Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	sig_genes.txt	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile.ai	Mutations-Significance_Analysis	Level_4	ai	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile_AF.ai	Mutations-Significance_Analysis	Level_4	ai	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP_coMut.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP_coMut.pdf	Mutations-Significance_Analysis	Level_4	pdf	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	patient_counts_and_rates.txt	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	TP53.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	PIK3CA.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CBWD1.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	KRAS.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ARID1A.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	PGM5.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	RHOA.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	SMAD4.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	IRF2.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	LARP4B.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	APC.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	FBXW7.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CDH1.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	HLA-B.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	BCOR.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	C13orf33.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CIC.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ACVR1B.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ZBTB20.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	C16orf74.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	MVK.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ERBB2.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CR1.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
sig_table	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	sig_genes.txt	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile.ai	Mutations-Significance_Analysis	Level_4	ai	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile_AF.ai	Mutations-Significance_Analysis	Level_4	ai	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP_coMut.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP_coMut.pdf	Mutations-Significance_Analysis	Level_4	pdf	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	patient_counts_and_rates.txt	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	TP53.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	PIK3CA.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CBWD1.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	KRAS.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ARID1A.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	PGM5.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	RHOA.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	SMAD4.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	IRF2.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	LARP4B.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	APC.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	FBXW7.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CDH1.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	HLA-B.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	BCOR.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	C13orf33.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CIC.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ACVR1B.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ZBTB20.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	C16orf74.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	MVK.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ERBB2.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CR1.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
mutsig_version	MutSig_version.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	sig_genes.txt	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile.ai	Mutations-Significance_Analysis	Level_4	ai	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile_AF.ai	Mutations-Significance_Analysis	Level_4	ai	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP_coMut.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP_coMut.pdf	Mutations-Significance_Analysis	Level_4	pdf	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	patient_counts_and_rates.txt	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	TP53.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	PIK3CA.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CBWD1.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	KRAS.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ARID1A.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	PGM5.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	RHOA.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	SMAD4.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	IRF2.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	LARP4B.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	APC.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	FBXW7.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CDH1.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	HLA-B.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	BCOR.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	C13orf33.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CIC.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ACVR1B.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ZBTB20.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	C16orf74.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	MVK.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ERBB2.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CR1.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_pdf	STAD-TP_coMut.pdf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	sig_genes.txt	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile.ai	Mutations-Significance_Analysis	Level_4	ai	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile_AF.ai	Mutations-Significance_Analysis	Level_4	ai	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP_coMut.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP_coMut.pdf	Mutations-Significance_Analysis	Level_4	pdf	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	patient_counts_and_rates.txt	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	TP53.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	PIK3CA.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CBWD1.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	KRAS.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ARID1A.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	PGM5.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	RHOA.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	SMAD4.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	IRF2.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	LARP4B.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	APC.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	FBXW7.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CDH1.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	HLA-B.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	BCOR.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	C13orf33.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CIC.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ACVR1B.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
lego_plotter_mut_profile_AF_png_path	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ZBTB20.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
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blacklist_path	pancan_mutation_blacklist.v14.hg19.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	FBXW7.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
blacklist_path	pancan_mutation_blacklist.v14.hg19.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CDH1.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
blacklist_path	pancan_mutation_blacklist.v14.hg19.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	HLA-B.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
blacklist_path	pancan_mutation_blacklist.v14.hg19.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	BCOR.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
blacklist_path	pancan_mutation_blacklist.v14.hg19.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	C13orf33.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
blacklist_path	pancan_mutation_blacklist.v14.hg19.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CIC.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
blacklist_path	pancan_mutation_blacklist.v14.hg19.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ACVR1B.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
blacklist_path	pancan_mutation_blacklist.v14.hg19.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ZBTB20.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
blacklist_path	pancan_mutation_blacklist.v14.hg19.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	C16orf74.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
blacklist_path	pancan_mutation_blacklist.v14.hg19.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	MVK.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
blacklist_path	pancan_mutation_blacklist.v14.hg19.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	ERBB2.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
blacklist_path	pancan_mutation_blacklist.v14.hg19.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CR1.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
blacklist_path	pancan_mutation_blacklist.v14.hg19.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
blacklist_path	pancan_mutation_blacklist.v14.hg19.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_png	STAD-TP_coMut.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	sig_genes.txt	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_png	STAD-TP_coMut.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_png	STAD-TP_coMut.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile.ai	Mutations-Significance_Analysis	Level_4	ai	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_png	STAD-TP_coMut.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile_AF.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_png	STAD-TP_coMut.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf.mutation_profile_AF.ai	Mutations-Significance_Analysis	Level_4	ai	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_png	STAD-TP_coMut.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP_coMut.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_png	STAD-TP_coMut.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP_coMut.pdf	Mutations-Significance_Analysis	Level_4	pdf	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_png	STAD-TP_coMut.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	patient_counts_and_rates.txt	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_png	STAD-TP_coMut.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	STAD-TP.final_analysis_set.maf	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
coMut_plot_png	STAD-TP_coMut.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	TP53.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
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coMut_plot_png	STAD-TP_coMut.png	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00412:47	MutSigNozzleReport2CV_2014101700	CBWD1.stick_fig.png	Mutations-Significance_Analysis	Level_4	png	gdac.broadinstitute.org_STAD-TP.MutSigNozzleReport2CV.Level_4.2014101700.0.0	yes
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