           0            68
  CLUS_3           3            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MVK MUTATED        1      1      6      0
  MVK WILD-TYPE     28     58     34     70
D20V4, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           1            28
  CLUS_2           1            58
  CLUS_3           6            34
  CLUS_4           0            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MVK MUTATED        3      1      1      1      0
  MVK WILD-TYPE     45     42     30     29     44
D20V5, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           3            45
  CLUS_2           1            42
  CLUS_3           1            30
  CLUS_4           1            29
  CLUS_5           0            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MVK MUTATED        1      1      0      1      1      0      2
  MVK WILD-TYPE     31     14     34     39     31     28     13
D20V6, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           1            31
  CLUS_2           1            14
  CLUS_3           0            34
  CLUS_4           1            39
  CLUS_5           1            31
  CLUS_6           0            28
  CLUS_7           2            13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MVK MUTATED        7      1      0
  MVK WILD-TYPE     95     74     44
D20V7, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           7            95
  CLUS_2           1            74
  CLUS_3           0            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MVK MUTATED        6      1      1      0
  MVK WILD-TYPE     35     82     44     52
D20V8, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           6            35
  CLUS_2           1            82
  CLUS_3           1            44
  CLUS_4           0            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MVK MUTATED        0      0      1      1      0      1
  MVK WILD-TYPE     21      8     56     27     14     28
D20V9, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           0            21
  CLUS_2           0             8
  CLUS_3           1            56
  CLUS_4           1            27
  CLUS_5           0            14
  CLUS_6           1            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MVK MUTATED        1      1      1
  MVK WILD-TYPE     98     36     20
D20V10, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           1            98
  CLUS_2           1            36
  CLUS_3           1            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = ERBB2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB2 MUTATED        2      7      1      1      0
  ERBB2 WILD-TYPE     55     90     21     34      9
D21V1, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             7              90
  CLUS_3             1              21
  CLUS_4             1              34
  CLUS_5             0               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB2 MUTATED        5      1      2
  ERBB2 WILD-TYPE     63     48     57
D21V2, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             5              63
  CLUS_2             1              48
  CLUS_3             2              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB2 MUTATED        6      2      3
  ERBB2 WILD-TYPE     57     66     64
D21V3, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             6              57
  CLUS_2             2              66
  CLUS_3             3              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2 MUTATED        3      3      2      3
  ERBB2 WILD-TYPE     26     56     38     67
D21V4, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             3              56
  CLUS_3             2              38
  CLUS_4             3              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB2 MUTATED        4      2      1      2      1
  ERBB2 WILD-TYPE     44     41     30     28     43
D21V5, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             2              41
  CLUS_3             1              30
  CLUS_4             2              28
  CLUS_5             1              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERBB2 MUTATED        2      0      1      3      3      0      1
  ERBB2 WILD-TYPE     30     15     33     37     29     28     14
D21V6, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              15
  CLUS_3             1              33
  CLUS_4             3              37
  CLUS_5             3              29
  CLUS_6             0              28
  CLUS_7             1              14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB2 MUTATED        8      2      1
  ERBB2 WILD-TYPE     94     73     43
D21V7, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             8              94
  CLUS_2             2              73
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2 MUTATED        4      4      2      1
  ERBB2 WILD-TYPE     37     79     43     51
D21V8, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             4              37
  CLUS_2             4              79
  CLUS_3             2              43
  CLUS_4             1              51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERBB2 MUTATED        1      0      3      3      0      1
  ERBB2 WILD-TYPE     20      8     54     25     14     28
D21V9, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             0               8
  CLUS_3             3              54
  CLUS_4             3              25
  CLUS_5             0              14
  CLUS_6             1              28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB2 MUTATED        6      1      1
  ERBB2 WILD-TYPE     93     36     20
D21V10, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             6              93
  CLUS_2             1              36
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = CR1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1 MUTATED        2     13      0      3      2
  CR1 WILD-TYPE     55     84     22     32      7
D22V1, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           2            55
  CLUS_2          13            84
  CLUS_3           0            22
  CLUS_4           3            32
  CLUS_5           2             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CR1 MUTATED       12      1      0
  CR1 WILD-TYPE     56     48     59
D22V2, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1          12            56
  CLUS_2           1            48
  CLUS_3           0            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CR1 MUTATED       10      3      6
  CR1 WILD-TYPE     53     65     61
D22V3, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1          10            53
  CLUS_2           3            65
  CLUS_3           6            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR1 MUTATED        5      5      6      3
  CR1 WILD-TYPE     24     54     34     67
D22V4, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           5            24
  CLUS_2           5            54
  CLUS_3           6            34
  CLUS_4           3            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1 MUTATED       11      1      2      4      0
  CR1 WILD-TYPE     37     42     29     26     44
D22V5, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1          11            37
  CLUS_2           1            42
  CLUS_3           2            29
  CLUS_4           4            26
  CLUS_5           0            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CR1 MUTATED        2      1      0      6      2      0      7
  CR1 WILD-TYPE     30     14     34     34     30     28      8
D22V6, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           2            30
  CLUS_2           1            14
  CLUS_3           0            34
  CLUS_4           6            34
  CLUS_5           2            30
  CLUS_6           0            28
  CLUS_7           7             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CR1 MUTATED       17      3      0
  CR1 WILD-TYPE     85     72     44
D22V7, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1          17            85
  CLUS_2           3            72
  CLUS_3           0            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR1 MUTATED        8      9      2      1
  CR1 WILD-TYPE     33     74     43     51
D22V8, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           8            33
  CLUS_2           9            74
  CLUS_3           2            43
  CLUS_4           1            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CR1 MUTATED        0      0      5      4      0      1
  CR1 WILD-TYPE     21      8     52     24     14     28
D22V9, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           0            21
  CLUS_2           0             8
  CLUS_3           5            52
  CLUS_4           4            24
  CLUS_5           0            14
  CLUS_6           1            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CR1 MUTATED        8      1      1
  CR1 WILD-TYPE     91     36     20
D22V10, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           8            91
  CLUS_2           1            36
  CLUS_3           1            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = C1R MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1R MUTATED        0      3      0      0      0
  C1R WILD-TYPE     57     94     22     35      9
D23V1, multiclass
        clus
vv       C1R MUTATED C1R WILD-TYPE
  CLUS_1           0            57
  CLUS_2           3            94
  CLUS_3           0            22
  CLUS_4           0            35
  CLUS_5           0             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  C1R MUTATED        1      0      1
  C1R WILD-TYPE     67     49     58
D23V2, multiclass
[1] "Remove cluster labels:" "C1R MUTATED"           
clus
  C1R MUTATED C1R WILD-TYPE 
            2           174 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6453    TCGA-BR-6454 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6455    TCGA-BR-6456    TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6563 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6707    TCGA-BR-6710    TCGA-BR-6801    TCGA-BR-6802    TCGA-BR-6803 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197    TCGA-BR-7703    TCGA-BR-7707 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-7715    TCGA-BR-7716    TCGA-BR-7717    TCGA-BR-7722    TCGA-BR-7723 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-7851    TCGA-BR-7901    TCGA-BR-7957    TCGA-BR-8059    TCGA-BR-8077 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8080    TCGA-BR-8081    TCGA-BR-8284    TCGA-BR-8295    TCGA-BR-8296 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8360    TCGA-BR-8361    TCGA-BR-8365    TCGA-BR-8366    TCGA-BR-8367 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8368    TCGA-BR-8370    TCGA-BR-8371    TCGA-BR-8372    TCGA-BR-8373 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384    TCGA-BR-8484    TCGA-BR-8485 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8486    TCGA-BR-8588    TCGA-BR-8589    TCGA-BR-8590    TCGA-BR-8591 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8676    TCGA-BR-8677    TCGA-BR-8678    TCGA-BR-8679    TCGA-BR-8680 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8687    TCGA-BR-8690    TCGA-BR-A4IV 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-A4IY    TCGA-BR-A4IZ    TCGA-BR-A4J1    TCGA-BR-A4J4    TCGA-BR-A4J6 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-A4J7    TCGA-BR-A4J8    TCGA-BR-A4QI    TCGA-CD-5798    TCGA-CD-5799 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5804 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525    TCGA-CD-8526    TCGA-CD-8528 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-8529    TCGA-CD-8530    TCGA-CD-8531    TCGA-CD-8532    TCGA-CD-8534 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-8535    TCGA-CD-A4MI    TCGA-CD-A4MJ    TCGA-CG-4437    TCGA-CG-4441 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-5722    TCGA-CG-5724    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8573 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-8574    TCGA-D7-8576    TCGA-D7-A4YT    TCGA-D7-A4YU    TCGA-D7-A4YV 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-A4Z0    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-FP-7735    TCGA-FP-7829    TCGA-FP-7916    TCGA-FP-7998    TCGA-FP-8099 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-FP-8209    TCGA-HF-7132    TCGA-HF-7133    TCGA-HF-7136    TCGA-HJ-7597 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-HU-8243    TCGA-HU-8245    TCGA-HU-8604    TCGA-HU-8610    TCGA-HU-A4G2 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-HU-A4GD    TCGA-HU-A4GN    TCGA-HU-A4GP    TCGA-HU-A4GQ    TCGA-HU-A4GU 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-HU-A4H3    TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6    TCGA-IN-7806 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663    TCGA-IP-7968 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  C1R MUTATED        2      0      1
  C1R WILD-TYPE     61     68     66
D23V3, multiclass
        clus
vv       C1R MUTATED C1R WILD-TYPE
  CLUS_1           2            61
  CLUS_2           0            68
  CLUS_3           1            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1R MUTATED        1      0      2      0
  C1R WILD-TYPE     28     59     38     70
D23V4, multiclass
        clus
vv       C1R MUTATED C1R WILD-TYPE
  CLUS_1           1            28
  CLUS_2           0            59
  CLUS_3           2            38
  CLUS_4           0            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1R MUTATED        2      0      0      0      0
  C1R WILD-TYPE     46     43     31     30     44
D23V5, multiclass
[1] "Remove cluster labels:" "C1R MUTATED"           
clus
  C1R MUTATED C1R WILD-TYPE 
            2           194 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-4187    TCGA-BR-4191    TCGA-BR-4201 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-4253    TCGA-BR-4255    TCGA-BR-4256    TCGA-BR-4257    TCGA-BR-4267 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-4279    TCGA-BR-4280    TCGA-BR-4292    TCGA-BR-4294    TCGA-BR-4357 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-4361    TCGA-BR-4362    TCGA-BR-4363    TCGA-BR-4366    TCGA-BR-4368 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-4369    TCGA-BR-4370    TCGA-BR-4371    TCGA-BR-6452    TCGA-BR-6453 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6454    TCGA-BR-6455    TCGA-BR-6456    TCGA-BR-6457    TCGA-BR-6458 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6563    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6710    TCGA-BR-6801    TCGA-BR-6802 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6803    TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197    TCGA-BR-7703 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-7707    TCGA-BR-7715    TCGA-BR-7716    TCGA-BR-7717    TCGA-BR-7722 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-7723    TCGA-BR-7851    TCGA-BR-7901    TCGA-BR-7957    TCGA-BR-8059 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8077    TCGA-BR-8080    TCGA-BR-8081    TCGA-BR-8284    TCGA-BR-8361 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8365    TCGA-BR-8366    TCGA-BR-8367    TCGA-BR-8368    TCGA-BR-8371 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8372    TCGA-BR-8373    TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8484    TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8588    TCGA-BR-8589 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8590    TCGA-BR-8591    TCGA-BR-8677    TCGA-BR-8678    TCGA-BR-8679 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8687    TCGA-BR-A4IV 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-A4IY    TCGA-BR-A4IZ    TCGA-BR-A4J1    TCGA-BR-A4J4    TCGA-BR-A4J6 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-A4J7    TCGA-BR-A4J8    TCGA-BR-A4QI    TCGA-CD-5798    TCGA-CD-5799 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5803    TCGA-CD-5804    TCGA-CD-5813 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-8524    TCGA-CD-8526    TCGA-CD-8528    TCGA-CD-8529    TCGA-CD-8530 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-8531    TCGA-CD-8532    TCGA-CD-8534    TCGA-CD-8535    TCGA-CD-A4MI 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-A4MJ    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4462    TCGA-CG-4465 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4474    TCGA-CG-4475    TCGA-CG-4476 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-4477    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719    TCGA-CG-5720 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5724    TCGA-CG-5726    TCGA-CG-5732 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-6518    TCGA-D7-6519 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-6520    TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-6526    TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822    TCGA-D7-8570    TCGA-D7-8572 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-8573    TCGA-D7-8574    TCGA-D7-8576    TCGA-D7-A4YT    TCGA-D7-A4YU 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-A4YV    TCGA-D7-A4Z0    TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-FP-7735    TCGA-FP-7829    TCGA-FP-7916    TCGA-FP-7998    TCGA-FP-8099 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-FP-8209    TCGA-HF-7132    TCGA-HF-7133    TCGA-HF-7136    TCGA-HU-8604 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-HU-8610    TCGA-HU-A4G2    TCGA-HU-A4GN    TCGA-HU-A4GP    TCGA-HU-A4GU 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-HU-A4H3    TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6    TCGA-IN-7806 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663    TCGA-IP-7968 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C1R MUTATED        1      0      0      0      0      0      1
  C1R WILD-TYPE     31     15     34     40     32     28     14
D23V6, multiclass
[1] "Remove cluster labels:" "C1R MUTATED"           
clus
  C1R MUTATED C1R WILD-TYPE 
            2           194 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-4187    TCGA-BR-4191    TCGA-BR-4201 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-4253    TCGA-BR-4255    TCGA-BR-4256    TCGA-BR-4257    TCGA-BR-4267 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-4279    TCGA-BR-4280    TCGA-BR-4292    TCGA-BR-4294    TCGA-BR-4357 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-4361    TCGA-BR-4362    TCGA-BR-4363    TCGA-BR-4366    TCGA-BR-4368 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-4369    TCGA-BR-4370    TCGA-BR-4371    TCGA-BR-6452    TCGA-BR-6453 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6454    TCGA-BR-6455    TCGA-BR-6456    TCGA-BR-6457    TCGA-BR-6458 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6563    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6710    TCGA-BR-6801    TCGA-BR-6802 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6803    TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197    TCGA-BR-7703 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-7707    TCGA-BR-7715    TCGA-BR-7716    TCGA-BR-7717    TCGA-BR-7722 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-7723    TCGA-BR-7851    TCGA-BR-7901    TCGA-BR-7957    TCGA-BR-8059 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8077    TCGA-BR-8080    TCGA-BR-8081    TCGA-BR-8284    TCGA-BR-8361 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8365    TCGA-BR-8366    TCGA-BR-8367    TCGA-BR-8368    TCGA-BR-8371 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8372    TCGA-BR-8373    TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8484    TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8588    TCGA-BR-8589 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8590    TCGA-BR-8591    TCGA-BR-8677    TCGA-BR-8678    TCGA-BR-8679 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8687    TCGA-BR-A4IV 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-A4IY    TCGA-BR-A4IZ    TCGA-BR-A4J1    TCGA-BR-A4J4    TCGA-BR-A4J6 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-A4J7    TCGA-BR-A4J8    TCGA-BR-A4QI    TCGA-CD-5798    TCGA-CD-5799 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5803    TCGA-CD-5804    TCGA-CD-5813 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-8524    TCGA-CD-8526    TCGA-CD-8528    TCGA-CD-8529    TCGA-CD-8530 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-8531    TCGA-CD-8532    TCGA-CD-8534    TCGA-CD-8535    TCGA-CD-A4MI 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-A4MJ    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4462    TCGA-CG-4465 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4474    TCGA-CG-4475    TCGA-CG-4476 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-4477    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719    TCGA-CG-5720 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5724    TCGA-CG-5726    TCGA-CG-5732 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-6518    TCGA-D7-6519 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-6520    TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-6526    TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822    TCGA-D7-8570    TCGA-D7-8572 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-8573    TCGA-D7-8574    TCGA-D7-8576    TCGA-D7-A4YT    TCGA-D7-A4YU 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-A4YV    TCGA-D7-A4Z0    TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-FP-7735    TCGA-FP-7829    TCGA-FP-7916    TCGA-FP-7998    TCGA-FP-8099 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-FP-8209    TCGA-HF-7132    TCGA-HF-7133    TCGA-HF-7136    TCGA-HU-8604 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-HU-8610    TCGA-HU-A4G2    TCGA-HU-A4GN    TCGA-HU-A4GP    TCGA-HU-A4GU 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-HU-A4H3    TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6    TCGA-IN-7806 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663    TCGA-IP-7968 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  C1R MUTATED        3      0      0
  C1R WILD-TYPE     99     75     44
D23V7, multiclass
        clus
vv       C1R MUTATED C1R WILD-TYPE
  CLUS_1           3            99
  CLUS_2           0            75
  CLUS_3           0            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1R MUTATED        2      1      0      0
  C1R WILD-TYPE     39     82     45     52
D23V8, multiclass
        clus
vv       C1R MUTATED C1R WILD-TYPE
  CLUS_1           2            39
  CLUS_2           1            82
  CLUS_3           0            45
  CLUS_4           0            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C1R MUTATED        1      0      1      0      0      0
  C1R WILD-TYPE     20      8     56     28     14     29
D23V9, multiclass
[1] "Remove cluster labels:" "C1R MUTATED"           
clus
  C1R MUTATED C1R WILD-TYPE 
            2           155 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6453    TCGA-BR-6454 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6455    TCGA-BR-6456    TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6563 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6707    TCGA-BR-6710    TCGA-BR-6801    TCGA-BR-6802    TCGA-BR-6803 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197    TCGA-BR-7703    TCGA-BR-7707 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-7715    TCGA-BR-7717    TCGA-BR-7723    TCGA-BR-7851    TCGA-BR-7901 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-7957    TCGA-BR-8059    TCGA-BR-8077    TCGA-BR-8080    TCGA-BR-8284 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8295    TCGA-BR-8296    TCGA-BR-8360    TCGA-BR-8361    TCGA-BR-8365 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8368    TCGA-BR-8370    TCGA-BR-8371    TCGA-BR-8372    TCGA-BR-8373 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384    TCGA-BR-8485    TCGA-BR-8486 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8588    TCGA-BR-8590    TCGA-BR-8591    TCGA-BR-8676    TCGA-BR-8677 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8678    TCGA-BR-8679    TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8687    TCGA-BR-8690    TCGA-BR-A4IV    TCGA-BR-A4IY    TCGA-BR-A4IZ 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-A4J1    TCGA-BR-A4J6    TCGA-BR-A4J7    TCGA-BR-A4J8    TCGA-BR-A4QI 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-5803    TCGA-CD-5804    TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-8526    TCGA-CD-8529    TCGA-CD-8530    TCGA-CD-8531    TCGA-CD-8532 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-8534    TCGA-CD-8535    TCGA-CD-A4MI    TCGA-CG-4437    TCGA-CG-4441 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-4449    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719    TCGA-CG-5720 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5724    TCGA-CG-5726    TCGA-CG-5727 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-5728    TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-6520    TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-6526    TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822    TCGA-D7-8570    TCGA-D7-8572 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-8574    TCGA-D7-8576    TCGA-D7-A4YT    TCGA-D7-A4YU    TCGA-D7-A4YV 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-A4Z0    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-FP-7735    TCGA-FP-7829    TCGA-FP-7998    TCGA-FP-8099    TCGA-FP-8209 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-HF-7132    TCGA-HF-7136    TCGA-HU-8243    TCGA-HU-8604    TCGA-HU-A4GD 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-HU-A4GN    TCGA-HU-A4GQ    TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-IN-7806    TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663    TCGA-IP-7968 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  C1R MUTATED        1      0      1
  C1R WILD-TYPE     98     37     20
D23V10, multiclass
[1] "Remove cluster labels:" "C1R MUTATED"           
clus
  C1R MUTATED C1R WILD-TYPE 
            2           155 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6453    TCGA-BR-6454 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6455    TCGA-BR-6456    TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6563 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6707    TCGA-BR-6710    TCGA-BR-6801    TCGA-BR-6802    TCGA-BR-6803 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197    TCGA-BR-7703    TCGA-BR-7707 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-7715    TCGA-BR-7717    TCGA-BR-7723    TCGA-BR-7851    TCGA-BR-7901 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-7957    TCGA-BR-8059    TCGA-BR-8077    TCGA-BR-8080    TCGA-BR-8284 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8295    TCGA-BR-8296    TCGA-BR-8360    TCGA-BR-8361    TCGA-BR-8365 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8368    TCGA-BR-8370    TCGA-BR-8371    TCGA-BR-8372    TCGA-BR-8373 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384    TCGA-BR-8485    TCGA-BR-8486 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8588    TCGA-BR-8590    TCGA-BR-8591    TCGA-BR-8676    TCGA-BR-8677 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8678    TCGA-BR-8679    TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-8687    TCGA-BR-8690    TCGA-BR-A4IV    TCGA-BR-A4IY    TCGA-BR-A4IZ 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-BR-A4J1    TCGA-BR-A4J6    TCGA-BR-A4J7    TCGA-BR-A4J8    TCGA-BR-A4QI 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-5803    TCGA-CD-5804    TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-8526    TCGA-CD-8529    TCGA-CD-8530    TCGA-CD-8531    TCGA-CD-8532 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CD-8534    TCGA-CD-8535    TCGA-CD-A4MI    TCGA-CG-4437    TCGA-CG-4441 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-4449    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719    TCGA-CG-5720 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5724    TCGA-CG-5726    TCGA-CG-5727 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-CG-5728    TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-6520    TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-6526    TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822    TCGA-D7-8570    TCGA-D7-8572 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-8574    TCGA-D7-8576    TCGA-D7-A4YT    TCGA-D7-A4YU    TCGA-D7-A4YV 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-D7-A4Z0    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-FP-7735    TCGA-FP-7829    TCGA-FP-7998    TCGA-FP-8099    TCGA-FP-8209 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-HF-7132    TCGA-HF-7136    TCGA-HU-8243    TCGA-HU-8604    TCGA-HU-A4GD 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-HU-A4GN    TCGA-HU-A4GQ    TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 
   TCGA-IN-7806    TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663    TCGA-IP-7968 
"C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" "C1R WILD-TYPE" 

Clustering(24) Variable = CTNND1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNND1 MUTATED        1     11      0      0      1
  CTNND1 WILD-TYPE     56     86     22     35      8
D24V1, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              1               56
  CLUS_2             11               86
  CLUS_3              0               22
  CLUS_4              0               35
  CLUS_5              1                8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNND1 MUTATED        8      2      1
  CTNND1 WILD-TYPE     60     47     58
D24V2, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              8               60
  CLUS_2              2               47
  CLUS_3              1               58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNND1 MUTATED        6      2      5
  CTNND1 WILD-TYPE     57     66     62
D24V3, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              6               57
  CLUS_2              2               66
  CLUS_3              5               62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNND1 MUTATED        2      3      6      2
  CTNND1 WILD-TYPE     27     56     34     68
D24V4, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              3               56
  CLUS_3              6               34
  CLUS_4              2               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNND1 MUTATED        7      1      0      3      1
  CTNND1 WILD-TYPE     41     42     31     27     43
D24V5, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              7               41
  CLUS_2              1               42
  CLUS_3              0               31
  CLUS_4              3               27
  CLUS_5              1               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CTNND1 MUTATED        1      1      1      2      4      1      2
  CTNND1 WILD-TYPE     31     14     33     38     28     27     13
D24V6, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              1               14
  CLUS_3              1               33
  CLUS_4              2               38
  CLUS_5              4               28
  CLUS_6              1               27
  CLUS_7              2               13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNND1 MUTATED       10      2      1
  CTNND1 WILD-TYPE     92     73     43
D24V7, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1             10               92
  CLUS_2              2               73
  CLUS_3              1               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNND1 MUTATED        6      5      1      1
  CTNND1 WILD-TYPE     35     78     44     51
D24V8, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              6               35
  CLUS_2              5               78
  CLUS_3              1               44
  CLUS_4              1               51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTNND1 MUTATED        2      2      4      2      0      1
  CTNND1 WILD-TYPE     19      6     53     26     14     28
D24V9, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              2               19
  CLUS_2              2                6
  CLUS_3              4               53
  CLUS_4              2               26
  CLUS_5              0               14
  CLUS_6              1               28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNND1 MUTATED       10      1      0
  CTNND1 WILD-TYPE     89     36     21
D24V10, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1             10               89
  CLUS_2              1               36
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = MLXIPL MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLXIPL MUTATED        1      8      1      2      1
  MLXIPL WILD-TYPE     56     89     21     33      8
D25V1, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              1               56
  CLUS_2              8               89
  CLUS_3              1               21
  CLUS_4              2               33
  CLUS_5              1                8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLXIPL MUTATED        5      2      1
  MLXIPL WILD-TYPE     63     47     58
D25V2, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              5               63
  CLUS_2              2               47
  CLUS_3              1               58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLXIPL MUTATED        8      1      4
  MLXIPL WILD-TYPE     55     67     63
D25V3, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              8               55
  CLUS_2              1               67
  CLUS_3              4               63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLXIPL MUTATED        2      3      7      1
  MLXIPL WILD-TYPE     27     56     33     69
D25V4, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              2               27
  CLUS_2              3               56
  CLUS_3              7               33
  CLUS_4              1               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLXIPL MUTATED        7      1      2      0      2
  MLXIPL WILD-TYPE     41     42     29     30     42
D25V5, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              7               41
  CLUS_2              1               42
  CLUS_3              2               29
  CLUS_4              0               30
  CLUS_5              2               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLXIPL MUTATED        3      0      0      4      2      1      2
  MLXIPL WILD-TYPE     29     15     34     36     30     27     13
D25V6, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              3               29
  CLUS_2              0               15
  CLUS_3              0               34
  CLUS_4              4               36
  CLUS_5              2               30
  CLUS_6              1               27
  CLUS_7              2               13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLXIPL MUTATED       11      1      1
  MLXIPL WILD-TYPE     91     74     43
D25V7, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1             11               91
  CLUS_2              1               74
  CLUS_3              1               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLXIPL MUTATED        6      4      1      2
  MLXIPL WILD-TYPE     35     79     44     50
D25V8, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              6               35
  CLUS_2              4               79
  CLUS_3              1               44
  CLUS_4              2               50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLXIPL MUTATED        2      0      3      1      0      1
  MLXIPL WILD-TYPE     19      8     54     27     14     28
D25V9, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              2               19
  CLUS_2              0                8
  CLUS_3              3               54
  CLUS_4              1               27
  CLUS_5              0               14
  CLUS_6              1               28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLXIPL MUTATED        6      1      0
  MLXIPL WILD-TYPE     93     36     21
D25V10, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              6               93
  CLUS_2              1               36
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = MLL4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL4 MUTATED        1     15      1      2      1
  MLL4 WILD-TYPE     56     82     21     33      8
D26V1, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            1             56
  CLUS_2           15             82
  CLUS_3            1             21
  CLUS_4            2             33
  CLUS_5            1              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED       12      0      1
  MLL4 WILD-TYPE     56     49     58
D26V2, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1           12             56
  CLUS_2            0             49
  CLUS_3            1             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED        9      6      5
  MLL4 WILD-TYPE     54     62     62
D26V3, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            9             54
  CLUS_2            6             62
  CLUS_3            5             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED        3      3      9      5
  MLL4 WILD-TYPE     26     56     31     65
D26V4, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            3             26
  CLUS_2            3             56
  CLUS_3            9             31
  CLUS_4            5             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL4 MUTATED        8      2      2      4      1
  MLL4 WILD-TYPE     40     41     29     26     43
D26V5, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            8             40
  CLUS_2            2             41
  CLUS_3            2             29
  CLUS_4            4             26
  CLUS_5            1             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLL4 MUTATED        2      1      0      3      3      1      7
  MLL4 WILD-TYPE     30     14     34     37     29     27      8
D26V6, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            1             14
  CLUS_3            0             34
  CLUS_4            3             37
  CLUS_5            3             29
  CLUS_6            1             27
  CLUS_7            7              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED       15      3      2
  MLL4 WILD-TYPE     87     72     42
D26V7, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1           15             87
  CLUS_2            3             72
  CLUS_3            2             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED       10      6      1      3
  MLL4 WILD-TYPE     31     77     44     49
D26V8, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1           10             31
  CLUS_2            6             77
  CLUS_3            1             44
  CLUS_4            3             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLL4 MUTATED        1      0      6      2      0      1
  MLL4 WILD-TYPE     20      8     51     26     14     28
D26V9, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            1             20
  CLUS_2            0              8
  CLUS_3            6             51
  CLUS_4            2             26
  CLUS_5            0             14
  CLUS_6            1             28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED        8      0      2
  MLL4 WILD-TYPE     91     37     19
D26V10, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            8             91
  CLUS_2            0             37
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = NLK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLK MUTATED        1      4      0      0      0
  NLK WILD-TYPE     56     93     22     35      9
D27V1, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           1            56
  CLUS_2           4            93
  CLUS_3           0            22
  CLUS_4           0            35
  CLUS_5           0             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NLK MUTATED        3      1      0
  NLK WILD-TYPE     65     48     59
D27V2, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           3            65
  CLUS_2           1            48
  CLUS_3           0            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NLK MUTATED        3      0      2
  NLK WILD-TYPE     60     68     65
D27V3, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           3            60
  CLUS_2           0            68
  CLUS_3           2            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLK MUTATED        0      1      3      1
  NLK WILD-TYPE     29     58     37     69
D27V4, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           0            29
  CLUS_2           1            58
  CLUS_3           3            37
  CLUS_4           1            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLK MUTATED        3      0      1      0      1
  NLK WILD-TYPE     45     43     30     30     43
D27V5, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           3            45
  CLUS_2           0            43
  CLUS_3           1            30
  CLUS_4           0            30
  CLUS_5           1            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NLK MUTATED        1      0      0      1      1      1      1
  NLK WILD-TYPE     31     15     34     39     31     27     14
D27V6, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           1            31
  CLUS_2           0            15
  CLUS_3           0            34
  CLUS_4           1            39
  CLUS_5           1            31
  CLUS_6           1            27
  CLUS_7           1            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NLK MUTATED        4      0      1
  NLK WILD-TYPE     98     75     43
D27V7, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           4            98
  CLUS_2           0            75
  CLUS_3           1            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLK MUTATED        2      2      1      0
  NLK WILD-TYPE     39     81     44     52
D27V8, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           2            39
  CLUS_2           2            81
  CLUS_3           1            44
  CLUS_4           0            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NLK MUTATED        1      0      1      1      1      0
  NLK WILD-TYPE     20      8     56     27     13     29
D27V9, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           1            20
  CLUS_2           0             8
  CLUS_3           1            56
  CLUS_4           1            27
  CLUS_5           1            13
  CLUS_6           0            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NLK MUTATED        3      0      1
  NLK WILD-TYPE     96     37     20
D27V10, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           3            96
  CLUS_2           0            37
  CLUS_3           1            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
