[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTTGCT-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/TGCT-TP/11589202/TGCT-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/TGCT-TP/11544840/transformed.cor.cli.txt"

nPatients in clinical file=150, in cluster file=150, common to both=150
[1]  47 150
[1] "AMP PEAK  1(1Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE 
                           69                            81 
  AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE 
                           69                            81 
[1] "AMP PEAK  2(2P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE 
                           62                            88 
  AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE 
                           62                            88 
[1] "AMP PEAK  3(3Q27.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE 
                           49                           101 
  AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE 
                           49                           101 
[1] "AMP PEAK  4(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE 
                         20                         130 
  AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE 
                         20                         130 
[1] "AMP PEAK  5(7P22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE 
                          126                            24 
  AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE 
                          126                            24 
[1] "AMP PEAK  6(7Q11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE 
                           120                             30 
  AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE 
                           120                             30 
[1] "AMP PEAK  7(8Q11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE 
                           122                             28 
  AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE 
                           122                             28 
[1] "AMP PEAK  8(8Q23.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE 
                          108                            42 
  AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE 
                          108                            42 
[1] "AMP PEAK  9(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE 
                            145                               5 
  AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE 
                            145                               5 
[1] "AMP PEAK 10(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE 
                           147                              3 
  AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE 
                           147                              3 
[1] "AMP PEAK 11(12P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE 
                            144                               6 
  AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE 
                            144                               6 
[1] "AMP PEAK 12(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE 
                         100                           50 
  AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE 
                         100                           50 
[1] "AMP PEAK 13(16Q21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE 
                          21                          129 
  AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE 
                          21                          129 
[1] "AMP PEAK 14(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE 
                             51                              99 
  AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE 
                             51                              99 
[1] "AMP PEAK 15(22Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE 
                             57                              93 
  AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE 
                             57                              93 
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            34                            116 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            34                            116 
[1] "DEL PEAK  2(1P31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           27                           123 
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           27                           123 
[1] "DEL PEAK  3(1Q42.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE 
                             9                            141 
  DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE 
                             9                            141 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           15                           135 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           15                           135 
[1] "DEL PEAK  5(3P26.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE 
                           41                           109 
  DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE 
                           41                           109 
[1] "DEL PEAK  6(4Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE 
                          110                            40 
  DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE 
                          110                            40 
[1] "DEL PEAK  7(5P15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE 
                          101                            49 
  DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE 
                          101                            49 
[1] "DEL PEAK  8(5P14.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE 
                          103                            47 
  DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE 
                          103                            47 
[1] "DEL PEAK  9(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE 
                          105                            45 
  DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE 
                          105                            45 
[1] "DEL PEAK 10(6P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE 
                           24                           126 
  DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE 
                           24                           126 
[1] "DEL PEAK 11(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         26                         124 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         26                         124 
[1] "DEL PEAK 12(7Q11.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE 
                             4                            146 
  DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE 
                             4                            146 
[1] "DEL PEAK 13(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                           15                           135 
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                           15                           135 
[1] "DEL PEAK 14(9P24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE 
                           70                            80 
  DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE 
                           70                            80 
[1] "DEL PEAK 15(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                         66                          84 
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                         66                          84 
[1] "DEL PEAK 16(9Q33.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE 
                           60                            90 
  DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE 
                           60                            90 
[1] "DEL PEAK 17(9Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE 
                           60                            90 
  DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE 
                           60                            90 
[1] "DEL PEAK 18(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                            84                             66 
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                            84                             66 
[1] "DEL PEAK 19(10Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE 
                            71                             79 
  DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE 
                            71                             79 
[1] "DEL PEAK 20(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE 
                            76                             74 
  DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE 
                            76                             74 
[1] "DEL PEAK 21(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                            94                             56 
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                            94                             56 
[1] "DEL PEAK 22(11P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE 
                          99                           51 
  DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE 
                          99                           51 
[1] "DEL PEAK 23(11Q12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE 
                           114                             36 
  DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE 
                           114                             36 
[1] "DEL PEAK 24(11Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE 
                           122                             28 
  DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE 
                           122                             28 
[1] "DEL PEAK 25(13Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE 
                         113                           37 
  DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE 
                         113                           37 
[1] "DEL PEAK 26(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                            66                             84 
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                            66                             84 
[1] "DEL PEAK 27(18P11.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE 
                            118                              32 
  DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE 
                            118                              32 
[1] "DEL PEAK 28(18Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE 
                           125                             25 
  DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE 
                           125                             25 
[1] "DEL PEAK 29(19Q13.41) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE 
                             58                              92 
  DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE 
                             58                              92 
[1] "DEL PEAK 30(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE 
                            29                            121 
  DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE 
                            29                            121 
[1] "DEL PEAK 31(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE 
                           28                           122 
  DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE 
                           28                           122 
[1] "DEL PEAK 32(XQ27.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE 
                           30                           120 
  DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE 
                           30                           120 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 150 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 150 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       16     21     32
  AMP PEAK  1(1Q21.2) WILD-TYPE     32     23     26
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          16                            32
  CLUS_2                          21                            23
  CLUS_3                          32                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       24     22     23
  AMP PEAK  1(1Q21.2) WILD-TYPE     32     27     22
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          24                            32
  CLUS_2                          22                            27
  CLUS_3                          23                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       31     18     20
  AMP PEAK  1(1Q21.2) WILD-TYPE     39     22     20
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          31                            39
  CLUS_2                          18                            22
  CLUS_3                          20                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.2) MUTATED       12     19      3     16      3     13
  AMP PEAK  1(1Q21.2) WILD-TYPE     31      8      9      8      5     10
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q21.2) MUTATED        3
  AMP PEAK  1(1Q21.2) WILD-TYPE     10
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          12                            31
  CLUS_2                          19                             8
  CLUS_3                           3                             9
  CLUS_4                          16                             8
  CLUS_5                           3                             5
  CLUS_6                          13                            10
  CLUS_7                           3                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q21.2) MUTATED        1      9     10     14
  AMP PEAK  1(1Q21.2) WILD-TYPE     11     12      6     11
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                           1                            11
  CLUS_2                           9                            12
  CLUS_3                          10                             6
  CLUS_4                          14                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       18      7      9
  AMP PEAK  1(1Q21.2) WILD-TYPE     26      8      6
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          18                            26
  CLUS_2                           7                             8
  CLUS_3                           9                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q21.2) MUTATED       10      7      7     10
  AMP PEAK  1(1Q21.2) WILD-TYPE     12      6     13      9
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          10                            12
  CLUS_2                           7                             6
  CLUS_3                           7                            13
  CLUS_4                          10                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.2) MUTATED        2      5      7      8      1      6
  AMP PEAK  1(1Q21.2) WILD-TYPE      9      3      8      3      4      7
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q21.2) MUTATED        5
  AMP PEAK  1(1Q21.2) WILD-TYPE      6
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                           5                             3
  CLUS_3                           7                             8
  CLUS_4                           8                             3
  CLUS_5                           1                             4
  CLUS_6                           6                             7
  CLUS_7                           5                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(2P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P24.1) MUTATED       12     17     33
  AMP PEAK  2(2P24.1) WILD-TYPE     36     27     25
D2V1, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          12                            36
  CLUS_2                          17                            27
  CLUS_3                          33                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P24.1) MUTATED       14     20     28
  AMP PEAK  2(2P24.1) WILD-TYPE     42     29     17
D2V2, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          14                            42
  CLUS_2                          20                            29
  CLUS_3                          28                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P24.1) MUTATED       23     15     24
  AMP PEAK  2(2P24.1) WILD-TYPE     47     25     16
D2V3, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          23                            47
  CLUS_2                          15                            25
  CLUS_3                          24                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2P24.1) MUTATED       10     13      6     14      2      9
  AMP PEAK  2(2P24.1) WILD-TYPE     33     14      6     10      6     14
                               vv
clus                            CLUS_7
  AMP PEAK  2(2P24.1) MUTATED        8
  AMP PEAK  2(2P24.1) WILD-TYPE      5
D2V4, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          10                            33
  CLUS_2                          13                            14
  CLUS_3                           6                             6
  CLUS_4                          14                            10
  CLUS_5                           2                             6
  CLUS_6                           9                            14
  CLUS_7                           8                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P24.1) MUTATED        2      7      9      8
  AMP PEAK  2(2P24.1) WILD-TYPE     10     14      7     17
D2V5, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                           2                            10
  CLUS_2                           7                            14
  CLUS_3                           9                             7
  CLUS_4                           8                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P24.1) MUTATED       12      6      8
  AMP PEAK  2(2P24.1) WILD-TYPE     32      9      7
D2V6, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          12                            32
  CLUS_2                           6                             9
  CLUS_3                           8                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P24.1) MUTATED        7      5      4     10
  AMP PEAK  2(2P24.1) WILD-TYPE     15      8     16      9
D2V7, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                           7                            15
  CLUS_2                           5                             8
  CLUS_3                           4                            16
  CLUS_4                          10                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2P24.1) MUTATED        2      3      6      7      1      5
  AMP PEAK  2(2P24.1) WILD-TYPE      9      5      9      4      4      8
                               vv
clus                            CLUS_7
  AMP PEAK  2(2P24.1) MUTATED        2
  AMP PEAK  2(2P24.1) WILD-TYPE      9
D2V8, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                           3                             5
  CLUS_3                           6                             9
  CLUS_4                           7                             4
  CLUS_5                           1                             4
  CLUS_6                           5                             8
  CLUS_7                           2                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3Q27.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q27.3) MUTATED       11     13     25
  AMP PEAK  3(3Q27.3) WILD-TYPE     37     31     33
D3V1, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                          11                            37
  CLUS_2                          13                            31
  CLUS_3                          25                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q27.3) MUTATED       13     21     15
  AMP PEAK  3(3Q27.3) WILD-TYPE     43     28     30
D3V2, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                          13                            43
  CLUS_2                          21                            28
  CLUS_3                          15                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q27.3) MUTATED       13     18     18
  AMP PEAK  3(3Q27.3) WILD-TYPE     57     22     22
D3V3, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                          13                            57
  CLUS_2                          18                            22
  CLUS_3                          18                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q27.3) MUTATED        5      8      6      9      4     10
  AMP PEAK  3(3Q27.3) WILD-TYPE     38     19      6     15      4     13
                               vv
clus                            CLUS_7
  AMP PEAK  3(3Q27.3) MUTATED        7
  AMP PEAK  3(3Q27.3) WILD-TYPE      6
D3V4, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           5                            38
  CLUS_2                           8                            19
  CLUS_3                           6                             6
  CLUS_4                           9                            15
  CLUS_5                           4                             4
  CLUS_6                          10                            13
  CLUS_7                           7                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q27.3) MUTATED        1      8      7      6
  AMP PEAK  3(3Q27.3) WILD-TYPE     11     13      9     19
D3V5, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           1                            11
  CLUS_2                           8                            13
  CLUS_3                           7                             9
  CLUS_4                           6                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q27.3) MUTATED       10      5      7
  AMP PEAK  3(3Q27.3) WILD-TYPE     34     10      8
D3V6, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                          10                            34
  CLUS_2                           5                            10
  CLUS_3                           7                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q27.3) MUTATED        5      4      4      9
  AMP PEAK  3(3Q27.3) WILD-TYPE     17      9     16     10
D3V7, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           5                            17
  CLUS_2                           4                             9
  CLUS_3                           4                            16
  CLUS_4                           9                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q27.3) MUTATED        2      4      5      6      1      3
  AMP PEAK  3(3Q27.3) WILD-TYPE      9      4     10      5      4     10
                               vv
clus                            CLUS_7
  AMP PEAK  3(3Q27.3) MUTATED        1
  AMP PEAK  3(3Q27.3) WILD-TYPE     10
D3V8, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                           4                             4
  CLUS_3                           5                            10
  CLUS_4                           6                             5
  CLUS_5                           1                             4
  CLUS_6                           3                            10
  CLUS_7                           1                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q12) MUTATED        3     12      5
  AMP PEAK  4(4Q12) WILD-TYPE     45     32     53
D4V1, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         3                          45
  CLUS_2                        12                          32
  CLUS_3                         5                          53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q12) MUTATED        9      5      6
  AMP PEAK  4(4Q12) WILD-TYPE     47     44     39
D4V2, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         9                          47
  CLUS_2                         5                          44
  CLUS_3                         6                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q12) MUTATED       12      5      3
  AMP PEAK  4(4Q12) WILD-TYPE     58     35     37
D4V3, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                        12                          58
  CLUS_2                         5                          35
  CLUS_3                         3                          37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  4(4Q12) MUTATED        5      7      0      2      1      4      1
  AMP PEAK  4(4Q12) WILD-TYPE     38     20     12     22      7     19     12
D4V4, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         5                          38
  CLUS_2                         7                          20
  CLUS_3                         0                          12
  CLUS_4                         2                          22
  CLUS_5                         1                           7
  CLUS_6                         4                          19
  CLUS_7                         1                          12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4Q12) MUTATED        2      3      1      3
  AMP PEAK  4(4Q12) WILD-TYPE     10     18     15     22
D4V5, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         2                          10
  CLUS_2                         3                          18
  CLUS_3                         1                          15
  CLUS_4                         3                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q12) MUTATED        7      1      1
  AMP PEAK  4(4Q12) WILD-TYPE     37     14     14
D4V6, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         7                          37
  CLUS_2                         1                          14
  CLUS_3                         1                          14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4Q12) MUTATED        6      1      1      1
  AMP PEAK  4(4Q12) WILD-TYPE     16     12     19     18
D4V7, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         6                          16
  CLUS_2                         1                          12
  CLUS_3                         1                          19
  CLUS_4                         1                          18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  4(4Q12) MUTATED        3      1      1      1      0      3      0
  AMP PEAK  4(4Q12) WILD-TYPE      8      7     14     10      5     10     11
D4V8, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         3                           8
  CLUS_2                         1                           7
  CLUS_3                         1                          14
  CLUS_4                         1                          10
  CLUS_5                         0                           5
  CLUS_6                         3                          10
  CLUS_7                         0                          11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(7P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P22.1) MUTATED       37     41     48
  AMP PEAK  5(7P22.1) WILD-TYPE     11      3     10
D5V1, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          37                            11
  CLUS_2                          41                             3
  CLUS_3                          48                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P22.1) MUTATED       49     44     33
  AMP PEAK  5(7P22.1) WILD-TYPE      7      5     12
D5V2, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          49                             7
  CLUS_2                          44                             5
  CLUS_3                          33                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P22.1) MUTATED       62     36     28
  AMP PEAK  5(7P22.1) WILD-TYPE      8      4     12
D5V3, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          62                             8
  CLUS_2                          36                             4
  CLUS_3                          28                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(7P22.1) MUTATED       39     23      9     17      7     22
  AMP PEAK  5(7P22.1) WILD-TYPE      4      4      3      7      1      1
                               vv
clus                            CLUS_7
  AMP PEAK  5(7P22.1) MUTATED        9
  AMP PEAK  5(7P22.1) WILD-TYPE      4
D5V4, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          39                             4
  CLUS_2                          23                             4
  CLUS_3                           9                             3
  CLUS_4                          17                             7
  CLUS_5                           7                             1
  CLUS_6                          22                             1
  CLUS_7                           9                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(7P22.1) MUTATED       10     21     11     21
  AMP PEAK  5(7P22.1) WILD-TYPE      2      0      5      4
D5V5, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          10                             2
  CLUS_2                          21                             0
  CLUS_3                          11                             5
  CLUS_4                          21                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P22.1) MUTATED       38     15     10
  AMP PEAK  5(7P22.1) WILD-TYPE      6      0      5
D5V6, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          38                             6
  CLUS_2                          15                             0
  CLUS_3                          10                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(7P22.1) MUTATED       18     13     18     14
  AMP PEAK  5(7P22.1) WILD-TYPE      4      0      2      5
D5V7, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          18                             4
  CLUS_2                          13                             0
  CLUS_3                          18                             2
  CLUS_4                          14                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(7P22.1) MUTATED       10      7     15      8      3     10
  AMP PEAK  5(7P22.1) WILD-TYPE      1      1      0      3      2      3
                               vv
clus                            CLUS_7
  AMP PEAK  5(7P22.1) MUTATED       10
  AMP PEAK  5(7P22.1) WILD-TYPE      1
D5V8, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          10                             1
  CLUS_2                           7                             1
  CLUS_3                          15                             0
  CLUS_4                           8                             3
  CLUS_5                           3                             2
  CLUS_6                          10                             3
  CLUS_7                          10                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(7Q11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q11.22) MUTATED       35     43     42
  AMP PEAK  6(7Q11.22) WILD-TYPE     13      1     16
D6V1, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           35                             13
  CLUS_2                           43                              1
  CLUS_3                           42                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q11.22) MUTATED       48     42     30
  AMP PEAK  6(7Q11.22) WILD-TYPE      8      7     15
D6V2, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           48                              8
  CLUS_2                           42                              7
  CLUS_3                           30                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q11.22) MUTATED       63     35     22
  AMP PEAK  6(7Q11.22) WILD-TYPE      7      5     18
D6V3, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           63                              7
  CLUS_2                           35                              5
  CLUS_3                           22                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7Q11.22) MUTATED       39     24      8     14      7     21
  AMP PEAK  6(7Q11.22) WILD-TYPE      4      3      4     10      1      2
                                vv
clus                             CLUS_7
  AMP PEAK  6(7Q11.22) MUTATED        7
  AMP PEAK  6(7Q11.22) WILD-TYPE      6
D6V4, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           39                              4
  CLUS_2                           24                              3
  CLUS_3                            8                              4
  CLUS_4                           14                             10
  CLUS_5                            7                              1
  CLUS_6                           21                              2
  CLUS_7                            7                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7Q11.22) MUTATED       10     19      8     22
  AMP PEAK  6(7Q11.22) WILD-TYPE      2      2      8      3
D6V5, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           10                              2
  CLUS_2                           19                              2
  CLUS_3                            8                              8
  CLUS_4                           22                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q11.22) MUTATED       39     13      7
  AMP PEAK  6(7Q11.22) WILD-TYPE      5      2      8
D6V6, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           39                              5
  CLUS_2                           13                              2
  CLUS_3                            7                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7Q11.22) MUTATED       19     12     18     10
  AMP PEAK  6(7Q11.22) WILD-TYPE      3      1      2      9
D6V7, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           19                              3
  CLUS_2                           12                              1
  CLUS_3                           18                              2
  CLUS_4                           10                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7Q11.22) MUTATED       10      8     13      5      3     10
  AMP PEAK  6(7Q11.22) WILD-TYPE      1      0      2      6      2      3
                                vv
clus                             CLUS_7
  AMP PEAK  6(7Q11.22) MUTATED       10
  AMP PEAK  6(7Q11.22) WILD-TYPE      1
D6V8, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           10                              1
  CLUS_2                            8                              0
  CLUS_3                           13                              2
  CLUS_4                            5                              6
  CLUS_5                            3                              2
  CLUS_6                           10                              3
  CLUS_7                           10                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(8Q11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q11.23) MUTATED       35     44     43
  AMP PEAK  7(8Q11.23) WILD-TYPE     13      0     15
D7V1, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                           35                             13
  CLUS_2                           44                              0
  CLUS_3                           43                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q11.23) MUTATED       52     38     32
  AMP PEAK  7(8Q11.23) WILD-TYPE      4     11     13
D7V2, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                           52                              4
  CLUS_2                           38                             11
  CLUS_3                           32                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q11.23) MUTATED       67     31     24
  AMP PEAK  7(8Q11.23) WILD-TYPE      3      9     16
D7V3, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                           67                              3
  CLUS_2                           31                              9
  CLUS_3                           24                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8Q11.23) MUTATED       40     27      8     18      6     19
  AMP PEAK  7(8Q11.23) WILD-TYPE      3      0      4      6      2      4
                                vv
clus                             CLUS_7
  AMP PEAK  7(8Q11.23) MUTATED        4
  AMP PEAK  7(8Q11.23) WILD-TYPE      9
D7V4, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                           40                              3
  CLUS_2                           27                              0
  CLUS_3                            8                              4
  CLUS_4                           18                              6
  CLUS_5                            6                              2
  CLUS_6                           19                              4
  CLUS_7                            4                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8Q11.23) MUTATED        9     18     11     25
  AMP PEAK  7(8Q11.23) WILD-TYPE      3      3      5      0
D7V5, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                            9                              3
  CLUS_2                           18                              3
  CLUS_3                           11                              5
  CLUS_4                           25                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q11.23) MUTATED       41     12     10
  AMP PEAK  7(8Q11.23) WILD-TYPE      3      3      5
D7V6, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                           41                              3
  CLUS_2                           12                              3
  CLUS_3                           10                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8Q11.23) MUTATED       22     11     17     13
  AMP PEAK  7(8Q11.23) WILD-TYPE      0      2      3      6
D7V7, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                           22                              0
  CLUS_2                           11                              2
  CLUS_3                           17                              3
  CLUS_4                           13                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8Q11.23) MUTATED        9      8     13      7      3     13
  AMP PEAK  7(8Q11.23) WILD-TYPE      2      0      2      4      2      0
                                vv
clus                             CLUS_7
  AMP PEAK  7(8Q11.23) MUTATED       10
  AMP PEAK  7(8Q11.23) WILD-TYPE      1
D7V8, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                            9                              2
  CLUS_2                            8                              0
  CLUS_3                           13                              2
  CLUS_4                            7                              4
  CLUS_5                            3                              2
  CLUS_6                           13                              0
  CLUS_7                           10                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(8Q23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q23.3) MUTATED       34     36     38
  AMP PEAK  8(8Q23.3) WILD-TYPE     14      8     20
D8V1, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                          34                            14
  CLUS_2                          36                             8
  CLUS_3                          38                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q23.3) MUTATED       48     35     25
  AMP PEAK  8(8Q23.3) WILD-TYPE      8     14     20
D8V2, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                          48                             8
  CLUS_2                          35                            14
  CLUS_3                          25                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q23.3) MUTATED       60     28     20
  AMP PEAK  8(8Q23.3) WILD-TYPE     10     12     20
D8V3, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                          60                            10
  CLUS_2                          28                            12
  CLUS_3                          20                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8Q23.3) MUTATED       38     22      9     15      5     16
  AMP PEAK  8(8Q23.3) WILD-TYPE      5      5      3      9      3      7
                               vv
clus                            CLUS_7
  AMP PEAK  8(8Q23.3) MUTATED        3
  AMP PEAK  8(8Q23.3) WILD-TYPE     10
D8V4, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                          38                             5
  CLUS_2                          22                             5
  CLUS_3                           9                             3
  CLUS_4                          15                             9
  CLUS_5                           5                             3
  CLUS_6                          16                             7
  CLUS_7                           3                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q23.3) MUTATED        9     17      7     23
  AMP PEAK  8(8Q23.3) WILD-TYPE      3      4      9      2
D8V5, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                           9                             3
  CLUS_2                          17                             4
  CLUS_3                           7                             9
  CLUS_4                          23                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q23.3) MUTATED       37     12      7
  AMP PEAK  8(8Q23.3) WILD-TYPE      7      3      8
D8V6, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                          37                             7
  CLUS_2                          12                             3
  CLUS_3                           7                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q23.3) MUTATED       20      8     17     11
  AMP PEAK  8(8Q23.3) WILD-TYPE      2      5      3      8
D8V7, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                          20                             2
  CLUS_2                           8                             5
  CLUS_3                          17                             3
  CLUS_4                          11                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8Q23.3) MUTATED        9      6     11      5      3     12
  AMP PEAK  8(8Q23.3) WILD-TYPE      2      2      4      6      2      1
                               vv
clus                            CLUS_7
  AMP PEAK  8(8Q23.3) MUTATED       10
  AMP PEAK  8(8Q23.3) WILD-TYPE      1
D8V8, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                           9                             2
  CLUS_2                           6                             2
  CLUS_3                          11                             4
  CLUS_4                           5                             6
  CLUS_5                           3                             2
  CLUS_6                          12                             1
  CLUS_7                          10                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12P13.33) MUTATED       44     43     58
  AMP PEAK  9(12P13.33) WILD-TYPE      4      1      0
D9V1, multiclass
        clus
vv       AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE
  CLUS_1                            44                               4
  CLUS_2                            43                               1
  CLUS_3                            58                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12P13.33) MUTATED       52     49     44
  AMP PEAK  9(12P13.33) WILD-TYPE      4      0      1
D9V2, multiclass
        clus
vv       AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE
  CLUS_1                            52                               4
  CLUS_2                            49                               0
  CLUS_3                            44                               1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12P13.33) MUTATED       65     40     40
  AMP PEAK  9(12P13.33) WILD-TYPE      5      0      0
D9V3, multiclass
        clus
vv       AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE
  CLUS_1                            65                               5
  CLUS_2                            40                               0
  CLUS_3                            40                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(12P13.33) MUTATED       40     25     12     24      8     23
  AMP PEAK  9(12P13.33) WILD-TYPE      3      2      0      0      0      0
                                 vv
clus                              CLUS_7
  AMP PEAK  9(12P13.33) MUTATED       13
  AMP PEAK  9(12P13.33) WILD-TYPE      0
D9V4, multiclass
        clus
vv       AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE
  CLUS_1                            40                               3
  CLUS_2                            25                               2
  CLUS_3                            12                               0
  CLUS_4                            24                               0
  CLUS_5                             8                               0
  CLUS_6                            23                               0
  CLUS_7                            13                               0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(12P13.33) MUTATED       10     21     16     25
  AMP PEAK  9(12P13.33) WILD-TYPE      2      0      0      0
D9V5, multiclass
[1] "Remove cluster labels:"          "AMP PEAK  9(12P13.33) WILD-TYPE"
clus
  AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE 
                             72                               2 
                   TCGA-2G-AAFE                    TCGA-2G-AAFG 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAFN                    TCGA-2G-AAFO 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAG6                    TCGA-2G-AAG7 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAGG                    TCGA-2G-AAGI 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAGO                    TCGA-2G-AAGP 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAGS                    TCGA-2G-AAGZ 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAH0                    TCGA-2G-AAHC 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAHG                    TCGA-2G-AAHL 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAKG                    TCGA-2G-AAKH 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAL7                    TCGA-2G-AALF 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AALS                    TCGA-2G-AALT 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAM4                    TCGA-2X-A9D5 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-S6-A8JX                    TCGA-SB-A6J6 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-SB-A76C                    TCGA-SN-A6IS 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-SN-A84W                    TCGA-SN-A84X 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-SN-A84Y                    TCGA-VF-A8A9 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-VF-A8AA                    TCGA-VF-A8AB 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-VF-A8AC                    TCGA-VF-A8AD 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-VF-A8AE                    TCGA-W4-A7U4 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-WZ-A7V3                    TCGA-WZ-A7V4 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-WZ-A7V5                    TCGA-WZ-A8D5 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-X3-A8G4                    TCGA-XE-A8H5 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-A9SE                    TCGA-XE-AANI 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AANJ                    TCGA-XE-AANR 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AANV                    TCGA-XE-AAO6 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AAOB                    TCGA-XE-AAOC 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AAOD                    TCGA-XE-AAOF 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AAOJ                    TCGA-XY-A89B 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XY-A8S2                    TCGA-XY-A8S3 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XY-A9T9                    TCGA-YU-A90Q 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-YU-A90W                    TCGA-YU-A90Y 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-YU-A912                    TCGA-YU-A94D 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-YU-A94I                    TCGA-YU-AA61 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-ZM-AA05                    TCGA-ZM-AA06 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-ZM-AA0B                    TCGA-ZM-AA0E 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-ZM-AA0F                    TCGA-ZM-AA0H 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12P13.33) MUTATED       42     15     15
  AMP PEAK  9(12P13.33) WILD-TYPE      2      0      0
D9V6, multiclass
[1] "Remove cluster labels:"          "AMP PEAK  9(12P13.33) WILD-TYPE"
clus
  AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE 
                             72                               2 
                   TCGA-2G-AAFE                    TCGA-2G-AAFG 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAFN                    TCGA-2G-AAFO 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAG6                    TCGA-2G-AAG7 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAGG                    TCGA-2G-AAGI 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAGO                    TCGA-2G-AAGP 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAGS                    TCGA-2G-AAGZ 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAH0                    TCGA-2G-AAHC 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAHG                    TCGA-2G-AAHL 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAKG                    TCGA-2G-AAKH 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAL7                    TCGA-2G-AALF 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AALS                    TCGA-2G-AALT 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAM4                    TCGA-2X-A9D5 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-S6-A8JX                    TCGA-SB-A6J6 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-SB-A76C                    TCGA-SN-A6IS 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-SN-A84W                    TCGA-SN-A84X 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-SN-A84Y                    TCGA-VF-A8A9 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-VF-A8AA                    TCGA-VF-A8AB 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-VF-A8AC                    TCGA-VF-A8AD 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-VF-A8AE                    TCGA-W4-A7U4 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-WZ-A7V3                    TCGA-WZ-A7V4 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-WZ-A7V5                    TCGA-WZ-A8D5 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-X3-A8G4                    TCGA-XE-A8H5 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-A9SE                    TCGA-XE-AANI 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AANJ                    TCGA-XE-AANR 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AANV                    TCGA-XE-AAO6 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AAOB                    TCGA-XE-AAOC 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AAOD                    TCGA-XE-AAOF 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AAOJ                    TCGA-XY-A89B 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XY-A8S2                    TCGA-XY-A8S3 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XY-A9T9                    TCGA-YU-A90Q 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-YU-A90W                    TCGA-YU-A90Y 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-YU-A912                    TCGA-YU-A94D 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-YU-A94I                    TCGA-YU-AA61 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-ZM-AA05                    TCGA-ZM-AA06 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-ZM-AA0B                    TCGA-ZM-AA0E 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-ZM-AA0F                    TCGA-ZM-AA0H 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(12P13.33) MUTATED       22     13     18     19
  AMP PEAK  9(12P13.33) WILD-TYPE      0      0      2      0
D9V7, multiclass
[1] "Remove cluster labels:"          "AMP PEAK  9(12P13.33) WILD-TYPE"
clus
  AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE 
                             72                               2 
                   TCGA-2G-AAFE                    TCGA-2G-AAFG 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAFN                    TCGA-2G-AAFO 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAG6                    TCGA-2G-AAG7 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAGG                    TCGA-2G-AAGI 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAGO                    TCGA-2G-AAGP 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAGS                    TCGA-2G-AAGZ 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAH0                    TCGA-2G-AAHC 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAHG                    TCGA-2G-AAHL 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAKG                    TCGA-2G-AAKH 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAL7                    TCGA-2G-AALF 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AALS                    TCGA-2G-AALT 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAM4                    TCGA-2X-A9D5 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-S6-A8JX                    TCGA-SB-A6J6 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-SB-A76C                    TCGA-SN-A6IS 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-SN-A84W                    TCGA-SN-A84X 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-SN-A84Y                    TCGA-VF-A8A9 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-VF-A8AA                    TCGA-VF-A8AB 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-VF-A8AC                    TCGA-VF-A8AD 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-VF-A8AE                    TCGA-W4-A7U4 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-WZ-A7V3                    TCGA-WZ-A7V4 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-WZ-A7V5                    TCGA-WZ-A8D5 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-X3-A8G4                    TCGA-XE-A8H5 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-A9SE                    TCGA-XE-AANI 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AANJ                    TCGA-XE-AANR 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AANV                    TCGA-XE-AAO6 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AAOB                    TCGA-XE-AAOC 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AAOD                    TCGA-XE-AAOF 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AAOJ                    TCGA-XY-A89B 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XY-A8S2                    TCGA-XY-A8S3 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XY-A9T9                    TCGA-YU-A90Q 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-YU-A90W                    TCGA-YU-A90Y 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-YU-A912                    TCGA-YU-A94D 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-YU-A94I                    TCGA-YU-AA61 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-ZM-AA05                    TCGA-ZM-AA06 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-ZM-AA0B                    TCGA-ZM-AA0E 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-ZM-AA0F                    TCGA-ZM-AA0H 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(12P13.33) MUTATED       10      8     15     11      5     13
  AMP PEAK  9(12P13.33) WILD-TYPE      1      0      0      0      0      0
                                 vv
clus                              CLUS_7
  AMP PEAK  9(12P13.33) MUTATED       10
  AMP PEAK  9(12P13.33) WILD-TYPE      1
D9V8, multiclass
[1] "Remove cluster labels:"          "AMP PEAK  9(12P13.33) WILD-TYPE"
clus
  AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE 
                             72                               2 
                   TCGA-2G-AAFE                    TCGA-2G-AAFG 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAFN                    TCGA-2G-AAFO 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAG6                    TCGA-2G-AAG7 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAGG                    TCGA-2G-AAGI 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAGO                    TCGA-2G-AAGP 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAGS                    TCGA-2G-AAGZ 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAH0                    TCGA-2G-AAHC 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAHG                    TCGA-2G-AAHL 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAKG                    TCGA-2G-AAKH 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAL7                    TCGA-2G-AALF 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AALS                    TCGA-2G-AALT 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-2G-AAM4                    TCGA-2X-A9D5 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-S6-A8JX                    TCGA-SB-A6J6 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-SB-A76C                    TCGA-SN-A6IS 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-SN-A84W                    TCGA-SN-A84X 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-SN-A84Y                    TCGA-VF-A8A9 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-VF-A8AA                    TCGA-VF-A8AB 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-VF-A8AC                    TCGA-VF-A8AD 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-VF-A8AE                    TCGA-W4-A7U4 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-WZ-A7V3                    TCGA-WZ-A7V4 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-WZ-A7V5                    TCGA-WZ-A8D5 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-X3-A8G4                    TCGA-XE-A8H5 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-A9SE                    TCGA-XE-AANI 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AANJ                    TCGA-XE-AANR 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AANV                    TCGA-XE-AAO6 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AAOB                    TCGA-XE-AAOC 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AAOD                    TCGA-XE-AAOF 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XE-AAOJ                    TCGA-XY-A89B 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XY-A8S2                    TCGA-XY-A8S3 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-XY-A9T9                    TCGA-YU-A90Q 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-YU-A90W                    TCGA-YU-A90Y 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-YU-A912                    TCGA-YU-A94D 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-YU-A94I                    TCGA-YU-AA61 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-ZM-AA05                    TCGA-ZM-AA06 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-ZM-AA0B                    TCGA-ZM-AA0E 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 
                   TCGA-ZM-AA0F                    TCGA-ZM-AA0H 
"AMP PEAK  9(12P13.33) MUTATED" "AMP PEAK  9(12P13.33) MUTATED" 

Clustering(10) Variable = AMP PEAK 10(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P12.1) MUTATED       45     44     58
  AMP PEAK 10(12P12.1) WILD-TYPE      3      0      0
D10V1, multiclass
        clus
vv       AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE
  CLUS_1                           45                              3
  CLUS_2                           44                              0
  CLUS_3                           58                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P12.1) MUTATED       53     49     45
  AMP PEAK 10(12P12.1) WILD-TYPE      3      0      0
D10V2, multiclass
        clus
vv       AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE
  CLUS_1                           53                              3
  CLUS_2                           49                              0
  CLUS_3                           45                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P12.1) MUTATED       67     40     40
  AMP PEAK 10(12P12.1) WILD-TYPE      3      0      0
D10V3, multiclass
        clus
vv       AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE
  CLUS_1                           67                              3
  CLUS_2                           40                              0
  CLUS_3                           40                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(12P12.1) MUTATED       40     27     12     24      8     23
  AMP PEAK 10(12P12.1) WILD-TYPE      3      0      0      0      0      0
                                vv
clus                             CLUS_7
  AMP PEAK 10(12P12.1) MUTATED       13
  AMP PEAK 10(12P12.1) WILD-TYPE      0
D10V4, multiclass
        clus
vv       AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE
  CLUS_1                           40                              3
  CLUS_2                           27                              0
  CLUS_3                           12                              0
  CLUS_4                           24                              0
  CLUS_5                            8                              0
  CLUS_6                           23                              0
  CLUS_7                           13                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12P12.1) MUTATED       10     21     16     25
  AMP PEAK 10(12P12.1) WILD-TYPE      2      0      0      0
D10V5, multiclass
[1] "Remove cluster labels:"         "AMP PEAK 10(12P12.1) WILD-TYPE"
clus
  AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE 
                            72                              2 
                  TCGA-2G-AAFE                   TCGA-2G-AAFG 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAFN                   TCGA-2G-AAFO 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAG6                   TCGA-2G-AAG7 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAGG                   TCGA-2G-AAGI 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAGO                   TCGA-2G-AAGP 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAGS                   TCGA-2G-AAGZ 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAH0                   TCGA-2G-AAHC 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAHG                   TCGA-2G-AAHL 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAKG                   TCGA-2G-AAKH 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAL7                   TCGA-2G-AALF 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AALS                   TCGA-2G-AALT 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAM4                   TCGA-2X-A9D5 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-S6-A8JX                   TCGA-SB-A6J6 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-SB-A76C                   TCGA-SN-A6IS 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-SN-A84W                   TCGA-SN-A84X 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-SN-A84Y                   TCGA-VF-A8A9 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-VF-A8AA                   TCGA-VF-A8AB 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-VF-A8AC                   TCGA-VF-A8AD 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-VF-A8AE                   TCGA-W4-A7U4 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-WZ-A7V3                   TCGA-WZ-A7V4 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-WZ-A7V5                   TCGA-WZ-A8D5 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-X3-A8G4                   TCGA-XE-A8H5 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-A9SE                   TCGA-XE-AANI 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AANJ                   TCGA-XE-AANR 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AANV                   TCGA-XE-AAO6 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AAOB                   TCGA-XE-AAOC 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AAOD                   TCGA-XE-AAOF 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AAOJ                   TCGA-XY-A89B 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XY-A8S2                   TCGA-XY-A8S3 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XY-A9T9                   TCGA-YU-A90Q 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-YU-A90W                   TCGA-YU-A90Y 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-YU-A912                   TCGA-YU-A94D 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-YU-A94I                   TCGA-YU-AA61 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-ZM-AA05                   TCGA-ZM-AA06 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-ZM-AA0B                   TCGA-ZM-AA0E 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-ZM-AA0F                   TCGA-ZM-AA0H 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P12.1) MUTATED       42     15     15
  AMP PEAK 10(12P12.1) WILD-TYPE      2      0      0
D10V6, multiclass
[1] "Remove cluster labels:"         "AMP PEAK 10(12P12.1) WILD-TYPE"
clus
  AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE 
                            72                              2 
                  TCGA-2G-AAFE                   TCGA-2G-AAFG 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAFN                   TCGA-2G-AAFO 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAG6                   TCGA-2G-AAG7 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAGG                   TCGA-2G-AAGI 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAGO                   TCGA-2G-AAGP 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAGS                   TCGA-2G-AAGZ 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAH0                   TCGA-2G-AAHC 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAHG                   TCGA-2G-AAHL 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAKG                   TCGA-2G-AAKH 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAL7                   TCGA-2G-AALF 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AALS                   TCGA-2G-AALT 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAM4                   TCGA-2X-A9D5 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-S6-A8JX                   TCGA-SB-A6J6 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-SB-A76C                   TCGA-SN-A6IS 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-SN-A84W                   TCGA-SN-A84X 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-SN-A84Y                   TCGA-VF-A8A9 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-VF-A8AA                   TCGA-VF-A8AB 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-VF-A8AC                   TCGA-VF-A8AD 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-VF-A8AE                   TCGA-W4-A7U4 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-WZ-A7V3                   TCGA-WZ-A7V4 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-WZ-A7V5                   TCGA-WZ-A8D5 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-X3-A8G4                   TCGA-XE-A8H5 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-A9SE                   TCGA-XE-AANI 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AANJ                   TCGA-XE-AANR 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AANV                   TCGA-XE-AAO6 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AAOB                   TCGA-XE-AAOC 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AAOD                   TCGA-XE-AAOF 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AAOJ                   TCGA-XY-A89B 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XY-A8S2                   TCGA-XY-A8S3 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XY-A9T9                   TCGA-YU-A90Q 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-YU-A90W                   TCGA-YU-A90Y 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-YU-A912                   TCGA-YU-A94D 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-YU-A94I                   TCGA-YU-AA61 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-ZM-AA05                   TCGA-ZM-AA06 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-ZM-AA0B                   TCGA-ZM-AA0E 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-ZM-AA0F                   TCGA-ZM-AA0H 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12P12.1) MUTATED       22     13     18     19
  AMP PEAK 10(12P12.1) WILD-TYPE      0      0      2      0
D10V7, multiclass
[1] "Remove cluster labels:"         "AMP PEAK 10(12P12.1) WILD-TYPE"
clus
  AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE 
                            72                              2 
                  TCGA-2G-AAFE                   TCGA-2G-AAFG 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAFN                   TCGA-2G-AAFO 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAG6                   TCGA-2G-AAG7 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAGG                   TCGA-2G-AAGI 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAGO                   TCGA-2G-AAGP 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAGS                   TCGA-2G-AAGZ 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAH0                   TCGA-2G-AAHC 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAHG                   TCGA-2G-AAHL 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAKG                   TCGA-2G-AAKH 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAL7                   TCGA-2G-AALF 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AALS                   TCGA-2G-AALT 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAM4                   TCGA-2X-A9D5 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-S6-A8JX                   TCGA-SB-A6J6 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-SB-A76C                   TCGA-SN-A6IS 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-SN-A84W                   TCGA-SN-A84X 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-SN-A84Y                   TCGA-VF-A8A9 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-VF-A8AA                   TCGA-VF-A8AB 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-VF-A8AC                   TCGA-VF-A8AD 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-VF-A8AE                   TCGA-W4-A7U4 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-WZ-A7V3                   TCGA-WZ-A7V4 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-WZ-A7V5                   TCGA-WZ-A8D5 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-X3-A8G4                   TCGA-XE-A8H5 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-A9SE                   TCGA-XE-AANI 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AANJ                   TCGA-XE-AANR 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AANV                   TCGA-XE-AAO6 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AAOB                   TCGA-XE-AAOC 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AAOD                   TCGA-XE-AAOF 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AAOJ                   TCGA-XY-A89B 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XY-A8S2                   TCGA-XY-A8S3 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XY-A9T9                   TCGA-YU-A90Q 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-YU-A90W                   TCGA-YU-A90Y 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-YU-A912                   TCGA-YU-A94D 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-YU-A94I                   TCGA-YU-AA61 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-ZM-AA05                   TCGA-ZM-AA06 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-ZM-AA0B                   TCGA-ZM-AA0E 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-ZM-AA0F                   TCGA-ZM-AA0H 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(12P12.1) MUTATED       10      8     15     11      5     13
  AMP PEAK 10(12P12.1) WILD-TYPE      1      0      0      0      0      0
                                vv
clus                             CLUS_7
  AMP PEAK 10(12P12.1) MUTATED       10
  AMP PEAK 10(12P12.1) WILD-TYPE      1
D10V8, multiclass
[1] "Remove cluster labels:"         "AMP PEAK 10(12P12.1) WILD-TYPE"
clus
  AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE 
                            72                              2 
                  TCGA-2G-AAFE                   TCGA-2G-AAFG 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAFN                   TCGA-2G-AAFO 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAG6                   TCGA-2G-AAG7 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAGG                   TCGA-2G-AAGI 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAGO                   TCGA-2G-AAGP 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAGS                   TCGA-2G-AAGZ 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAH0                   TCGA-2G-AAHC 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAHG                   TCGA-2G-AAHL 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAKG                   TCGA-2G-AAKH 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAL7                   TCGA-2G-AALF 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AALS                   TCGA-2G-AALT 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-2G-AAM4                   TCGA-2X-A9D5 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-S6-A8JX                   TCGA-SB-A6J6 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-SB-A76C                   TCGA-SN-A6IS 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-SN-A84W                   TCGA-SN-A84X 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-SN-A84Y                   TCGA-VF-A8A9 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-VF-A8AA                   TCGA-VF-A8AB 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-VF-A8AC                   TCGA-VF-A8AD 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-VF-A8AE                   TCGA-W4-A7U4 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-WZ-A7V3                   TCGA-WZ-A7V4 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-WZ-A7V5                   TCGA-WZ-A8D5 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-X3-A8G4                   TCGA-XE-A8H5 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-A9SE                   TCGA-XE-AANI 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AANJ                   TCGA-XE-AANR 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AANV                   TCGA-XE-AAO6 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AAOB                   TCGA-XE-AAOC 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AAOD                   TCGA-XE-AAOF 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XE-AAOJ                   TCGA-XY-A89B 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XY-A8S2                   TCGA-XY-A8S3 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-XY-A9T9                   TCGA-YU-A90Q 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-YU-A90W                   TCGA-YU-A90Y 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-YU-A912                   TCGA-YU-A94D 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-YU-A94I                   TCGA-YU-AA61 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-ZM-AA05                   TCGA-ZM-AA06 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-ZM-AA0B                   TCGA-ZM-AA0E 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 
                  TCGA-ZM-AA0F                   TCGA-ZM-AA0H 
"AMP PEAK 10(12P12.1) MUTATED" "AMP PEAK 10(12P12.1) MUTATED" 

Clustering(11) Variable = AMP PEAK 11(12P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P11.21) MUTATED       45     41     58
  AMP PEAK 11(12P11.21) WILD-TYPE      3      3      0
D11V1, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            45                               3
  CLUS_2                            41                               3
  CLUS_3                            58                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P11.21) MUTATED       51     49     44
  AMP PEAK 11(12P11.21) WILD-TYPE      5      0      1
D11V2, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            51                               5
  CLUS_2                            49                               0
  CLUS_3                            44                               1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P11.21) MUTATED       64     40     40
  AMP PEAK 11(12P11.21) WILD-TYPE      6      0      0
D11V3, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            64                               6
  CLUS_2                            40                               0
  CLUS_3                            40                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12P11.21) MUTATED       39     25     12     24      8     23
  AMP PEAK 11(12P11.21) WILD-TYPE      4      2      0      0      0      0
                                 vv
clus                              CLUS_7
  AMP PEAK 11(12P11.21) MUTATED       13
  AMP PEAK 11(12P11.21) WILD-TYPE      0
D11V4, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            39                               4
  CLUS_2                            25                               2
  CLUS_3                            12                               0
  CLUS_4                            24                               0
  CLUS_5                             8                               0
  CLUS_6                            23                               0
  CLUS_7                            13                               0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P11.21) MUTATED       10     21     16     23
  AMP PEAK 11(12P11.21) WILD-TYPE      2      0      0      2
D11V5, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            10                               2
  CLUS_2                            21                               0
  CLUS_3                            16                               0
  CLUS_4                            23                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P11.21) MUTATED       40     15     15
  AMP PEAK 11(12P11.21) WILD-TYPE      4      0      0
D11V6, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            40                               4
  CLUS_2                            15                               0
  CLUS_3                            15                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P11.21) MUTATED       21     13     17     19
  AMP PEAK 11(12P11.21) WILD-TYPE      1      0      3      0
D11V7, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            21                               1
  CLUS_2                            13                               0
  CLUS_3                            17                               3
  CLUS_4                            19                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12P11.21) MUTATED       10      7     15     11      5     13
  AMP PEAK 11(12P11.21) WILD-TYPE      1      1      0      0      0      0
                                 vv
clus                              CLUS_7
  AMP PEAK 11(12P11.21) MUTATED        9
  AMP PEAK 11(12P11.21) WILD-TYPE      2
D11V8, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            10                               1
  CLUS_2                             7                               1
  CLUS_3                            15                               0
  CLUS_4                            11                               0
  CLUS_5                             5                               0
  CLUS_6                            13                               0
  CLUS_7                             9                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q15) MUTATED       29     30     41
  AMP PEAK 12(12Q15) WILD-TYPE     19     14     17
D12V1, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         29                           19
  CLUS_2                         30                           14
  CLUS_3                         41                           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q15) MUTATED       38     33     29
  AMP PEAK 12(12Q15) WILD-TYPE     18     16     16
D12V2, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         38                           18
  CLUS_2                         33                           16
  CLUS_3                         29                           16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q15) MUTATED       48     27     25
  AMP PEAK 12(12Q15) WILD-TYPE     22     13     15
D12V3, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         48                           22
  CLUS_2                         27                           13
  CLUS_3                         25                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 12(12Q15) MUTATED       29     19      6     15      5     18      8
  AMP PEAK 12(12Q15) WILD-TYPE     14      8      6      9      3      5      5
D12V4, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         29                           14
  CLUS_2                         19                            8
  CLUS_3                          6                            6
  CLUS_4                         15                            9
  CLUS_5                          5                            3
  CLUS_6                         18                            5
  CLUS_7                          8                            5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12Q15) MUTATED        5     15      9     17
  AMP PEAK 12(12Q15) WILD-TYPE      7      6      7      8
D12V5, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                          5                            7
  CLUS_2                         15                            6
  CLUS_3                          9                            7
  CLUS_4                         17                            8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q15) MUTATED       27     11      8
  AMP PEAK 12(12Q15) WILD-TYPE     17      4      7
D12V6, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         27                           17
  CLUS_2                         11                            4
  CLUS_3                          8                            7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12Q15) MUTATED       12      9     13     12
  AMP PEAK 12(12Q15) WILD-TYPE     10      4      7      7
D12V7, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         12                           10
  CLUS_2                          9                            4
  CLUS_3                         13                            7
  CLUS_4                         12                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 12(12Q15) MUTATED        5      4     11      7      2      9      8
  AMP PEAK 12(12Q15) WILD-TYPE      6      4      4      4      3      4      3
D12V8, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                          5                            6
  CLUS_2                          4                            4
  CLUS_3                         11                            4
  CLUS_4                          7                            4
  CLUS_5                          2                            3
  CLUS_6                          9                            4
  CLUS_7                          8                            3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(16Q21) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16Q21) MUTATED        2      2     17
  AMP PEAK 13(16Q21) WILD-TYPE     46     42     41
D13V1, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          2                           46
  CLUS_2                          2                           42
  CLUS_3                         17                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16Q21) MUTATED        5      9      7
  AMP PEAK 13(16Q21) WILD-TYPE     51     40     38
D13V2, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          5                           51
  CLUS_2                          9                           40
  CLUS_3                          7                           38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16Q21) MUTATED        4      5     12
  AMP PEAK 13(16Q21) WILD-TYPE     66     35     28
D13V3, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          4                           66
  CLUS_2                          5                           35
  CLUS_3                         12                           28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 13(16Q21) MUTATED        1      3      3      8      0      3      3
  AMP PEAK 13(16Q21) WILD-TYPE     42     24      9     16      8     20     10
D13V4, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          1                           42
  CLUS_2                          3                           24
  CLUS_3                          3                            9
  CLUS_4                          8                           16
  CLUS_5                          0                            8
  CLUS_6                          3                           20
  CLUS_7                          3                           10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(16Q21) MUTATED        0      3      6      2
  AMP PEAK 13(16Q21) WILD-TYPE     12     18     10     23
D13V5, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          0                           12
  CLUS_2                          3                           18
  CLUS_3                          6                           10
  CLUS_4                          2                           23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16Q21) MUTATED        2      3      6
  AMP PEAK 13(16Q21) WILD-TYPE     42     12      9
D13V6, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          2                           42
  CLUS_2                          3                           12
  CLUS_3                          6                            9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(16Q21) MUTATED        2      1      0      8
  AMP PEAK 13(16Q21) WILD-TYPE     20     12     20     11
D13V7, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          2                           20
  CLUS_2                          1                           12
  CLUS_3                          0                           20
  CLUS_4                          8                           11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 13(16Q21) MUTATED        0      1      3      5      1      1      0
  AMP PEAK 13(16Q21) WILD-TYPE     11      7     12      6      4     12     11
D13V8, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          0                           11
  CLUS_2                          1                            7
  CLUS_3                          3                           12
  CLUS_4                          5                            6
  CLUS_5                          1                            4
  CLUS_6                          1                           12
  CLUS_7                          0                           11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(20Q11.21) MUTATED       11     11     29
  AMP PEAK 14(20Q11.21) WILD-TYPE     37     33     29
D14V1, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                            11                              37
  CLUS_2                            11                              33
  CLUS_3                            29                              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(20Q11.21) MUTATED       10     19     22
  AMP PEAK 14(20Q11.21) WILD-TYPE     46     30     23
D14V2, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                            10                              46
  CLUS_2                            19                              30
  CLUS_3                            22                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(20Q11.21) MUTATED       16     13     22
  AMP PEAK 14(20Q11.21) WILD-TYPE     54     27     18
D14V3, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                            16                              54
  CLUS_2                            13                              27
  CLUS_3                            22                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(20Q11.21) MUTATED       11      5      3     14      2      9
  AMP PEAK 14(20Q11.21) WILD-TYPE     32     22      9     10      6     14
                                 vv
clus                              CLUS_7
  AMP PEAK 14(20Q11.21) MUTATED        7
  AMP PEAK 14(20Q11.21) WILD-TYPE      6
D14V4, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                            11                              32
  CLUS_2                             5                              22
  CLUS_3                             3                               9
  CLUS_4                            14                              10
  CLUS_5                             2                               6
  CLUS_6                             9                              14
  CLUS_7                             7                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(20Q11.21) MUTATED        0      6      9      8
  AMP PEAK 14(20Q11.21) WILD-TYPE     12     15      7     17
D14V5, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                             0                              12
  CLUS_2                             6                              15
  CLUS_3                             9                               7
  CLUS_4                             8                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(20Q11.21) MUTATED        9      6      8
  AMP PEAK 14(20Q11.21) WILD-TYPE     35      9      7
D14V6, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                             9                              35
  CLUS_2                             6                               9
  CLUS_3                             8                               7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(20Q11.21) MUTATED        6      5      2     10
  AMP PEAK 14(20Q11.21) WILD-TYPE     16      8     18      9
D14V7, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                             6                              16
  CLUS_2                             5                               8
  CLUS_3                             2                              18
  CLUS_4                            10                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(20Q11.21) MUTATED        0      2      7      7      1      4
  AMP PEAK 14(20Q11.21) WILD-TYPE     11      6      8      4      4      9
                                 vv
clus                              CLUS_7
  AMP PEAK 14(20Q11.21) MUTATED        2
  AMP PEAK 14(20Q11.21) WILD-TYPE      9
D14V8, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                             0                              11
  CLUS_2                             2                               6
  CLUS_3                             7                               8
  CLUS_4                             7                               4
  CLUS_5                             1                               4
  CLUS_6                             4                               9
  CLUS_7                             2                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(22Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(22Q11.21) MUTATED       13     30     14
  AMP PEAK 15(22Q11.21) WILD-TYPE     35     14     44
D15V1, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                            13                              35
  CLUS_2                            30                              14
  CLUS_3                            14                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(22Q11.21) MUTATED       30     12     15
  AMP PEAK 15(22Q11.21) WILD-TYPE     26     37     30
D15V2, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                            30                              26
  CLUS_2                            12                              37
  CLUS_3                            15                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(22Q11.21) MUTATED       39     10      8
  AMP PEAK 15(22Q11.21) WILD-TYPE     31     30     32
D15V3, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                            39                              31
  CLUS_2                            10                              30
  CLUS_3                             8                              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(22Q11.21) MUTATED       16     23      4      5      1      5
  AMP PEAK 15(22Q11.21) WILD-TYPE     27      4      8     19      7     18
                                 vv
clus                              CLUS_7
  AMP PEAK 15(22Q11.21) MUTATED        3
  AMP PEAK 15(22Q11.21) WILD-TYPE     10
D15V4, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                            16                              27
  CLUS_2                            23                               4
  CLUS_3                             4                               8
  CLUS_4                             5                              19
  CLUS_5                             1                               7
  CLUS_6                             5                              18
  CLUS_7                             3                              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(22Q11.21) MUTATED        2      9      5     15
  AMP PEAK 15(22Q11.21) WILD-TYPE     10     12     11     10
D15V5, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                             2                              10
  CLUS_2                             9                              12
  CLUS_3                             5                              11
  CLUS_4                            15                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(22Q11.21) MUTATED       22      5      4
  AMP PEAK 15(22Q11.21) WILD-TYPE     22     10     11
D15V6, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                            22                              22
  CLUS_2                             5                              10
  CLUS_3                             4                              11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(22Q11.21) MUTATED       12      6      8      5
  AMP PEAK 15(22Q11.21) WILD-TYPE     10      7     12     14
D15V7, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                            12                              10
  CLUS_2                             6                               7
  CLUS_3                             8                              12
  CLUS_4                             5                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(22Q11.21) MUTATED        2      7      6      2      2      7
  AMP PEAK 15(22Q11.21) WILD-TYPE      9      1      9      9      3      6
                                 vv
clus                              CLUS_7
  AMP PEAK 15(22Q11.21) MUTATED        5
  AMP PEAK 15(22Q11.21) WILD-TYPE      6
D15V8, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                             2                               9
  CLUS_2                             7                               1
  CLUS_3                             6                               9
  CLUS_4                             2                               9
  CLUS_5                             2                               3
  CLUS_6                             7                               6
  CLUS_7                             5                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED        7     12     15
  DEL PEAK  1(1P36.31) WILD-TYPE     41     32     43
D16V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            7                             41
  CLUS_2                           12                             32
  CLUS_3                           15                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       11     11     12
  DEL PEAK  1(1P36.31) WILD-TYPE     45     38     33
D16V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           11                             45
  CLUS_2                           11                             38
  CLUS_3                           12                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       15      3     16
  DEL PEAK  1(1P36.31) WILD-TYPE     55     37     24
D16V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           15                             55
  CLUS_2                            3                             37
  CLUS_3                           16                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED        8      7      2      9      0      2
  DEL PEAK  1(1P36.31) WILD-TYPE     35     20     10     15      8     21
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.31) MUTATED        6
  DEL PEAK  1(1P36.31) WILD-TYPE      7
D16V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            8                             35
  CLUS_2                            7                             20
  CLUS_3                            2                             10
  CLUS_4                            9                             15
  CLUS_5                            0                              8
  CLUS_6                            2                             21
  CLUS_7                            6                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        3      2      7      5
  DEL PEAK  1(1P36.31) WILD-TYPE      9     19      9     20
D16V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            3                              9
  CLUS_2                            2                             19
  CLUS_3                            7                              9
  CLUS_4                            5                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED        8      2      7
  DEL PEAK  1(1P36.31) WILD-TYPE     36     13      8
D16V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                            2                             13
  CLUS_3                            7                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        5      1      3      8
  DEL PEAK  1(1P36.31) WILD-TYPE     17     12     17     11
D16V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                            1                             12
  CLUS_3                            3                             17
  CLUS_4                            8                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED        2      2      2      6      1      2
  DEL PEAK  1(1P36.31) WILD-TYPE      9      6     13      5      4     11
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.31) MUTATED        2
  DEL PEAK  1(1P36.31) WILD-TYPE      9
D16V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            2                              9
  CLUS_2                            2                              6
  CLUS_3                            2                             13
  CLUS_4                            6                              5
  CLUS_5                            1                              4
  CLUS_6                            2                             11
  CLUS_7                            2                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK  2(1P31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED        5     15      7
  DEL PEAK  2(1P31.1) WILD-TYPE     43     29     51
D17V1, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           5                            43
  CLUS_2                          15                            29
  CLUS_3                           7                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       10      7     10
  DEL PEAK  2(1P31.1) WILD-TYPE     46     42     35
D17V2, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          10                            46
  CLUS_2                           7                            42
  CLUS_3                          10                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       16      4      7
  DEL PEAK  2(1P31.1) WILD-TYPE     54     36     33
D17V3, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          16                            54
  CLUS_2                           4                            36
  CLUS_3                           7                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED       10      6      1      4      0      3
  DEL PEAK  2(1P31.1) WILD-TYPE     33     21     11     20      8     20
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P31.1) MUTATED        3
  DEL PEAK  2(1P31.1) WILD-TYPE     10
D17V4, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          10                            33
  CLUS_2                           6                            21
  CLUS_3                           1                            11
  CLUS_4                           4                            20
  CLUS_5                           0                             8
  CLUS_6                           3                            20
  CLUS_7                           3                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED        3      2      5      6
  DEL PEAK  2(1P31.1) WILD-TYPE      9     19     11     19
D17V5, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           3                             9
  CLUS_2                           2                            19
  CLUS_3                           5                            11
  CLUS_4                           6                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED        9      2      5
  DEL PEAK  2(1P31.1) WILD-TYPE     35     13     10
D17V6, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           9                            35
  CLUS_2                           2                            13
  CLUS_3                           5                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED        5      1      4      6
  DEL PEAK  2(1P31.1) WILD-TYPE     17     12     16     13
D17V7, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           5                            17
  CLUS_2                           1                            12
  CLUS_3                           4                            16
  CLUS_4                           6                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED        2      1      2      4      1      3
  DEL PEAK  2(1P31.1) WILD-TYPE      9      7     13      7      4     10
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P31.1) MUTATED        3
  DEL PEAK  2(1P31.1) WILD-TYPE      8
D17V8, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                           1                             7
  CLUS_3                           2                            13
  CLUS_4                           4                             7
  CLUS_5                           1                             4
  CLUS_6                           3                            10
  CLUS_7                           3                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK  3(1Q42.12) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.12) MUTATED        0      5      4
  DEL PEAK  3(1Q42.12) WILD-TYPE     48     39     54
D18V1, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            0                             48
  CLUS_2                            5                             39
  CLUS_3                            4                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.12) MUTATED        2      3      4
  DEL PEAK  3(1Q42.12) WILD-TYPE     54     46     41
D18V2, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            2                             54
  CLUS_2                            3                             46
  CLUS_3                            4                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.12) MUTATED        6      2      1
  DEL PEAK  3(1Q42.12) WILD-TYPE     64     38     39
D18V3, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            6                             64
  CLUS_2                            2                             38
  CLUS_3                            1                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q42.12) MUTATED        2      4      2      0      0      1
  DEL PEAK  3(1Q42.12) WILD-TYPE     41     23     10     24      8     22
                                vv
clus                             CLUS_7
  DEL PEAK  3(1Q42.12) MUTATED        0
  DEL PEAK  3(1Q42.12) WILD-TYPE     13
D18V4, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            2                             41
  CLUS_2                            4                             23
  CLUS_3                            2                             10
  CLUS_4                            0                             24
  CLUS_5                            0                              8
  CLUS_6                            1                             22
  CLUS_7                            0                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q42.12) MUTATED        0      3      0      5
  DEL PEAK  3(1Q42.12) WILD-TYPE     12     18     16     20
D18V5, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            0                             12
  CLUS_2                            3                             18
  CLUS_3                            0                             16
  CLUS_4                            5                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.12) MUTATED        5      3      0
  DEL PEAK  3(1Q42.12) WILD-TYPE     39     12     15
D18V6, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            5                             39
  CLUS_2                            3                             12
  CLUS_3                            0                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q42.12) MUTATED        5      1      0      2
  DEL PEAK  3(1Q42.12) WILD-TYPE     17     12     20     17
D18V7, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                            1                             12
  CLUS_3                            0                             20
  CLUS_4                            2                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q42.12) MUTATED        0      3      3      0      0      2
  DEL PEAK  3(1Q42.12) WILD-TYPE     11      5     12     11      5     11
                                vv
clus                             CLUS_7
  DEL PEAK  3(1Q42.12) MUTATED        0
  DEL PEAK  3(1Q42.12) WILD-TYPE     11
D18V8, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                            3                              5
  CLUS_3                            3                             12
  CLUS_4                            0                             11
  CLUS_5                            0                              5
  CLUS_6                            2                             11
  CLUS_7                            0                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        3      4      8
  DEL PEAK  4(2Q37.3) WILD-TYPE     45     40     50
D19V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           3                            45
  CLUS_2                           4                            40
  CLUS_3                           8                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        2      9      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     54     40     41
D19V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                            54
  CLUS_2                           9                            40
  CLUS_3                           4                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        4      8      3
  DEL PEAK  4(2Q37.3) WILD-TYPE     66     32     37
D19V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           4                            66
  CLUS_2                           8                            32
  CLUS_3                           3                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        2      2      2      2      0      6
  DEL PEAK  4(2Q37.3) WILD-TYPE     41     25     10     22      8     17
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        1
  DEL PEAK  4(2Q37.3) WILD-TYPE     12
D19V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                            41
  CLUS_2                           2                            25
  CLUS_3                           2                            10
  CLUS_4                           2                            22
  CLUS_5                           0                             8
  CLUS_6                           6                            17
  CLUS_7                           1                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        1      3      1      1
  DEL PEAK  4(2Q37.3) WILD-TYPE     11     18     15     24
D19V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           1                            11
  CLUS_2                           3                            18
  CLUS_3                           1                            15
  CLUS_4                           1                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        2      4      0
  DEL PEAK  4(2Q37.3) WILD-TYPE     42     11     15
D19V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                            42
  CLUS_2                           4                            11
  CLUS_3                           0                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        2      3      0      1
  DEL PEAK  4(2Q37.3) WILD-TYPE     20     10     20     18
D19V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                            20
  CLUS_2                           3                            10
  CLUS_3                           0                            20
  CLUS_4                           1                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        1      0      4      0      0      1
  DEL PEAK  4(2Q37.3) WILD-TYPE     10      8     11     11      5     12
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        0
  DEL PEAK  4(2Q37.3) WILD-TYPE     11
D19V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           0                             8
  CLUS_3                           4                            11
  CLUS_4                           0                            11
  CLUS_5                           0                             5
  CLUS_6                           1                            12
  CLUS_7                           0                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK  5(3P26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.2) MUTATED       12     14     15
  DEL PEAK  5(3P26.2) WILD-TYPE     36     30     43
D20V1, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          12                            36
  CLUS_2                          14                            30
  CLUS_3                          15                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.2) MUTATED       16     19      6
  DEL PEAK  5(3P26.2) WILD-TYPE     40     30     39
D20V2, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          16                            40
  CLUS_2                          19                            30
  CLUS_3                           6                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.2) MUTATED       22     16      3
  DEL PEAK  5(3P26.2) WILD-TYPE     48     24     37
D20V3, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          22                            48
  CLUS_2                          16                            24
  CLUS_3                           3                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P26.2) MUTATED       17      5      2      2      2     12
  DEL PEAK  5(3P26.2) WILD-TYPE     26     22     10     22      6     11
                               vv
clus                            CLUS_7
  DEL PEAK  5(3P26.2) MUTATED        1
  DEL PEAK  5(3P26.2) WILD-TYPE     12
D20V4, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          17                            26
  CLUS_2                           5                            22
  CLUS_3                           2                            10
  CLUS_4                           2                            22
  CLUS_5                           2                             6
  CLUS_6                          12                            11
  CLUS_7                           1                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P26.2) MUTATED        6      8      1      7
  DEL PEAK  5(3P26.2) WILD-TYPE      6     13     15     18
D20V5, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                           6                             6
  CLUS_2                           8                            13
  CLUS_3                           1                            15
  CLUS_4                           7                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.2) MUTATED       15      6      1
  DEL PEAK  5(3P26.2) WILD-TYPE     29      9     14
D20V6, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          15                            29
  CLUS_2                           6                             9
  CLUS_3                           1                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P26.2) MUTATED        6      5      9      2
  DEL PEAK  5(3P26.2) WILD-TYPE     16      8     11     17
D20V7, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                           6                            16
  CLUS_2                           5                             8
  CLUS_3                           9                            11
  CLUS_4                           2                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P26.2) MUTATED        5      3      6      1      0      1
  DEL PEAK  5(3P26.2) WILD-TYPE      6      5      9     10      5     12
                               vv
clus                            CLUS_7
  DEL PEAK  5(3P26.2) MUTATED        6
  DEL PEAK  5(3P26.2) WILD-TYPE      5
D20V8, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                           5                             6
  CLUS_2                           3                             5
  CLUS_3                           6                             9
  CLUS_4                           1                            10
  CLUS_5                           0                             5
  CLUS_6                           1                            12
  CLUS_7                           6                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK  6(4Q22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.2) MUTATED       29     38     43
  DEL PEAK  6(4Q22.2) WILD-TYPE     19      6     15
D21V1, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          29                            19
  CLUS_2                          38                             6
  CLUS_3                          43                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.2) MUTATED       40     42     28
  DEL PEAK  6(4Q22.2) WILD-TYPE     16      7     17
D21V2, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          40                            16
  CLUS_2                          42                             7
  CLUS_3                          28                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.2) MUTATED       52     35     23
  DEL PEAK  6(4Q22.2) WILD-TYPE     18      5     17
D21V3, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          52                            18
  CLUS_2                          35                             5
  CLUS_3                          23                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q22.2) MUTATED       27     25     10     14      7     21
  DEL PEAK  6(4Q22.2) WILD-TYPE     16      2      2     10      1      2
                               vv
clus                            CLUS_7
  DEL PEAK  6(4Q22.2) MUTATED        6
  DEL PEAK  6(4Q22.2) WILD-TYPE      7
D21V4, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          27                            16
  CLUS_2                          25                             2
  CLUS_3                          10                             2
  CLUS_4                          14                            10
  CLUS_5                           7                             1
  CLUS_6                          21                             2
  CLUS_7                           6                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q22.2) MUTATED        9     19      9     19
  DEL PEAK  6(4Q22.2) WILD-TYPE      3      2      7      6
D21V5, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                           9                             3
  CLUS_2                          19                             2
  CLUS_3                           9                             7
  CLUS_4                          19                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.2) MUTATED       33     14      9
  DEL PEAK  6(4Q22.2) WILD-TYPE     11      1      6
D21V6, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          33                            11
  CLUS_2                          14                             1
  CLUS_3                           9                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q22.2) MUTATED       18     11     14     13
  DEL PEAK  6(4Q22.2) WILD-TYPE      4      2      6      6
D21V7, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          18                             4
  CLUS_2                          11                             2
  CLUS_3                          14                             6
  CLUS_4                          13                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q22.2) MUTATED        9      6     14      7      3      9
  DEL PEAK  6(4Q22.2) WILD-TYPE      2      2      1      4      2      4
                               vv
clus                            CLUS_7
  DEL PEAK  6(4Q22.2) MUTATED        8
  DEL PEAK  6(4Q22.2) WILD-TYPE      3
D21V8, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                           9                             2
  CLUS_2                           6                             2
  CLUS_3                          14                             1
  CLUS_4                           7                             4
  CLUS_5                           3                             2
  CLUS_6                           9                             4
  CLUS_7                           8                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK  7(5P15.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.2) MUTATED       34     33     34
  DEL PEAK  7(5P15.2) WILD-TYPE     14     11     24
D22V1, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          34                            14
  CLUS_2                          33                            11
  CLUS_3                          34                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.2) MUTATED       41     31     29
  DEL PEAK  7(5P15.2) WILD-TYPE     15     18     16
D22V2, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          41                            15
  CLUS_2                          31                            18
  CLUS_3                          29                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.2) MUTATED       52     25     24
  DEL PEAK  7(5P15.2) WILD-TYPE     18     15     16
D22V3, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          52                            18
  CLUS_2                          25                            15
  CLUS_3                          24                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5P15.2) MUTATED       30     22      9     14      4     14
  DEL PEAK  7(5P15.2) WILD-TYPE     13      5      3     10      4      9
                               vv
clus                            CLUS_7
  DEL PEAK  7(5P15.2) MUTATED        8
  DEL PEAK  7(5P15.2) WILD-TYPE      5
D22V4, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          30                            13
  CLUS_2                          22                             5
  CLUS_3                           9                             3
  CLUS_4                          14                            10
  CLUS_5                           4                             4
  CLUS_6                          14                             9
  CLUS_7                           8                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.2) MUTATED        9     12     10     18
  DEL PEAK  7(5P15.2) WILD-TYPE      3      9      6      7
D22V5, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                           9                             3
  CLUS_2                          12                             9
  CLUS_3                          10                             6
  CLUS_4                          18                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.2) MUTATED       32      7     10
  DEL PEAK  7(5P15.2) WILD-TYPE     12      8      5
D22V6, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          32                            12
  CLUS_2                           7                             8
  CLUS_3                          10                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.2) MUTATED       16      6     15     12
  DEL PEAK  7(5P15.2) WILD-TYPE      6      7      5      7
D22V7, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          16                             6
  CLUS_2                           6                             7
  CLUS_3                          15                             5
  CLUS_4                          12                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5P15.2) MUTATED        8      7      6      7      4      9
  DEL PEAK  7(5P15.2) WILD-TYPE      3      1      9      4      1      4
                               vv
clus                            CLUS_7
  DEL PEAK  7(5P15.2) MUTATED        8
  DEL PEAK  7(5P15.2) WILD-TYPE      3
D22V8, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                           8                             3
  CLUS_2                           7                             1
  CLUS_3                           6                             9
  CLUS_4                           7                             4
  CLUS_5                           4                             1
  CLUS_6                           9                             4
  CLUS_7                           8                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK  8(5P14.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P14.3) MUTATED       33     34     36
  DEL PEAK  8(5P14.3) WILD-TYPE     15     10     22
D23V1, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          33                            15
  CLUS_2                          34                            10
  CLUS_3                          36                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P14.3) MUTATED       42     30     31
  DEL PEAK  8(5P14.3) WILD-TYPE     14     19     14
D23V2, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          42                            14
  CLUS_2                          30                            19
  CLUS_3                          31                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P14.3) MUTATED       53     24     26
  DEL PEAK  8(5P14.3) WILD-TYPE     17     16     14
D23V3, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          53                            17
  CLUS_2                          24                            16
  CLUS_3                          26                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5P14.3) MUTATED       30     23      9     15      4     13
  DEL PEAK  8(5P14.3) WILD-TYPE     13      4      3      9      4     10
                               vv
clus                            CLUS_7
  DEL PEAK  8(5P14.3) MUTATED        9
  DEL PEAK  8(5P14.3) WILD-TYPE      4
D23V4, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          30                            13
  CLUS_2                          23                             4
  CLUS_3                           9                             3
  CLUS_4                          15                             9
  CLUS_5                           4                             4
  CLUS_6                          13                            10
  CLUS_7                           9                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P14.3) MUTATED        9     12     10     19
  DEL PEAK  8(5P14.3) WILD-TYPE      3      9      6      6
D23V5, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                           9                             3
  CLUS_2                          12                             9
  CLUS_3                          10                             6
  CLUS_4                          19                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P14.3) MUTATED       33      7     10
  DEL PEAK  8(5P14.3) WILD-TYPE     11      8      5
D23V6, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          33                            11
  CLUS_2                           7                             8
  CLUS_3                          10                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P14.3) MUTATED       17      6     15     12
  DEL PEAK  8(5P14.3) WILD-TYPE      5      7      5      7
D23V7, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          17                             5
  CLUS_2                           6                             7
  CLUS_3                          15                             5
  CLUS_4                          12                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5P14.3) MUTATED        8      7      6      7      4     10
  DEL PEAK  8(5P14.3) WILD-TYPE      3      1      9      4      1      3
                               vv
clus                            CLUS_7
  DEL PEAK  8(5P14.3) MUTATED        8
  DEL PEAK  8(5P14.3) WILD-TYPE      3
D23V8, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                           8                             3
  CLUS_2                           7                             1
  CLUS_3                           6                             9
  CLUS_4                           7                             4
  CLUS_5                           4                             1
  CLUS_6                          10                             3
  CLUS_7                           8                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  9(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       33     36     36
  DEL PEAK  9(5Q12.1) WILD-TYPE     15      8     22
D24V1, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          33                            15
  CLUS_2                          36                             8
  CLUS_3                          36                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       44     29     32
  DEL PEAK  9(5Q12.1) WILD-TYPE     12     20     13
D24V2, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          44                            12
  CLUS_2                          29                            20
  CLUS_3                          32                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       56     23     26
  DEL PEAK  9(5Q12.1) WILD-TYPE     14     17     14
D24V3, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          56                            14
  CLUS_2                          23                            17
  CLUS_3                          26                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q12.1) MUTATED       30     26      9     15      4     12
  DEL PEAK  9(5Q12.1) WILD-TYPE     13      1      3      9      4     11
                               vv
clus                            CLUS_7
  DEL PEAK  9(5Q12.1) MUTATED        9
  DEL PEAK  9(5Q12.1) WILD-TYPE      4
D24V4, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          30                            13
  CLUS_2                          26                             1
  CLUS_3                           9                             3
  CLUS_4                          15                             9
  CLUS_5                           4                             4
  CLUS_6                          12                            11
  CLUS_7                           9                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED        9     13     10     20
  DEL PEAK  9(5Q12.1) WILD-TYPE      3      8      6      5
D24V5, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                           9                             3
  CLUS_2                          13                             8
  CLUS_3                          10                             6
  CLUS_4                          20                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       35      7     10
  DEL PEAK  9(5Q12.1) WILD-TYPE      9      8      5
D24V6, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          35                             9
  CLUS_2                           7                             8
  CLUS_3                          10                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       18      6     16     12
  DEL PEAK  9(5Q12.1) WILD-TYPE      4      7      4      7
D24V7, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          18                             4
  CLUS_2                           6                             7
  CLUS_3                          16                             4
  CLUS_4                          12                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q12.1) MUTATED        8      7      6      7      4     11
  DEL PEAK  9(5Q12.1) WILD-TYPE      3      1      9      4      1      2
                               vv
clus                            CLUS_7
  DEL PEAK  9(5Q12.1) MUTATED        9
  DEL PEAK  9(5Q12.1) WILD-TYPE      2
D24V8, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                           8                             3
  CLUS_2                           7                             1
  CLUS_3                           6                             9
  CLUS_4                           7                             4
  CLUS_5                           4                             1
  CLUS_6                          11                             2
  CLUS_7                           9                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK 10(6P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P22.3) MUTATED        2      3     19
  DEL PEAK 10(6P22.3) WILD-TYPE     46     41     39
D25V1, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           2                            46
  CLUS_2                           3                            41
  CLUS_3                          19                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P22.3) MUTATED        3     11     10
  DEL PEAK 10(6P22.3) WILD-TYPE     53     38     35
D25V2, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           3                            53
  CLUS_2                          11                            38
  CLUS_3                          10                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P22.3) MUTATED        4     10     10
  DEL PEAK 10(6P22.3) WILD-TYPE     66     30     30
D25V3, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           4                            66
  CLUS_2                          10                            30
  CLUS_3                          10                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P22.3) MUTATED        2      2      3      4      1      7
  DEL PEAK 10(6P22.3) WILD-TYPE     41     25      9     20      7     16
                               vv
clus                            CLUS_7
  DEL PEAK 10(6P22.3) MUTATED        5
  DEL PEAK 10(6P22.3) WILD-TYPE      8
D25V4, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           2                            41
  CLUS_2                           2                            25
  CLUS_3                           3                             9
  CLUS_4                           4                            20
  CLUS_5                           1                             7
  CLUS_6                           7                            16
  CLUS_7                           5                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P22.3) MUTATED        0      3      4      3
  DEL PEAK 10(6P22.3) WILD-TYPE     12     18     12     22
D25V5, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           0                            12
  CLUS_2                           3                            18
  CLUS_3                           4                            12
  CLUS_4                           3                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P22.3) MUTATED        3      4      3
  DEL PEAK 10(6P22.3) WILD-TYPE     41     11     12
D25V6, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           3                            41
  CLUS_2                           4                            11
  CLUS_3                           3                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P22.3) MUTATED        3      3      0      4
  DEL PEAK 10(6P22.3) WILD-TYPE     19     10     20     15
D25V7, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           3                            19
  CLUS_2                           3                            10
  CLUS_3                           0                            20
  CLUS_4                           4                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P22.3) MUTATED        0      1      4      3      0      2
  DEL PEAK 10(6P22.3) WILD-TYPE     11      7     11      8      5     11
                               vv
clus                            CLUS_7
  DEL PEAK 10(6P22.3) MUTATED        0
  DEL PEAK 10(6P22.3) WILD-TYPE     11
D25V8, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           1                             7
  CLUS_3                           4                            11
  CLUS_4                           3                             8
  CLUS_5                           0                             5
  CLUS_6                           2                            11
  CLUS_7                           0                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK 11(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        6      4     16
  DEL PEAK 11(6Q26) WILD-TYPE     42     40     42
D26V1, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         6                          42
  CLUS_2                         4                          40
  CLUS_3                        16                          42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        2     14     10
  DEL PEAK 11(6Q26) WILD-TYPE     54     35     35
D26V2, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         2                          54
  CLUS_2                        14                          35
  CLUS_3                        10                          35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        5     11     10
  DEL PEAK 11(6Q26) WILD-TYPE     65     29     30
D26V3, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         5                          65
  CLUS_2                        11                          29
  CLUS_3                        10                          30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(6Q26) MUTATED        1      4      3      3      3      6      6
  DEL PEAK 11(6Q26) WILD-TYPE     42     23      9     21      5     17      7
D26V4, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         1                          42
  CLUS_2                         4                          23
  CLUS_3                         3                           9
  CLUS_4                         3                          21
  CLUS_5                         3                           5
  CLUS_6                         6                          17
  CLUS_7                         6                           7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q26) MUTATED        1      3      4      2
  DEL PEAK 11(6Q26) WILD-TYPE     11     18     12     23
D26V5, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         1                          11
  CLUS_2                         3                          18
  CLUS_3                         4                          12
  CLUS_4                         2                          23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        4      2      4
  DEL PEAK 11(6Q26) WILD-TYPE     40     13     11
D26V6, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         4                          40
  CLUS_2                         2                          13
  CLUS_3                         4                          11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q26) MUTATED        2      2      1      5
  DEL PEAK 11(6Q26) WILD-TYPE     20     11     19     14
D26V7, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         2                          20
  CLUS_2                         2                          11
  CLUS_3                         1                          19
  CLUS_4                         5                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(6Q26) MUTATED        1      0      3      3      1      2      0
  DEL PEAK 11(6Q26) WILD-TYPE     10      8     12      8      4     11     11
D26V8, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         1                          10
  CLUS_2                         0                           8
  CLUS_3                         3                          12
  CLUS_4                         3                           8
  CLUS_5                         1                           4
  CLUS_6                         2                          11
  CLUS_7                         0                          11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK 12(7Q11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q11.22) MUTATED        0      1      3
  DEL PEAK 12(7Q11.22) WILD-TYPE     48     43     55
D27V1, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             48
  CLUS_2                            1                             43
  CLUS_3                            3                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q11.22) MUTATED        0      0      4
  DEL PEAK 12(7Q11.22) WILD-TYPE     56     49     41
D27V2, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             56
  CLUS_2                            0                             49
  CLUS_3                            4                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q11.22) MUTATED        0      0      4
  DEL PEAK 12(7Q11.22) WILD-TYPE     70     40     36
D27V3, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             70
  CLUS_2                            0                             40
  CLUS_3                            4                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7Q11.22) MUTATED        0      0      1      1      0      0
  DEL PEAK 12(7Q11.22) WILD-TYPE     43     27     11     23      8     23
                                vv
clus                             CLUS_7
  DEL PEAK 12(7Q11.22) MUTATED        2
  DEL PEAK 12(7Q11.22) WILD-TYPE     11
D27V4, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             43
  CLUS_2                            0                             27
  CLUS_3                            1                             11
  CLUS_4                            1                             23
  CLUS_5                            0                              8
  CLUS_6                            0                             23
  CLUS_7                            2                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(7Q11.22) MUTATED        0      0      1      0
  DEL PEAK 12(7Q11.22) WILD-TYPE     12     21     15     25
D27V5, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 12(7Q11.22) MUTATED"
clus
  DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE 
                             1                             73 
                    TCGA-2G-AAFE                     TCGA-2G-AAFG 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAFN                     TCGA-2G-AAFO 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAG6                     TCGA-2G-AAG7 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAGG                     TCGA-2G-AAGI 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAGO                     TCGA-2G-AAGP 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAGS                     TCGA-2G-AAGZ 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAH0                     TCGA-2G-AAHC 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAHG                     TCGA-2G-AAHL 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAKG                     TCGA-2G-AAKH 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAL7                     TCGA-2G-AALF 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AALS                     TCGA-2G-AALT 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAM4                     TCGA-2X-A9D5 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-S6-A8JX                     TCGA-SB-A6J6 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-SB-A76C                     TCGA-SN-A6IS 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-SN-A84W                     TCGA-SN-A84X 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-SN-A84Y                     TCGA-VF-A8A9 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-VF-A8AA                     TCGA-VF-A8AB 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-VF-A8AC                     TCGA-VF-A8AD 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-VF-A8AE                     TCGA-W4-A7U4 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-WZ-A7V3                     TCGA-WZ-A7V4 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-WZ-A7V5                     TCGA-WZ-A8D5 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-X3-A8G4                     TCGA-XE-A8H5 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-A9SE                     TCGA-XE-AANI 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-AANJ                     TCGA-XE-AANR 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-AANV                     TCGA-XE-AAO6 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-AAOB                     TCGA-XE-AAOC 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-AAOD                     TCGA-XE-AAOF 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XY-A89B                     TCGA-XY-A8S2 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XY-A8S3                     TCGA-XY-A9T9 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-YU-A90Q                     TCGA-YU-A90S 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-YU-A90W                     TCGA-YU-A90Y 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-YU-A912                     TCGA-YU-A94D 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-YU-A94I                     TCGA-YU-AA61 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-ZM-AA05                     TCGA-ZM-AA06 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-ZM-AA0B                     TCGA-ZM-AA0D 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-ZM-AA0E                     TCGA-ZM-AA0F 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-ZM-AA0H 
"DEL PEAK 12(7Q11.22) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q11.22) MUTATED        0      0      1
  DEL PEAK 12(7Q11.22) WILD-TYPE     44     15     14
D27V6, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 12(7Q11.22) MUTATED"
clus
  DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE 
                             1                             73 
                    TCGA-2G-AAFE                     TCGA-2G-AAFG 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAFN                     TCGA-2G-AAFO 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAG6                     TCGA-2G-AAG7 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAGG                     TCGA-2G-AAGI 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAGO                     TCGA-2G-AAGP 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAGS                     TCGA-2G-AAGZ 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAH0                     TCGA-2G-AAHC 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAHG                     TCGA-2G-AAHL 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAKG                     TCGA-2G-AAKH 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAL7                     TCGA-2G-AALF 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AALS                     TCGA-2G-AALT 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAM4                     TCGA-2X-A9D5 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-S6-A8JX                     TCGA-SB-A6J6 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-SB-A76C                     TCGA-SN-A6IS 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-SN-A84W                     TCGA-SN-A84X 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-SN-A84Y                     TCGA-VF-A8A9 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-VF-A8AA                     TCGA-VF-A8AB 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-VF-A8AC                     TCGA-VF-A8AD 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-VF-A8AE                     TCGA-W4-A7U4 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-WZ-A7V3                     TCGA-WZ-A7V4 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-WZ-A7V5                     TCGA-WZ-A8D5 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-X3-A8G4                     TCGA-XE-A8H5 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-A9SE                     TCGA-XE-AANI 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-AANJ                     TCGA-XE-AANR 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-AANV                     TCGA-XE-AAO6 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-AAOB                     TCGA-XE-AAOC 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-AAOD                     TCGA-XE-AAOF 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XY-A89B                     TCGA-XY-A8S2 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XY-A8S3                     TCGA-XY-A9T9 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-YU-A90Q                     TCGA-YU-A90S 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-YU-A90W                     TCGA-YU-A90Y 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-YU-A912                     TCGA-YU-A94D 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-YU-A94I                     TCGA-YU-AA61 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-ZM-AA05                     TCGA-ZM-AA06 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-ZM-AA0B                     TCGA-ZM-AA0D 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-ZM-AA0E                     TCGA-ZM-AA0F 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-ZM-AA0H 
"DEL PEAK 12(7Q11.22) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(7Q11.22) MUTATED        0      0      0      1
  DEL PEAK 12(7Q11.22) WILD-TYPE     22     13     20     18
D27V7, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 12(7Q11.22) MUTATED"
clus
  DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE 
                             1                             73 
                    TCGA-2G-AAFE                     TCGA-2G-AAFG 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAFN                     TCGA-2G-AAFO 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAG6                     TCGA-2G-AAG7 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAGG                     TCGA-2G-AAGI 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAGO                     TCGA-2G-AAGP 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAGS                     TCGA-2G-AAGZ 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAH0                     TCGA-2G-AAHC 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAHG                     TCGA-2G-AAHL 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAKG                     TCGA-2G-AAKH 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAL7                     TCGA-2G-AALF 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AALS                     TCGA-2G-AALT 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAM4                     TCGA-2X-A9D5 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-S6-A8JX                     TCGA-SB-A6J6 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-SB-A76C                     TCGA-SN-A6IS 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-SN-A84W                     TCGA-SN-A84X 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-SN-A84Y                     TCGA-VF-A8A9 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-VF-A8AA                     TCGA-VF-A8AB 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-VF-A8AC                     TCGA-VF-A8AD 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-VF-A8AE                     TCGA-W4-A7U4 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-WZ-A7V3                     TCGA-WZ-A7V4 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-WZ-A7V5                     TCGA-WZ-A8D5 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-X3-A8G4                     TCGA-XE-A8H5 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-A9SE                     TCGA-XE-AANI 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-AANJ                     TCGA-XE-AANR 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-AANV                     TCGA-XE-AAO6 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-AAOB                     TCGA-XE-AAOC 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-AAOD                     TCGA-XE-AAOF 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XY-A89B                     TCGA-XY-A8S2 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XY-A8S3                     TCGA-XY-A9T9 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-YU-A90Q                     TCGA-YU-A90S 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-YU-A90W                     TCGA-YU-A90Y 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-YU-A912                     TCGA-YU-A94D 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-YU-A94I                     TCGA-YU-AA61 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-ZM-AA05                     TCGA-ZM-AA06 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-ZM-AA0B                     TCGA-ZM-AA0D 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-ZM-AA0E                     TCGA-ZM-AA0F 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-ZM-AA0H 
"DEL PEAK 12(7Q11.22) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7Q11.22) MUTATED        0      0      0      1      0      0
  DEL PEAK 12(7Q11.22) WILD-TYPE     11      8     15     10      5     13
                                vv
clus                             CLUS_7
  DEL PEAK 12(7Q11.22) MUTATED        0
  DEL PEAK 12(7Q11.22) WILD-TYPE     11
D27V8, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 12(7Q11.22) MUTATED"
clus
  DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE 
                             1                             73 
                    TCGA-2G-AAFE                     TCGA-2G-AAFG 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAFN                     TCGA-2G-AAFO 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAG6                     TCGA-2G-AAG7 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAGG                     TCGA-2G-AAGI 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAGO                     TCGA-2G-AAGP 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAGS                     TCGA-2G-AAGZ 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAH0                     TCGA-2G-AAHC 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAHG                     TCGA-2G-AAHL 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAKG                     TCGA-2G-AAKH 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAL7                     TCGA-2G-AALF 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AALS                     TCGA-2G-AALT 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-2G-AAM4                     TCGA-2X-A9D5 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-S6-A8JX                     TCGA-SB-A6J6 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-SB-A76C                     TCGA-SN-A6IS 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-SN-A84W                     TCGA-SN-A84X 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-SN-A84Y                     TCGA-VF-A8A9 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-VF-A8AA                     TCGA-VF-A8AB 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-VF-A8AC                     TCGA-VF-A8AD 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-VF-A8AE                     TCGA-W4-A7U4 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-WZ-A7V3                     TCGA-WZ-A7V4 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-WZ-A7V5                     TCGA-WZ-A8D5 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-X3-A8G4                     TCGA-XE-A8H5 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-A9SE                     TCGA-XE-AANI 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-AANJ                     TCGA-XE-AANR 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-AANV                     TCGA-XE-AAO6 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-AAOB                     TCGA-XE-AAOC 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XE-AAOD                     TCGA-XE-AAOF 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XY-A89B                     TCGA-XY-A8S2 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-XY-A8S3                     TCGA-XY-A9T9 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-YU-A90Q                     TCGA-YU-A90S 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-YU-A90W                     TCGA-YU-A90Y 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-YU-A912                     TCGA-YU-A94D 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-YU-A94I                     TCGA-YU-AA61 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-ZM-AA05                     TCGA-ZM-AA06 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-ZM-AA0B                     TCGA-ZM-AA0D 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-ZM-AA0E                     TCGA-ZM-AA0F 
"DEL PEAK 12(7Q11.22) WILD-TYPE" "DEL PEAK 12(7Q11.22) WILD-TYPE" 
                    TCGA-ZM-AA0H 
"DEL PEAK 12(7Q11.22) WILD-TYPE" 

Clustering(28) Variable = DEL PEAK 13(7Q36.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED        1      6      8
  DEL PEAK 13(7Q36.1) WILD-TYPE     47     38     50
D28V1, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           1                            47
  CLUS_2                           6                            38
  CLUS_3                           8                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED        6      4      5
  DEL PEAK 13(7Q36.1) WILD-TYPE     50     45     40
D28V2, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           6                            50
  CLUS_2                           4                            45
  CLUS_3                           5                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED        6      2      7
  DEL PEAK 13(7Q36.1) WILD-TYPE     64     38     33
D28V3, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           6                            64
  CLUS_2                           2                            38
  CLUS_3                           7                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.1) MUTATED        0      6      3      2      0      2
  DEL PEAK 13(7Q36.1) WILD-TYPE     43     21      9     22      8     21
                               vv
clus                            CLUS_7
  DEL PEAK 13(7Q36.1) MUTATED        2
  DEL PEAK 13(7Q36.1) WILD-TYPE     11
D28V4, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           0                            43
  CLUS_2                           6                            21
  CLUS_3                           3                             9
  CLUS_4                           2                            22
  CLUS_5                           0                             8
  CLUS_6                           2                            21
  CLUS_7                           2                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.1) MUTATED        0      3      2      5
  DEL PEAK 13(7Q36.1) WILD-TYPE     12     18     14     20
D28V5, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           0                            12
  CLUS_2                           3                            18
  CLUS_3                           2                            14
  CLUS_4                           5                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED        5      3      2
  DEL PEAK 13(7Q36.1) WILD-TYPE     39     12     13
D28V6, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           5                            39
  CLUS_2                           3                            12
  CLUS_3                           2                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.1) MUTATED        5      1      0      4
  DEL PEAK 13(7Q36.1) WILD-TYPE     17     12     20     15
D28V7, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           5                            17
  CLUS_2                           1                            12
  CLUS_3                           0                            20
  CLUS_4                           4                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.1) MUTATED        0      3      3      2      0      2
  DEL PEAK 13(7Q36.1) WILD-TYPE     11      5     12      9      5     11
                               vv
clus                            CLUS_7
  DEL PEAK 13(7Q36.1) MUTATED        0
  DEL PEAK 13(7Q36.1) WILD-TYPE     11
D28V8, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           3                             5
  CLUS_3                           3                            12
  CLUS_4                           2                             9
  CLUS_5                           0                             5
  CLUS_6                           2                            11
  CLUS_7                           0                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK 14(9P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P24.3) MUTATED       17     20     33
  DEL PEAK 14(9P24.3) WILD-TYPE     31     24     25
D29V1, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          17                            31
  CLUS_2                          20                            24
  CLUS_3                          33                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P24.3) MUTATED       26     24     20
  DEL PEAK 14(9P24.3) WILD-TYPE     30     25     25
D29V2, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          26                            30
  CLUS_2                          24                            25
  CLUS_3                          20                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P24.3) MUTATED       32     19     19
  DEL PEAK 14(9P24.3) WILD-TYPE     38     21     21
D29V3, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          32                            38
  CLUS_2                          19                            21
  CLUS_3                          19                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(9P24.3) MUTATED       18     14      8     11      4     10
  DEL PEAK 14(9P24.3) WILD-TYPE     25     13      4     13      4     13
                               vv
clus                            CLUS_7
  DEL PEAK 14(9P24.3) MUTATED        5
  DEL PEAK 14(9P24.3) WILD-TYPE      8
D29V4, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          18                            25
  CLUS_2                          14                            13
  CLUS_3                           8                             4
  CLUS_4                          11                            13
  CLUS_5                           4                             4
  CLUS_6                          10                            13
  CLUS_7                           5                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P24.3) MUTATED        3     11      6     14
  DEL PEAK 14(9P24.3) WILD-TYPE      9     10     10     11
D29V5, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                           3                             9
  CLUS_2                          11                            10
  CLUS_3                           6                            10
  CLUS_4                          14                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P24.3) MUTATED       20      8      6
  DEL PEAK 14(9P24.3) WILD-TYPE     24      7      9
D29V6, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          20                            24
  CLUS_2                           8                             7
  CLUS_3                           6                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P24.3) MUTATED       13      6      6      9
  DEL PEAK 14(9P24.3) WILD-TYPE      9      7     14     10
D29V7, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          13                             9
  CLUS_2                           6                             7
  CLUS_3                           6                            14
  CLUS_4                           9                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(9P24.3) MUTATED        2      5      8      6      1      7
  DEL PEAK 14(9P24.3) WILD-TYPE      9      3      7      5      4      6
                               vv
clus                            CLUS_7
  DEL PEAK 14(9P24.3) MUTATED        5
  DEL PEAK 14(9P24.3) WILD-TYPE      6
D29V8, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                           5                             3
  CLUS_3                           8                             7
  CLUS_4                           6                             5
  CLUS_5                           1                             4
  CLUS_6                           7                             6
  CLUS_7                           5                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK 15(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       16     17     33
  DEL PEAK 15(9P23) WILD-TYPE     32     27     25
D30V1, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        16                          32
  CLUS_2                        17                          27
  CLUS_3                        33                          25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       26     21     19
  DEL PEAK 15(9P23) WILD-TYPE     30     28     26
D30V2, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        26                          30
  CLUS_2                        21                          28
  CLUS_3                        19                          26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       30     17     19
  DEL PEAK 15(9P23) WILD-TYPE     40     23     21
D30V3, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        30                          40
  CLUS_2                        17                          23
  CLUS_3                        19                          21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 15(9P23) MUTATED       16     14      8     11      2     10      5
  DEL PEAK 15(9P23) WILD-TYPE     27     13      4     13      6     13      8
D30V4, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        16                          27
  CLUS_2                        14                          13
  CLUS_3                         8                           4
  CLUS_4                        11                          13
  CLUS_5                         2                           6
  CLUS_6                        10                          13
  CLUS_7                         5                           8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED        3     10      6     14
  DEL PEAK 15(9P23) WILD-TYPE      9     11     10     11
D30V5, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                         3                           9
  CLUS_2                        10                          11
  CLUS_3                         6                          10
  CLUS_4                        14                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       19      8      6
  DEL PEAK 15(9P23) WILD-TYPE     25      7      9
D30V6, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        19                          25
  CLUS_2                         8                           7
  CLUS_3                         6                           9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       13      5      6      9
  DEL PEAK 15(9P23) WILD-TYPE      9      8     14     10
D30V7, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        13                           9
  CLUS_2                         5                           8
  CLUS_3                         6                          14
  CLUS_4                         9                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 15(9P23) MUTATED        2      5      7      6      1      7      5
  DEL PEAK 15(9P23) WILD-TYPE      9      3      8      5      4      6      6
D30V8, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                         2                           9
  CLUS_2                         5                           3
  CLUS_3                         7                           8
  CLUS_4                         6                           5
  CLUS_5                         1                           4
  CLUS_6                         7                           6
  CLUS_7                         5                           6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 16(9Q33.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q33.3) MUTATED       12     13     35
  DEL PEAK 16(9Q33.3) WILD-TYPE     36     31     23
D31V1, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          12                            36
  CLUS_2                          13                            31
  CLUS_3                          35                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q33.3) MUTATED       19     23     18
  DEL PEAK 16(9Q33.3) WILD-TYPE     37     26     27
D31V2, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          19                            37
  CLUS_2                          23                            26
  CLUS_3                          18                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q33.3) MUTATED       22     20     18
  DEL PEAK 16(9Q33.3) WILD-TYPE     48     20     22
D31V3, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          22                            48
  CLUS_2                          20                            20
  CLUS_3                          18                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9Q33.3) MUTATED       14      8      9     12      1     13
  DEL PEAK 16(9Q33.3) WILD-TYPE     29     19      3     12      7     10
                               vv
clus                            CLUS_7
  DEL PEAK 16(9Q33.3) MUTATED        3
  DEL PEAK 16(9Q33.3) WILD-TYPE     10
D31V4, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          14                            29
  CLUS_2                           8                            19
  CLUS_3                           9                             3
  CLUS_4                          12                            12
  CLUS_5                           1                             7
  CLUS_6                          13                            10
  CLUS_7                           3                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9Q33.3) MUTATED        3     12      8     10
  DEL PEAK 16(9Q33.3) WILD-TYPE      9      9      8     15
D31V5, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                           3                             9
  CLUS_2                          12                             9
  CLUS_3                           8                             8
  CLUS_4                          10                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q33.3) MUTATED       13     12      8
  DEL PEAK 16(9Q33.3) WILD-TYPE     31      3      7
D31V6, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          13                            31
  CLUS_2                          12                             3
  CLUS_3                           8                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9Q33.3) MUTATED        9      8      4     12
  DEL PEAK 16(9Q33.3) WILD-TYPE     13      5     16      7
D31V7, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                           9                            13
  CLUS_2                           8                             5
  CLUS_3                           4                            16
  CLUS_4                          12                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9Q33.3) MUTATED        2      2     11      7      2      6
  DEL PEAK 16(9Q33.3) WILD-TYPE      9      6      4      4      3      7
                               vv
clus                            CLUS_7
  DEL PEAK 16(9Q33.3) MUTATED        3
  DEL PEAK 16(9Q33.3) WILD-TYPE      8
D31V8, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                           2                             6
  CLUS_3                          11                             4
  CLUS_4                           7                             4
  CLUS_5                           2                             3
  CLUS_6                           6                             7
  CLUS_7                           3                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 17(9Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.2) MUTATED       12     13     35
  DEL PEAK 17(9Q34.2) WILD-TYPE     36     31     23
D32V1, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          12                            36
  CLUS_2                          13                            31
  CLUS_3                          35                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.2) MUTATED       19     24     17
  DEL PEAK 17(9Q34.2) WILD-TYPE     37     25     28
D32V2, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          19                            37
  CLUS_2                          24                            25
  CLUS_3                          17                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.2) MUTATED       22     21     17
  DEL PEAK 17(9Q34.2) WILD-TYPE     48     19     23
D32V3, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          22                            48
  CLUS_2                          21                            19
  CLUS_3                          17                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.2) MUTATED       14      8      9     12      1     14
  DEL PEAK 17(9Q34.2) WILD-TYPE     29     19      3     12      7      9
                               vv
clus                            CLUS_7
  DEL PEAK 17(9Q34.2) MUTATED        2
  DEL PEAK 17(9Q34.2) WILD-TYPE     11
D32V4, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          14                            29
  CLUS_2                           8                            19
  CLUS_3                           9                             3
  CLUS_4                          12                            12
  CLUS_5                           1                             7
  CLUS_6                          14                             9
  CLUS_7                           2                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.2) MUTATED        3     11      7     10
  DEL PEAK 17(9Q34.2) WILD-TYPE      9     10      9     15
D32V5, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                           3                             9
  CLUS_2                          11                            10
  CLUS_3                           7                             9
  CLUS_4                          10                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.2) MUTATED       13     11      7
  DEL PEAK 17(9Q34.2) WILD-TYPE     31      4      8
D32V6, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          13                            31
  CLUS_2                          11                             4
  CLUS_3                           7                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.2) MUTATED        9      7      4     11
  DEL PEAK 17(9Q34.2) WILD-TYPE     13      6     16      8
D32V7, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                           9                            13
  CLUS_2                           7                             6
  CLUS_3                           4                            16
  CLUS_4                          11                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.2) MUTATED        2      2     10      6      2      6
  DEL PEAK 17(9Q34.2) WILD-TYPE      9      6      5      5      3      7
                               vv
clus                            CLUS_7
  DEL PEAK 17(9Q34.2) MUTATED        3
  DEL PEAK 17(9Q34.2) WILD-TYPE      8
D32V8, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                           2                             6
  CLUS_3                          10                             5
  CLUS_4                           6                             5
  CLUS_5                           2                             3
  CLUS_6                           6                             7
  CLUS_7                           3                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 18(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       20     21     43
  DEL PEAK 18(10P15.3) WILD-TYPE     28     23     15
D33V1, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           20                             28
  CLUS_2                           21                             23
  CLUS_3                           43                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       21     37     26
  DEL PEAK 18(10P15.3) WILD-TYPE     35     12     19
D33V2, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           21                             35
  CLUS_2                           37                             12
  CLUS_3                           26                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       28     32     24
  DEL PEAK 18(10P15.3) WILD-TYPE     42      8     16
D33V3, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           28                             42
  CLUS_2                           32                              8
  CLUS_3                           24                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED       16     12      8     14      5     21
  DEL PEAK 18(10P15.3) WILD-TYPE     27     15      4     10      3      2
                                vv
clus                             CLUS_7
  DEL PEAK 18(10P15.3) MUTATED        8
  DEL PEAK 18(10P15.3) WILD-TYPE      5
D33V4, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           16                             27
  CLUS_2                           12                             15
  CLUS_3                            8                              4
  CLUS_4                           14                             10
  CLUS_5                            5                              3
  CLUS_6                           21                              2
  CLUS_7                            8                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED        6     12     10     13
  DEL PEAK 18(10P15.3) WILD-TYPE      6      9      6     12
D33V5, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                            6                              6
  CLUS_2                           12                              9
  CLUS_3                           10                              6
  CLUS_4                           13                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       20     12      9
  DEL PEAK 18(10P15.3) WILD-TYPE     24      3      6
D33V6, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           20                             24
  CLUS_2                           12                              3
  CLUS_3                            9                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       12     10      8     11
  DEL PEAK 18(10P15.3) WILD-TYPE     10      3     12      8
D33V7, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           12                             10
  CLUS_2                           10                              3
  CLUS_3                            8                             12
  CLUS_4                           11                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED        6      4     12      6      3      7
  DEL PEAK 18(10P15.3) WILD-TYPE      5      4      3      5      2      6
                                vv
clus                             CLUS_7
  DEL PEAK 18(10P15.3) MUTATED        3
  DEL PEAK 18(10P15.3) WILD-TYPE      8
D33V8, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                            6                              5
  CLUS_2                            4                              4
  CLUS_3                           12                              3
  CLUS_4                            6                              5
  CLUS_5                            3                              2
  CLUS_6                            7                              6
  CLUS_7                            3                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 19(10Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.1) MUTATED       19     15     37
  DEL PEAK 19(10Q23.1) WILD-TYPE     29     29     21
D34V1, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           19                             29
  CLUS_2                           15                             29
  CLUS_3                           37                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.1) MUTATED       15     37     19
  DEL PEAK 19(10Q23.1) WILD-TYPE     41     12     26
D34V2, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           15                             41
  CLUS_2                           37                             12
  CLUS_3                           19                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.1) MUTATED       22     31     18
  DEL PEAK 19(10Q23.1) WILD-TYPE     48      9     22
D34V3, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           22                             48
  CLUS_2                           31                              9
  CLUS_3                           18                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.1) MUTATED       14      8      9     12      5     19
  DEL PEAK 19(10Q23.1) WILD-TYPE     29     19      3     12      3      4
                                vv
clus                             CLUS_7
  DEL PEAK 19(10Q23.1) MUTATED        4
  DEL PEAK 19(10Q23.1) WILD-TYPE      9
D34V4, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           14                             29
  CLUS_2                            8                             19
  CLUS_3                            9                              3
  CLUS_4                           12                             12
  CLUS_5                            5                              3
  CLUS_6                           19                              4
  CLUS_7                            4                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.1) MUTATED        5     13      7      9
  DEL PEAK 19(10Q23.1) WILD-TYPE      7      8      9     16
D34V5, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                            5                              7
  CLUS_2                           13                              8
  CLUS_3                            7                              9
  CLUS_4                            9                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.1) MUTATED       16     11      7
  DEL PEAK 19(10Q23.1) WILD-TYPE     28      4      8
D34V6, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           16                             28
  CLUS_2                           11                              4
  CLUS_3                            7                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.1) MUTATED        8     10      7      9
  DEL PEAK 19(10Q23.1) WILD-TYPE     14      3     13     10
D34V7, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                            8                             14
  CLUS_2                           10                              3
  CLUS_3                            7                             13
  CLUS_4                            9                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.1) MUTATED        6      2     12      4      3      5
  DEL PEAK 19(10Q23.1) WILD-TYPE      5      6      3      7      2      8
                                vv
clus                             CLUS_7
  DEL PEAK 19(10Q23.1) MUTATED        2
  DEL PEAK 19(10Q23.1) WILD-TYPE      9
D34V8, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                            6                              5
  CLUS_2                            2                              6
  CLUS_3                           12                              3
  CLUS_4                            4                              7
  CLUS_5                            3                              2
  CLUS_6                            5                              8
  CLUS_7                            2                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 20(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       18     17     41
  DEL PEAK 20(10Q26.3) WILD-TYPE     30     27     17
D35V1, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           18                             30
  CLUS_2                           17                             27
  CLUS_3                           41                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       16     38     22
  DEL PEAK 20(10Q26.3) WILD-TYPE     40     11     23
D35V2, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           16                             40
  CLUS_2                           38                             11
  CLUS_3                           22                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       24     33     19
  DEL PEAK 20(10Q26.3) WILD-TYPE     46      7     21
D35V3, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           24                             46
  CLUS_2                           33                              7
  CLUS_3                           19                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q26.3) MUTATED       16      8     10     13      6     19
  DEL PEAK 20(10Q26.3) WILD-TYPE     27     19      2     11      2      4
                                vv
clus                             CLUS_7
  DEL PEAK 20(10Q26.3) MUTATED        4
  DEL PEAK 20(10Q26.3) WILD-TYPE      9
D35V4, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           16                             27
  CLUS_2                            8                             19
  CLUS_3                           10                              2
  CLUS_4                           13                             11
  CLUS_5                            6                              2
  CLUS_6                           19                              4
  CLUS_7                            4                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q26.3) MUTATED        5     13      8     11
  DEL PEAK 20(10Q26.3) WILD-TYPE      7      8      8     14
D35V5, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                            5                              7
  CLUS_2                           13                              8
  CLUS_3                            8                              8
  CLUS_4                           11                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       18     12      7
  DEL PEAK 20(10Q26.3) WILD-TYPE     26      3      8
D35V6, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           18                             26
  CLUS_2                           12                              3
  CLUS_3                            7                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q26.3) MUTATED       10     11      7      9
  DEL PEAK 20(10Q26.3) WILD-TYPE     12      2     13     10
D35V7, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           10                             12
  CLUS_2                           11                              2
  CLUS_3                            7                             13
  CLUS_4                            9                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q26.3) MUTATED        6      2     13      4      3      7
  DEL PEAK 20(10Q26.3) WILD-TYPE      5      6      2      7      2      6
                                vv
clus                             CLUS_7
  DEL PEAK 20(10Q26.3) MUTATED        2
  DEL PEAK 20(10Q26.3) WILD-TYPE      9
D35V8, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                            6                              5
  CLUS_2                            2                              6
  CLUS_3                           13                              2
  CLUS_4                            4                              7
  CLUS_5                            3                              2
  CLUS_6                            7                              6
  CLUS_7                            2                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 21(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       24     34     36
  DEL PEAK 21(11P15.5) WILD-TYPE     24     10     22
D36V1, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           24                             24
  CLUS_2                           34                             10
  CLUS_3                           36                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       39     31     24
  DEL PEAK 21(11P15.5) WILD-TYPE     17     18     21
D36V2, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           39                             17
  CLUS_2                           31                             18
  CLUS_3                           24                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       51     27     16
  DEL PEAK 21(11P15.5) WILD-TYPE     19     13     24
D36V3, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           51                             19
  CLUS_2                           27                             13
  CLUS_3                           16                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED       31     20      8     12      4     17
  DEL PEAK 21(11P15.5) WILD-TYPE     12      7      4     12      4      6
                                vv
clus                             CLUS_7
  DEL PEAK 21(11P15.5) MUTATED        2
  DEL PEAK 21(11P15.5) WILD-TYPE     11
D36V4, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           31                             12
  CLUS_2                           20                              7
  CLUS_3                            8                              4
  CLUS_4                           12                             12
  CLUS_5                            4                              4
  CLUS_6                           17                              6
  CLUS_7                            2                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       10     15      4     22
  DEL PEAK 21(11P15.5) WILD-TYPE      2      6     12      3
D36V5, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           10                              2
  CLUS_2                           15                              6
  CLUS_3                            4                             12
  CLUS_4                           22                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       36     11      4
  DEL PEAK 21(11P15.5) WILD-TYPE      8      4     11
D36V6, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           36                              8
  CLUS_2                           11                              4
  CLUS_3                            4                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       20      8     16      7
  DEL PEAK 21(11P15.5) WILD-TYPE      2      5      4     12
D36V7, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           20                              2
  CLUS_2                            8                              5
  CLUS_3                           16                              4
  CLUS_4                            7                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED       10      6     10      3      2     11
  DEL PEAK 21(11P15.5) WILD-TYPE      1      2      5      8      3      2
                                vv
clus                             CLUS_7
  DEL PEAK 21(11P15.5) MUTATED        9
  DEL PEAK 21(11P15.5) WILD-TYPE      2
D36V8, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           10                              1
  CLUS_2                            6                              2
  CLUS_3                           10                              5
  CLUS_4                            3                              8
  CLUS_5                            2                              3
  CLUS_6                           11                              2
  CLUS_7                            9                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 22(11P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P12) MUTATED       27     35     37
  DEL PEAK 22(11P12) WILD-TYPE     21      9     21
D37V1, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         27                           21
  CLUS_2                         35                            9
  CLUS_3                         37                           21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P12) MUTATED       40     35     24
  DEL PEAK 22(11P12) WILD-TYPE     16     14     21
D37V2, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         40                           16
  CLUS_2                         35                           14
  CLUS_3                         24                           21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P12) MUTATED       52     30     17
  DEL PEAK 22(11P12) WILD-TYPE     18     10     23
D37V3, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         52                           18
  CLUS_2                         30                           10
  CLUS_3                         17                           23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 22(11P12) MUTATED       31     21      8     12      5     19      3
  DEL PEAK 22(11P12) WILD-TYPE     12      6      4     12      3      4     10
D37V4, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         31                           12
  CLUS_2                         21                            6
  CLUS_3                          8                            4
  CLUS_4                         12                           12
  CLUS_5                          5                            3
  CLUS_6                         19                            4
  CLUS_7                          3                           10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11P12) MUTATED       10     17      5     20
  DEL PEAK 22(11P12) WILD-TYPE      2      4     11      5
D37V5, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         10                            2
  CLUS_2                         17                            4
  CLUS_3                          5                           11
  CLUS_4                         20                            5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P12) MUTATED       35     12      5
  DEL PEAK 22(11P12) WILD-TYPE      9      3     10
D37V6, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         35                            9
  CLUS_2                         12                            3
  CLUS_3                          5                           10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11P12) MUTATED       18     10     16      8
  DEL PEAK 22(11P12) WILD-TYPE      4      3      4     11
D37V7, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         18                            4
  CLUS_2                         10                            3
  CLUS_3                         16                            4
  CLUS_4                          8                           11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 22(11P12) MUTATED       10      6     11      3      3     10      9
  DEL PEAK 22(11P12) WILD-TYPE      1      2      4      8      2      3      2
D37V8, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         10                            1
  CLUS_2                          6                            2
  CLUS_3                         11                            4
  CLUS_4                          3                            8
  CLUS_5                          3                            2
  CLUS_6                         10                            3
  CLUS_7                          9                            2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 23(11Q12.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q12.3) MUTATED       30     43     41
  DEL PEAK 23(11Q12.3) WILD-TYPE     18      1     17
D38V1, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           30                             18
  CLUS_2                           43                              1
  CLUS_3                           41                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q12.3) MUTATED       46     38     30
  DEL PEAK 23(11Q12.3) WILD-TYPE     10     11     15
D38V2, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           46                             10
  CLUS_2                           38                             11
  CLUS_3                           30                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q12.3) MUTATED       62     32     20
  DEL PEAK 23(11Q12.3) WILD-TYPE      8      8     20
D38V3, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           62                              8
  CLUS_2                           32                              8
  CLUS_3                           20                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q12.3) MUTATED       35     27      9     14      6     20
  DEL PEAK 23(11Q12.3) WILD-TYPE      8      0      3     10      2      3
                                vv
clus                             CLUS_7
  DEL PEAK 23(11Q12.3) MUTATED        3
  DEL PEAK 23(11Q12.3) WILD-TYPE     10
D38V4, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           35                              8
  CLUS_2                           27                              0
  CLUS_3                            9                              3
  CLUS_4                           14                             10
  CLUS_5                            6                              2
  CLUS_6                           20                              3
  CLUS_7                            3                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q12.3) MUTATED        9     20      6     24
  DEL PEAK 23(11Q12.3) WILD-TYPE      3      1     10      1
D38V5, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                            9                              3
  CLUS_2                           20                              1
  CLUS_3                            6                             10
  CLUS_4                           24                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q12.3) MUTATED       39     14      6
  DEL PEAK 23(11Q12.3) WILD-TYPE      5      1      9
D38V6, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           39                              5
  CLUS_2                           14                              1
  CLUS_3                            6                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q12.3) MUTATED       21     11     17     10
  DEL PEAK 23(11Q12.3) WILD-TYPE      1      2      3      9
D38V7, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           21                              1
  CLUS_2                           11                              2
  CLUS_3                           17                              3
  CLUS_4                           10                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q12.3) MUTATED       10      8     13      4      3     12
  DEL PEAK 23(11Q12.3) WILD-TYPE      1      0      2      7      2      1
                                vv
clus                             CLUS_7
  DEL PEAK 23(11Q12.3) MUTATED        9
  DEL PEAK 23(11Q12.3) WILD-TYPE      2
D38V8, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           10                              1
  CLUS_2                            8                              0
  CLUS_3                           13                              2
  CLUS_4                            4                              7
  CLUS_5                            3                              2
  CLUS_6                           12                              1
  CLUS_7                            9                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 24(11Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q24.2) MUTATED       33     44     45
  DEL PEAK 24(11Q24.2) WILD-TYPE     15      0     13
D39V1, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                           33                             15
  CLUS_2                           44                              0
  CLUS_3                           45                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q24.2) MUTATED       47     40     35
  DEL PEAK 24(11Q24.2) WILD-TYPE      9      9     10
D39V2, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                           47                              9
  CLUS_2                           40                              9
  CLUS_3                           35                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q24.2) MUTATED       62     34     26
  DEL PEAK 24(11Q24.2) WILD-TYPE      8      6     14
D39V3, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                           62                              8
  CLUS_2                           34                              6
  CLUS_3                           26                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q24.2) MUTATED       35     27     10     18      7     20
  DEL PEAK 24(11Q24.2) WILD-TYPE      8      0      2      6      1      3
                                vv
clus                             CLUS_7
  DEL PEAK 24(11Q24.2) MUTATED        5
  DEL PEAK 24(11Q24.2) WILD-TYPE      8
D39V4, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                           35                              8
  CLUS_2                           27                              0
  CLUS_3                           10                              2
  CLUS_4                           18                              6
  CLUS_5                            7                              1
  CLUS_6                           20                              3
  CLUS_7                            5                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11Q24.2) MUTATED        9     20     10     25
  DEL PEAK 24(11Q24.2) WILD-TYPE      3      1      6      0
D39V5, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                            9                              3
  CLUS_2                           20                              1
  CLUS_3                           10                              6
  CLUS_4                           25                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q24.2) MUTATED       41     13     10
  DEL PEAK 24(11Q24.2) WILD-TYPE      3      2      5
D39V6, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                           41                              3
  CLUS_2                           13                              2
  CLUS_3                           10                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11Q24.2) MUTATED       22     12     17     13
  DEL PEAK 24(11Q24.2) WILD-TYPE      0      1      3      6
D39V7, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                           22                              0
  CLUS_2                           12                              1
  CLUS_3                           17                              3
  CLUS_4                           13                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q24.2) MUTATED       10      8     13      6      5     13
  DEL PEAK 24(11Q24.2) WILD-TYPE      1      0      2      5      0      0
                                vv
clus                             CLUS_7
  DEL PEAK 24(11Q24.2) MUTATED        9
  DEL PEAK 24(11Q24.2) WILD-TYPE      2
D39V8, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                           10                              1
  CLUS_2                            8                              0
  CLUS_3                           13                              2
  CLUS_4                            6                              5
  CLUS_5                            5                              0
  CLUS_6                           13                              0
  CLUS_7                            9                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 25(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       33     39     41
  DEL PEAK 25(13Q34) WILD-TYPE     15      5     17
D40V1, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         33                           15
  CLUS_2                         39                            5
  CLUS_3                         41                           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       45     36     32
  DEL PEAK 25(13Q34) WILD-TYPE     11     13     13
D40V2, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         45                           11
  CLUS_2                         36                           13
  CLUS_3                         32                           13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       57     31     25
  DEL PEAK 25(13Q34) WILD-TYPE     13      9     15
D40V3, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         57                           13
  CLUS_2                         31                            9
  CLUS_3                         25                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 25(13Q34) MUTATED       30     27     11     15      6     17      7
  DEL PEAK 25(13Q34) WILD-TYPE     13      0      1      9      2      6      6
D40V4, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         30                           13
  CLUS_2                         27                            0
  CLUS_3                         11                            1
  CLUS_4                         15                            9
  CLUS_5                          6                            2
  CLUS_6                         17                            6
  CLUS_7                          7                            6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q34) MUTATED        9     17     10     21
  DEL PEAK 25(13Q34) WILD-TYPE      3      4      6      4
D40V5, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                          9                            3
  CLUS_2                         17                            4
  CLUS_3                         10                            6
  CLUS_4                         21                            4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       36     12      9
  DEL PEAK 25(13Q34) WILD-TYPE      8      3      6
D40V6, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         36                            8
  CLUS_2                         12                            3
  CLUS_3                          9                            6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q34) MUTATED       22     10     12     13
  DEL PEAK 25(13Q34) WILD-TYPE      0      3      8      6
D40V7, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         22                            0
  CLUS_2                         10                            3
  CLUS_3                         12                            8
  CLUS_4                         13                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 25(13Q34) MUTATED        7      8     12      8      2     13      7
  DEL PEAK 25(13Q34) WILD-TYPE      4      0      3      3      3      0      4
D40V8, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                          7                            4
  CLUS_2                          8                            0
  CLUS_3                         12                            3
  CLUS_4                          8                            3
  CLUS_5                          2                            3
  CLUS_6                         13                            0
  CLUS_7                          7                            4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 26(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED       14     29     23
  DEL PEAK 26(16Q23.1) WILD-TYPE     34     15     35
D41V1, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           14                             34
  CLUS_2                           29                             15
  CLUS_3                           23                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED       24     26     16
  DEL PEAK 26(16Q23.1) WILD-TYPE     32     23     29
D41V2, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           24                             32
  CLUS_2                           26                             23
  CLUS_3                           16                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED       32     20     14
  DEL PEAK 26(16Q23.1) WILD-TYPE     38     20     26
D41V3, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           32                             38
  CLUS_2                           20                             20
  CLUS_3                           14                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(16Q23.1) MUTATED       16     16      6      8      4     12
  DEL PEAK 26(16Q23.1) WILD-TYPE     27     11      6     16      4     11
                                vv
clus                             CLUS_7
  DEL PEAK 26(16Q23.1) MUTATED        4
  DEL PEAK 26(16Q23.1) WILD-TYPE      9
D41V4, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           16                             27
  CLUS_2                           16                             11
  CLUS_3                            6                              6
  CLUS_4                            8                             16
  CLUS_5                            4                              4
  CLUS_6                           12                             11
  CLUS_7                            4                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(16Q23.1) MUTATED        5     12      4     11
  DEL PEAK 26(16Q23.1) WILD-TYPE      7      9     12     14
D41V5, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                            5                              7
  CLUS_2                           12                              9
  CLUS_3                            4                             12
  CLUS_4                           11                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED       21      7      4
  DEL PEAK 26(16Q23.1) WILD-TYPE     23      8     11
D41V6, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           21                             23
  CLUS_2                            7                              8
  CLUS_3                            4                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(16Q23.1) MUTATED       13      7      6      6
  DEL PEAK 26(16Q23.1) WILD-TYPE      9      6     14     13
D41V7, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           13                              9
  CLUS_2                            7                              6
  CLUS_3                            6                             14
  CLUS_4                            6                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(16Q23.1) MUTATED        5      6      7      3      2      7
  DEL PEAK 26(16Q23.1) WILD-TYPE      6      2      8      8      3      6
                                vv
clus                             CLUS_7
  DEL PEAK 26(16Q23.1) MUTATED        2
  DEL PEAK 26(16Q23.1) WILD-TYPE      9
D41V8, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                            5                              6
  CLUS_2                            6                              2
  CLUS_3                            7                              8
  CLUS_4                            3                              8
  CLUS_5                            2                              3
  CLUS_6                            7                              6
  CLUS_7                            2                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 27(18P11.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18P11.32) MUTATED       36     36     46
  DEL PEAK 27(18P11.32) WILD-TYPE     12      8     12
D42V1, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            36                              12
  CLUS_2                            36                               8
  CLUS_3                            46                              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18P11.32) MUTATED       43     43     32
  DEL PEAK 27(18P11.32) WILD-TYPE     13      6     13
D42V2, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            43                              13
  CLUS_2                            43                               6
  CLUS_3                            32                              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18P11.32) MUTATED       55     36     27
  DEL PEAK 27(18P11.32) WILD-TYPE     15      4     13
D42V3, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            55                              15
  CLUS_2                            36                               4
  CLUS_3                            27                              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(18P11.32) MUTATED       34     21     11     15      7     21
  DEL PEAK 27(18P11.32) WILD-TYPE      9      6      1      9      1      2
                                 vv
clus                              CLUS_7
  DEL PEAK 27(18P11.32) MUTATED        9
  DEL PEAK 27(18P11.32) WILD-TYPE      4
D42V4, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            34                               9
  CLUS_2                            21                               6
  CLUS_3                            11                               1
  CLUS_4                            15                               9
  CLUS_5                             7                               1
  CLUS_6                            21                               2
  CLUS_7                             9                               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(18P11.32) MUTATED       11     18      9     20
  DEL PEAK 27(18P11.32) WILD-TYPE      1      3      7      5
D42V5, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            11                               1
  CLUS_2                            18                               3
  CLUS_3                             9                               7
  CLUS_4                            20                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18P11.32) MUTATED       35     14      9
  DEL PEAK 27(18P11.32) WILD-TYPE      9      1      6
D42V6, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            35                               9
  CLUS_2                            14                               1
  CLUS_3                             9                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(18P11.32) MUTATED       21     10     14     13
  DEL PEAK 27(18P11.32) WILD-TYPE      1      3      6      6
D42V7, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            21                               1
  CLUS_2                            10                               3
  CLUS_3                            14                               6
  CLUS_4                            13                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(18P11.32) MUTATED       10      7     13      6      4     12
  DEL PEAK 27(18P11.32) WILD-TYPE      1      1      2      5      1      1
                                 vv
clus                              CLUS_7
  DEL PEAK 27(18P11.32) MUTATED        6
  DEL PEAK 27(18P11.32) WILD-TYPE      5
D42V8, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            10                               1
  CLUS_2                             7                               1
  CLUS_3                            13                               2
  CLUS_4                             6                               5
  CLUS_5                             4                               1
  CLUS_6                            12                               1
  CLUS_7                             6                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 28(18Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q22.2) MUTATED       35     40     50
  DEL PEAK 28(18Q22.2) WILD-TYPE     13      4      8
D43V1, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           35                             13
  CLUS_2                           40                              4
  CLUS_3                           50                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q22.2) MUTATED       45     45     35
  DEL PEAK 28(18Q22.2) WILD-TYPE     11      4     10
D43V2, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           45                             11
  CLUS_2                           45                              4
  CLUS_3                           35                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q22.2) MUTATED       58     37     30
  DEL PEAK 28(18Q22.2) WILD-TYPE     12      3     10
D43V3, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           58                             12
  CLUS_2                           37                              3
  CLUS_3                           30                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(18Q22.2) MUTATED       33     25     12     17      7     21
  DEL PEAK 28(18Q22.2) WILD-TYPE     10      2      0      7      1      2
                                vv
clus                             CLUS_7
  DEL PEAK 28(18Q22.2) MUTATED       10
  DEL PEAK 28(18Q22.2) WILD-TYPE      3
D43V4, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           33                             10
  CLUS_2                           25                              2
  CLUS_3                           12                              0
  CLUS_4                           17                              7
  CLUS_5                            7                              1
  CLUS_6                           21                              2
  CLUS_7                           10                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(18Q22.2) MUTATED       11     19     10     21
  DEL PEAK 28(18Q22.2) WILD-TYPE      1      2      6      4
D43V5, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           11                              1
  CLUS_2                           19                              2
  CLUS_3                           10                              6
  CLUS_4                           21                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q22.2) MUTATED       37     14     10
  DEL PEAK 28(18Q22.2) WILD-TYPE      7      1      5
D43V6, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           37                              7
  CLUS_2                           14                              1
  CLUS_3                           10                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(18Q22.2) MUTATED       22     11     14     14
  DEL PEAK 28(18Q22.2) WILD-TYPE      0      2      6      5
D43V7, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           22                              0
  CLUS_2                           11                              2
  CLUS_3                           14                              6
  CLUS_4                           14                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(18Q22.2) MUTATED       10      8     13      6      5     13
  DEL PEAK 28(18Q22.2) WILD-TYPE      1      0      2      5      0      0
                                vv
clus                             CLUS_7
  DEL PEAK 28(18Q22.2) MUTATED        6
  DEL PEAK 28(18Q22.2) WILD-TYPE      5
D43V8, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           10                              1
  CLUS_2                            8                              0
  CLUS_3                           13                              2
  CLUS_4                            6                              5
  CLUS_5                            5                              0
  CLUS_6                           13                              0
  CLUS_7                            6                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 29(19Q13.41) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.41) MUTATED       14      7     37
  DEL PEAK 29(19Q13.41) WILD-TYPE     34     37     21
D44V1, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                            14                              34
  CLUS_2                             7                              37
  CLUS_3                            37                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.41) MUTATED        2     37     19
  DEL PEAK 29(19Q13.41) WILD-TYPE     54     12     26
D44V2, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                             2                              54
  CLUS_2                            37                              12
  CLUS_3                            19                              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.41) MUTATED        1     33     24
  DEL PEAK 29(19Q13.41) WILD-TYPE     69      7     16
D44V3, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                             1                              69
  CLUS_2                            33                               7
  CLUS_3                            24                              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(19Q13.41) MUTATED        0      1     11     14      5     20
  DEL PEAK 29(19Q13.41) WILD-TYPE     43     26      1     10      3      3
                                 vv
clus                              CLUS_7
  DEL PEAK 29(19Q13.41) MUTATED        7
  DEL PEAK 29(19Q13.41) WILD-TYPE      6
D44V4, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                             0                              43
  CLUS_2                             1                              26
  CLUS_3                            11                               1
  CLUS_4                            14                              10
  CLUS_5                             5                               3
  CLUS_6                            20                               3
  CLUS_7                             7                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19Q13.41) MUTATED        0     15      8      1
  DEL PEAK 29(19Q13.41) WILD-TYPE     12      6      8     24
D44V5, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                             0                              12
  CLUS_2                            15                               6
  CLUS_3                             8                               8
  CLUS_4                             1                              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.41) MUTATED        2     14      8
  DEL PEAK 29(19Q13.41) WILD-TYPE     42      1      7
D44V6, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                             2                              42
  CLUS_2                            14                               1
  CLUS_3                             8                               7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19Q13.41) MUTATED        1     11      0     12
  DEL PEAK 29(19Q13.41) WILD-TYPE     21      2     20      7
D44V7, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                             1                              21
  CLUS_2                            11                               2
  CLUS_3                             0                              20
  CLUS_4                            12                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(19Q13.41) MUTATED        0      0     14      6      3      1
  DEL PEAK 29(19Q13.41) WILD-TYPE     11      8      1      5      2     12
                                 vv
clus                              CLUS_7
  DEL PEAK 29(19Q13.41) MUTATED        0
  DEL PEAK 29(19Q13.41) WILD-TYPE     11
D44V8, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                             0                              11
  CLUS_2                             0                               8
  CLUS_3                            14                               1
  CLUS_4                             6                               5
  CLUS_5                             3                               2
  CLUS_6                             1                              12
  CLUS_7                             0                              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 30(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED        6      9     14
  DEL PEAK 30(20P12.1) WILD-TYPE     42     35     44
D45V1, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            6                             42
  CLUS_2                            9                             35
  CLUS_3                           14                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED        9     13      7
  DEL PEAK 30(20P12.1) WILD-TYPE     47     36     38
D45V2, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            9                             47
  CLUS_2                           13                             36
  CLUS_3                            7                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED       11     11      7
  DEL PEAK 30(20P12.1) WILD-TYPE     59     29     33
D45V3, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                           11                             59
  CLUS_2                           11                             29
  CLUS_3                            7                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(20P12.1) MUTATED        3      8      3      5      2      7
  DEL PEAK 30(20P12.1) WILD-TYPE     40     19      9     19      6     16
                                vv
clus                             CLUS_7
  DEL PEAK 30(20P12.1) MUTATED        1
  DEL PEAK 30(20P12.1) WILD-TYPE     12
D45V4, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            3                             40
  CLUS_2                            8                             19
  CLUS_3                            3                              9
  CLUS_4                            5                             19
  CLUS_5                            2                              6
  CLUS_6                            7                             16
  CLUS_7                            1                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(20P12.1) MUTATED        2      7      2      5
  DEL PEAK 30(20P12.1) WILD-TYPE     10     14     14     20
D45V5, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            2                             10
  CLUS_2                            7                             14
  CLUS_3                            2                             14
  CLUS_4                            5                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED        8      6      2
  DEL PEAK 30(20P12.1) WILD-TYPE     36      9     13
D45V6, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                            6                              9
  CLUS_3                            2                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(20P12.1) MUTATED        5      6      2      3
  DEL PEAK 30(20P12.1) WILD-TYPE     17      7     18     16
D45V7, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                            6                              7
  CLUS_3                            2                             18
  CLUS_4                            3                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(20P12.1) MUTATED        2      4      6      2      0      2
  DEL PEAK 30(20P12.1) WILD-TYPE      9      4      9      9      5     11
                                vv
clus                             CLUS_7
  DEL PEAK 30(20P12.1) MUTATED        0
  DEL PEAK 30(20P12.1) WILD-TYPE     11
D45V8, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            2                              9
  CLUS_2                            4                              4
  CLUS_3                            6                              9
  CLUS_4                            2                              9
  CLUS_5                            0                              5
  CLUS_6                            2                             11
  CLUS_7                            0                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 31(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(XP21.1) MUTATED        4      9     15
  DEL PEAK 31(XP21.1) WILD-TYPE     44     35     43
D46V1, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                           4                            44
  CLUS_2                           9                            35
  CLUS_3                          15                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(XP21.1) MUTATED        5      6     17
  DEL PEAK 31(XP21.1) WILD-TYPE     51     43     28
D46V2, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                           5                            51
  CLUS_2                           6                            43
  CLUS_3                          17                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(XP21.1) MUTATED       10      5     13
  DEL PEAK 31(XP21.1) WILD-TYPE     60     35     27
D46V3, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                          10                            60
  CLUS_2                           5                            35
  CLUS_3                          13                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(XP21.1) MUTATED        3      7      2      7      0      4
  DEL PEAK 31(XP21.1) WILD-TYPE     40     20     10     17      8     19
                               vv
clus                            CLUS_7
  DEL PEAK 31(XP21.1) MUTATED        5
  DEL PEAK 31(XP21.1) WILD-TYPE      8
D46V4, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                           3                            40
  CLUS_2                           7                            20
  CLUS_3                           2                            10
  CLUS_4                           7                            17
  CLUS_5                           0                             8
  CLUS_6                           4                            19
  CLUS_7                           5                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(XP21.1) MUTATED        0      3      4      4
  DEL PEAK 31(XP21.1) WILD-TYPE     12     18     12     21
D46V5, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                           0                            12
  CLUS_2                           3                            18
  CLUS_3                           4                            12
  CLUS_4                           4                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(XP21.1) MUTATED        4      3      4
  DEL PEAK 31(XP21.1) WILD-TYPE     40     12     11
D46V6, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                           4                            40
  CLUS_2                           3                            12
  CLUS_3                           4                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(XP21.1) MUTATED        4      2      0      5
  DEL PEAK 31(XP21.1) WILD-TYPE     18     11     20     14
D46V7, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                           4                            18
  CLUS_2                           2                            11
  CLUS_3                           0                            20
  CLUS_4                           5                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(XP21.1) MUTATED        0      1      2      4      1      3
  DEL PEAK 31(XP21.1) WILD-TYPE     11      7     13      7      4     10
                               vv
clus                            CLUS_7
  DEL PEAK 31(XP21.1) MUTATED        0
  DEL PEAK 31(XP21.1) WILD-TYPE     11
D46V8, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           1                             7
  CLUS_3                           2                            13
  CLUS_4                           4                             7
  CLUS_5                           1                             4
  CLUS_6                           3                            10
  CLUS_7                           0                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 32(XQ27.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(XQ27.3) MUTATED        2     11     17
  DEL PEAK 32(XQ27.3) WILD-TYPE     46     33     41
D47V1, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                           2                            46
  CLUS_2                          11                            33
  CLUS_3                          17                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(XQ27.3) MUTATED        5      8     17
  DEL PEAK 32(XQ27.3) WILD-TYPE     51     41     28
D47V2, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                           5                            51
  CLUS_2                           8                            41
  CLUS_3                          17                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(XQ27.3) MUTATED       11      6     13
  DEL PEAK 32(XQ27.3) WILD-TYPE     59     34     27
D47V3, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                          11                            59
  CLUS_2                           6                            34
  CLUS_3                          13                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(XQ27.3) MUTATED        4      7      4      8      0      3
  DEL PEAK 32(XQ27.3) WILD-TYPE     39     20      8     16      8     20
                               vv
clus                            CLUS_7
  DEL PEAK 32(XQ27.3) MUTATED        4
  DEL PEAK 32(XQ27.3) WILD-TYPE      9
D47V4, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                           4                            39
  CLUS_2                           7                            20
  CLUS_3                           4                             8
  CLUS_4                           8                            16
  CLUS_5                           0                             8
  CLUS_6                           3                            20
  CLUS_7                           4                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(XQ27.3) MUTATED        1      2      4      4
  DEL PEAK 32(XQ27.3) WILD-TYPE     11     19     12     21
D47V5, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                           1                            11
  CLUS_2                           2                            19
  CLUS_3                           4                            12
  CLUS_4                           4                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(XQ27.3) MUTATED        5      2      4
  DEL PEAK 32(XQ27.3) WILD-TYPE     39     13     11
D47V6, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                           5                            39
  CLUS_2                           2                            13
  CLUS_3                           4                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(XQ27.3) MUTATED        5      2      0      4
  DEL PEAK 32(XQ27.3) WILD-TYPE     17     11     20     15
D47V7, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                           5                            17
  CLUS_2                           2                            11
  CLUS_3                           0                            20
  CLUS_4                           4                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(XQ27.3) MUTATED        1      1      2      3      1      3
  DEL PEAK 32(XQ27.3) WILD-TYPE     10      7     13      8      4     10
                               vv
clus                            CLUS_7
  DEL PEAK 32(XQ27.3) MUTATED        0
  DEL PEAK 32(XQ27.3) WILD-TYPE     11
D47V8, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           1                             7
  CLUS_3                           2                            13
  CLUS_4                           3                             8
  CLUS_5                           1                             4
  CLUS_6                           3                            10
  CLUS_7                           0                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
