[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTUCEC-TP"
[1] "opt"                    "-OPAGGREGRATED_CLUSTER"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/UCEC-TP/11541775/UCEC-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/UCEC-TP/11724867/UCEC-TP.mergedcluster.txt"

nPatients in clinical file=514, in cluster file=550, common to both=513
[1]  12 513
[1] "MRNA_CNMF"
[1] 3
 1  2  3  4 
14 18 12 10 
 1  2  3  4 
14 18 12 10 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3  4  5 
14 10  7  7 16 
 1  2  3  4  5 
14 10  7  7 16 
[1] "CN_CNMF"
[1] 3
  1   2   3   4   5 
152 290  19   9  35 
  1   2   3   4   5 
152 290  19   9  35 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3 
150  82 165 
  1   2   3 
150  82 165 
[1] "RPPA_CNMF"
[1] 3
 1  2  3  4  5  6 
42 39 40 12 41 26 
 1  2  3  4  5  6 
42 39 40 12 41 26 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3  4 
70 67 44 19 
 1  2  3  4 
70 67 44 19 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3 
147 214 146 
  1   2   3 
147 214 146 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
206 158 143 
  1   2   3 
206 158 143 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
204 139 161 
  1   2   3 
204 139 161 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3   4 
140  58 112 194 
  1   2   3   4 
140  58 112 194 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
  1   2   3 
150  85 133 
  1   2   3 
150  85 133 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
  1   2   3 
130 109 129 
  1   2   3 
130 109 129 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDISEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "RADIATIONTHERAPY"                      
[15] "HISTOLOGICALTYPE"                      
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "COMPLETENESS.OF.RESECTION"             
[18] "RACE"                                  
[19] "ETHNICITY"                             
[20] "BATCHNUMBER"                           

Input Data has 20 rows and 513 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
TCGA-5S-A9Q8 TCGA-A5-A0G1 TCGA-A5-A0G2 TCGA-A5-A0G3 TCGA-A5-A0G5 TCGA-A5-A0G9 
          33           NA         4549         1428         1126         2540 
TCGA-A5-A0GA TCGA-A5-A0GB TCGA-A5-A0GD TCGA-A5-A0GE TCGA-A5-A0GG TCGA-A5-A0GH 
          NA          997           98         3205         2656         2254 
TCGA-A5-A0GI TCGA-A5-A0GJ TCGA-A5-A0GM TCGA-A5-A0GN TCGA-A5-A0GP TCGA-A5-A0GQ 
        1750         2000         1841         1841         1416         1167 
TCGA-A5-A0GR TCGA-A5-A0GU TCGA-A5-A0GV TCGA-A5-A0GW TCGA-A5-A0GX TCGA-A5-A0R6 
        1120          860          633          706         2088          607 
TCGA-A5-A0R7 TCGA-A5-A0R8 TCGA-A5-A0R9 TCGA-A5-A0RA TCGA-A5-A0VO TCGA-A5-A0VP 
         535          596          749          884          364         1288 
TCGA-A5-A0VQ TCGA-A5-A1OF TCGA-A5-A1OG TCGA-A5-A1OH TCGA-A5-A1OJ TCGA-A5-A1OK 
         485          241          348         1105          292          244 
TCGA-A5-A2K2 TCGA-A5-A2K3 TCGA-A5-A2K4 TCGA-A5-A2K5 TCGA-A5-A2K7 TCGA-A5-A3LO 
        2769         1409           NA          162          157          223 
TCGA-A5-A3LP TCGA-AJ-A23M TCGA-AJ-A23N TCGA-AJ-A23O TCGA-AJ-A2QK TCGA-AJ-A2QL 
         455           36           33           60           12          602 
TCGA-AJ-A2QM TCGA-AJ-A2QN TCGA-AJ-A2QO TCGA-AJ-A3BD TCGA-AJ-A3BF TCGA-AJ-A3BG 
          26           73           92           15           34           23 
TCGA-AJ-A3BH TCGA-AJ-A3BI TCGA-AJ-A3BK TCGA-AJ-A3EJ TCGA-AJ-A3EK TCGA-AJ-A3EL 
          NA           68           51           NA          446          684 
TCGA-AJ-A3EM TCGA-AJ-A3I9 TCGA-AJ-A3IA TCGA-AJ-A3NC TCGA-AJ-A3NE TCGA-AJ-A3NF 
         677           39           28         1125          628           41 
TCGA-AJ-A3NG TCGA-AJ-A3NH TCGA-AJ-A3OJ TCGA-AJ-A3OK TCGA-AJ-A3OL TCGA-AJ-A3QS 
         475           23           59          485           57          513 
TCGA-AJ-A3TW TCGA-AJ-A5DW TCGA-AJ-A6NU TCGA-AJ-A8CT TCGA-AJ-A8CW TCGA-AP-A051 
          52           71           30           82            4         2545 
TCGA-AP-A052 TCGA-AP-A053 TCGA-AP-A054 TCGA-AP-A056 TCGA-AP-A059 TCGA-AP-A05A 
          NA          181           NA         2618          250         1199 
TCGA-AP-A05D TCGA-AP-A05H TCGA-AP-A05J TCGA-AP-A05N TCGA-AP-A05O TCGA-AP-A05P 
        1758         1385         1122          239          371          636 
TCGA-AP-A0L8 TCGA-AP-A0L9 TCGA-AP-A0LD TCGA-AP-A0LE TCGA-AP-A0LF TCGA-AP-A0LG 
          NA         3815         3589         3357          103         1921 
TCGA-AP-A0LH TCGA-AP-A0LI TCGA-AP-A0LJ TCGA-AP-A0LL TCGA-AP-A0LM TCGA-AP-A0LN 
          NA         2972          965         2554          825         2510 
TCGA-AP-A0LO TCGA-AP-A0LP TCGA-AP-A0LQ TCGA-AP-A0LS TCGA-AP-A0LT TCGA-AP-A0LV 
          NA         1875         2457         1918         1497          763 
TCGA-AP-A1DH TCGA-AP-A1DK TCGA-AP-A1DM TCGA-AP-A1DO TCGA-AP-A1DP TCGA-AP-A1DQ 
        2180         1836         1700          952           NA         1276 
TCGA-AP-A1DR TCGA-AP-A1DV TCGA-AP-A1E0 TCGA-AP-A1E1 TCGA-AP-A1E3 TCGA-AP-A1E4 
        1495          204          940          317          847          494 
TCGA-AP-A3K1 TCGA-AP-A5FX TCGA-AW-A1PO TCGA-AX-A05S TCGA-AX-A05T TCGA-AX-A05U 
         555         1026           17           NA          603          903 
TCGA-AX-A05W TCGA-AX-A05Y TCGA-AX-A05Z TCGA-AX-A060 TCGA-AX-A062 TCGA-AX-A063 
        2079         2191         1413         1075         1399         2025 
TCGA-AX-A064 TCGA-AX-A06B TCGA-AX-A06D TCGA-AX-A06F TCGA-AX-A06H TCGA-AX-A06J 
        1064         1640           NA         1554          833          913 
TCGA-AX-A06L TCGA-AX-A0IS TCGA-AX-A0IU TCGA-AX-A0IW TCGA-AX-A0IZ TCGA-AX-A0J0 
        1845         1065          868         1149         1333         1220 
TCGA-AX-A0J1 TCGA-AX-A1C4 TCGA-AX-A1C5 TCGA-AX-A1C7 TCGA-AX-A1C8 TCGA-AX-A1C9 
        2004          404          584          516          412          464 
TCGA-AX-A1CA TCGA-AX-A1CC TCGA-AX-A1CE TCGA-AX-A1CF TCGA-AX-A1CI TCGA-AX-A1CJ 
         617          378          610         2337         2207         1646 
TCGA-AX-A1CK TCGA-AX-A1CN TCGA-AX-A1CP TCGA-AX-A1CR TCGA-AX-A2H2 TCGA-AX-A2H4 
        2053          764         1107          337           NA           NA 
TCGA-AX-A2H5 TCGA-AX-A2H7 TCGA-AX-A2H8 TCGA-AX-A2HA TCGA-AX-A2HC TCGA-AX-A2HD 
        2167         1020         1861         2090         1016         1232 
TCGA-AX-A2HF TCGA-AX-A2HG TCGA-AX-A2HH TCGA-AX-A2HJ TCGA-AX-A2HK TCGA-AX-A2IN 
         589          801          540          831           NA           NA 
TCGA-AX-A2IO TCGA-AX-A3FS TCGA-AX-A3FT TCGA-AX-A3FW TCGA-AX-A3FX TCGA-AX-A3FZ 
        1177            7            3           10            4            6 
TCGA-AX-A3G1 TCGA-AX-A3G3 TCGA-AX-A3G4 TCGA-AX-A3G6 TCGA-AX-A3G7 TCGA-AX-A3G8 
          NA            1            4           NA            7           36 
TCGA-AX-A3G9 TCGA-AX-A3GB TCGA-AX-A3GI TCGA-B5-A0JN TCGA-B5-A0JR TCGA-B5-A0JS 
         254          440            4         2445         1731         1422 
TCGA-B5-A0JT TCGA-B5-A0JU TCGA-B5-A0JV TCGA-B5-A0JX TCGA-B5-A0JY TCGA-B5-A0JZ 
        1312         1483         1237         1360          990          871 
TCGA-B5-A0K0 TCGA-B5-A0K1 TCGA-B5-A0K2 TCGA-B5-A0K3 TCGA-B5-A0K4 TCGA-B5-A0K6 
         862          928          788          700          544          418 
TCGA-B5-A0K7 TCGA-B5-A0K8 TCGA-B5-A0K9 TCGA-B5-A0KB TCGA-B5-A11E TCGA-B5-A11F 
         520          543          335          125          265         5651 
TCGA-B5-A11G TCGA-B5-A11H TCGA-B5-A11I TCGA-B5-A11J TCGA-B5-A11L TCGA-B5-A11M 
        3448         2687         2303         1656         1396         1362 
TCGA-B5-A11N TCGA-B5-A11O TCGA-B5-A11P TCGA-B5-A11Q TCGA-B5-A11R TCGA-B5-A11S 
        1337         1232         1120          976         1019          832 
TCGA-B5-A11U TCGA-B5-A11V TCGA-B5-A11W TCGA-B5-A11X TCGA-B5-A11Y TCGA-B5-A11Z 
         509          595          593          596          560          528 
TCGA-B5-A121 TCGA-B5-A1MR TCGA-B5-A1MS TCGA-B5-A1MU TCGA-B5-A1MV TCGA-B5-A1MW 
         504         5835           NA           NA          438          447 
TCGA-B5-A1MX TCGA-B5-A1MY TCGA-B5-A1MZ TCGA-B5-A1N2 TCGA-B5-A3F9 TCGA-B5-A3FA 
         356           NA          465          389         3536         2929 
TCGA-B5-A3FB TCGA-B5-A3FC TCGA-B5-A3FD TCGA-B5-A3S1 TCGA-B5-A5OC TCGA-B5-A5OD 
        2397         1890         1007          153         1249         1038 
TCGA-B5-A5OE TCGA-BG-A0LW TCGA-BG-A0LX TCGA-BG-A0M0 TCGA-BG-A0M2 TCGA-BG-A0M3 
        1063          566          614          588          637         1071 
TCGA-BG-A0M4 TCGA-BG-A0M6 TCGA-BG-A0M7 TCGA-BG-A0M8 TCGA-BG-A0M9 TCGA-BG-A0MA 
        1064          241         1167         1110          860           NA 
TCGA-BG-A0MC TCGA-BG-A0MG TCGA-BG-A0MH TCGA-BG-A0MI TCGA-BG-A0MK TCGA-BG-A0MO 
        1263         1477         1930           NA           NA         1309 
TCGA-BG-A0MQ TCGA-BG-A0MS TCGA-BG-A0MT TCGA-BG-A0MU TCGA-BG-A0RY TCGA-BG-A0VT 
        1196          937          644          617          469          742 
TCGA-BG-A0VV TCGA-BG-A0VW TCGA-BG-A0VX TCGA-BG-A0VZ TCGA-BG-A0W1 TCGA-BG-A0W2 
         811          497         1043         1601         1607         1721 
TCGA-BG-A0YU TCGA-BG-A0YV TCGA-BG-A186 TCGA-BG-A187 TCGA-BG-A18A TCGA-BG-A18B 
         451          382          419          448          426          470 
TCGA-BG-A18C TCGA-BG-A220 TCGA-BG-A221 TCGA-BG-A222 TCGA-BG-A2AD TCGA-BG-A2AE 
         470          434           55          291         1085          721 
TCGA-BG-A2L7 TCGA-BG-A3EW TCGA-BG-A3PP TCGA-BK-A0C9 TCGA-BK-A0CA TCGA-BK-A0CB 
         612          344          207         1092         1064          189 
TCGA-BK-A0CC TCGA-BK-A139 TCGA-BK-A13B TCGA-BK-A13C TCGA-BK-A26L TCGA-BK-A4ZD 
         311          309          966          760          734          506 
TCGA-BK-A56F TCGA-BK-A6W3 TCGA-BK-A6W4 TCGA-BS-A0T9 TCGA-BS-A0TA TCGA-BS-A0TC 
         401          305          300           NA          714         2602 
TCGA-BS-A0TD TCGA-BS-A0TE TCGA-BS-A0TG TCGA-BS-A0TI TCGA-BS-A0TJ TCGA-BS-A0U5 
        2379           NA         2371         1882         2068         2935 
TCGA-BS-A0U7 TCGA-BS-A0U8 TCGA-BS-A0U9 TCGA-BS-A0UA TCGA-BS-A0UF TCGA-BS-A0UJ 
          NA         2963         2044         2687         2611         2506 
TCGA-BS-A0UL TCGA-BS-A0UM TCGA-BS-A0UT TCGA-BS-A0UV TCGA-BS-A0V4 TCGA-BS-A0V6 
        2481         2644         2212         2228         1810         1910 
TCGA-BS-A0V7 TCGA-BS-A0V8 TCGA-BS-A0VI TCGA-BS-A0WQ TCGA-D1-A0ZN TCGA-D1-A0ZO 
        1934         1507         1921         2022          512          602 
TCGA-D1-A0ZP TCGA-D1-A0ZQ TCGA-D1-A0ZR TCGA-D1-A0ZS TCGA-D1-A0ZU TCGA-D1-A0ZV 
         911          260           17          148          872          728 
TCGA-D1-A0ZZ TCGA-D1-A101 TCGA-D1-A102 TCGA-D1-A103 TCGA-D1-A15V TCGA-D1-A15W 
         686           53          135          669         1201          915 
TCGA-D1-A15X TCGA-D1-A15Z TCGA-D1-A160 TCGA-D1-A161 TCGA-D1-A162 TCGA-D1-A163 
         909           NA          112          892         1145          991 
TCGA-D1-A165 TCGA-D1-A167 TCGA-D1-A168 TCGA-D1-A169 TCGA-D1-A16B TCGA-D1-A16D 
          20          478         1098         1135         1106         1141 
TCGA-D1-A16E TCGA-D1-A16F TCGA-D1-A16G TCGA-D1-A16I TCGA-D1-A16J TCGA-D1-A16N 
        1119           80           NA           NA          910          945 
TCGA-D1-A16O TCGA-D1-A16Q TCGA-D1-A16R TCGA-D1-A16S TCGA-D1-A16V TCGA-D1-A16X 
        1023          324           21          568           43          111 
TCGA-D1-A16Y TCGA-D1-A174 TCGA-D1-A175 TCGA-D1-A176 TCGA-D1-A177 TCGA-D1-A179 
         532          594          202          917          548          206 
TCGA-D1-A17A TCGA-D1-A17B TCGA-D1-A17C TCGA-D1-A17D TCGA-D1-A17F TCGA-D1-A17H 
          48          213           30          926           39          852 
TCGA-D1-A17K TCGA-D1-A17L TCGA-D1-A17M TCGA-D1-A17N TCGA-D1-A17Q TCGA-D1-A17R 
         854          802          311           46           54           NA 
TCGA-D1-A17S TCGA-D1-A17T TCGA-D1-A17U TCGA-D1-A1NS TCGA-D1-A1NU TCGA-D1-A1NW 
         739           71          697           43          402           22 
TCGA-D1-A1NX TCGA-D1-A1NY TCGA-D1-A1NZ TCGA-D1-A1O0 TCGA-D1-A1O5 TCGA-D1-A1O7 
         555          513          548           63          458           32 
TCGA-D1-A1O8 TCGA-D1-A2G0 TCGA-D1-A2G5 TCGA-D1-A2G6 TCGA-D1-A2G7 TCGA-D1-A3DA 
          NA          107         1260           NA         1365            8 
TCGA-D1-A3DG TCGA-D1-A3DH TCGA-DF-A2KZ TCGA-DI-A0WH TCGA-DI-A1BU TCGA-DI-A1BY 
         130          125          826          496         1195         1114 
TCGA-DI-A1C3 TCGA-DI-A1NN TCGA-DI-A1NO TCGA-DI-A2QT TCGA-DI-A2QU TCGA-DI-A2QY 
         739         1076           NA           NA           NA         2797 
TCGA-E6-A1LX TCGA-E6-A1LZ TCGA-E6-A1M0 TCGA-E6-A2P8 TCGA-E6-A2P9 TCGA-E6-A8L9 
         711         1471          519           NA          203          740 
TCGA-EC-A1NJ TCGA-EC-A1QX TCGA-EC-A24G TCGA-EO-A1Y5 TCGA-EO-A1Y7 TCGA-EO-A1Y8 
         487          224          511          332          572         1147 
TCGA-EO-A22R TCGA-EO-A22S TCGA-EO-A22T TCGA-EO-A22U TCGA-EO-A22X TCGA-EO-A22Y 
         972         1066         1004          825         1752          754 
TCGA-EO-A2CG TCGA-EO-A2CH TCGA-EO-A3AS TCGA-EO-A3AU TCGA-EO-A3AV TCGA-EO-A3AY 
         985           NA         1046          589         1069          392 
TCGA-EO-A3AZ TCGA-EO-A3B1 TCGA-EO-A3KU TCGA-EO-A3KW TCGA-EY-A1G7 TCGA-EY-A1G8 
         826          820          677          497           NA           NA 
TCGA-EY-A1GC TCGA-EY-A1GD TCGA-EY-A1GE TCGA-EY-A1GF TCGA-EY-A1GH TCGA-EY-A1GI 
         138          248          741          826          710          710 
TCGA-EY-A1GJ TCGA-EY-A1GK TCGA-EY-A1GL TCGA-EY-A1GM TCGA-EY-A1GO TCGA-EY-A1GP 
         727          693          425          210          586          573 
TCGA-EY-A1GQ TCGA-EY-A1GR TCGA-EY-A1GS TCGA-EY-A1GT TCGA-EY-A1GU TCGA-EY-A1GV 
         544          536          459          490          378          481 
TCGA-EY-A1GW TCGA-EY-A1GX TCGA-EY-A1H0 TCGA-EY-A210 TCGA-EY-A212 TCGA-EY-A214 
         260          197          588          383          110          438 
TCGA-EY-A215 TCGA-EY-A2OM TCGA-EY-A2ON TCGA-EY-A2OO TCGA-EY-A2OP TCGA-EY-A2OQ 
         574          694          409         1392          944          885 
TCGA-EY-A3L3 TCGA-EY-A3QX TCGA-EY-A4KR TCGA-EY-A547 TCGA-EY-A548 TCGA-EY-A549 
         832          421          196          545           65          212 
TCGA-EY-A54A TCGA-EY-A5W2 TCGA-EY-A72D TCGA-FI-A2CX TCGA-FI-A2CY TCGA-FI-A2D0 
         113          161          179         1217         1064         1034 
TCGA-FI-A2D2 TCGA-FI-A2D4 TCGA-FI-A2D5 TCGA-FI-A2D6 TCGA-FI-A2EU TCGA-FI-A2EW 
        1095           NA           NA          273         2941         1795 
TCGA-FI-A2EX TCGA-FI-A2EY TCGA-FI-A2F4 TCGA-FI-A2F8 TCGA-FI-A2F9 TCGA-FI-A3PV 
         276           NA          881          761          791           NA 
TCGA-FI-A3PX TCGA-H5-A2HR TCGA-K6-A3WQ TCGA-KJ-A3U4 TCGA-PG-A5BC TCGA-PG-A6IB 
        1369           53          400           74          329          277 
TCGA-PG-A7D5 TCGA-PG-A914 TCGA-PG-A915 TCGA-PG-A916 TCGA-PG-A917 TCGA-QF-A5YS 
         729          393          213          342          212          573 
TCGA-QF-A5YT TCGA-QS-A5YQ TCGA-QS-A5YR 
        1215          128          168 
Variable 1:'AGE':	nDistinctValues=59,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=59,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=418,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=17,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'RACE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'ETHNICITY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 20:'BATCH.NUMBER':	nDistinctValues=29,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "HISTOLOGICAL.TYPE"                     
[3] "RADIATIONS.RADIATION.REGIMENINDICATION"
[4] "COMPLETENESS.OF.RESECTION"             
[5] "RACE"                                  
[6] "ETHNICITY"                             
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 513 columns, 1 survival variables, and 6 non-survival variables.
AGE, nv=59, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
RACE, nv=5, binary=FALSE, numeric=FALSE
ETHNICITY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 12  2
  subtype2 14  4
  subtype3 11  1
  subtype4  8  2
subtype1 subtype2 subtype3 subtype4 
      14       18       12       10 
subtype1 subtype2 subtype3 subtype4 
       2        4        1        2 
$subtype1
TCGA-A5-A0G2 TCGA-A5-A0G5 TCGA-A5-A0GA TCGA-A5-A0GB TCGA-AP-A051 TCGA-AP-A0LT 
      149.56        37.02        17.85        32.78        83.67        49.22 
TCGA-AX-A05S TCGA-AX-A05Z TCGA-AX-A060 TCGA-AX-A063 TCGA-AX-A064 TCGA-AX-A06F 
       13.58        46.45        35.34        66.58        34.98        51.09 
TCGA-B5-A0JR TCGA-B5-A0JZ 
       56.91        28.64 

$subtype2
TCGA-A5-A0G3 TCGA-A5-A0GH TCGA-AP-A052 TCGA-AP-A053 TCGA-AP-A054 TCGA-AP-A056 
       46.95        74.10        21.99         5.95        23.31        86.07 
TCGA-AP-A05A TCGA-AP-A05D TCGA-AP-A05H TCGA-AP-A05J TCGA-AP-A0L8 TCGA-AP-A0L9 
       39.42        57.80        45.53        36.89        48.79       125.42 
TCGA-AP-A0LD TCGA-AX-A06B TCGA-AX-A0IW TCGA-AX-A0J1 TCGA-B5-A0K4 TCGA-BK-A0CC 
      117.99        53.92        37.78        65.88        17.88        10.22 

$subtype3
TCGA-A5-A0GE TCGA-A5-A0GP TCGA-AP-A05P TCGA-AP-A0LH TCGA-AP-A0LJ TCGA-AX-A05T 
      105.37        46.55        20.91        36.36        31.73        19.82 
TCGA-AX-A05U TCGA-AX-A05W TCGA-AX-A05Y TCGA-AX-A06J TCGA-B5-A0K1 TCGA-BK-A0C9 
       29.69        68.35        72.03        30.02        30.51        35.90 

$subtype4
TCGA-A5-A0GM TCGA-A5-A0GU TCGA-AP-A05N TCGA-AP-A0LG TCGA-AP-A0LN TCGA-AP-A0LV 
       60.53        28.27         7.86        63.16        82.52        25.08 
TCGA-AX-A062 TCGA-B5-A0K0 TCGA-BG-A0LW TCGA-BG-A0MI 
       45.99        28.34        18.61        23.47 

subtype1 subtype2 subtype3 subtype4 
   13.58     5.95    19.82     7.86 
subtype1 subtype2 subtype3 subtype4 
  149.56   125.42   105.37    82.52 
subtype1 subtype2 subtype3 subtype4 
  41.735   46.240   33.815   28.305 
[1] "13.6 - 149.6 (41.7)" "6.0 - 125.4 (46.2)"  "19.8 - 105.4 (33.8)"
[4] "7.9 - 82.5 (28.3)"  
D1V2, continuous
          vv
clus       ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA
  subtype1                                      12
  subtype2                                       8
  subtype3                                      11
  subtype4                                      10
          vv
clus       MIXED SEROUS AND ENDOMETRIOID SEROUS ENDOMETRIAL ADENOCARCINOMA
  subtype1                             0                                 2
  subtype2                             0                                10
  subtype3                             1                                 0
  subtype4                             0                                 0
D1V3, multiclass
                                         clus
vv                                        subtype1 subtype2 subtype3 subtype4
  ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA       12        8       11       10
  MIXED SEROUS AND ENDOMETRIOID                  0        0        1        0
  SEROUS ENDOMETRIAL ADENOCARCINOMA              2       10        0        0
[1] 3 4
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V4, binary
          cls
clus        0  1
  subtype1  8  6
  subtype2 12  6
  subtype3  3  9
  subtype4  2  8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8    6
  subtype2   12    6
  subtype3    3    9
  subtype4    2    8
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         8       12        3        2
  YES        6        6        9        8
[1] 2 4
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       R0 R1 R2 RX
  subtype1  8  2  1  0
  subtype2 14  1  1  1
  subtype3 10  1  0  0
  subtype4  9  0  0  0
D1V5, multiclass
    clus
vv   subtype1 subtype2 subtype3 subtype4
  R0        8       14       10        9
  R1        2        1        1        0
  R2        1        1        0        0
  RX        0        1        0        0
[1] 4 4
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       AMERICAN INDIAN OR ALASKA NATIVE ASIAN BLACK OR AFRICAN AMERICAN
  subtype1                                1     1                         1
  subtype2                                0     0                         4
  subtype3                                1     3                         0
  subtype4                                0     0                         1
          vv
clus       WHITE
  subtype1    10
  subtype2    13
  subtype3     8
  subtype4     9
D1V6, multiclass
                                  clus
vv                                 subtype1 subtype2 subtype3 subtype4
  AMERICAN INDIAN OR ALASKA NATIVE        1        0        1        0
  ASIAN                                   1        0        3        0
  BLACK OR AFRICAN AMERICAN               1        4        0        1
  WHITE                                  10       13        8        9
[1] 4 4
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V7, binary
          cls
clus       0 1
  subtype1 1 6
  subtype2 1 6
  subtype3 0 9
  subtype4 0 3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1    6
  subtype2    1    6
  subtype3    0    9
  subtype4    0    3
                        clus
vv                       subtype1 subtype2 subtype3 subtype4
  HISPANIC OR LATINO            1        1        0        0
  NOT HISPANIC OR LATINO        6        6        9        3
[1] 2 4
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2       0  1
  subtype1 13  1
  subtype2  7  3
  subtype3  4  3
  subtype4  7  0
  subtype5 14  2
subtype1 subtype2 subtype3 subtype4 subtype5 
      14       10        7        7       16 
subtype1 subtype2 subtype3 subtype4 subtype5 
       1        3        3        0        2 
$subtype1
TCGA-A5-A0G2 TCGA-A5-A0G5 TCGA-A5-A0GH TCGA-A5-A0GM TCGA-AP-A054 TCGA-AP-A056 
      149.56        37.02        74.10        60.53        23.31        86.07 
TCGA-AP-A05P TCGA-AP-A0LD TCGA-AX-A05Y TCGA-AX-A06B TCGA-AX-A06F TCGA-AX-A0J1 
       20.91       117.99        72.03        53.92        51.09        65.88 
TCGA-B5-A0K4 TCGA-BK-A0CC 
       17.88        10.22 

$subtype2
TCGA-A5-A0G3 TCGA-AP-A052 TCGA-AP-A053 TCGA-AP-A05A TCGA-AP-A05D TCGA-AP-A05H 
       46.95        21.99         5.95        39.42        57.80        45.53 
TCGA-AP-A05J TCGA-AP-A0L8 TCGA-AP-A0L9 TCGA-AX-A0IW 
       36.89        48.79       125.42        37.78 

$subtype3
TCGA-A5-A0GA TCGA-A5-A0GP TCGA-AP-A0LH TCGA-AX-A05S TCGA-AX-A05W TCGA-AX-A05Z 
       17.85        46.55        36.36        13.58        68.35        46.45 
TCGA-AX-A064 
       34.98 

$subtype4
TCGA-A5-A0GB TCGA-AP-A051 TCGA-AP-A0LT TCGA-AX-A060 TCGA-AX-A063 TCGA-B5-A0JR 
       32.78        83.67        49.22        35.34        66.58        56.91 
TCGA-B5-A0JZ 
       28.64 

$subtype5
TCGA-A5-A0GE TCGA-A5-A0GU TCGA-AP-A05N TCGA-AP-A0LG TCGA-AP-A0LJ TCGA-AP-A0LN 
      105.37        28.27         7.86        63.16        31.73        82.52 
TCGA-AP-A0LV TCGA-AX-A05T TCGA-AX-A05U TCGA-AX-A062 TCGA-AX-A06J TCGA-B5-A0K0 
       25.08        19.82        29.69        45.99        30.02        28.34 
TCGA-B5-A0K1 TCGA-BG-A0LW TCGA-BG-A0MI TCGA-BK-A0C9 
       30.51        18.61        23.47        35.90 

subtype1 subtype2 subtype3 subtype4 subtype5 
   10.22     5.95    13.58    28.64     7.86 
subtype1 subtype2 subtype3 subtype4 subtype5 
  149.56   125.42    68.35    83.67   105.37 
subtype1 subtype2 subtype3 subtype4 subtype5 
  57.225   42.475   36.360   49.220   29.855 
[1] "10.2 - 149.6 (57.2)" "6.0 - 125.4 (42.5)"  "13.6 - 68.3 (36.4)" 
[4] "28.6 - 83.7 (49.2)"  "7.9 - 105.4 (29.9)" 
D2V2, continuous
          vv
clus       ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA
  subtype1                                      11
  subtype2                                       1
  subtype3                                       6
  subtype4                                       7
  subtype5                                      16
          vv
clus       MIXED SEROUS AND ENDOMETRIOID SEROUS ENDOMETRIAL ADENOCARCINOMA
  subtype1                             0                                 3
  subtype2                             0                                 9
  subtype3                             1                                 0
  subtype4                             0                                 0
  subtype5                             0                                 0
D2V3, multiclass
                                         clus
vv                                        subtype1 subtype2 subtype3 subtype4
  ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA       11        1        6        7
  MIXED SEROUS AND ENDOMETRIOID                  0        0        1        0
  SEROUS ENDOMETRIAL ADENOCARCINOMA              3        9        0        0
                                         clus
vv                                        subtype5
  ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA       16
  MIXED SEROUS AND ENDOMETRIOID                  0
  SEROUS ENDOMETRIAL ADENOCARCINOMA              0
[1] 3 5
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V4, binary
          cls
clus        0  1
  subtype1  7  7
  subtype2  7  3
  subtype3  2  5
  subtype4  5  2
  subtype5  4 12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    7
  subtype2    7    3
  subtype3    2    5
  subtype4    5    2
  subtype5    4   12
     clus
vv    subtype1 subtype2 subtype3 subtype4 subtype5
  NO         7        7        2        5        4
  YES        7        3        5        2       12
[1] 2 5
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       R0 R1 R2 RX
  subtype1 11  1  0  1
  subtype2  9  0  1  0
  subtype3  4  1  1  0
  subtype4  4  1  0  0
  subtype5 13  1  0  0
D2V5, multiclass
    clus
vv   subtype1 subtype2 subtype3 subtype4 subtype5
  R0       11        9        4        4       13
  R1        1        0        1        1        1
  R2        0        1        1        0        0
  RX        1        0        0        0        0
[1] 4 5
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       AMERICAN INDIAN OR ALASKA NATIVE ASIAN BLACK OR AFRICAN AMERICAN
  subtype1                                0     2                         2
  subtype2                                0     0                         3
  subtype3                                0     1                         0
  subtype4                                1     0                         0
  subtype5                                1     1                         1
          vv
clus       WHITE
  subtype1     9
  subtype2     7
  subtype3     5
  subtype4     6
  subtype5    13
D2V6, multiclass
                                  clus
vv                                 subtype1 subtype2 subtype3 subtype4 subtype5
  AMERICAN INDIAN OR ALASKA NATIVE        0        0        0        1        1
  ASIAN                                   2        0        1        0        1
  BLACK OR AFRICAN AMERICAN               2        3        0        0        1
  WHITE                                   9        7        5        6       13
[1] 4 5
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V7, binary
          cls
clus       0 1
  subtype1 1 9
  subtype2 0 2
  subtype3 1 5
  subtype4 0 2
  subtype5 0 6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1    9
  subtype2    0    2
  subtype3    1    5
  subtype4    0    2
  subtype5    0    6
                        clus
vv                       subtype1 subtype2 subtype3 subtype4 subtype5
  HISPANIC OR LATINO            1        0        1        0        0
  NOT HISPANIC OR LATINO        9        2        5        2        6
[1] 2 5
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2        0   1
  subtype1 121  30
  subtype2 268  21
  subtype3  16   3
  subtype4   9   0
  subtype5  29   6
subtype1 subtype2 subtype3 subtype4 subtype5 
     151      289       19        9       35 
subtype1 subtype2 subtype3 subtype4 subtype5 
      30       21        3        0        6 
$subtype1
TCGA-A5-A0G5 TCGA-A5-A0GJ TCGA-A5-A0GR TCGA-A5-A0R6 TCGA-A5-A1OG TCGA-A5-A1OH 
       37.02        65.75        36.82        19.96        11.44        36.33 
TCGA-A5-A2K2 TCGA-A5-A2K4 TCGA-A5-A3LP TCGA-AJ-A23M TCGA-AJ-A23N TCGA-AJ-A2QK 
       91.04        28.64        14.96         1.18         1.08         0.39 
TCGA-AJ-A2QM TCGA-AJ-A3BD TCGA-AJ-A3BF TCGA-AJ-A3BI TCGA-AJ-A3EJ TCGA-AJ-A3EM 
        0.85         0.49         1.12         2.24         1.64        22.26 
TCGA-AJ-A3IA TCGA-AJ-A3NF TCGA-AJ-A3NH TCGA-AJ-A3QS TCGA-AJ-A3TW TCGA-AJ-A6NU 
        0.92         1.35         0.76        16.87         1.71         0.99 
TCGA-AP-A052 TCGA-AP-A053 TCGA-AP-A05A TCGA-AP-A05D TCGA-AP-A05H TCGA-AP-A05J 
       21.99         5.95        39.42        57.80        45.53        36.89 
TCGA-AP-A0L8 TCGA-AP-A0L9 TCGA-AP-A0LF TCGA-AP-A0LI TCGA-AP-A1DQ TCGA-AP-A3K1 
       48.79       125.42         3.39        97.71        41.95        18.25 
TCGA-AP-A5FX TCGA-AW-A1PO TCGA-AX-A06B TCGA-AX-A0IU TCGA-AX-A0IW TCGA-AX-A1C7 
       33.73         0.56        53.92        28.54        37.78        16.96 
TCGA-AX-A1C8 TCGA-AX-A1CA TCGA-AX-A1CF TCGA-AX-A1CP TCGA-AX-A1CR TCGA-AX-A2H2 
       13.55        20.28        76.83        36.39        11.08         4.77 
TCGA-AX-A2H4 TCGA-AX-A2H5 TCGA-AX-A2H8 TCGA-AX-A2HF TCGA-AX-A2HK TCGA-AX-A2IO 
       30.12        71.24        61.18        19.36         2.96        38.70 
TCGA-AX-A3FW TCGA-AX-A3FX TCGA-AX-A3G1 TCGA-AX-A3G3 TCGA-AX-A3G4 TCGA-AX-A3G7 
        0.33         0.13        20.52         0.03         0.13         0.23 
TCGA-AX-A3GI TCGA-B5-A0JN TCGA-B5-A0K3 TCGA-B5-A0K8 TCGA-B5-A0KB TCGA-B5-A11I 
        0.13        80.38        23.01        17.85         4.11        75.72 
TCGA-B5-A1MS TCGA-B5-A1MU TCGA-B5-A1MY TCGA-B5-A1N2 TCGA-B5-A3FD TCGA-B5-A3S1 
      102.31        50.89        11.87        12.79        33.11         5.03 
TCGA-B5-A5OD TCGA-B5-A5OE TCGA-BG-A0M6 TCGA-BG-A0M8 TCGA-BG-A0YV TCGA-BG-A3PP 
       34.13        34.95         7.92        36.49        12.56         6.81 
TCGA-BK-A0CC TCGA-BK-A139 TCGA-BK-A26L TCGA-BS-A0U9 TCGA-BS-A0V8 TCGA-D1-A0ZP 
       10.22        10.16        24.13        67.20        49.55        29.95 
TCGA-D1-A0ZZ TCGA-D1-A15V TCGA-D1-A16G TCGA-D1-A16I TCGA-D1-A16N TCGA-D1-A16S 
       22.55        39.48        27.42        11.51        31.07        18.67 
TCGA-D1-A179 TCGA-D1-A17K TCGA-D1-A1NU TCGA-D1-A1NW TCGA-D1-A1NX TCGA-D1-A1O0 
        6.77        28.08        13.22         0.72        18.25         2.07 
TCGA-D1-A2G7 TCGA-D1-A3DG TCGA-D1-A3DH TCGA-DI-A1NN TCGA-DI-A1NO TCGA-DI-A2QT 
       44.88         4.27         4.11        35.38         9.37        12.39 
TCGA-DI-A2QU TCGA-DI-A2QY TCGA-E6-A1LZ TCGA-E6-A8L9 TCGA-EO-A1Y5 TCGA-EO-A1Y7 
       31.10        91.96        48.36        24.33        10.92        18.81 
TCGA-EO-A1Y8 TCGA-EO-A2CG TCGA-EO-A2CH TCGA-EO-A3AS TCGA-EO-A3AZ TCGA-EO-A3B1 
       37.71        32.38        19.40        34.39        27.16        26.96 
TCGA-EO-A3KU TCGA-EO-A3KW TCGA-EY-A1GC TCGA-EY-A1GJ TCGA-EY-A1GM TCGA-EY-A1GR 
       22.26        16.34         4.54        23.90         6.90        17.62 
TCGA-EY-A1GS TCGA-EY-A1GV TCGA-EY-A1GW TCGA-EY-A210 TCGA-EY-A212 TCGA-EY-A214 
       15.09        15.81         8.55        12.59         3.62        14.40 
TCGA-EY-A2ON TCGA-EY-A2OQ TCGA-EY-A3L3 TCGA-EY-A3QX TCGA-EY-A4KR TCGA-EY-A547 
       13.45        29.10        27.35        13.84         6.44        17.92 
TCGA-EY-A54A TCGA-EY-A72D TCGA-FI-A2CY TCGA-FI-A2D2 TCGA-FI-A2EU TCGA-FI-A2EW 
        3.72         5.88        34.98        36.00        96.69        59.01 
TCGA-FI-A2EX TCGA-FI-A2EY TCGA-FI-A2F8 TCGA-FI-A2F9 TCGA-FI-A3PV TCGA-FI-A3PX 
        9.07        28.93        25.02        26.01        41.06        45.01 
TCGA-H5-A2HR TCGA-K6-A3WQ TCGA-KJ-A3U4 TCGA-PG-A5BC TCGA-PG-A7D5 TCGA-PG-A914 
        1.74        13.15         2.43        10.82        23.97        12.92 
TCGA-PG-A915 
        7.00 

$subtype2
TCGA-5S-A9Q8 TCGA-A5-A0G1 TCGA-A5-A0G9 TCGA-A5-A0GA TCGA-A5-A0GB TCGA-A5-A0GD 
        1.08       106.88        83.51        17.85        32.78         3.22 
TCGA-A5-A0GE TCGA-A5-A0GG TCGA-A5-A0GH TCGA-A5-A0GI TCGA-A5-A0GM TCGA-A5-A0GP 
      105.37        87.32        74.10        57.53        60.53        46.55 
TCGA-A5-A0GQ TCGA-A5-A0GU TCGA-A5-A0GW TCGA-A5-A0GX TCGA-A5-A0R8 TCGA-A5-A0R9 
       38.37        28.27        23.21        68.65        19.59        24.62 
TCGA-A5-A0RA TCGA-A5-A0VP TCGA-A5-A0VQ TCGA-A5-A1OF TCGA-A5-A1OJ TCGA-A5-A1OK 
       29.06        42.35        15.95         7.92         9.60         8.02 
TCGA-A5-A2K5 TCGA-A5-A2K7 TCGA-AJ-A23O TCGA-AJ-A2QL TCGA-AJ-A2QO TCGA-AJ-A3BG 
        5.33         5.16         1.97        19.79         3.02         0.76 
TCGA-AJ-A3EK TCGA-AJ-A3EL TCGA-AJ-A3NC TCGA-AJ-A3NE TCGA-AJ-A3OJ TCGA-AJ-A3OK 
       14.66        22.49        36.99        20.65         1.94        15.95 
TCGA-AJ-A5DW TCGA-AJ-A8CT TCGA-AP-A051 TCGA-AP-A054 TCGA-AP-A056 TCGA-AP-A059 
        2.33         2.70        83.67        23.31        86.07         8.22 
TCGA-AP-A05N TCGA-AP-A05O TCGA-AP-A05P TCGA-AP-A0LD TCGA-AP-A0LE TCGA-AP-A0LG 
        7.86        12.20        20.91       117.99       110.37        63.16 
TCGA-AP-A0LH TCGA-AP-A0LJ TCGA-AP-A0LL TCGA-AP-A0LM TCGA-AP-A0LN TCGA-AP-A0LP 
       36.36        31.73        83.97        27.12        82.52        61.64 
TCGA-AP-A0LQ TCGA-AP-A0LS TCGA-AP-A0LT TCGA-AP-A0LV TCGA-AP-A1DH TCGA-AP-A1DK 
       80.78        63.06        49.22        25.08        71.67        60.36 
TCGA-AP-A1DM TCGA-AP-A1DP TCGA-AP-A1DR TCGA-AP-A1DV TCGA-AP-A1E0 TCGA-AP-A1E1 
       55.89        35.54        49.15         6.71        30.90        10.42 
TCGA-AP-A1E3 TCGA-AP-A1E4 TCGA-AX-A05S TCGA-AX-A05T TCGA-AX-A05U TCGA-AX-A05Y 
       27.85        16.24        13.58        19.82        29.69        72.03 
TCGA-AX-A05Z TCGA-AX-A060 TCGA-AX-A062 TCGA-AX-A063 TCGA-AX-A064 TCGA-AX-A06D 
       46.45        35.34        45.99        66.58        34.98        12.26 
TCGA-AX-A06F TCGA-AX-A06H TCGA-AX-A06J TCGA-AX-A06L TCGA-AX-A0IS TCGA-AX-A0IZ 
       51.09        27.39        30.02        60.66        35.01        43.82 
TCGA-AX-A0J0 TCGA-AX-A0J1 TCGA-AX-A1C4 TCGA-AX-A1C5 TCGA-AX-A1C9 TCGA-AX-A1CC 
       40.11        65.88        13.28        19.20        15.25        12.43 
TCGA-AX-A1CE TCGA-AX-A1CI TCGA-AX-A1CJ TCGA-AX-A1CK TCGA-AX-A1CN TCGA-AX-A2HA 
       20.05        72.56        54.12        67.50        25.12        68.71 
TCGA-AX-A2HC TCGA-AX-A2HD TCGA-AX-A2HG TCGA-AX-A2HH TCGA-AX-A2HJ TCGA-AX-A2IN 
       33.40        40.50        26.33        17.75        27.32        31.13 
TCGA-AX-A3FS TCGA-AX-A3FT TCGA-AX-A3G8 TCGA-AX-A3G9 TCGA-AX-A3GB TCGA-B5-A0JR 
        0.23         0.10         1.18         8.35        14.47        56.91 
TCGA-B5-A0JS TCGA-B5-A0JU TCGA-B5-A0JV TCGA-B5-A0JX TCGA-B5-A0JY TCGA-B5-A0JZ 
       46.75        48.76        40.67        44.71        32.55        28.64 
TCGA-B5-A0K0 TCGA-B5-A0K1 TCGA-B5-A0K2 TCGA-B5-A0K6 TCGA-B5-A0K7 TCGA-B5-A0K9 
       28.34        30.51        25.91        13.74        17.10        11.01 
TCGA-B5-A11F TCGA-B5-A11G TCGA-B5-A11H TCGA-B5-A11J TCGA-B5-A11L TCGA-B5-A11N 
      185.79       113.36        88.34        54.44        45.90        43.96 
TCGA-B5-A11O TCGA-B5-A11U TCGA-B5-A11W TCGA-B5-A11Y TCGA-B5-A11Z TCGA-B5-A121 
       40.50        16.73        19.50        18.41        17.36        16.57 
TCGA-B5-A1MR TCGA-B5-A1MV TCGA-B5-A1MW TCGA-B5-A1MX TCGA-B5-A1MZ TCGA-B5-A3FA 
      191.84        14.40        14.70        11.70        15.29        96.30 
TCGA-B5-A3FB TCGA-B5-A3FC TCGA-B5-A5OC TCGA-BG-A0LW TCGA-BG-A0LX TCGA-BG-A0M3 
       78.81        62.14        41.06        18.61        20.19        35.21 
TCGA-BG-A0M7 TCGA-BG-A0M9 TCGA-BG-A0MA TCGA-BG-A0MC TCGA-BG-A0MG TCGA-BG-A0MI 
       38.37        28.27        10.72        41.52        48.56        23.47 
TCGA-BG-A0MK TCGA-BG-A0MO TCGA-BG-A0MQ TCGA-BG-A0MU TCGA-BG-A0VV TCGA-BG-A0VW 
       43.30        43.04        39.32        20.28        26.66        16.34 
TCGA-BG-A0VX TCGA-BG-A0VZ TCGA-BG-A0W2 TCGA-BG-A0YU TCGA-BG-A186 TCGA-BG-A187 
       34.29        52.64        56.58        14.83        13.78        14.73 
TCGA-BG-A18A TCGA-BG-A18B TCGA-BG-A220 TCGA-BG-A222 TCGA-BG-A2AD TCGA-BG-A2L7 
       14.01        15.45        14.27         9.57        35.67        20.12 
TCGA-BG-A3EW TCGA-BK-A0CA TCGA-BK-A0CB TCGA-BK-A13B TCGA-BK-A13C TCGA-BK-A56F 
       11.31        34.98         6.21        31.76        24.99        13.18 
TCGA-BK-A6W3 TCGA-BK-A6W4 TCGA-BS-A0T9 TCGA-BS-A0TA TCGA-BS-A0TC TCGA-BS-A0TD 
       10.03         9.86        46.95        23.47        85.55        78.21 
TCGA-BS-A0TG TCGA-BS-A0TJ TCGA-BS-A0U5 TCGA-BS-A0U7 TCGA-BS-A0U8 TCGA-BS-A0UA 
       77.95        67.99        96.49        30.74        97.41        88.34 
TCGA-BS-A0UF TCGA-BS-A0UJ TCGA-BS-A0UL TCGA-BS-A0V4 TCGA-BS-A0V6 TCGA-BS-A0V7 
       85.84        82.39        81.57        59.51        62.79        63.58 
TCGA-BS-A0VI TCGA-BS-A0WQ TCGA-D1-A0ZN TCGA-D1-A0ZO TCGA-D1-A0ZR TCGA-D1-A0ZS 
       63.16        66.48        16.83        19.79         0.56         4.87 
TCGA-D1-A0ZV TCGA-D1-A101 TCGA-D1-A103 TCGA-D1-A15W TCGA-D1-A15X TCGA-D1-A15Z 
       23.93         1.74        21.99        30.08        29.88         1.91 
TCGA-D1-A160 TCGA-D1-A161 TCGA-D1-A163 TCGA-D1-A167 TCGA-D1-A16B TCGA-D1-A16D 
        3.68        29.33        32.58        15.72        36.36        37.51 
TCGA-D1-A16E TCGA-D1-A16J TCGA-D1-A16O TCGA-D1-A16Q TCGA-D1-A16R TCGA-D1-A16X 
       36.79        29.92        33.63        10.65         0.69         3.65 
TCGA-D1-A16Y TCGA-D1-A174 TCGA-D1-A175 TCGA-D1-A176 TCGA-D1-A177 TCGA-D1-A17A 
       17.49        19.53         6.64        30.15        18.02         1.58 
TCGA-D1-A17B TCGA-D1-A17C TCGA-D1-A17D TCGA-D1-A17F TCGA-D1-A17H TCGA-D1-A17L 
        7.00         0.99        30.44         1.28        28.01        26.37 
TCGA-D1-A17M TCGA-D1-A17N TCGA-D1-A17Q TCGA-D1-A17S TCGA-D1-A17T TCGA-D1-A17U 
       10.22         1.51         1.78        24.30         2.33        22.92 
TCGA-D1-A1NS TCGA-D1-A1NY TCGA-D1-A1NZ TCGA-D1-A1O5 TCGA-D1-A1O7 TCGA-D1-A1O8 
        1.41        16.87        18.02        15.06         1.05         3.95 
TCGA-D1-A2G0 TCGA-D1-A3DA TCGA-DF-A2KZ TCGA-DI-A0WH TCGA-DI-A1BU TCGA-DI-A1BY 
        3.52         0.26        27.16        16.31        39.29        36.62 
TCGA-DI-A1C3 TCGA-E6-A1LX TCGA-E6-A2P8 TCGA-E6-A2P9 TCGA-EC-A1NJ TCGA-EC-A1QX 
       24.30        23.38         2.37         6.67        16.01         7.36 
TCGA-EC-A24G TCGA-EO-A22R TCGA-EO-A22S TCGA-EO-A22T TCGA-EO-A22U TCGA-EO-A22X 
       16.80        31.96        35.05        33.01        27.12        57.60 
TCGA-EO-A3AU TCGA-EO-A3AV TCGA-EO-A3AY TCGA-EY-A1G8 TCGA-EY-A1GD TCGA-EY-A1GE 
       19.36        35.15        12.89        14.99         8.15        24.36 
TCGA-EY-A1GF TCGA-EY-A1GH TCGA-EY-A1GI TCGA-EY-A1GK TCGA-EY-A1GL TCGA-EY-A1GT 
       27.16        23.34        23.34        22.78        13.97        16.11 
TCGA-EY-A1GU TCGA-EY-A1H0 TCGA-EY-A215 TCGA-EY-A2OM TCGA-EY-A2OP TCGA-EY-A548 
       12.43        19.33        18.87        22.82        31.04         2.14 
TCGA-EY-A5W2 TCGA-FI-A2CX TCGA-FI-A2D0 TCGA-FI-A2D5 TCGA-FI-A2D6 TCGA-FI-A2F4 
        5.29        40.01        33.99        13.84         8.98        28.96 
TCGA-PG-A6IB TCGA-PG-A916 TCGA-PG-A917 TCGA-QF-A5YS TCGA-QF-A5YT TCGA-QS-A5YQ 
        9.11        11.24         6.97        18.84        39.95         4.21 
TCGA-QS-A5YR 
        5.52 

$subtype3
TCGA-A5-A0G2 TCGA-A5-A0GV TCGA-A5-A2K3 TCGA-AJ-A2QN TCGA-AX-A05W TCGA-AX-A3FZ 
      149.56        20.81        46.32         2.40        68.35         0.20 
TCGA-B5-A0JT TCGA-B5-A11P TCGA-B5-A3F9 TCGA-BG-A0MS TCGA-BG-A0VT TCGA-BG-A18C 
       43.13        36.82       116.25        30.81        24.39        15.45 
TCGA-BG-A2AE TCGA-BS-A0TE TCGA-BS-A0TI TCGA-BS-A0UT TCGA-D1-A169 TCGA-D1-A16V 
       23.70         4.80        61.87        72.72        37.32         1.41 
TCGA-EY-A1G7 
        6.21 

$subtype4
TCGA-A5-A0GN TCGA-AP-A1DO TCGA-BG-A0MT TCGA-BG-A0RY TCGA-BG-A0W1 TCGA-D1-A0ZQ 
       60.53        31.30        21.17        15.42        52.83         8.55 
TCGA-EY-A1GO TCGA-EY-A1GP TCGA-EY-A2OO 
       19.27        18.84        45.76 

$subtype5
TCGA-A5-A0R7 TCGA-A5-A3LO TCGA-AJ-A3BK TCGA-AJ-A3I9 TCGA-AJ-A3NG TCGA-AJ-A3OL 
       17.59         7.33         1.68         1.28        15.62         1.87 
TCGA-AJ-A8CW TCGA-AP-A0LO TCGA-AX-A2H7 TCGA-B5-A0K4 TCGA-B5-A11E TCGA-B5-A11Q 
        0.13        33.40        33.53        17.88         8.71        32.09 
TCGA-B5-A11R TCGA-B5-A11S TCGA-B5-A11V TCGA-BG-A0M0 TCGA-BG-A0M2 TCGA-BG-A0M4 
       33.50        27.35        19.56        19.33        20.94        34.98 
TCGA-BG-A221 TCGA-BK-A0C9 TCGA-BK-A4ZD TCGA-BS-A0UV TCGA-D1-A0ZU TCGA-D1-A102 
        1.81        35.90        16.64        73.25        28.67         4.44 
TCGA-D1-A165 TCGA-D1-A168 TCGA-D1-A17R TCGA-D1-A2G5 TCGA-D1-A2G6 TCGA-E6-A1M0 
        0.66        36.10        11.15        41.42         8.48        17.06 
TCGA-EO-A22Y TCGA-EY-A1GQ TCGA-EY-A1GX TCGA-EY-A549 TCGA-FI-A2D4 
       24.79        17.88         6.48         6.97         7.99 

subtype1 subtype2 subtype3 subtype4 subtype5 
    0.03     0.10     0.20     8.55     0.13 
subtype1 subtype2 subtype3 subtype4 subtype5 
  125.42   191.84   149.56    60.53    73.25 
subtype1 subtype2 subtype3 subtype4 subtype5 
   18.67    24.99    30.81    21.17    17.59 
[1] "0.0 - 125.4 (18.7)" "0.1 - 191.8 (25.0)" "0.2 - 149.6 (30.8)"
[4] "8.6 - 60.5 (21.2)"  "0.1 - 73.2 (17.6)" 
D3V2, continuous
          vv
clus       ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA
  subtype1                                      44
  subtype2                                     277
  subtype3                                      17
  subtype4                                       8
  subtype5                                      34
          vv
clus       MIXED SEROUS AND ENDOMETRIOID SEROUS ENDOMETRIAL ADENOCARCINOMA
  subtype1                            11                                97
  subtype2                             8                                 5
  subtype3                             0                                 2
  subtype4                             1                                 0
  subtype5                             1                                 0
D3V3, multiclass
                                         clus
vv                                        subtype1 subtype2 subtype3 subtype4
  ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA       44      277       17        8
  MIXED SEROUS AND ENDOMETRIOID                 11        8        0        1
  SEROUS ENDOMETRIAL ADENOCARCINOMA             97        5        2        0
                                         clus
vv                                        subtype5
  ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA       34
  MIXED SEROUS AND ENDOMETRIOID                  1
  SEROUS ENDOMETRIAL ADENOCARCINOMA              0
[1] 3 5
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V4, binary
          cls
clus         0   1
  subtype1  31 121
  subtype2  93 197
  subtype3   2  17
  subtype4   3   6
  subtype5   9  26
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   31  121
  subtype2   93  197
  subtype3    2   17
  subtype4    3    6
  subtype5    9   26
     clus
vv    subtype1 subtype2 subtype3 subtype4 subtype5
  NO        31       93        2        3        9
  YES      121      197       17        6       26
[1] 2 5
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus        R0  R1  R2  RX
  subtype1  96   9  10  12
  subtype2 208  13   5  16
  subtype3  12   0   1   1
  subtype4   9   0   0   0
  subtype5  26   0   1   1
D3V5, multiclass
    clus
vv   subtype1 subtype2 subtype3 subtype4 subtype5
  R0       96      208       12        9       26
  R1        9       13        0        0        0
  R2       10        5        1        0        1
  RX       12       16        1        0        1
[1] 4 5
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       AMERICAN INDIAN OR ALASKA NATIVE ASIAN BLACK OR AFRICAN AMERICAN
  subtype1                                1     2                        45
  subtype2                                3    14                        38
  subtype3                                0     3                         1
  subtype4                                0     0                         1
  subtype5                                0     0                         5
          vv
clus       NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER WHITE
  subtype1                                         3    90
  subtype2                                         5   217
  subtype3                                         0    15
  subtype4                                         0     8
  subtype5                                         1    27
D3V6, multiclass
                                           clus
vv                                          subtype1 subtype2 subtype3 subtype4
  AMERICAN INDIAN OR ALASKA NATIVE                 1        3        0        0
  ASIAN                                            2       14        3        0
  BLACK OR AFRICAN AMERICAN                       45       38        1        1
  NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER        3        5        0        0
  WHITE                                           90      217       15        8
                                           clus
vv                                          subtype5
  AMERICAN INDIAN OR ALASKA NATIVE                 0
  ASIAN                                            0
  BLACK OR AFRICAN AMERICAN                        5
  NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER        1
  WHITE                                           27
[1] 5 5
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V7, binary
          cls
clus         0   1
  subtype1   6 102
  subtype2   7 197
  subtype3   0  15
  subtype4   0   9
  subtype5   0  27
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6  102
  subtype2    7  197
  subtype3    0   15
  subtype4    0    9
  subtype5    0   27
                        clus
vv                       subtype1 subtype2 subtype3 subtype4 subtype5
  HISPANIC OR LATINO            6        7        0        0        0
  NOT HISPANIC OR LATINO      102      197       15        9       27
[1] 2 5
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2        0   1
  subtype1 124  24
  subtype2  75   7
  subtype3 151  14
subtype1 subtype2 subtype3 
     148       82      165 
subtype1 subtype2 subtype3 
      24        7       14 
$subtype1
TCGA-A5-A0G1 TCGA-A5-A0GR TCGA-A5-A1OF TCGA-A5-A1OG TCGA-A5-A1OH TCGA-A5-A2K2 
      106.88        36.82         7.92        11.44        36.33        91.04 
TCGA-A5-A2K3 TCGA-A5-A2K4 TCGA-A5-A3LP TCGA-AJ-A23M TCGA-AJ-A2QM TCGA-AJ-A3BF 
       46.32        28.64        14.96         1.18         0.85         1.12 
TCGA-AJ-A3EJ TCGA-AJ-A3EL TCGA-AJ-A3EM TCGA-AJ-A3IA TCGA-AJ-A3NE TCGA-AJ-A3NF 
        1.64        22.49        22.26         0.92        20.65         1.35 
TCGA-AJ-A3NH TCGA-AJ-A3OJ TCGA-AJ-A3QS TCGA-AJ-A3TW TCGA-AP-A059 TCGA-AP-A0LF 
        0.76         1.94        16.87         1.71         8.22         3.39 
TCGA-AP-A0LM TCGA-AP-A1DK TCGA-AP-A1E4 TCGA-AP-A3K1 TCGA-AP-A5FX TCGA-AX-A06D 
       27.12        60.36        16.24        18.25        33.73        12.26 
TCGA-AX-A0IZ TCGA-AX-A1C5 TCGA-AX-A1C7 TCGA-AX-A1C8 TCGA-AX-A1CA TCGA-AX-A1CC 
       43.82        19.20        16.96        13.55        20.28        12.43 
TCGA-AX-A1CF TCGA-AX-A1CN TCGA-AX-A1CR TCGA-AX-A2H2 TCGA-AX-A2H4 TCGA-AX-A2H5 
       76.83        25.12        11.08         4.77        30.12        71.24 
TCGA-AX-A2H8 TCGA-AX-A2HF TCGA-AX-A2HG TCGA-AX-A2HH TCGA-AX-A2HK TCGA-AX-A2IN 
       61.18        19.36        26.33        17.75         2.96        31.13 
TCGA-AX-A3FT TCGA-AX-A3FZ TCGA-AX-A3G3 TCGA-AX-A3G7 TCGA-AX-A3G8 TCGA-AX-A3GI 
        0.10         0.20         0.03         0.23         1.18         0.13 
TCGA-B5-A0K8 TCGA-B5-A0KB TCGA-B5-A11I TCGA-B5-A11X TCGA-B5-A1MR TCGA-B5-A1MU 
       17.85         4.11        75.72        19.59       191.84        50.89 
TCGA-B5-A1MY TCGA-B5-A1N2 TCGA-B5-A3FA TCGA-B5-A3FB TCGA-B5-A3S1 TCGA-B5-A5OC 
       11.87        12.79        96.30        78.81         5.03        41.06 
TCGA-B5-A5OD TCGA-B5-A5OE TCGA-BG-A0YV TCGA-BG-A18C TCGA-BG-A220 TCGA-BG-A221 
       34.13        34.95        12.56        15.45        14.27         1.81 
TCGA-BG-A2AE TCGA-BK-A0CC TCGA-BK-A139 TCGA-BK-A26L TCGA-BS-A0U9 TCGA-BS-A0V8 
       23.70        10.22        10.16        24.13        67.20        49.55 
TCGA-D1-A0ZP TCGA-D1-A0ZS TCGA-D1-A0ZZ TCGA-D1-A15V TCGA-D1-A15X TCGA-D1-A168 
       29.95         4.87        22.55        39.48        29.88        36.10 
TCGA-D1-A16G TCGA-D1-A16I TCGA-D1-A16J TCGA-D1-A16S TCGA-D1-A179 TCGA-D1-A17K 
       27.42        11.51        29.92        18.67         6.77        28.08 
TCGA-D1-A1NU TCGA-D1-A1NW TCGA-D1-A1NX TCGA-D1-A1O8 TCGA-D1-A2G0 TCGA-D1-A3DG 
       13.22         0.72        18.25         3.95         3.52         4.27 
TCGA-D1-A3DH TCGA-DI-A1BU TCGA-DI-A1NN TCGA-DI-A1NO TCGA-DI-A2QT TCGA-E6-A1LZ 
        4.11        39.29        35.38         9.37        12.39        48.36 
TCGA-E6-A2P8 TCGA-E6-A8L9 TCGA-EC-A1QX TCGA-EO-A1Y5 TCGA-EO-A1Y8 TCGA-EO-A22T 
        2.37        24.33         7.36        10.92        37.71        33.01 
TCGA-EO-A22X TCGA-EO-A3AV TCGA-EO-A3AZ TCGA-EO-A3B1 TCGA-EO-A3KU TCGA-EO-A3KW 
       57.60        35.15        27.16        26.96        22.26        16.34 
TCGA-EY-A1G7 TCGA-EY-A1GC TCGA-EY-A1GJ TCGA-EY-A1GM TCGA-EY-A1GO TCGA-EY-A1GP 
        6.21         4.54        23.90         6.90        19.27        18.84 
TCGA-EY-A1GS TCGA-EY-A1GV TCGA-EY-A212 TCGA-EY-A214 TCGA-EY-A2ON TCGA-EY-A2OO 
       15.09        15.81         3.62        14.40        13.45        45.76 
TCGA-EY-A2OQ TCGA-EY-A3L3 TCGA-EY-A3QX TCGA-EY-A4KR TCGA-EY-A54A TCGA-FI-A2CX 
       29.10        27.35        13.84         6.44         3.72        40.01 
TCGA-FI-A2CY TCGA-FI-A2D2 TCGA-FI-A2D6 TCGA-FI-A2EU TCGA-FI-A2EW TCGA-FI-A2EX 
       34.98        36.00         8.98        96.69        59.01         9.07 
TCGA-FI-A2EY TCGA-FI-A2F8 TCGA-FI-A3PV TCGA-FI-A3PX TCGA-H5-A2HR TCGA-K6-A3WQ 
       28.93        25.02        41.06        45.01         1.74        13.15 
TCGA-KJ-A3U4 TCGA-PG-A6IB TCGA-PG-A914 TCGA-PG-A915 
        2.43         9.11        12.92         7.00 

$subtype2
TCGA-A5-A0GG TCGA-A5-A0GQ TCGA-A5-A1OJ TCGA-A5-A1OK TCGA-A5-A3LO TCGA-AJ-A23N 
       87.32        38.37         9.60         8.02         7.33         1.08 
TCGA-AJ-A2QK TCGA-AJ-A3BD TCGA-AJ-A3OK TCGA-AJ-A5DW TCGA-AJ-A6NU TCGA-AJ-A8CT 
        0.39         0.49        15.95         2.33         0.99         2.70 
TCGA-AP-A1DQ TCGA-AP-A1E3 TCGA-AW-A1PO TCGA-AX-A06L TCGA-AX-A1C9 TCGA-AX-A1CJ 
       41.95        27.85         0.56        60.66        15.25        54.12 
TCGA-AX-A1CP TCGA-AX-A2H7 TCGA-AX-A2IO TCGA-AX-A3G4 TCGA-B5-A11M TCGA-B5-A11O 
       36.39        33.53        38.70         0.13        44.78        40.50 
TCGA-B5-A11P TCGA-B5-A11R TCGA-B5-A11S TCGA-B5-A11U TCGA-B5-A11Y TCGA-B5-A121 
       36.82        33.50        27.35        16.73        18.41        16.57 
TCGA-B5-A1MS TCGA-B5-A3F9 TCGA-B5-A3FD TCGA-BG-A0VV TCGA-BG-A0VX TCGA-BG-A0W1 
      102.31       116.25        33.11        26.66        34.29        52.83 
TCGA-BG-A0W2 TCGA-BG-A0YU TCGA-BG-A186 TCGA-BG-A18A TCGA-BG-A3PP TCGA-BK-A56F 
       56.58        14.83        13.78        14.01         6.81        13.18 
TCGA-BK-A6W4 TCGA-BS-A0T9 TCGA-BS-A0UL TCGA-BS-A0V7 TCGA-D1-A0ZR TCGA-D1-A0ZV 
        9.86        46.95        81.57        63.58         0.56        23.93 
TCGA-D1-A15W TCGA-D1-A162 TCGA-D1-A165 TCGA-D1-A16B TCGA-D1-A16D TCGA-D1-A16E 
       30.08        37.64         0.66        36.36        37.51        36.79 
TCGA-D1-A16O TCGA-D1-A16Q TCGA-D1-A16R TCGA-D1-A16X TCGA-D1-A16Y TCGA-D1-A17B 
       33.63        10.65         0.69         3.65        17.49         7.00 
TCGA-D1-A17C TCGA-D1-A17L TCGA-D1-A17N TCGA-D1-A17S TCGA-D1-A1O5 TCGA-D1-A2G7 
        0.99        26.37         1.51        24.30        15.06        44.88 
TCGA-DI-A0WH TCGA-DI-A1BY TCGA-DI-A1C3 TCGA-DI-A2QU TCGA-DI-A2QY TCGA-EO-A2CG 
       16.31        36.62        24.30        31.10        91.96        32.38 
TCGA-EO-A2CH TCGA-EO-A3AS TCGA-EY-A1GR TCGA-EY-A210 TCGA-FI-A2D0 TCGA-FI-A2F9 
       19.40        34.39        17.62        12.59        33.99        26.01 
TCGA-PG-A5BC TCGA-PG-A7D5 TCGA-QF-A5YS TCGA-QS-A5YQ 
       10.82        23.97        18.84         4.21 

$subtype3
TCGA-5S-A9Q8 TCGA-A5-A0VO TCGA-A5-A2K5 TCGA-A5-A2K7 TCGA-AJ-A23O TCGA-AJ-A2QL 
        1.08        11.97         5.33         5.16         1.97        19.79 
TCGA-AJ-A2QN TCGA-AJ-A2QO TCGA-AJ-A3BG TCGA-AJ-A3BI TCGA-AJ-A3BK TCGA-AJ-A3EK 
        2.40         3.02         0.76         2.24         1.68        14.66 
TCGA-AJ-A3I9 TCGA-AJ-A3NC TCGA-AJ-A3NG TCGA-AJ-A3OL TCGA-AJ-A8CW TCGA-AP-A05O 
        1.28        36.99        15.62         1.87         0.13        12.20 
TCGA-AP-A0LS TCGA-AP-A1DH TCGA-AP-A1DM TCGA-AP-A1DO TCGA-AP-A1DP TCGA-AP-A1DR 
       63.06        71.67        55.89        31.30        35.54        49.15 
TCGA-AP-A1DV TCGA-AP-A1E0 TCGA-AP-A1E1 TCGA-AX-A06H TCGA-AX-A0IS TCGA-AX-A0J0 
        6.71        30.90        10.42        27.39        35.01        40.11 
TCGA-AX-A1C4 TCGA-AX-A1CE TCGA-AX-A1CI TCGA-AX-A1CK TCGA-AX-A2HA TCGA-AX-A2HC 
       13.28        20.05        72.56        67.50        68.71        33.40 
TCGA-AX-A2HD TCGA-AX-A2HJ TCGA-AX-A3FS TCGA-AX-A3FW TCGA-AX-A3FX TCGA-AX-A3G1 
       40.50        27.32         0.23         0.33         0.13        20.52 
TCGA-AX-A3G9 TCGA-AX-A3GB TCGA-B5-A0JT TCGA-B5-A0JU TCGA-B5-A0JX TCGA-B5-A11E 
        8.35        14.47        43.13        48.76        44.71         8.71 
TCGA-B5-A11F TCGA-B5-A11G TCGA-B5-A11H TCGA-B5-A11J TCGA-B5-A11L TCGA-B5-A11N 
      185.79       113.36        88.34        54.44        45.90        43.96 
TCGA-B5-A11Q TCGA-B5-A11V TCGA-B5-A11W TCGA-B5-A11Z TCGA-B5-A1MV TCGA-B5-A1MW 
       32.09        19.56        19.50        17.36        14.40        14.70 
TCGA-B5-A1MX TCGA-B5-A1MZ TCGA-B5-A3FC TCGA-BG-A0MA TCGA-BG-A0MH TCGA-BG-A0MK 
       11.70        15.29        62.14        10.72        63.45        43.30 
TCGA-BG-A0VT TCGA-BG-A0VW TCGA-BG-A0VZ TCGA-BG-A187 TCGA-BG-A18B TCGA-BG-A222 
       24.39        16.34        52.64        14.73        15.45         9.57 
TCGA-BG-A2AD TCGA-BG-A2L7 TCGA-BG-A3EW TCGA-BK-A0CA TCGA-BK-A13B TCGA-BK-A13C 
       35.67        20.12        11.31        34.98        31.76        24.99 
TCGA-BK-A4ZD TCGA-BK-A6W3 TCGA-BS-A0U5 TCGA-BS-A0UA TCGA-BS-A0V4 TCGA-BS-A0V6 
       16.64        10.03        96.49        88.34        59.51        62.79 
TCGA-BS-A0VI TCGA-BS-A0WQ TCGA-D1-A0ZN TCGA-D1-A0ZO TCGA-D1-A0ZQ TCGA-D1-A0ZU 
       63.16        66.48        16.83        19.79         8.55        28.67 
TCGA-D1-A101 TCGA-D1-A102 TCGA-D1-A103 TCGA-D1-A15Z TCGA-D1-A160 TCGA-D1-A161 
        1.74         4.44        21.99         1.91         3.68        29.33 
TCGA-D1-A163 TCGA-D1-A167 TCGA-D1-A169 TCGA-D1-A16F TCGA-D1-A16N TCGA-D1-A16V 
       32.58        15.72        37.32         2.63        31.07         1.41 
TCGA-D1-A174 TCGA-D1-A175 TCGA-D1-A176 TCGA-D1-A177 TCGA-D1-A17A TCGA-D1-A17D 
       19.53         6.64        30.15        18.02         1.58        30.44 
TCGA-D1-A17F TCGA-D1-A17H TCGA-D1-A17M TCGA-D1-A17Q TCGA-D1-A17R TCGA-D1-A17T 
        1.28        28.01        10.22         1.78        11.15         2.33 
TCGA-D1-A17U TCGA-D1-A1NS TCGA-D1-A1NY TCGA-D1-A1NZ TCGA-D1-A1O0 TCGA-D1-A1O7 
       22.92         1.41        16.87        18.02         2.07         1.05 
TCGA-D1-A2G5 TCGA-D1-A2G6 TCGA-D1-A3DA TCGA-DF-A2KZ TCGA-E6-A1LX TCGA-E6-A1M0 
       41.42         8.48         0.26        27.16        23.38        17.06 
TCGA-E6-A2P9 TCGA-EC-A1NJ TCGA-EC-A24G TCGA-EO-A1Y7 TCGA-EO-A22R TCGA-EO-A22S 
        6.67        16.01        16.80        18.81        31.96        35.05 
TCGA-EO-A22U TCGA-EO-A22Y TCGA-EO-A3AU TCGA-EO-A3AY TCGA-EY-A1G8 TCGA-EY-A1GD 
       27.12        24.79        19.36        12.89        14.99         8.15 
TCGA-EY-A1GE TCGA-EY-A1GF TCGA-EY-A1GH TCGA-EY-A1GI TCGA-EY-A1GK TCGA-EY-A1GL 
       24.36        27.16        23.34        23.34        22.78        13.97 
TCGA-EY-A1GQ TCGA-EY-A1GT TCGA-EY-A1GU TCGA-EY-A1GW TCGA-EY-A1GX TCGA-EY-A1H0 
       17.88        16.11        12.43         8.55         6.48        19.33 
TCGA-EY-A215 TCGA-EY-A2OM TCGA-EY-A2OP TCGA-EY-A547 TCGA-EY-A548 TCGA-EY-A549 
       18.87        22.82        31.04        17.92         2.14         6.97 
TCGA-EY-A5W2 TCGA-EY-A72D TCGA-FI-A2D4 TCGA-FI-A2D5 TCGA-FI-A2F4 TCGA-PG-A916 
        5.29         5.88         7.99        13.84        28.96        11.24 
TCGA-PG-A917 TCGA-QF-A5YT TCGA-QS-A5YR 
        6.97        39.95         5.52 

subtype1 subtype2 subtype3 
    0.03     0.13     0.13 
subtype1 subtype2 subtype3 
  191.84   116.25   185.79 
subtype1 subtype2 subtype3 
  17.800   24.135   17.920 
[1] "0.0 - 191.8 (17.8)" "0.1 - 116.2 (24.1)" "0.1 - 185.8 (17.9)"
D4V2, continuous
          vv
clus       ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA
  subtype1                                      61
  subtype2                                      65
  subtype3                                     162
          vv
clus       MIXED SEROUS AND ENDOMETRIOID SEROUS ENDOMETRIAL ADENOCARCINOMA
  subtype1                            15                                74
  subtype2                             2                                15
  subtype3                             3                                 0
D4V3, multiclass
                                         clus
vv                                        subtype1 subtype2 subtype3
  ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA       61       65      162
  MIXED SEROUS AND ENDOMETRIOID                 15        2        3
  SEROUS ENDOMETRIAL ADENOCARCINOMA             74       15        0
[1] 3 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V4, binary
          cls
clus         0   1
  subtype1  37 113
  subtype2  12  70
  subtype3  38 127
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   37  113
  subtype2   12   70
  subtype3   38  127
     clus
vv    subtype1 subtype2 subtype3
  NO        37       12       38
  YES      113       70      127
[1] 2 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus        R0  R1  R2  RX
  subtype1  96   9   8  10
  subtype2  51   3   4  11
  subtype3 118   6   1   8
D4V5, multiclass
    clus
vv   subtype1 subtype2 subtype3
  R0       96       51      118
  R1        9        3        6
  R2        8        4        1
  RX       10       11        8
[1] 4 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       AMERICAN INDIAN OR ALASKA NATIVE ASIAN BLACK OR AFRICAN AMERICAN
  subtype1                                1     2                        37
  subtype2                                0     2                        18
  subtype3                                1     3                        27
          vv
clus       NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER WHITE
  subtype1                                         3    97
  subtype2                                         4    55
  subtype3                                         0   125
D4V6, multiclass
                                           clus
vv                                          subtype1 subtype2 subtype3
  AMERICAN INDIAN OR ALASKA NATIVE                 1        0        1
  ASIAN                                            2        2        3
  BLACK OR AFRICAN AMERICAN                       37       18       27
  NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER        3        4        0
  WHITE                                           97       55      125
[1] 5 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V7, binary
          cls
clus         0   1
  subtype1   6 105
  subtype2   1  61
  subtype3   3 121
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6  105
  subtype2    1   61
  subtype3    3  121
                        clus
vv                       subtype1 subtype2 subtype3
  HISPANIC OR LATINO            6        1        3
  NOT HISPANIC OR LATINO      105       61      121
[1] 2 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = RPPA_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 38  4
  subtype2 33  6
  subtype3 39  1
  subtype4  8  4
  subtype5 39  2
  subtype6 23  3
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
      42       39       40       12       41       26 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
       4        6        1        4        2        3 
$subtype1
TCGA-A5-A0G1 TCGA-A5-A0GE TCGA-A5-A0GQ TCGA-A5-A0GR TCGA-A5-A0R8 TCGA-A5-A0RA 
      106.88       105.37        38.37        36.82        19.59        29.06 
TCGA-A5-A0VP TCGA-AP-A059 TCGA-AP-A05J TCGA-AP-A0LF TCGA-AP-A0LI TCGA-AP-A0LM 
       42.35         8.22        36.89         3.39        97.71        27.12 
TCGA-AX-A05Z TCGA-AX-A064 TCGA-AX-A06D TCGA-AX-A06L TCGA-B5-A0K2 TCGA-B5-A0K4 
       46.45        34.98        12.26        60.66        25.91        17.88 
TCGA-B5-A11I TCGA-B5-A11U TCGA-B5-A11Y TCGA-BG-A0M0 TCGA-BG-A0M2 TCGA-BG-A0MG 
       75.72        16.73        18.41        19.33        20.94        48.56 
TCGA-BK-A0CA TCGA-BK-A0CC TCGA-BK-A139 TCGA-BS-A0T9 TCGA-BS-A0U9 TCGA-D1-A0ZR 
       34.98        10.22        10.16        46.95        67.20         0.56 
TCGA-D1-A101 TCGA-D1-A15X TCGA-D1-A163 TCGA-D1-A16D TCGA-D1-A16E TCGA-D1-A16F 
        1.74        29.88        32.58        37.51        36.79         2.63 
TCGA-D1-A16G TCGA-D1-A16J TCGA-D1-A16X TCGA-D1-A17B TCGA-D1-A17D TCGA-D1-A17N 
       27.42        29.92         3.65         7.00        30.44         1.51 

$subtype2
TCGA-A5-A0G2 TCGA-A5-A0G3 TCGA-A5-A0G5 TCGA-A5-A0GH TCGA-A5-A0GV TCGA-A5-A0GW 
      149.56        46.95        37.02        74.10        20.81        23.21 
TCGA-A5-A0R6 TCGA-A5-A0R7 TCGA-AP-A052 TCGA-AP-A053 TCGA-AP-A054 TCGA-AP-A056 
       19.96        17.59        21.99         5.95        23.31        86.07 
TCGA-AP-A05A TCGA-AP-A05D TCGA-AP-A0LD TCGA-AP-A0LE TCGA-AP-A0LT TCGA-AX-A06B 
       39.42        57.80       117.99       110.37        49.22        53.92 
TCGA-AX-A06F TCGA-AX-A0J0 TCGA-B5-A0JN TCGA-B5-A0JY TCGA-B5-A0K3 TCGA-B5-A11E 
       51.09        40.11        80.38        32.55        23.01         8.71 
TCGA-B5-A11H TCGA-B5-A11X TCGA-BG-A0RY TCGA-BG-A0YV TCGA-BG-A18C TCGA-BS-A0TA 
       88.34        19.59        15.42        12.56        15.45        23.47 
TCGA-BS-A0TJ TCGA-D1-A167 TCGA-D1-A168 TCGA-D1-A16N TCGA-D1-A16S TCGA-D1-A177 
       67.99        15.72        36.10        31.07        18.67        18.02 
TCGA-D1-A179 TCGA-D1-A17K TCGA-D1-A17R 
        6.77        28.08        11.15 

$subtype3
TCGA-A5-A0G9 TCGA-A5-A0GB TCGA-A5-A0GJ TCGA-A5-A0GM TCGA-AX-A05W TCGA-AX-A063 
       83.51        32.78        65.75        60.53        68.35        66.58 
TCGA-AX-A06J TCGA-AX-A0J1 TCGA-B5-A0JZ TCGA-B5-A0K1 TCGA-B5-A11F TCGA-B5-A11N 
       30.02        65.88        28.64        30.51       185.79        43.96 
TCGA-B5-A11Q TCGA-B5-A11S TCGA-B5-A11W TCGA-BG-A0LX TCGA-BG-A0M7 TCGA-BG-A0M9 
       32.09        27.35        19.50        20.19        38.37        28.27 
TCGA-BG-A0MC TCGA-BG-A0MH TCGA-BG-A0MS TCGA-BG-A0MT TCGA-BG-A0W1 TCGA-BG-A0YU 
       41.52        63.45        30.81        21.17        52.83        14.83 
TCGA-BG-A186 TCGA-BG-A18A TCGA-BG-A18B TCGA-BK-A0CB TCGA-BK-A13C TCGA-BS-A0U7 
       13.78        14.01        15.45         6.21        24.99        30.74 
TCGA-BS-A0U8 TCGA-D1-A0ZZ TCGA-D1-A15W TCGA-D1-A160 TCGA-D1-A16O TCGA-D1-A175 
       97.41        22.55        30.08         3.68        33.63         6.64 
TCGA-D1-A17H TCGA-D1-A17L TCGA-D1-A17M TCGA-D1-A17Q 
       28.01        26.37        10.22         1.78 

$subtype4
TCGA-A5-A0GA TCGA-A5-A0GD TCGA-A5-A0GG TCGA-AP-A0LP TCGA-AX-A05S TCGA-AX-A05Y 
       17.85         3.22        87.32        61.64        13.58        72.03 
TCGA-AX-A060 TCGA-BG-A0M4 TCGA-BK-A0C9 TCGA-BS-A0TC TCGA-BS-A0UF TCGA-D1-A16V 
       35.34        34.98        35.90        85.55        85.84         1.41 

$subtype5
TCGA-A5-A0GI TCGA-A5-A0GN TCGA-A5-A0GU TCGA-A5-A0R9 TCGA-A5-A0VQ TCGA-AP-A051 
       57.53        60.53        28.27        24.62        15.95        83.67 
TCGA-AP-A05N TCGA-AP-A05O TCGA-AP-A05P TCGA-AP-A0LG TCGA-AP-A0LJ TCGA-AP-A0LL 
        7.86        12.20        20.91        63.16        31.73        83.97 
TCGA-AP-A0LN TCGA-AP-A0LV TCGA-AX-A05T TCGA-AX-A05U TCGA-AX-A062 TCGA-AX-A0IS 
       82.52        25.08        19.82        29.69        45.99        35.01 
TCGA-B5-A0K0 TCGA-B5-A0K7 TCGA-B5-A11G TCGA-B5-A11V TCGA-B5-A11Z TCGA-B5-A121 
       28.34        17.10       113.36        19.56        17.36        16.57 
TCGA-BG-A0M3 TCGA-BG-A0MU TCGA-BG-A0VT TCGA-BG-A0VV TCGA-BS-A0TI TCGA-BS-A0UJ 
       35.21        20.28        24.39        26.66        61.87        82.39 
TCGA-BS-A0V7 TCGA-D1-A15Z TCGA-D1-A165 TCGA-D1-A16B TCGA-D1-A16Q TCGA-D1-A16Y 
       63.58         1.91         0.66        36.36        10.65        17.49 
TCGA-D1-A176 TCGA-D1-A17C TCGA-D1-A17S TCGA-D1-A17T TCGA-DI-A0WH 
       30.15         0.99        24.30         2.33        16.31 

$subtype6
TCGA-A5-A0GX TCGA-A5-A0VO TCGA-AP-A05H TCGA-AP-A0LH TCGA-AX-A0IW TCGA-AX-A0IZ 
       68.65        11.97        45.53        36.36        37.78        43.82 
TCGA-B5-A0JT TCGA-B5-A0K9 TCGA-BG-A0LW TCGA-BG-A0M6 TCGA-BG-A0M8 TCGA-BG-A187 
       43.13        11.01        18.61         7.92        36.49        14.73 
TCGA-BS-A0TD TCGA-BS-A0TG TCGA-D1-A0ZP TCGA-D1-A0ZU TCGA-D1-A102 TCGA-D1-A103 
       78.21        77.95        29.95        28.67         4.44        21.99 
TCGA-D1-A15V TCGA-D1-A161 TCGA-D1-A162 TCGA-D1-A169 TCGA-D1-A16I TCGA-D1-A16R 
       39.48        29.33        37.64        37.32        11.51         0.69 
TCGA-D1-A17F TCGA-D1-A17U 
        1.28        22.92 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
    0.56     5.95     1.78     1.41     0.66     0.69 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
  106.88   149.56   185.79    87.32   113.36    78.21 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
   29.47    28.08    30.05    35.62    25.08    29.64 
[1] "0.6 - 106.9 (29.5)" "6.0 - 149.6 (28.1)" "1.8 - 185.8 (30.0)"
[4] "1.4 - 87.3 (35.6)"  "0.7 - 113.4 (25.1)" "0.7 - 78.2 (29.6)" 
D5V2, continuous
          vv
clus       ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA
  subtype1                                      35
  subtype2                                      28
  subtype3                                      39
  subtype4                                      12
  subtype5                                      41
  subtype6                                      19
          vv
clus       MIXED SEROUS AND ENDOMETRIOID SEROUS ENDOMETRIAL ADENOCARCINOMA
  subtype1                             1                                 6
  subtype2                             0                                11
  subtype3                             1                                 0
  subtype4                             0                                 0
  subtype5                             0                                 0
  subtype6                             1                                 6
D5V3, multiclass
                                         clus
vv                                        subtype1 subtype2 subtype3 subtype4
  ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA       35       28       39       12
  MIXED SEROUS AND ENDOMETRIOID                  1        0        1        0
  SEROUS ENDOMETRIAL ADENOCARCINOMA              6       11        0        0
                                         clus
vv                                        subtype5 subtype6
  ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA       41       19
  MIXED SEROUS AND ENDOMETRIOID                  0        1
  SEROUS ENDOMETRIAL ADENOCARCINOMA              0        6
[1] 3 6
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V4, binary
          cls
clus        0  1
  subtype1 20 22
  subtype2 19 20
  subtype3 13 27
  subtype4  4  8
  subtype5 13 28
  subtype6 11 15
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   20   22
  subtype2   19   20
  subtype3   13   27
  subtype4    4    8
  subtype5   13   28
  subtype6   11   15
     clus
vv    subtype1 subtype2 subtype3 subtype4 subtype5 subtype6
  NO        20       19       13        4       13       11
  YES       22       20       27        8       28       15
[1] 2 6
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       R0 R1 R2 RX
  subtype1 24  3  3  6
  subtype2 29  1  1  2
  subtype3 26  0  0  5
  subtype4 10  1  1  0
  subtype5 32  2  0  1
  subtype6 22  0  0  2
D5V5, multiclass
    clus
vv   subtype1 subtype2 subtype3 subtype4 subtype5 subtype6
  R0       24       29       26       10       32       22
  R1        3        1        0        1        2        0
  R2        3        1        0        1        0        0
  RX        6        2        5        0        1        2
[1] 4 6
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       AMERICAN INDIAN OR ALASKA NATIVE ASIAN BLACK OR AFRICAN AMERICAN
  subtype1                                0     1                         6
  subtype2                                0     3                         6
  subtype3                                0     0                         2
  subtype4                                1     2                         1
  subtype5                                1     2                         3
  subtype6                                0     1                         0
          vv
clus       NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER WHITE
  subtype1                                         2    30
  subtype2                                         1    28
  subtype3                                         0    38
  subtype4                                         0     8
  subtype5                                         1    33
  subtype6                                         0    25
D5V6, multiclass
                                           clus
vv                                          subtype1 subtype2 subtype3 subtype4
  AMERICAN INDIAN OR ALASKA NATIVE                 0        0        0        1
  ASIAN                                            1        3        0        2
  BLACK OR AFRICAN AMERICAN                        6        6        2        1
  NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER        2        1        0        0
  WHITE                                           30       28       38        8
                                           clus
vv                                          subtype5 subtype6
  AMERICAN INDIAN OR ALASKA NATIVE                 1        0
  ASIAN                                            2        1
  BLACK OR AFRICAN AMERICAN                        3        0
  NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER        1        0
  WHITE                                           33       25
[1] 5 6
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V7, binary
          cls
clus        0  1
  subtype1  2 29
  subtype2  2 21
  subtype3  0 30
  subtype4  0 10
  subtype5  1 23
  subtype6  0 22
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   29
  subtype2    2   21
  subtype3    0   30
  subtype4    0   10
  subtype5    1   23
  subtype6    0   22
                        clus
vv                       subtype1 subtype2 subtype3 subtype4 subtype5 subtype6
  HISPANIC OR LATINO            2        2        0        0        1        0
  NOT HISPANIC OR LATINO       29       21       30       10       23       22
[1] 2 6
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = RPPA_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 59 11
  subtype2 63  4
  subtype3 40  4
  subtype4 18  1
subtype1 subtype2 subtype3 subtype4 
      70       67       44       19 
subtype1 subtype2 subtype3 subtype4 
      11        4        4        1 
$subtype1
TCGA-A5-A0G1 TCGA-A5-A0G2 TCGA-A5-A0G3 TCGA-A5-A0G5 TCGA-A5-A0GE TCGA-A5-A0GH 
      106.88       149.56        46.95        37.02       105.37        74.10 
TCGA-A5-A0GQ TCGA-A5-A0R8 TCGA-A5-A0VP TCGA-AP-A052 TCGA-AP-A053 TCGA-AP-A054 
       38.37        19.59        42.35        21.99         5.95        23.31 
TCGA-AP-A056 TCGA-AP-A05A TCGA-AP-A05J TCGA-AP-A0LD TCGA-AP-A0LF TCGA-AP-A0LI 
       86.07        39.42        36.89       117.99         3.39        97.71 
TCGA-AP-A0LT TCGA-AX-A05S TCGA-AX-A05T TCGA-AX-A064 TCGA-AX-A06D TCGA-AX-A06F 
       49.22        13.58        19.82        34.98        12.26        51.09 
TCGA-AX-A06L TCGA-AX-A0J0 TCGA-B5-A0JN TCGA-B5-A0JY TCGA-B5-A0K3 TCGA-B5-A0K7 
       60.66        40.11        80.38        32.55        23.01        17.10 
TCGA-B5-A11H TCGA-B5-A11I TCGA-B5-A11X TCGA-B5-A11Y TCGA-BG-A0M0 TCGA-BG-A0M6 
       88.34        75.72        19.59        18.41        19.33         7.92 
TCGA-BG-A0MG TCGA-BG-A0YV TCGA-BK-A0CA TCGA-BK-A0CC TCGA-BK-A139 TCGA-BS-A0T9 
       48.56        12.56        34.98        10.22        10.16        46.95 
TCGA-BS-A0TA TCGA-BS-A0U9 TCGA-BS-A0V7 TCGA-D1-A0ZR TCGA-D1-A0ZZ TCGA-D1-A101 
       23.47        67.20        63.58         0.56        22.55         1.74 
TCGA-D1-A15W TCGA-D1-A15X TCGA-D1-A163 TCGA-D1-A167 TCGA-D1-A168 TCGA-D1-A16D 
       30.08        29.88        32.58        15.72        36.10        37.51 
TCGA-D1-A16E TCGA-D1-A16F TCGA-D1-A16G TCGA-D1-A16J TCGA-D1-A16Q TCGA-D1-A16S 
       36.79         2.63        27.42        29.92        10.65        18.67 
TCGA-D1-A16X TCGA-D1-A16Y TCGA-D1-A176 TCGA-D1-A177 TCGA-D1-A179 TCGA-D1-A17B 
        3.65        17.49        30.15        18.02         6.77         7.00 
TCGA-D1-A17C TCGA-D1-A17N TCGA-D1-A17S TCGA-D1-A17T 
        0.99         1.51        24.30         2.33 

$subtype2
TCGA-A5-A0G9 TCGA-A5-A0GJ TCGA-A5-A0GM TCGA-A5-A0GR TCGA-A5-A0GU TCGA-A5-A0GV 
       83.51        65.75        60.53        36.82        28.27        20.81 
TCGA-A5-A0GW TCGA-A5-A0R6 TCGA-A5-A0R7 TCGA-A5-A0R9 TCGA-A5-A0RA TCGA-A5-A0VQ 
       23.21        19.96        17.59        24.62        29.06        15.95 
TCGA-AP-A051 TCGA-AP-A059 TCGA-AP-A05D TCGA-AP-A05N TCGA-AP-A05O TCGA-AP-A05P 
       83.67         8.22        57.80         7.86        12.20        20.91 
TCGA-AP-A0LE TCGA-AP-A0LG TCGA-AP-A0LH TCGA-AP-A0LJ TCGA-AP-A0LL TCGA-AP-A0LM 
      110.37        63.16        36.36        31.73        83.97        27.12 
TCGA-AP-A0LN TCGA-AP-A0LV TCGA-AX-A05U TCGA-AX-A05Z TCGA-AX-A062 TCGA-AX-A06B 
       82.52        25.08        29.69        46.45        45.99        53.92 
TCGA-AX-A06J TCGA-B5-A0K0 TCGA-B5-A0K2 TCGA-B5-A0K4 TCGA-B5-A11E TCGA-B5-A11G 
       30.02        28.34        25.91        17.88         8.71       113.36 
TCGA-B5-A11N TCGA-B5-A11Q TCGA-B5-A11S TCGA-B5-A11U TCGA-B5-A11V TCGA-B5-A11W 
       43.96        32.09        27.35        16.73        19.56        19.50 
TCGA-B5-A11Z TCGA-B5-A121 TCGA-BG-A0LW TCGA-BG-A0LX TCGA-BG-A0M2 TCGA-BG-A0M8 
       17.36        16.57        18.61        20.19        20.94        36.49 
TCGA-BG-A0MT TCGA-BG-A0RY TCGA-BG-A0VT TCGA-BG-A0W1 TCGA-BG-A0YU TCGA-BG-A187 
       21.17        15.42        24.39        52.83        14.83        14.73 
TCGA-BG-A18A TCGA-BG-A18C TCGA-BK-A0CB TCGA-BK-A13C TCGA-BS-A0UJ TCGA-D1-A15Z 
       14.01        15.45         6.21        24.99        82.39         1.91 
TCGA-D1-A165 TCGA-D1-A16B TCGA-D1-A17D TCGA-D1-A17K TCGA-D1-A17L TCGA-D1-A17R 
        0.66        36.36        30.44        28.08        26.37        11.15 
TCGA-DI-A0WH 
       16.31 

$subtype3
TCGA-A5-A0GA TCGA-A5-A0GB TCGA-A5-A0GD TCGA-A5-A0GG TCGA-A5-A0GI TCGA-A5-A0GN 
       17.85        32.78         3.22        87.32        57.53        60.53 
TCGA-AP-A0LP TCGA-AX-A05W TCGA-AX-A05Y TCGA-AX-A060 TCGA-AX-A063 TCGA-AX-A0IS 
       61.64        68.35        72.03        35.34        66.58        35.01 
TCGA-AX-A0J1 TCGA-B5-A0JZ TCGA-B5-A0K1 TCGA-B5-A11F TCGA-BG-A0M3 TCGA-BG-A0M4 
       65.88        28.64        30.51       185.79        35.21        34.98 
TCGA-BG-A0M7 TCGA-BG-A0M9 TCGA-BG-A0MC TCGA-BG-A0MH TCGA-BG-A0MS TCGA-BG-A0MU 
       38.37        28.27        41.52        63.45        30.81        20.28 
TCGA-BG-A186 TCGA-BG-A18B TCGA-BK-A0C9 TCGA-BS-A0TC TCGA-BS-A0TI TCGA-BS-A0TJ 
       13.78        15.45        35.90        85.55        61.87        67.99 
TCGA-BS-A0U7 TCGA-BS-A0U8 TCGA-BS-A0UF TCGA-D1-A102 TCGA-D1-A160 TCGA-D1-A169 
       30.74        97.41        85.84         4.44         3.68        37.32 
TCGA-D1-A16N TCGA-D1-A16O TCGA-D1-A16V TCGA-D1-A175 TCGA-D1-A17H TCGA-D1-A17M 
       31.07        33.63         1.41         6.64        28.01        10.22 
TCGA-D1-A17Q TCGA-D1-A17U 
        1.78        22.92 

$subtype4
TCGA-A5-A0GX TCGA-A5-A0VO TCGA-AP-A05H TCGA-AX-A0IW TCGA-AX-A0IZ TCGA-B5-A0JT 
       68.65        11.97        45.53        37.78        43.82        43.13 
TCGA-B5-A0K9 TCGA-BG-A0VV TCGA-BS-A0TD TCGA-BS-A0TG TCGA-D1-A0ZP TCGA-D1-A0ZU 
       11.01        26.66        78.21        77.95        29.95        28.67 
TCGA-D1-A103 TCGA-D1-A15V TCGA-D1-A161 TCGA-D1-A162 TCGA-D1-A16I TCGA-D1-A16R 
       21.99        39.48        29.33        37.64        11.51         0.69 
TCGA-D1-A17F 
        1.28 

subtype1 subtype2 subtype3 subtype4 
    0.56     0.66     1.41     0.69 
subtype1 subtype2 subtype3 subtype4 
  149.56   113.36   185.79    78.21 
subtype1 subtype2 subtype3 subtype4 
  28.650   25.080   34.995   29.950 
[1] "0.6 - 149.6 (28.6)" "0.7 - 113.4 (25.1)" "1.4 - 185.8 (35.0)"
[4] "0.7 - 78.2 (29.9)" 
D6V2, continuous
          vv
clus       ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA
  subtype1                                      52
  subtype2                                      64
  subtype3                                      44
  subtype4                                      14
          vv
clus       MIXED SEROUS AND ENDOMETRIOID SEROUS ENDOMETRIAL ADENOCARCINOMA
  subtype1                             2                                16
  subtype2                             1                                 2
  subtype3                             0                                 0
  subtype4                             0                                 5
D6V3, multiclass
                                         clus
vv                                        subtype1 subtype2 subtype3 subtype4
  ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA       52       64       44       14
  MIXED SEROUS AND ENDOMETRIOID                  2        1        0        0
  SEROUS ENDOMETRIAL ADENOCARCINOMA             16        2        0        5
[1] 3 4
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V4, binary
          cls
clus        0  1
  subtype1 29 41
  subtype2 26 41
  subtype3 17 27
  subtype4  8 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   29   41
  subtype2   26   41
  subtype3   17   27
  subtype4    8   11
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        29       26       17        8
  YES       41       41       27       11
[1] 2 4
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       R0 R1 R2 RX
  subtype1 43  4  5  9
  subtype2 50  1  0  3
  subtype3 34  2  0  3
  subtype4 16  0  0  1
D6V5, multiclass
    clus
vv   subtype1 subtype2 subtype3 subtype4
  R0       43       50       34       16
  R1        4        1        2        0
  R2        5        0        0        0
  RX        9        3        3        1
[1] 4 4
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       AMERICAN INDIAN OR ALASKA NATIVE ASIAN BLACK OR AFRICAN AMERICAN
  subtype1                                0     2                         9
  subtype2                                1     3                         7
  subtype3                                1     3                         2
  subtype4                                0     1                         0
          vv
clus       NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER WHITE
  subtype1                                         4    54
  subtype2                                         0    52
  subtype3                                         0    38
  subtype4                                         0    18
D6V6, multiclass
                                           clus
vv                                          subtype1 subtype2 subtype3 subtype4
  AMERICAN INDIAN OR ALASKA NATIVE                 0        1        1        0
  ASIAN                                            2        3        3        1
  BLACK OR AFRICAN AMERICAN                        9        7        2        0
  NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER        4        0        0        0
  WHITE                                           54       52       38       18
[1] 5 4
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V7, binary
          cls
clus        0  1
  subtype1  3 46
  subtype2  2 37
  subtype3  0 37
  subtype4  0 15
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   46
  subtype2    2   37
  subtype3    0   37
  subtype4    0   15
                        clus
vv                       subtype1 subtype2 subtype3 subtype4
  HISPANIC OR LATINO            3        2        0        0
  NOT HISPANIC OR LATINO       46       37       37       15
[1] 2 4
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = MRNASEQ_CNMF
D7V1, survival
          sevent
clus2        0   1
  subtype1 135  12
  subtype2 172  40
  subtype3 138   8
subtype1 subtype2 subtype3 
     147      212      146 
subtype1 subtype2 subtype3 
      12       40        8 
$subtype1
TCGA-A5-A0GA TCGA-A5-A0GB TCGA-A5-A0GI TCGA-A5-A0GM TCGA-A5-A0GN TCGA-A5-A0GU 
       17.85        32.78        57.53        60.53        60.53        28.27 
TCGA-A5-A0GV TCGA-A5-A0GW TCGA-A5-A0GX TCGA-A5-A0R7 TCGA-A5-A0VP TCGA-A5-A0VQ 
       20.81        23.21        68.65        17.59        42.35        15.95 
TCGA-A5-A2K5 TCGA-A5-A3LO TCGA-AJ-A23O TCGA-AJ-A3BG TCGA-AJ-A3EK TCGA-AJ-A3NC 
        5.33         7.33         1.97         0.76        14.66        36.99 
TCGA-AJ-A3NE TCGA-AJ-A5DW TCGA-AJ-A8CW TCGA-AP-A051 TCGA-AP-A05N TCGA-AP-A0LE 
       20.65         2.33         0.13        83.67         7.86       110.37 
TCGA-AP-A0LG TCGA-AP-A0LL TCGA-AP-A0LS TCGA-AP-A0LT TCGA-AP-A1DH TCGA-AP-A1DM 
       63.16        83.97        63.06        49.22        71.67        55.89 
TCGA-AP-A1DO TCGA-AP-A1DR TCGA-AP-A1DV TCGA-AP-A1E0 TCGA-AP-A1E1 TCGA-AP-A1E3 
       31.30        49.15         6.71        30.90        10.42        27.85 
TCGA-AX-A05S TCGA-AX-A05Z TCGA-AX-A060 TCGA-AX-A062 TCGA-AX-A063 TCGA-AX-A064 
       13.58        46.45        35.34        45.99        66.58        34.98 
TCGA-AX-A06H TCGA-AX-A0IS TCGA-AX-A0IZ TCGA-AX-A0J1 TCGA-AX-A1C4 TCGA-AX-A1CI 
       27.39        35.01        43.82        65.88        13.28        72.56 
TCGA-AX-A1CK TCGA-AX-A1CN TCGA-AX-A2HA TCGA-AX-A2HC TCGA-AX-A3G9 TCGA-B5-A0JU 
       67.50        25.12        68.71        33.40         8.35        48.76 
TCGA-B5-A0JV TCGA-B5-A0JY TCGA-B5-A0JZ TCGA-B5-A0K0 TCGA-B5-A0K6 TCGA-B5-A0K7 
       40.67        32.55        28.64        28.34        13.74        17.10 
TCGA-B5-A0K9 TCGA-B5-A11F TCGA-B5-A11L TCGA-B5-A11N TCGA-B5-A11Q TCGA-B5-A11V 
       11.01       185.79        45.90        43.96        32.09        19.56 
TCGA-B5-A11X TCGA-B5-A11Z TCGA-B5-A1MX TCGA-B5-A1MZ TCGA-B5-A3FC TCGA-B5-A5OC 
       19.59        17.36        11.70        15.29        62.14        41.06 
TCGA-BG-A0LW TCGA-BG-A0LX TCGA-BG-A0M3 TCGA-BG-A0M8 TCGA-BG-A0MI TCGA-BG-A0MO 
       18.61        20.19        35.21        36.49        23.47        43.04 
TCGA-BG-A0MQ TCGA-BG-A0MS TCGA-BG-A0MU TCGA-BG-A0RY TCGA-BG-A0VT TCGA-BG-A0VX 
       39.32        30.81        20.28        15.42        24.39        34.29 
TCGA-BG-A186 TCGA-BG-A3EW TCGA-BK-A0CB TCGA-BK-A13B TCGA-BK-A6W3 TCGA-BS-A0T9 
       13.78        11.31         6.21        31.76        10.03        46.95 
TCGA-BS-A0TG TCGA-BS-A0TI TCGA-BS-A0TJ TCGA-BS-A0U7 TCGA-BS-A0U8 TCGA-BS-A0UF 
       77.95        61.87        67.99        30.74        97.41        85.84 
TCGA-BS-A0UJ TCGA-BS-A0UL TCGA-BS-A0UT TCGA-BS-A0V4 TCGA-BS-A0VI TCGA-BS-A0WQ 
       82.39        81.57        72.72        59.51        63.16        66.48 
TCGA-D1-A0ZN TCGA-D1-A0ZQ TCGA-D1-A0ZU TCGA-D1-A101 TCGA-D1-A102 TCGA-D1-A103 
       16.83         8.55        28.67         1.74         4.44        21.99 
TCGA-D1-A15Z TCGA-D1-A160 TCGA-D1-A163 TCGA-D1-A168 TCGA-D1-A16B TCGA-D1-A16Q 
        1.91         3.68        32.58        36.10        36.36        10.65 
TCGA-D1-A16R TCGA-D1-A16V TCGA-D1-A174 TCGA-D1-A175 TCGA-D1-A177 TCGA-D1-A17C 
        0.69         1.41        19.53         6.64        18.02         0.99 
TCGA-D1-A17H TCGA-D1-A17L TCGA-D1-A17M TCGA-D1-A17R TCGA-D1-A1NY TCGA-DF-A2KZ 
       28.01        26.37        10.22        11.15        16.87        27.16 
TCGA-DI-A1BY TCGA-DI-A1C3 TCGA-E6-A1LX TCGA-E6-A1M0 TCGA-EC-A1QX TCGA-EO-A22R 
       36.62        24.30        23.38        17.06         7.36        31.96 
TCGA-EO-A22S TCGA-EO-A22U TCGA-EO-A3AU TCGA-EY-A1G8 TCGA-EY-A1GD TCGA-EY-A1GI 
       35.05        27.12        19.36        14.99         8.15        23.34 
TCGA-EY-A1GL TCGA-EY-A1GQ TCGA-EY-A1GU TCGA-EY-A214 TCGA-EY-A215 TCGA-EY-A5W2 
       13.97        17.88        12.43        14.40        18.87         5.29 
TCGA-FI-A2D4 TCGA-PG-A917 TCGA-QF-A5YT 
        7.99         6.97        39.95 

$subtype2
TCGA-A5-A0G1 TCGA-A5-A0G2 TCGA-A5-A0G3 TCGA-A5-A0G5 TCGA-A5-A0GH TCGA-A5-A0GR 
      106.88       149.56        46.95        37.02        74.10        36.82 
TCGA-A5-A0R6 TCGA-A5-A1OG TCGA-A5-A1OH TCGA-A5-A2K2 TCGA-A5-A2K3 TCGA-A5-A2K4 
       19.96        11.44        36.33        91.04        46.32        28.64 
TCGA-A5-A2K7 TCGA-A5-A3LP TCGA-AJ-A23M TCGA-AJ-A23N TCGA-AJ-A2QM TCGA-AJ-A3BD 
        5.16        14.96         1.18         1.08         0.85         0.49 
TCGA-AJ-A3BF TCGA-AJ-A3EJ TCGA-AJ-A3EL TCGA-AJ-A3EM TCGA-AJ-A3IA TCGA-AJ-A3NF 
        1.12         1.64        22.49        22.26         0.92         1.35 
TCGA-AJ-A3NG TCGA-AJ-A3NH TCGA-AJ-A3OJ TCGA-AJ-A3OL TCGA-AJ-A3QS TCGA-AJ-A3TW 
       15.62         0.76         1.94         1.87        16.87         1.71 
TCGA-AJ-A6NU TCGA-AP-A052 TCGA-AP-A053 TCGA-AP-A054 TCGA-AP-A056 TCGA-AP-A059 
        0.99        21.99         5.95        23.31        86.07         8.22 
TCGA-AP-A05A TCGA-AP-A05D TCGA-AP-A05H TCGA-AP-A05J TCGA-AP-A0L8 TCGA-AP-A0L9 
       39.42        57.80        45.53        36.89        48.79       125.42 
TCGA-AP-A0LD TCGA-AP-A0LF TCGA-AP-A0LH TCGA-AP-A0LI TCGA-AP-A0LM TCGA-AP-A1DK 
      117.99         3.39        36.36        97.71        27.12        60.36 
TCGA-AP-A1DQ TCGA-AP-A1E4 TCGA-AP-A3K1 TCGA-AW-A1PO TCGA-AX-A06B TCGA-AX-A06D 
       41.95        16.24        18.25         0.56        53.92        12.26 
TCGA-AX-A06F TCGA-AX-A0IU TCGA-AX-A0IW TCGA-AX-A0J0 TCGA-AX-A1C7 TCGA-AX-A1C8 
       51.09        28.54        37.78        40.11        16.96        13.55 
TCGA-AX-A1CA TCGA-AX-A1CC TCGA-AX-A1CF TCGA-AX-A1CP TCGA-AX-A1CR TCGA-AX-A2H2 
       20.28        12.43        76.83        36.39        11.08         4.77 
TCGA-AX-A2H4 TCGA-AX-A2H5 TCGA-AX-A2H8 TCGA-AX-A2HD TCGA-AX-A2HF TCGA-AX-A2HG 
       30.12        71.24        61.18        40.50        19.36        26.33 
TCGA-AX-A2HH TCGA-AX-A2HK TCGA-AX-A2IN TCGA-AX-A2IO TCGA-AX-A3FS TCGA-AX-A3FT 
       17.75         2.96        31.13        38.70         0.23         0.10 
TCGA-AX-A3FZ TCGA-AX-A3G3 TCGA-AX-A3G4 TCGA-AX-A3G7 TCGA-AX-A3G8 TCGA-AX-A3GI 
        0.20         0.03         0.13         0.23         1.18         0.13 
TCGA-B5-A0JN TCGA-B5-A0K3 TCGA-B5-A0K4 TCGA-B5-A0K8 TCGA-B5-A11E TCGA-B5-A11I 
       80.38        23.01        17.88        17.85         8.71        75.72 
TCGA-B5-A11U TCGA-B5-A1MR TCGA-B5-A1MS TCGA-B5-A1MU TCGA-B5-A1MW TCGA-B5-A1MY 
       16.73       191.84       102.31        50.89        14.70        11.87 
TCGA-B5-A1N2 TCGA-B5-A3FA TCGA-B5-A3S1 TCGA-B5-A5OD TCGA-B5-A5OE TCGA-BG-A0M6 
       12.79        96.30         5.03        34.13        34.95         7.92 
TCGA-BG-A0MT TCGA-BG-A0YV TCGA-BG-A18C TCGA-BG-A220 TCGA-BG-A221 TCGA-BG-A222 
       21.17        12.56        15.45        14.27         1.81         9.57 
TCGA-BG-A2AD TCGA-BG-A2AE TCGA-BG-A2L7 TCGA-BG-A3PP TCGA-BK-A0CC TCGA-BK-A139 
       35.67        23.70        20.12         6.81        10.22        10.16 
TCGA-BK-A26L TCGA-BK-A4ZD TCGA-BS-A0TE TCGA-BS-A0U9 TCGA-BS-A0UV TCGA-BS-A0V7 
       24.13        16.64         4.80        67.20        73.25        63.58 
TCGA-BS-A0V8 TCGA-D1-A0ZP TCGA-D1-A0ZS TCGA-D1-A0ZZ TCGA-D1-A15V TCGA-D1-A15X 
       49.55        29.95         4.87        22.55        39.48        29.88 
TCGA-D1-A167 TCGA-D1-A16G TCGA-D1-A16I TCGA-D1-A16J TCGA-D1-A16N TCGA-D1-A16S 
       15.72        27.42        11.51        29.92        31.07        18.67 
TCGA-D1-A16Y TCGA-D1-A179 TCGA-D1-A17K TCGA-D1-A1NU TCGA-D1-A1NW TCGA-D1-A1NX 
       17.49         6.77        28.08        13.22         0.72        18.25 
TCGA-D1-A1O0 TCGA-D1-A1O8 TCGA-D1-A2G0 TCGA-D1-A2G6 TCGA-D1-A2G7 TCGA-D1-A3DA 
        2.07         3.95         3.52         8.48        44.88         0.26 
TCGA-D1-A3DG TCGA-D1-A3DH TCGA-DI-A0WH TCGA-DI-A1NN TCGA-DI-A1NO TCGA-DI-A2QT 
        4.27         4.11        16.31        35.38         9.37        12.39 
TCGA-DI-A2QU TCGA-DI-A2QY TCGA-E6-A1LZ TCGA-E6-A2P8 TCGA-E6-A8L9 TCGA-EO-A1Y5 
       31.10        91.96        48.36         2.37        24.33        10.92 
TCGA-EO-A1Y8 TCGA-EO-A22T TCGA-EO-A22X TCGA-EO-A2CG TCGA-EO-A2CH TCGA-EO-A3AS 
       37.71        33.01        57.60        32.38        19.40        34.39 
TCGA-EO-A3AV TCGA-EO-A3AY TCGA-EO-A3AZ TCGA-EO-A3B1 TCGA-EO-A3KU TCGA-EO-A3KW 
       35.15        12.89        27.16        26.96        22.26        16.34 
TCGA-EY-A1G7 TCGA-EY-A1GC TCGA-EY-A1GM TCGA-EY-A1GO TCGA-EY-A1GP TCGA-EY-A1GR 
        6.21         4.54         6.90        19.27        18.84        17.62 
TCGA-EY-A1GS TCGA-EY-A1GT TCGA-EY-A1GV TCGA-EY-A210 TCGA-EY-A212 TCGA-EY-A2OM 
       15.09        16.11        15.81        12.59         3.62        22.82 
TCGA-EY-A2ON TCGA-EY-A2OO TCGA-EY-A2OP TCGA-EY-A2OQ TCGA-EY-A3L3 TCGA-EY-A3QX 
       13.45        45.76        31.04        29.10        27.35        13.84 
TCGA-EY-A4KR TCGA-EY-A547 TCGA-EY-A54A TCGA-EY-A72D TCGA-FI-A2CX TCGA-FI-A2CY 
        6.44        17.92         3.72         5.88        40.01        34.98 
TCGA-FI-A2D0 TCGA-FI-A2D2 TCGA-FI-A2D5 TCGA-FI-A2D6 TCGA-FI-A2EU TCGA-FI-A2EW 
       33.99        36.00        13.84         8.98        96.69        59.01 
TCGA-FI-A2EX TCGA-FI-A2EY TCGA-FI-A2F8 TCGA-FI-A2F9 TCGA-FI-A3PV TCGA-FI-A3PX 
        9.07        28.93        25.02        26.01        41.06        45.01 
TCGA-H5-A2HR TCGA-K6-A3WQ TCGA-KJ-A3U4 TCGA-PG-A5BC TCGA-PG-A6IB TCGA-PG-A7D5 
        1.74        13.15         2.43        10.82         9.11        23.97 
TCGA-PG-A914 TCGA-PG-A915 
       12.92         7.00 

$subtype3
TCGA-A5-A0G9 TCGA-A5-A0GD TCGA-A5-A0GE TCGA-A5-A0GG TCGA-A5-A0GJ TCGA-A5-A0GP 
       83.51         3.22       105.37        87.32        65.75        46.55 
TCGA-A5-A0GQ TCGA-A5-A0R8 TCGA-A5-A0R9 TCGA-A5-A0RA TCGA-A5-A0VO TCGA-A5-A1OF 
       38.37        19.59        24.62        29.06        11.97         7.92 
TCGA-A5-A1OJ TCGA-A5-A1OK TCGA-AJ-A2QK TCGA-AJ-A2QL TCGA-AJ-A2QN TCGA-AJ-A2QO 
        9.60         8.02         0.39        19.79         2.40         3.02 
TCGA-AJ-A3BI TCGA-AJ-A3BK TCGA-AJ-A3I9 TCGA-AJ-A3OK TCGA-AJ-A8CT TCGA-AP-A05O 
        2.24         1.68         1.28        15.95         2.70        12.20 
TCGA-AP-A05P TCGA-AP-A0LJ TCGA-AP-A0LN TCGA-AP-A0LO TCGA-AP-A0LP TCGA-AP-A0LV 
       20.91        31.73        82.52        33.40        61.64        25.08 
TCGA-AP-A1DP TCGA-AP-A5FX TCGA-AX-A05T TCGA-AX-A05U TCGA-AX-A05Y TCGA-AX-A06J 
       35.54        33.73        19.82        29.69        72.03        30.02 
TCGA-AX-A06L TCGA-AX-A1C5 TCGA-AX-A1C9 TCGA-AX-A1CE TCGA-AX-A1CJ TCGA-AX-A2H7 
       60.66        19.20        15.25        20.05        54.12        33.53 
TCGA-AX-A2HJ TCGA-AX-A3FW TCGA-AX-A3FX TCGA-AX-A3G1 TCGA-AX-A3GB TCGA-B5-A0JS 
       27.32         0.33         0.13        20.52        14.47        46.75 
TCGA-B5-A0JT TCGA-B5-A0JX TCGA-B5-A0K1 TCGA-B5-A0K2 TCGA-B5-A0KB TCGA-B5-A11G 
       43.13        44.71        30.51        25.91         4.11       113.36 
TCGA-B5-A11H TCGA-B5-A11J TCGA-B5-A11M TCGA-B5-A11O TCGA-B5-A11P TCGA-B5-A11R 
       88.34        54.44        44.78        40.50        36.82        33.50 
TCGA-B5-A11S TCGA-B5-A11W TCGA-B5-A11Y TCGA-B5-A121 TCGA-B5-A1MV TCGA-B5-A3F9 
       27.35        19.50        18.41        16.57        14.40       116.25 
TCGA-B5-A3FB TCGA-B5-A3FD TCGA-BG-A0M0 TCGA-BG-A0M2 TCGA-BG-A0M4 TCGA-BG-A0M7 
       78.81        33.11        19.33        20.94        34.98        38.37 
TCGA-BG-A0M9 TCGA-BG-A0MA TCGA-BG-A0MC TCGA-BG-A0MG TCGA-BG-A0MH TCGA-BG-A0MK 
       28.27        10.72        41.52        48.56        63.45        43.30 
TCGA-BG-A0VV TCGA-BG-A0VW TCGA-BG-A0VZ TCGA-BG-A0W1 TCGA-BG-A0W2 TCGA-BG-A0YU 
       26.66        16.34        52.64        52.83        56.58        14.83 
TCGA-BG-A187 TCGA-BG-A18A TCGA-BG-A18B TCGA-BK-A0C9 TCGA-BK-A0CA TCGA-BK-A13C 
       14.73        14.01        15.45        35.90        34.98        24.99 
TCGA-BK-A56F TCGA-BK-A6W4 TCGA-BS-A0TA TCGA-BS-A0TC TCGA-BS-A0TD TCGA-BS-A0U5 
       13.18         9.86        23.47        85.55        78.21        96.49 
TCGA-BS-A0UA TCGA-BS-A0UM TCGA-BS-A0V6 TCGA-D1-A0ZO TCGA-D1-A0ZR TCGA-D1-A0ZV 
       88.34        86.93        62.79        19.79         0.56        23.93 
TCGA-D1-A15W TCGA-D1-A161 TCGA-D1-A162 TCGA-D1-A165 TCGA-D1-A169 TCGA-D1-A16D 
       30.08        29.33        37.64         0.66        37.32        37.51 
TCGA-D1-A16E TCGA-D1-A16F TCGA-D1-A16O TCGA-D1-A16X TCGA-D1-A176 TCGA-D1-A17A 
       36.79         2.63        33.63         3.65        30.15         1.58 
TCGA-D1-A17B TCGA-D1-A17D TCGA-D1-A17F TCGA-D1-A17N TCGA-D1-A17Q TCGA-D1-A17S 
        7.00        30.44         1.28         1.51         1.78        24.30 
TCGA-D1-A17T TCGA-D1-A17U TCGA-D1-A1NS TCGA-D1-A1NZ TCGA-D1-A1O5 TCGA-D1-A1O7 
        2.33        22.92         1.41        18.02        15.06         1.05 
TCGA-D1-A2G5 TCGA-E6-A2P9 TCGA-EC-A1NJ TCGA-EC-A24G TCGA-EO-A1Y7 TCGA-EO-A22Y 
       41.42         6.67        16.01        16.80        18.81        24.79 
TCGA-EY-A1GE TCGA-EY-A1GF TCGA-EY-A1GH TCGA-EY-A1GK TCGA-EY-A1GW TCGA-EY-A1GX 
       24.36        27.16        23.34        22.78         8.55         6.48 
TCGA-EY-A1H0 TCGA-EY-A548 TCGA-EY-A549 TCGA-FI-A2F4 TCGA-PG-A916 TCGA-QF-A5YS 
       19.33         2.14         6.97        28.96        11.24        18.84 
TCGA-QS-A5YQ TCGA-QS-A5YR 
        4.21         5.52 

subtype1 subtype2 subtype3 
    0.13     0.03     0.13 
subtype1 subtype2 subtype3 
  185.79   191.84   116.25 
subtype1 subtype2 subtype3 
  27.160   18.460   24.115 
[1] "0.1 - 185.8 (27.2)" "0.0 - 191.8 (18.5)" "0.1 - 116.2 (24.1)"
D7V2, continuous
          vv
clus       ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA
  subtype1                                     146
  subtype2                                      95
  subtype3                                     141
          vv
clus       MIXED SEROUS AND ENDOMETRIOID SEROUS ENDOMETRIAL ADENOCARCINOMA
  subtype1                             1                                 0
  subtype2                            15                               104
  subtype3                             4                                 1
D7V3, multiclass
                                         clus
vv                                        subtype1 subtype2 subtype3
  ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA      146       95      141
  MIXED SEROUS AND ENDOMETRIOID                  1       15        4
  SEROUS ENDOMETRIAL ADENOCARCINOMA              0      104        1
[1] 3 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V4, binary
          cls
clus         0   1
  subtype1  55  92
  subtype2  51 163
  subtype3  31 115
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   55   92
  subtype2   51  163
  subtype3   31  115
     clus
vv    subtype1 subtype2 subtype3
  NO        55       51       31
  YES       92      163      115
[1] 2 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus        R0  R1  R2  RX
  subtype1 108   6   4   5
  subtype2 140  13  11  14
  subtype3 103   3   2  11
D7V5, multiclass
    clus
vv   subtype1 subtype2 subtype3
  R0      108      140      103
  R1        6       13        3
  R2        4       11        2
  RX        5       14       11
[1] 4 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       AMERICAN INDIAN OR ALASKA NATIVE ASIAN BLACK OR AFRICAN AMERICAN
  subtype1                                2     6                        18
  subtype2                                1     5                        48
  subtype3                                1     8                        24
          vv
clus       NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER WHITE
  subtype1                                         2   112
  subtype2                                         6   139
  subtype3                                         1   108
D7V6, multiclass
                                           clus
vv                                          subtype1 subtype2 subtype3
  AMERICAN INDIAN OR ALASKA NATIVE                 2        1        1
  ASIAN                                            6        5        8
  BLACK OR AFRICAN AMERICAN                       18       48       24
  NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER        2        6        1
  WHITE                                          112      139      108
[1] 5 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V7, binary
          cls
clus         0   1
  subtype1   3  98
  subtype2   6 150
  subtype3   4 102
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   98
  subtype2    6  150
  subtype3    4  102
                        clus
vv                       subtype1 subtype2 subtype3
  HISPANIC OR LATINO            3        6        4
  NOT HISPANIC OR LATINO       98      150      102
[1] 2 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = MRNASEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2        0   1
  subtype1 186  20
  subtype2 124  32
  subtype3 135   8
subtype1 subtype2 subtype3 
     206      156      143 
subtype1 subtype2 subtype3 
      20       32        8 
$subtype1
TCGA-A5-A0GA TCGA-A5-A0GB TCGA-A5-A0GI TCGA-A5-A0GN TCGA-A5-A0GU TCGA-A5-A0GV 
       17.85        32.78        57.53        60.53        28.27        20.81 
TCGA-A5-A0GW TCGA-A5-A0GX TCGA-A5-A0R7 TCGA-A5-A0VP TCGA-A5-A0VQ TCGA-A5-A2K5 
       23.21        68.65        17.59        42.35        15.95         5.33 
TCGA-A5-A2K7 TCGA-A5-A3LO TCGA-AJ-A23O TCGA-AJ-A3BG TCGA-AJ-A3EK TCGA-AJ-A3EL 
        5.16         7.33         1.97         0.76        14.66        22.49 
TCGA-AJ-A3NC TCGA-AJ-A3NE TCGA-AJ-A3OL TCGA-AJ-A5DW TCGA-AJ-A8CW TCGA-AP-A051 
       36.99        20.65         1.87         2.33         0.13        83.67 
TCGA-AP-A054 TCGA-AP-A056 TCGA-AP-A05N TCGA-AP-A0LE TCGA-AP-A0LG TCGA-AP-A0LL 
       23.31        86.07         7.86       110.37        63.16        83.97 
TCGA-AP-A0LM TCGA-AP-A0LN TCGA-AP-A0LT TCGA-AP-A0LV TCGA-AP-A1DH TCGA-AP-A1DM 
       27.12        82.52        49.22        25.08        71.67        55.89 
TCGA-AP-A1DO TCGA-AP-A1DR TCGA-AP-A1DV TCGA-AP-A1E0 TCGA-AP-A1E1 TCGA-AP-A1E3 
       31.30        49.15         6.71        30.90        10.42        27.85 
TCGA-AX-A05T TCGA-AX-A05Z TCGA-AX-A060 TCGA-AX-A062 TCGA-AX-A063 TCGA-AX-A064 
       19.82        46.45        35.34        45.99        66.58        34.98 
TCGA-AX-A06B TCGA-AX-A06F TCGA-AX-A06H TCGA-AX-A0IS TCGA-AX-A0IZ TCGA-AX-A0J0 
       53.92        51.09        27.39        35.01        43.82        40.11 
TCGA-AX-A0J1 TCGA-AX-A1C4 TCGA-AX-A1CF TCGA-AX-A1CI TCGA-AX-A1CK TCGA-AX-A1CN 
       65.88        13.28        76.83        72.56        67.50        25.12 
TCGA-AX-A2H7 TCGA-AX-A2HA TCGA-AX-A2HC TCGA-AX-A2HD TCGA-AX-A2HH TCGA-AX-A2IN 
       33.53        68.71        33.40        40.50        17.75        31.13 
TCGA-AX-A3FS TCGA-AX-A3FZ TCGA-AX-A3G8 TCGA-AX-A3G9 TCGA-B5-A0JU TCGA-B5-A0JV 
        0.23         0.20         1.18         8.35        48.76        40.67 
TCGA-B5-A0JY TCGA-B5-A0JZ TCGA-B5-A0K0 TCGA-B5-A0K4 TCGA-B5-A0K6 TCGA-B5-A0K7 
       32.55        28.64        28.34        17.88        13.74        17.10 
TCGA-B5-A0K9 TCGA-B5-A11E TCGA-B5-A11F TCGA-B5-A11H TCGA-B5-A11N TCGA-B5-A11P 
       11.01         8.71       185.79        88.34        43.96        36.82 
TCGA-B5-A11Q TCGA-B5-A11U TCGA-B5-A11V TCGA-B5-A11X TCGA-B5-A11Z TCGA-B5-A1MW 
       32.09        16.73        19.56        19.59        17.36        14.70 
TCGA-B5-A1MX TCGA-B5-A1MZ TCGA-B5-A3FC TCGA-B5-A5OC TCGA-BG-A0LW TCGA-BG-A0LX 
       11.70        15.29        62.14        41.06        18.61        20.19 
TCGA-BG-A0M3 TCGA-BG-A0M8 TCGA-BG-A0MI TCGA-BG-A0MO TCGA-BG-A0MQ TCGA-BG-A0MS 
       35.21        36.49        23.47        43.04        39.32        30.81 
TCGA-BG-A0MT TCGA-BG-A0MU TCGA-BG-A0RY TCGA-BG-A0VT TCGA-BG-A0VX TCGA-BG-A186 
       21.17        20.28        15.42        24.39        34.29        13.78 
TCGA-BG-A18C TCGA-BG-A220 TCGA-BG-A222 TCGA-BG-A2AD TCGA-BG-A2AE TCGA-BG-A2L7 
       15.45        14.27         9.57        35.67        23.70        20.12 
TCGA-BG-A3EW TCGA-BK-A0CB TCGA-BK-A13B TCGA-BK-A4ZD TCGA-BS-A0T9 TCGA-BS-A0TG 
       11.31         6.21        31.76        16.64        46.95        77.95 
TCGA-BS-A0TI TCGA-BS-A0TJ TCGA-BS-A0U7 TCGA-BS-A0U8 TCGA-BS-A0U9 TCGA-BS-A0UF 
       61.87        67.99        30.74        97.41        67.20        85.84 
TCGA-BS-A0UJ TCGA-BS-A0UL TCGA-BS-A0UT TCGA-BS-A0V4 TCGA-BS-A0V7 TCGA-BS-A0V8 
       82.39        81.57        72.72        59.51        63.58        49.55 
TCGA-BS-A0VI TCGA-BS-A0WQ TCGA-D1-A0ZN TCGA-D1-A0ZQ TCGA-D1-A0ZS TCGA-D1-A0ZU 
       63.16        66.48        16.83         8.55         4.87        28.67 
TCGA-D1-A102 TCGA-D1-A103 TCGA-D1-A15Z TCGA-D1-A160 TCGA-D1-A163 TCGA-D1-A167 
        4.44        21.99         1.91         3.68        32.58        15.72 
TCGA-D1-A168 TCGA-D1-A16B TCGA-D1-A16N TCGA-D1-A16Q TCGA-D1-A16R TCGA-D1-A16V 
       36.10        36.36        31.07        10.65         0.69         1.41 
TCGA-D1-A174 TCGA-D1-A175 TCGA-D1-A177 TCGA-D1-A17C TCGA-D1-A17H TCGA-D1-A17K 
       19.53         6.64        18.02         0.99        28.01        28.08 
TCGA-D1-A17L TCGA-D1-A17M TCGA-D1-A17N TCGA-D1-A17Q TCGA-D1-A17R TCGA-D1-A17T 
       26.37        10.22         1.51         1.78        11.15         2.33 
TCGA-D1-A1NY TCGA-D1-A1O0 TCGA-D1-A1O8 TCGA-D1-A2G6 TCGA-D1-A3DA TCGA-D1-A3DG 
       16.87         2.07         3.95         8.48         0.26         4.27 
TCGA-DF-A2KZ TCGA-DI-A0WH TCGA-DI-A2QU TCGA-E6-A1LX TCGA-E6-A1M0 TCGA-E6-A2P8 
       27.16        16.31        31.10        23.38        17.06         2.37 
TCGA-EO-A22R TCGA-EO-A22S TCGA-EO-A22U TCGA-EO-A22X TCGA-EO-A3AU TCGA-EY-A1G8 
       31.96        35.05        27.12        57.60        19.36        14.99 
TCGA-EY-A1GC TCGA-EY-A1GD TCGA-EY-A1GI TCGA-EY-A1GL TCGA-EY-A1GP TCGA-EY-A1GQ 
        4.54         8.15        23.34        13.97        18.84        17.88 
TCGA-EY-A1GR TCGA-EY-A1GT TCGA-EY-A1GU TCGA-EY-A214 TCGA-EY-A215 TCGA-EY-A2OM 
       17.62        16.11        12.43        14.40        18.87        22.82 
TCGA-EY-A2OO TCGA-EY-A2OP TCGA-EY-A3QX TCGA-EY-A547 TCGA-EY-A5W2 TCGA-EY-A72D 
       45.76        31.04        13.84        17.92         5.29         5.88 
TCGA-FI-A2D0 TCGA-FI-A2D4 TCGA-FI-A2D5 TCGA-FI-A2D6 TCGA-FI-A2F4 TCGA-PG-A6IB 
       33.99         7.99        13.84         8.98        28.96         9.11 
TCGA-PG-A917 TCGA-QF-A5YT 
        6.97        39.95 

$subtype2
TCGA-A5-A0G1 TCGA-A5-A0G2 TCGA-A5-A0G3 TCGA-A5-A0G5 TCGA-A5-A0GH TCGA-A5-A0GR 
      106.88       149.56        46.95        37.02        74.10        36.82 
TCGA-A5-A0R6 TCGA-A5-A1OF TCGA-A5-A1OG TCGA-A5-A1OH TCGA-A5-A2K2 TCGA-A5-A2K3 
       19.96         7.92        11.44        36.33        91.04        46.32 
TCGA-A5-A2K4 TCGA-A5-A3LP TCGA-AJ-A23M TCGA-AJ-A23N TCGA-AJ-A2QM TCGA-AJ-A3BD 
       28.64        14.96         1.18         1.08         0.85         0.49 
TCGA-AJ-A3BF TCGA-AJ-A3EJ TCGA-AJ-A3EM TCGA-AJ-A3IA TCGA-AJ-A3NF TCGA-AJ-A3NH 
        1.12         1.64        22.26         0.92         1.35         0.76 
TCGA-AJ-A3OJ TCGA-AJ-A3QS TCGA-AJ-A3TW TCGA-AJ-A6NU TCGA-AP-A052 TCGA-AP-A053 
        1.94        16.87         1.71         0.99        21.99         5.95 
TCGA-AP-A059 TCGA-AP-A05A TCGA-AP-A05D TCGA-AP-A05H TCGA-AP-A05J TCGA-AP-A05P 
        8.22        39.42        57.80        45.53        36.89        20.91 
TCGA-AP-A0L8 TCGA-AP-A0L9 TCGA-AP-A0LD TCGA-AP-A0LF TCGA-AP-A0LH TCGA-AP-A0LI 
       48.79       125.42       117.99         3.39        36.36        97.71 
TCGA-AP-A1DQ TCGA-AP-A1E4 TCGA-AP-A3K1 TCGA-AW-A1PO TCGA-AX-A06D TCGA-AX-A0IU 
       41.95        16.24        18.25         0.56        12.26        28.54 
TCGA-AX-A0IW TCGA-AX-A1C7 TCGA-AX-A1C8 TCGA-AX-A1CA TCGA-AX-A1CC TCGA-AX-A1CP 
       37.78        16.96        13.55        20.28        12.43        36.39 
TCGA-AX-A1CR TCGA-AX-A2H2 TCGA-AX-A2H4 TCGA-AX-A2H5 TCGA-AX-A2H8 TCGA-AX-A2HF 
       11.08         4.77        30.12        71.24        61.18        19.36 
TCGA-AX-A2HG TCGA-AX-A2HK TCGA-AX-A2IO TCGA-AX-A3FT TCGA-AX-A3G3 TCGA-AX-A3G4 
       26.33         2.96        38.70         0.10         0.03         0.13 
TCGA-AX-A3G7 TCGA-AX-A3GI TCGA-B5-A0JN TCGA-B5-A0K3 TCGA-B5-A0K8 TCGA-B5-A11I 
        0.23         0.13        80.38        23.01        17.85        75.72 
TCGA-B5-A1MR TCGA-B5-A1MS TCGA-B5-A1MU TCGA-B5-A1MY TCGA-B5-A1N2 TCGA-B5-A3FA 
      191.84       102.31        50.89        11.87        12.79        96.30 
TCGA-B5-A3S1 TCGA-B5-A5OD TCGA-B5-A5OE TCGA-BG-A0M4 TCGA-BG-A0M6 TCGA-BG-A0YV 
        5.03        34.13        34.95        34.98         7.92        12.56 
TCGA-BG-A221 TCGA-BG-A3PP TCGA-BK-A0CC TCGA-BK-A26L TCGA-BS-A0TA TCGA-BS-A0TE 
        1.81         6.81        10.22        24.13        23.47         4.80 
TCGA-D1-A0ZP TCGA-D1-A0ZZ TCGA-D1-A15V TCGA-D1-A15X TCGA-D1-A16G TCGA-D1-A16I 
       29.95        22.55        39.48        29.88        27.42        11.51 
TCGA-D1-A16J TCGA-D1-A16S TCGA-D1-A16Y TCGA-D1-A179 TCGA-D1-A1NU TCGA-D1-A1NW 
       29.92        18.67        17.49         6.77        13.22         0.72 
TCGA-D1-A1NX TCGA-D1-A2G0 TCGA-D1-A2G7 TCGA-D1-A3DH TCGA-DI-A1NN TCGA-DI-A1NO 
       18.25         3.52        44.88         4.11        35.38         9.37 
TCGA-DI-A2QT TCGA-DI-A2QY TCGA-E6-A1LZ TCGA-E6-A8L9 TCGA-EC-A1QX TCGA-EO-A1Y5 
       12.39        91.96        48.36        24.33         7.36        10.92 
TCGA-EO-A1Y8 TCGA-EO-A22T TCGA-EO-A2CG TCGA-EO-A2CH TCGA-EO-A3AS TCGA-EO-A3AV 
       37.71        33.01        32.38        19.40        34.39        35.15 
TCGA-EO-A3AY TCGA-EO-A3AZ TCGA-EO-A3B1 TCGA-EO-A3KU TCGA-EO-A3KW TCGA-EY-A1G7 
       12.89        27.16        26.96        22.26        16.34         6.21 
TCGA-EY-A1GM TCGA-EY-A1GO TCGA-EY-A1GS TCGA-EY-A1GV TCGA-EY-A210 TCGA-EY-A212 
        6.90        19.27        15.09        15.81        12.59         3.62 
TCGA-EY-A2ON TCGA-EY-A2OQ TCGA-EY-A3L3 TCGA-EY-A4KR TCGA-EY-A54A TCGA-FI-A2CX 
       13.45        29.10        27.35         6.44         3.72        40.01 
TCGA-FI-A2CY TCGA-FI-A2D2 TCGA-FI-A2EU TCGA-FI-A2EW TCGA-FI-A2EX TCGA-FI-A2EY 
       34.98        36.00        96.69        59.01         9.07        28.93 
TCGA-FI-A2F8 TCGA-FI-A2F9 TCGA-FI-A3PV TCGA-FI-A3PX TCGA-H5-A2HR TCGA-K6-A3WQ 
       25.02        26.01        41.06        45.01         1.74        13.15 
TCGA-KJ-A3U4 TCGA-PG-A5BC TCGA-PG-A7D5 TCGA-PG-A914 TCGA-PG-A915 TCGA-QF-A5YS 
        2.43        10.82        23.97        12.92         7.00        18.84 

$subtype3
TCGA-A5-A0G9 TCGA-A5-A0GD TCGA-A5-A0GE TCGA-A5-A0GG TCGA-A5-A0GJ TCGA-A5-A0GM 
       83.51         3.22       105.37        87.32        65.75        60.53 
TCGA-A5-A0GP TCGA-A5-A0GQ TCGA-A5-A0R8 TCGA-A5-A0R9 TCGA-A5-A0RA TCGA-A5-A0VO 
       46.55        38.37        19.59        24.62        29.06        11.97 
TCGA-A5-A1OJ TCGA-A5-A1OK TCGA-AJ-A2QK TCGA-AJ-A2QL TCGA-AJ-A2QN TCGA-AJ-A2QO 
        9.60         8.02         0.39        19.79         2.40         3.02 
TCGA-AJ-A3BI TCGA-AJ-A3BK TCGA-AJ-A3I9 TCGA-AJ-A3NG TCGA-AJ-A3OK TCGA-AJ-A8CT 
        2.24         1.68         1.28        15.62        15.95         2.70 
TCGA-AP-A05O TCGA-AP-A0LJ TCGA-AP-A0LO TCGA-AP-A0LP TCGA-AP-A0LS TCGA-AP-A1DK 
       12.20        31.73        33.40        61.64        63.06        60.36 
TCGA-AP-A1DP TCGA-AP-A5FX TCGA-AX-A05S TCGA-AX-A05U TCGA-AX-A05Y TCGA-AX-A06J 
       35.54        33.73        13.58        29.69        72.03        30.02 
TCGA-AX-A06L TCGA-AX-A1C5 TCGA-AX-A1C9 TCGA-AX-A1CE TCGA-AX-A1CJ TCGA-AX-A2HJ 
       60.66        19.20        15.25        20.05        54.12        27.32 
TCGA-AX-A3FW TCGA-AX-A3FX TCGA-AX-A3G1 TCGA-AX-A3GB TCGA-B5-A0JS TCGA-B5-A0JT 
        0.33         0.13        20.52        14.47        46.75        43.13 
TCGA-B5-A0JX TCGA-B5-A0K1 TCGA-B5-A0K2 TCGA-B5-A0KB TCGA-B5-A11G TCGA-B5-A11J 
       44.71        30.51        25.91         4.11       113.36        54.44 
TCGA-B5-A11L TCGA-B5-A11M TCGA-B5-A11O TCGA-B5-A11R TCGA-B5-A11S TCGA-B5-A11W 
       45.90        44.78        40.50        33.50        27.35        19.50 
TCGA-B5-A11Y TCGA-B5-A121 TCGA-B5-A1MV TCGA-B5-A3F9 TCGA-B5-A3FB TCGA-B5-A3FD 
       18.41        16.57        14.40       116.25        78.81        33.11 
TCGA-BG-A0M0 TCGA-BG-A0M2 TCGA-BG-A0M7 TCGA-BG-A0M9 TCGA-BG-A0MA TCGA-BG-A0MC 
       19.33        20.94        38.37        28.27        10.72        41.52 
TCGA-BG-A0MG TCGA-BG-A0MH TCGA-BG-A0MK TCGA-BG-A0VV TCGA-BG-A0VW TCGA-BG-A0VZ 
       48.56        63.45        43.30        26.66        16.34        52.64 
TCGA-BG-A0W1 TCGA-BG-A0W2 TCGA-BG-A0YU TCGA-BG-A187 TCGA-BG-A18A TCGA-BG-A18B 
       52.83        56.58        14.83        14.73        14.01        15.45 
TCGA-BK-A0C9 TCGA-BK-A0CA TCGA-BK-A139 TCGA-BK-A13C TCGA-BK-A56F TCGA-BK-A6W3 
       35.90        34.98        10.16        24.99        13.18        10.03 
TCGA-BK-A6W4 TCGA-BS-A0TC TCGA-BS-A0TD TCGA-BS-A0U5 TCGA-BS-A0UA TCGA-BS-A0UM 
        9.86        85.55        78.21        96.49        88.34        86.93 
TCGA-BS-A0UV TCGA-BS-A0V6 TCGA-D1-A0ZO TCGA-D1-A0ZR TCGA-D1-A0ZV TCGA-D1-A101 
       73.25        62.79        19.79         0.56        23.93         1.74 
TCGA-D1-A15W TCGA-D1-A161 TCGA-D1-A162 TCGA-D1-A165 TCGA-D1-A169 TCGA-D1-A16D 
       30.08        29.33        37.64         0.66        37.32        37.51 
TCGA-D1-A16E TCGA-D1-A16F TCGA-D1-A16O TCGA-D1-A16X TCGA-D1-A176 TCGA-D1-A17A 
       36.79         2.63        33.63         3.65        30.15         1.58 
TCGA-D1-A17B TCGA-D1-A17D TCGA-D1-A17F TCGA-D1-A17S TCGA-D1-A17U TCGA-D1-A1NS 
        7.00        30.44         1.28        24.30        22.92         1.41 
TCGA-D1-A1NZ TCGA-D1-A1O5 TCGA-D1-A1O7 TCGA-D1-A2G5 TCGA-DI-A1BY TCGA-DI-A1C3 
       18.02        15.06         1.05        41.42        36.62        24.30 
TCGA-E6-A2P9 TCGA-EC-A1NJ TCGA-EC-A24G TCGA-EO-A1Y7 TCGA-EO-A22Y TCGA-EY-A1GE 
        6.67        16.01        16.80        18.81        24.79        24.36 
TCGA-EY-A1GF TCGA-EY-A1GH TCGA-EY-A1GK TCGA-EY-A1GW TCGA-EY-A1GX TCGA-EY-A1H0 
       27.16        23.34        22.78         8.55         6.48        19.33 
TCGA-EY-A548 TCGA-EY-A549 TCGA-PG-A916 TCGA-QS-A5YQ TCGA-QS-A5YR 
        2.14         6.97        11.24         4.21         5.52 

subtype1 subtype2 subtype3 
    0.13     0.03     0.13 
subtype1 subtype2 subtype3 
  185.79   191.84   116.25 
subtype1 subtype2 subtype3 
  23.325   19.380   24.300 
[1] "0.1 - 185.8 (23.3)" "0.0 - 191.8 (19.4)" "0.1 - 116.2 (24.3)"
D8V2, continuous
          vv
clus       ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA
  subtype1                                     201
  subtype2                                      42
  subtype3                                     139
          vv
clus       MIXED SEROUS AND ENDOMETRIOID SEROUS ENDOMETRIAL ADENOCARCINOMA
  subtype1                             3                                 2
  subtype2                            14                               102
  subtype3                             3                                 1
D8V3, multiclass
                                         clus
vv                                        subtype1 subtype2 subtype3
  ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA      201       42      139
  MIXED SEROUS AND ENDOMETRIOID                  3       14        3
  SEROUS ENDOMETRIAL ADENOCARCINOMA              2      102        1
[1] 3 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V4, binary
          cls
clus         0   1
  subtype1  64 142
  subtype2  41 117
  subtype3  32 111
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   64  142
  subtype2   41  117
  subtype3   32  111
     clus
vv    subtype1 subtype2 subtype3
  NO        64       41       32
  YES      142      117      111
[1] 2 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus        R0  R1  R2  RX
  subtype1 146  11   4   8
  subtype2 104   9  10  11
  subtype3 101   2   3  11
D8V5, multiclass
    clus
vv   subtype1 subtype2 subtype3
  R0      146      104      101
  R1       11        9        2
  R2        4       10        3
  RX        8       11       11
[1] 4 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       AMERICAN INDIAN OR ALASKA NATIVE ASIAN BLACK OR AFRICAN AMERICAN
  subtype1                                2     6                        28
  subtype2                                1     6                        40
  subtype3                                1     7                        22
          vv
clus       NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER WHITE
  subtype1                                         6   153
  subtype2                                         2    96
  subtype3                                         1   110
D8V6, multiclass
                                           clus
vv                                          subtype1 subtype2 subtype3
  AMERICAN INDIAN OR ALASKA NATIVE                 2        1        1
  ASIAN                                            6        6        7
  BLACK OR AFRICAN AMERICAN                       28       40       22
  NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER        6        2        1
  WHITE                                          153       96      110
[1] 5 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V7, binary
          cls
clus         0   1
  subtype1   4 143
  subtype2   7 104
  subtype3   2 103
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4  143
  subtype2    7  104
  subtype3    2  103
                        clus
vv                       subtype1 subtype2 subtype3
  HISPANIC OR LATINO            4        7        2
  NOT HISPANIC OR LATINO      143      104      103
[1] 2 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = MIRSEQ_CNMF
D9V1, survival
          sevent
clus2        0   1
  subtype1 167  35
  subtype2 125  14
  subtype3 153   8
subtype1 subtype2 subtype3 
     202      139      161 
subtype1 subtype2 subtype3 
      35       14        8 
$subtype1
TCGA-A5-A0G1 TCGA-A5-A0G2 TCGA-A5-A0G3 TCGA-A5-A0G5 TCGA-A5-A0GA TCGA-A5-A0GH 
      106.88       149.56        46.95        37.02        17.85        74.10 
TCGA-A5-A0GR TCGA-A5-A0R6 TCGA-A5-A1OF TCGA-A5-A1OG TCGA-A5-A1OH TCGA-A5-A2K2 
       36.82        19.96         7.92        11.44        36.33        91.04 
TCGA-A5-A2K3 TCGA-A5-A2K4 TCGA-A5-A2K5 TCGA-A5-A2K7 TCGA-A5-A3LO TCGA-A5-A3LP 
       46.32        28.64         5.33         5.16         7.33        14.96 
TCGA-AJ-A23M TCGA-AJ-A23N TCGA-AJ-A2QM TCGA-AJ-A2QO TCGA-AJ-A3BD TCGA-AJ-A3BF 
        1.18         1.08         0.85         3.02         0.49         1.12 
TCGA-AJ-A3BG TCGA-AJ-A3EK TCGA-AJ-A3EL TCGA-AJ-A3EM TCGA-AJ-A3IA TCGA-AJ-A3NF 
        0.76        14.66        22.49        22.26         0.92         1.35 
TCGA-AJ-A3NG TCGA-AJ-A3OJ TCGA-AJ-A3QS TCGA-AJ-A3TW TCGA-AJ-A6NU TCGA-AP-A053 
       15.62         1.94        16.87         1.71         0.99         5.95 
TCGA-AP-A059 TCGA-AP-A0L8 TCGA-AP-A0L9 TCGA-AP-A0LD TCGA-AP-A0LF TCGA-AP-A0LH 
        8.22        48.79       125.42       117.99         3.39        36.36 
TCGA-AP-A0LI TCGA-AP-A1DH TCGA-AP-A1DQ TCGA-AP-A1E3 TCGA-AP-A1E4 TCGA-AP-A3K1 
       97.71        71.67        41.95        27.85        16.24        18.25 
TCGA-AX-A060 TCGA-AX-A06B TCGA-AX-A06F TCGA-AX-A0IU TCGA-AX-A0IW TCGA-AX-A1C7 
       35.34        53.92        51.09        28.54        37.78        16.96 
TCGA-AX-A1C8 TCGA-AX-A1CA TCGA-AX-A1CC TCGA-AX-A1CF TCGA-AX-A1CP TCGA-AX-A1CR 
       13.55        20.28        12.43        76.83        36.39        11.08 
TCGA-AX-A2H2 TCGA-AX-A2H4 TCGA-AX-A2H5 TCGA-AX-A2H8 TCGA-AX-A2HF TCGA-AX-A2HG 
        4.77        30.12        71.24        61.18        19.36        26.33 
TCGA-AX-A2HH TCGA-AX-A2HK TCGA-AX-A2IN TCGA-AX-A2IO TCGA-AX-A3FT TCGA-AX-A3G1 
       17.75         2.96        31.13        38.70         0.10        20.52 
TCGA-AX-A3G3 TCGA-AX-A3G4 TCGA-AX-A3G7 TCGA-AX-A3G9 TCGA-AX-A3GI TCGA-B5-A0JN 
        0.03         0.13         0.23         8.35         0.13        80.38 
TCGA-B5-A0K3 TCGA-B5-A0K4 TCGA-B5-A0K8 TCGA-B5-A0K9 TCGA-B5-A11H TCGA-B5-A11I 
       23.01        17.88        17.85        11.01        88.34        75.72 
TCGA-B5-A11L TCGA-B5-A1MR TCGA-B5-A1MS TCGA-B5-A1MU TCGA-B5-A1MW TCGA-B5-A1MY 
       45.90       191.84       102.31        50.89        14.70        11.87 
TCGA-B5-A1N2 TCGA-B5-A3FA TCGA-B5-A3S1 TCGA-B5-A5OD TCGA-B5-A5OE TCGA-BG-A0LX 
       12.79        96.30         5.03        34.13        34.95        20.19 
TCGA-BG-A0M4 TCGA-BG-A0M6 TCGA-BG-A0MG TCGA-BG-A0MT TCGA-BG-A0YV TCGA-BG-A221 
       34.98         7.92        48.56        21.17        12.56         1.81 
TCGA-BG-A222 TCGA-BG-A2AD TCGA-BG-A2AE TCGA-BG-A3EW TCGA-BG-A3PP TCGA-BK-A0CC 
        9.57        35.67        23.70        11.31         6.81        10.22 
TCGA-BK-A139 TCGA-BK-A26L TCGA-BS-A0TA TCGA-BS-A0TE TCGA-BS-A0TJ TCGA-BS-A0U9 
       10.16        24.13        23.47         4.80        67.99        67.20 
TCGA-BS-A0UF TCGA-BS-A0UV TCGA-BS-A0V8 TCGA-D1-A0ZP TCGA-D1-A0ZZ TCGA-D1-A15V 
       85.84        73.25        49.55        29.95        22.55        39.48 
TCGA-D1-A15X TCGA-D1-A167 TCGA-D1-A16G TCGA-D1-A16I TCGA-D1-A16J TCGA-D1-A16S 
       29.88        15.72        27.42        11.51        29.92        18.67 
TCGA-D1-A16Y TCGA-D1-A179 TCGA-D1-A17C TCGA-D1-A17H TCGA-D1-A1NU TCGA-D1-A1NW 
       17.49         6.77         0.99        28.01        13.22         0.72 
TCGA-D1-A2G0 TCGA-D1-A2G7 TCGA-D1-A3DG TCGA-D1-A3DH TCGA-DI-A1BU TCGA-DI-A1NN 
        3.52        44.88         4.27         4.11        39.29        35.38 
TCGA-DI-A1NO TCGA-DI-A2QT TCGA-DI-A2QU TCGA-DI-A2QY TCGA-E6-A1LZ TCGA-E6-A2P8 
        9.37        12.39        31.10        91.96        48.36         2.37 
TCGA-E6-A8L9 TCGA-EC-A1QX TCGA-EO-A1Y5 TCGA-EO-A1Y8 TCGA-EO-A22T TCGA-EO-A2CG 
       24.33         7.36        10.92        37.71        33.01        32.38 
TCGA-EO-A2CH TCGA-EO-A3AS TCGA-EO-A3AV TCGA-EO-A3AY TCGA-EO-A3AZ TCGA-EO-A3B1 
       19.40        34.39        35.15        12.89        27.16        26.96 
TCGA-EO-A3KU TCGA-EO-A3KW TCGA-EY-A1G7 TCGA-EY-A1GC TCGA-EY-A1GJ TCGA-EY-A1GM 
       22.26        16.34         6.21         4.54        23.90         6.90 
TCGA-EY-A1GO TCGA-EY-A1GP TCGA-EY-A1GS TCGA-EY-A1GT TCGA-EY-A1GV TCGA-EY-A210 
       19.27        18.84        15.09        16.11        15.81        12.59 
TCGA-EY-A212 TCGA-EY-A214 TCGA-EY-A215 TCGA-EY-A2ON TCGA-EY-A2OQ TCGA-EY-A3L3 
        3.62        14.40        18.87        13.45        29.10        27.35 
TCGA-EY-A3QX TCGA-EY-A4KR TCGA-EY-A547 TCGA-EY-A54A TCGA-EY-A72D TCGA-FI-A2CX 
       13.84         6.44        17.92         3.72         5.88        40.01 
TCGA-FI-A2CY TCGA-FI-A2D0 TCGA-FI-A2D2 TCGA-FI-A2D4 TCGA-FI-A2D5 TCGA-FI-A2D6 
       34.98        33.99        36.00         7.99        13.84         8.98 
TCGA-FI-A2EU TCGA-FI-A2EW TCGA-FI-A2EX TCGA-FI-A2EY TCGA-FI-A2F8 TCGA-FI-A2F9 
       96.69        59.01         9.07        28.93        25.02        26.01 
TCGA-FI-A3PV TCGA-FI-A3PX TCGA-H5-A2HR TCGA-K6-A3WQ TCGA-KJ-A3U4 TCGA-PG-A5BC 
       41.06        45.01         1.74        13.15         2.43        10.82 
TCGA-PG-A6IB TCGA-PG-A7D5 TCGA-PG-A914 TCGA-PG-A915 
        9.11        23.97        12.92         7.00 

$subtype2
TCGA-5S-A9Q8 TCGA-A5-A0GI TCGA-A5-A0GN TCGA-A5-A0GP TCGA-A5-A0GV TCGA-A5-A0GW 
        1.08        57.53        60.53        46.55        20.81        23.21 
TCGA-A5-A0GX TCGA-A5-A0R7 TCGA-A5-A0VQ TCGA-AJ-A23O TCGA-AJ-A2QN TCGA-AJ-A3EJ 
       68.65        17.59        15.95         1.97         2.40         1.64 
TCGA-AJ-A3NC TCGA-AJ-A3NE TCGA-AJ-A3NH TCGA-AJ-A3OL TCGA-AJ-A8CW TCGA-AP-A051 
       36.99        20.65         0.76         1.87         0.13        83.67 
TCGA-AP-A054 TCGA-AP-A05P TCGA-AP-A0LE TCGA-AP-A0LG TCGA-AP-A0LL TCGA-AP-A0LM 
       23.31        20.91       110.37        63.16        83.97        27.12 
TCGA-AP-A0LN TCGA-AP-A0LO TCGA-AP-A0LT TCGA-AP-A0LV TCGA-AP-A1DM TCGA-AP-A1DO 
       82.52        33.40        49.22        25.08        55.89        31.30 
TCGA-AP-A1DR TCGA-AP-A1E0 TCGA-AP-A1E1 TCGA-AP-A5FX TCGA-AW-A1PO TCGA-AX-A05U 
       49.15        30.90        10.42        33.73         0.56        29.69 
TCGA-AX-A05Z TCGA-AX-A062 TCGA-AX-A064 TCGA-AX-A06D TCGA-AX-A06J TCGA-AX-A0IS 
       46.45        45.99        34.98        12.26        30.02        35.01 
TCGA-AX-A0IZ TCGA-AX-A0J0 TCGA-AX-A0J1 TCGA-AX-A1C4 TCGA-AX-A1C5 TCGA-AX-A1CI 
       43.82        40.11        65.88        13.28        19.20        72.56 
TCGA-AX-A1CK TCGA-AX-A1CN TCGA-AX-A2HA TCGA-AX-A2HC TCGA-AX-A2HD TCGA-AX-A3FS 
       67.50        25.12        68.71        33.40        40.50         0.23 
TCGA-AX-A3FZ TCGA-AX-A3G8 TCGA-B5-A0JR TCGA-B5-A0JU TCGA-B5-A0JV TCGA-B5-A0JY 
        0.20         1.18        56.91        48.76        40.67        32.55 
TCGA-B5-A0JZ TCGA-B5-A0K0 TCGA-B5-A0K6 TCGA-B5-A0K7 TCGA-B5-A11E TCGA-B5-A11F 
       28.64        28.34        13.74        17.10         8.71       185.79 
TCGA-B5-A11U TCGA-B5-A11V TCGA-B5-A11X TCGA-B5-A11Z TCGA-B5-A1MZ TCGA-B5-A3FB 
       16.73        19.56        19.59        17.36        15.29        78.81 
TCGA-B5-A5OC TCGA-BG-A0LW TCGA-BG-A0M3 TCGA-BG-A0MI TCGA-BG-A0MO TCGA-BG-A0MQ 
       41.06        18.61        35.21        23.47        43.04        39.32 
TCGA-BG-A0MS TCGA-BG-A0MU TCGA-BG-A0RY TCGA-BG-A0VT TCGA-BG-A0VX TCGA-BG-A0W2 
       30.81        20.28        15.42        24.39        34.29        56.58 
TCGA-BG-A186 TCGA-BG-A18C TCGA-BK-A13B TCGA-BK-A13C TCGA-BK-A4ZD TCGA-BS-A0T9 
       13.78        15.45        31.76        24.99        16.64        46.95 
TCGA-BS-A0TI TCGA-BS-A0U5 TCGA-BS-A0U7 TCGA-BS-A0U8 TCGA-BS-A0UT TCGA-BS-A0V4 
       61.87        96.49        30.74        97.41        72.72        59.51 
TCGA-BS-A0V7 TCGA-BS-A0VI TCGA-BS-A0WQ TCGA-D1-A0ZN TCGA-D1-A0ZQ TCGA-D1-A0ZS 
       63.58        63.16        66.48        16.83         8.55         4.87 
TCGA-D1-A102 TCGA-D1-A15Z TCGA-D1-A160 TCGA-D1-A163 TCGA-D1-A168 TCGA-D1-A16N 
        4.44         1.91         3.68        32.58        36.10        31.07 
TCGA-D1-A16R TCGA-D1-A177 TCGA-D1-A17K TCGA-D1-A17M TCGA-D1-A17R TCGA-D1-A1NY 
        0.69        18.02        28.08        10.22        11.15        16.87 
TCGA-D1-A1O8 TCGA-D1-A2G6 TCGA-D1-A3DA TCGA-DF-A2KZ TCGA-DI-A0WH TCGA-DI-A1C3 
        3.95         8.48         0.26        27.16        16.31        24.30 
TCGA-E6-A1LX TCGA-E6-A1M0 TCGA-EO-A22R TCGA-EO-A22S TCGA-EO-A22U TCGA-EO-A22X 
       23.38        17.06        31.96        35.05        27.12        57.60 
TCGA-EO-A3AU TCGA-EY-A1G8 TCGA-EY-A1GD TCGA-EY-A1GL TCGA-EY-A1GQ TCGA-EY-A1GR 
       19.36        14.99         8.15        13.97        17.88        17.62 
TCGA-EY-A2OM TCGA-EY-A2OO TCGA-EY-A2OP TCGA-EY-A548 TCGA-EY-A5W2 TCGA-PG-A917 
       22.82        45.76        31.04         2.14         5.29         6.97 
TCGA-QF-A5YT 
       39.95 

$subtype3
TCGA-A5-A0G9 TCGA-A5-A0GB TCGA-A5-A0GD TCGA-A5-A0GE TCGA-A5-A0GG TCGA-A5-A0GJ 
       83.51        32.78         3.22       105.37        87.32        65.75 
TCGA-A5-A0GM TCGA-A5-A0GQ TCGA-A5-A0GU TCGA-A5-A0R8 TCGA-A5-A0R9 TCGA-A5-A0RA 
       60.53        38.37        28.27        19.59        24.62        29.06 
TCGA-A5-A0VO TCGA-A5-A0VP TCGA-A5-A1OJ TCGA-A5-A1OK TCGA-AJ-A2QK TCGA-AJ-A2QL 
       11.97        42.35         9.60         8.02         0.39        19.79 
TCGA-AJ-A3BI TCGA-AJ-A3BK TCGA-AJ-A3I9 TCGA-AJ-A3OK TCGA-AJ-A5DW TCGA-AJ-A8CT 
        2.24         1.68         1.28        15.95         2.33         2.70 
TCGA-AP-A05O TCGA-AP-A0LJ TCGA-AP-A0LP TCGA-AP-A0LQ TCGA-AP-A0LS TCGA-AP-A1DK 
       12.20        31.73        61.64        80.78        63.06        60.36 
TCGA-AP-A1DP TCGA-AP-A1DV TCGA-AX-A05S TCGA-AX-A05T TCGA-AX-A05W TCGA-AX-A05Y 
       35.54         6.71        13.58        19.82        68.35        72.03 
TCGA-AX-A063 TCGA-AX-A06H TCGA-AX-A06L TCGA-AX-A1C9 TCGA-AX-A1CE TCGA-AX-A1CJ 
       66.58        27.39        60.66        15.25        20.05        54.12 
TCGA-AX-A2H7 TCGA-AX-A2HJ TCGA-AX-A3FW TCGA-AX-A3FX TCGA-AX-A3GB TCGA-B5-A0JS 
       33.53        27.32         0.33         0.13        14.47        46.75 
TCGA-B5-A0JT TCGA-B5-A0JX TCGA-B5-A0K1 TCGA-B5-A0K2 TCGA-B5-A0KB TCGA-B5-A11G 
       43.13        44.71        30.51        25.91         4.11       113.36 
TCGA-B5-A11J TCGA-B5-A11M TCGA-B5-A11N TCGA-B5-A11O TCGA-B5-A11P TCGA-B5-A11Q 
       54.44        44.78        43.96        40.50        36.82        32.09 
TCGA-B5-A11R TCGA-B5-A11S TCGA-B5-A11W TCGA-B5-A11Y TCGA-B5-A121 TCGA-B5-A1MV 
       33.50        27.35        19.50        18.41        16.57        14.40 
TCGA-B5-A1MX TCGA-B5-A3F9 TCGA-B5-A3FC TCGA-B5-A3FD TCGA-BG-A0M0 TCGA-BG-A0M2 
       11.70       116.25        62.14        33.11        19.33        20.94 
TCGA-BG-A0M7 TCGA-BG-A0M8 TCGA-BG-A0M9 TCGA-BG-A0MA TCGA-BG-A0MC TCGA-BG-A0MH 
       38.37        36.49        28.27        10.72        41.52        63.45 
TCGA-BG-A0MK TCGA-BG-A0VV TCGA-BG-A0VW TCGA-BG-A0VZ TCGA-BG-A0W1 TCGA-BG-A0YU 
       43.30        26.66        16.34        52.64        52.83        14.83 
TCGA-BG-A187 TCGA-BG-A18A TCGA-BG-A18B TCGA-BG-A2L7 TCGA-BK-A0C9 TCGA-BK-A0CA 
       14.73        14.01        15.45        20.12        35.90        34.98 
TCGA-BK-A56F TCGA-BK-A6W3 TCGA-BK-A6W4 TCGA-BS-A0TC TCGA-BS-A0TD TCGA-BS-A0TG 
       13.18        10.03         9.86        85.55        78.21        77.95 
TCGA-BS-A0UA TCGA-BS-A0UJ TCGA-BS-A0UL TCGA-BS-A0UM TCGA-BS-A0V6 TCGA-D1-A0ZO 
       88.34        82.39        81.57        86.93        62.79        19.79 
TCGA-D1-A0ZR TCGA-D1-A0ZU TCGA-D1-A0ZV TCGA-D1-A101 TCGA-D1-A103 TCGA-D1-A15W 
        0.56        28.67        23.93         1.74        21.99        30.08 
TCGA-D1-A161 TCGA-D1-A162 TCGA-D1-A165 TCGA-D1-A169 TCGA-D1-A16B TCGA-D1-A16D 
       29.33        37.64         0.66        37.32        36.36        37.51 
TCGA-D1-A16E TCGA-D1-A16F TCGA-D1-A16O TCGA-D1-A16Q TCGA-D1-A16V TCGA-D1-A16X 
       36.79         2.63        33.63        10.65         1.41         3.65 
TCGA-D1-A174 TCGA-D1-A175 TCGA-D1-A176 TCGA-D1-A17A TCGA-D1-A17B TCGA-D1-A17D 
       19.53         6.64        30.15         1.58         7.00        30.44 
TCGA-D1-A17F TCGA-D1-A17L TCGA-D1-A17N TCGA-D1-A17Q TCGA-D1-A17S TCGA-D1-A17T 
        1.28        26.37         1.51         1.78        24.30         2.33 
TCGA-D1-A17U TCGA-D1-A1NS TCGA-D1-A1NX TCGA-D1-A1NZ TCGA-D1-A1O0 TCGA-D1-A1O5 
       22.92         1.41        18.25        18.02         2.07        15.06 
TCGA-D1-A1O7 TCGA-D1-A2G5 TCGA-DI-A1BY TCGA-E6-A2P9 TCGA-EC-A1NJ TCGA-EC-A24G 
        1.05        41.42        36.62         6.67        16.01        16.80 
TCGA-EO-A1Y7 TCGA-EO-A22Y TCGA-EY-A1GE TCGA-EY-A1GF TCGA-EY-A1GH TCGA-EY-A1GI 
       18.81        24.79        24.36        27.16        23.34        23.34 
TCGA-EY-A1GK TCGA-EY-A1GU TCGA-EY-A1GW TCGA-EY-A1GX TCGA-EY-A1H0 TCGA-EY-A549 
       22.78        12.43         8.55         6.48        19.33         6.97 
TCGA-FI-A2F4 TCGA-PG-A916 TCGA-QF-A5YS TCGA-QS-A5YQ TCGA-QS-A5YR 
       28.96        11.24        18.84         4.21         5.52 

subtype1 subtype2 subtype3 
    0.03     0.13     0.13 
subtype1 subtype2 subtype3 
  191.84   185.79   116.25 
subtype1 subtype2 subtype3 
  18.855   27.120   23.930 
[1] "0.0 - 191.8 (18.9)" "0.1 - 185.8 (27.1)" "0.1 - 116.2 (23.9)"
D9V2, continuous
          vv
clus       ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA
  subtype1                                      91
  subtype2                                     135
  subtype3                                     157
          vv
clus       MIXED SEROUS AND ENDOMETRIOID SEROUS ENDOMETRIAL ADENOCARCINOMA
  subtype1                            16                                97
  subtype2                             3                                 1
  subtype3                             2                                 2
D9V3, multiclass
                                         clus
vv                                        subtype1 subtype2 subtype3
  ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA       91      135      157
  MIXED SEROUS AND ENDOMETRIOID                 16        3        2
  SEROUS ENDOMETRIAL ADENOCARCINOMA             97        1        2
[1] 3 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V4, binary
          cls
clus         0   1
  subtype1  51 153
  subtype2  39 100
  subtype3  44 117
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   51  153
  subtype2   39  100
  subtype3   44  117
     clus
vv    subtype1 subtype2 subtype3
  NO        51       39       44
  YES      153      100      117
[1] 2 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus        R0  R1  R2  RX
  subtype1 132  12  11  13
  subtype2  99   6   3   7
  subtype3 118   4   2  10
D9V5, multiclass
    clus
vv   subtype1 subtype2 subtype3
  R0      132       99      118
  R1       12        6        4
  R2       11        3        2
  RX       13        7       10
[1] 4 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       AMERICAN INDIAN OR ALASKA NATIVE ASIAN BLACK OR AFRICAN AMERICAN
  subtype1                                2     7                        44
  subtype2                                1     5                        24
  subtype3                                1     7                        23
          vv
clus       NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER WHITE
  subtype1                                         6   130
  subtype2                                         2    99
  subtype3                                         1   126
D9V6, multiclass
                                           clus
vv                                          subtype1 subtype2 subtype3
  AMERICAN INDIAN OR ALASKA NATIVE                 2        1        1
  ASIAN                                            7        5        7
  BLACK OR AFRICAN AMERICAN                       44       24       23
  NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER        6        2        1
  WHITE                                          130       99      126
[1] 5 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V7, binary
          cls
clus         0   1
  subtype1   9 142
  subtype2   2  91
  subtype3   2 119
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9  142
  subtype2    2   91
  subtype3    2  119
                        clus
vv                       subtype1 subtype2 subtype3
  HISPANIC OR LATINO            9        2        2
  NOT HISPANIC OR LATINO      142       91      119
[1] 2 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = MIRSEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2        0   1
  subtype1 131   9
  subtype2  55   3
  subtype3  87  24
  subtype4 172  21
subtype1 subtype2 subtype3 subtype4 
     140       58      111      193 
subtype1 subtype2 subtype3 subtype4 
       9        3       24       21 
$subtype1
TCGA-A5-A0G9 TCGA-A5-A0GB TCGA-A5-A0GD TCGA-A5-A0GE TCGA-A5-A0GG TCGA-A5-A0GQ 
       83.51        32.78         3.22       105.37        87.32        38.37 
TCGA-A5-A0R8 TCGA-A5-A0R9 TCGA-A5-A0RA TCGA-A5-A0VO TCGA-A5-A0VP TCGA-A5-A1OJ 
       19.59        24.62        29.06        11.97        42.35         9.60 
TCGA-A5-A1OK TCGA-AJ-A2QK TCGA-AJ-A2QL TCGA-AJ-A3BI TCGA-AJ-A3BK TCGA-AJ-A3I9 
        8.02         0.39        19.79         2.24         1.68         1.28 
TCGA-AJ-A3OK TCGA-AJ-A8CT TCGA-AP-A05O TCGA-AP-A0LP TCGA-AP-A0LQ TCGA-AP-A0LS 
       15.95         2.70        12.20        61.64        80.78        63.06 
TCGA-AP-A1DP TCGA-AP-A1E1 TCGA-AX-A05W TCGA-AX-A05Y TCGA-AX-A06D TCGA-AX-A06J 
       35.54        10.42        68.35        72.03        12.26        30.02 
TCGA-AX-A06L TCGA-AX-A1C5 TCGA-AX-A1C9 TCGA-AX-A1CE TCGA-AX-A1CJ TCGA-AX-A2H7 
       60.66        19.20        15.25        20.05        54.12        33.53 
TCGA-AX-A2H8 TCGA-AX-A2HJ TCGA-AX-A3FW TCGA-AX-A3FX TCGA-AX-A3G1 TCGA-B5-A0JS 
       61.18        27.32         0.33         0.13        20.52        46.75 
TCGA-B5-A0JT TCGA-B5-A0JV TCGA-B5-A0JX TCGA-B5-A0K1 TCGA-B5-A0K2 TCGA-B5-A0KB 
       43.13        40.67        44.71        30.51        25.91         4.11 
TCGA-B5-A11G TCGA-B5-A11J TCGA-B5-A11M TCGA-B5-A11O TCGA-B5-A11R TCGA-B5-A11S 
      113.36        54.44        44.78        40.50        33.50        27.35 
TCGA-B5-A11W TCGA-B5-A11Y TCGA-B5-A121 TCGA-B5-A1MV TCGA-B5-A3F9 TCGA-B5-A3FD 
       19.50        18.41        16.57        14.40       116.25        33.11 
TCGA-BG-A0M0 TCGA-BG-A0M2 TCGA-BG-A0M9 TCGA-BG-A0MA TCGA-BG-A0MC TCGA-BG-A0MG 
       19.33        20.94        28.27        10.72        41.52        48.56 
TCGA-BG-A0MH TCGA-BG-A0MK TCGA-BG-A0MT TCGA-BG-A0RY TCGA-BG-A0VV TCGA-BG-A0VW 
       63.45        43.30        21.17        15.42        26.66        16.34 
TCGA-BG-A0VZ TCGA-BG-A0W1 TCGA-BG-A0YU TCGA-BG-A187 TCGA-BG-A18A TCGA-BG-A18B 
       52.64        52.83        14.83        14.73        14.01        15.45 
TCGA-BG-A2L7 TCGA-BK-A0C9 TCGA-BK-A0CA TCGA-BK-A13C TCGA-BK-A56F TCGA-BS-A0TA 
       20.12        35.90        34.98        24.99        13.18        23.47 
TCGA-BS-A0TC TCGA-BS-A0TD TCGA-BS-A0U5 TCGA-BS-A0UM TCGA-BS-A0UV TCGA-BS-A0V6 
       85.55        78.21        96.49        86.93        73.25        62.79 
TCGA-D1-A0ZO TCGA-D1-A0ZR TCGA-D1-A0ZV TCGA-D1-A15W TCGA-D1-A161 TCGA-D1-A162 
       19.79         0.56        23.93        30.08        29.33        37.64 
TCGA-D1-A165 TCGA-D1-A169 TCGA-D1-A16B TCGA-D1-A16D TCGA-D1-A16E TCGA-D1-A16F 
        0.66        37.32        36.36        37.51        36.79         2.63 
TCGA-D1-A16O TCGA-D1-A16X TCGA-D1-A174 TCGA-D1-A176 TCGA-D1-A17A TCGA-D1-A17B 
       33.63         3.65        19.53        30.15         1.58         7.00 
TCGA-D1-A17D TCGA-D1-A17F TCGA-D1-A17L TCGA-D1-A17Q TCGA-D1-A17S TCGA-D1-A17T 
       30.44         1.28        26.37         1.78        24.30         2.33 
TCGA-D1-A17U TCGA-D1-A1NS TCGA-D1-A1NX TCGA-D1-A1NZ TCGA-D1-A1O0 TCGA-D1-A1O5 
       22.92         1.41        18.25        18.02         2.07        15.06 
TCGA-D1-A1O7 TCGA-D1-A2G5 TCGA-DI-A1BY TCGA-E6-A2P9 TCGA-EC-A24G TCGA-EO-A1Y7 
        1.05        41.42        36.62         6.67        16.80        18.81 
TCGA-EO-A22Y TCGA-EO-A2CH TCGA-EY-A1GE TCGA-EY-A1GF TCGA-EY-A1GH TCGA-EY-A1GK 
       24.79        19.40        24.36        27.16        23.34        22.78 
TCGA-EY-A1GW TCGA-EY-A1GX TCGA-EY-A1H0 TCGA-EY-A549 TCGA-FI-A2F4 TCGA-PG-A916 
        8.55         6.48        19.33         6.97        28.96        11.24 
TCGA-QS-A5YQ TCGA-QS-A5YR 
        4.21         5.52 

$subtype2
TCGA-5S-A9Q8 TCGA-A5-A0GI TCGA-A5-A0GM TCGA-A5-A0GU TCGA-A5-A0GV TCGA-A5-A0GX 
        1.08        57.53        60.53        28.27        20.81        68.65 
TCGA-AJ-A3NC TCGA-AP-A0LJ TCGA-AP-A0LL TCGA-AP-A0LN TCGA-AP-A0LV TCGA-AX-A05T 
       36.99        31.73        83.97        82.52        25.08        19.82 
TCGA-AX-A05U TCGA-AX-A05Z TCGA-AX-A062 TCGA-AX-A0IS TCGA-AX-A1C4 TCGA-AX-A1CK 
       29.69        46.45        45.99        35.01        13.28        67.50 
TCGA-AX-A3GB TCGA-B5-A0K0 TCGA-B5-A0K6 TCGA-B5-A0K7 TCGA-B5-A11F TCGA-B5-A11L 
       14.47        28.34        13.74        17.10       185.79        45.90 
TCGA-B5-A11V TCGA-B5-A11Z TCGA-B5-A1MZ TCGA-BG-A0LW TCGA-BG-A0M3 TCGA-BG-A0MI 
       19.56        17.36        15.29        18.61        35.21        23.47 
TCGA-BG-A0MO TCGA-BG-A0MS TCGA-BG-A0MU TCGA-BG-A0VT TCGA-BG-A0VX TCGA-BG-A0W2 
       43.04        30.81        20.28        24.39        34.29        56.58 
TCGA-BG-A186 TCGA-BG-A18C TCGA-BK-A13B TCGA-BS-A0T9 TCGA-BS-A0TG TCGA-BS-A0TI 
       13.78        15.45        31.76        46.95        77.95        61.87 
TCGA-BS-A0U8 TCGA-BS-A0UJ TCGA-BS-A0UT TCGA-BS-A0V7 TCGA-BS-A0WQ TCGA-D1-A0ZN 
       97.41        82.39        72.72        63.58        66.48        16.83 
TCGA-D1-A102 TCGA-D1-A16Q TCGA-D1-A16R TCGA-D1-A17C TCGA-D1-A17N TCGA-D1-A1O8 
        4.44        10.65         0.69         0.99         1.51         3.95 
TCGA-DI-A1C3 TCGA-EY-A1GD TCGA-EY-A1GL TCGA-QF-A5YT 
       24.30         8.15        13.97        39.95 

$subtype3
TCGA-A5-A0G2 TCGA-A5-A0G3 TCGA-A5-A0G5 TCGA-A5-A0GA TCGA-A5-A0GH TCGA-A5-A0GR 
      149.56        46.95        37.02        17.85        74.10        36.82 
TCGA-A5-A0R6 TCGA-A5-A1OG TCGA-A5-A1OH TCGA-A5-A2K2 TCGA-A5-A2K3 TCGA-A5-A2K4 
       19.96        11.44        36.33        91.04        46.32        28.64 
TCGA-A5-A3LP TCGA-AJ-A23M TCGA-AJ-A23N TCGA-AJ-A2QM TCGA-AJ-A3BD TCGA-AJ-A3BF 
       14.96         1.18         1.08         0.85         0.49         1.12 
TCGA-AJ-A3EM TCGA-AJ-A3NH TCGA-AP-A0L8 TCGA-AP-A0LF TCGA-AP-A0LH TCGA-AP-A0LI 
       22.26         0.76        48.79         3.39        36.36        97.71 
TCGA-AP-A1DQ TCGA-AP-A3K1 TCGA-AX-A06F TCGA-AX-A0IU TCGA-AX-A0IW TCGA-AX-A0J0 
       41.95        18.25        51.09        28.54        37.78        40.11 
TCGA-AX-A0J1 TCGA-AX-A1C7 TCGA-AX-A1C8 TCGA-AX-A1CA TCGA-AX-A1CP TCGA-AX-A1CR 
       65.88        16.96        13.55        20.28        36.39        11.08 
TCGA-AX-A2H2 TCGA-AX-A2H4 TCGA-AX-A2HF TCGA-AX-A2HK TCGA-AX-A2IN TCGA-AX-A2IO 
        4.77        30.12        19.36         2.96        31.13        38.70 
TCGA-AX-A3G3 TCGA-AX-A3G4 TCGA-AX-A3G7 TCGA-AX-A3GI TCGA-B5-A0K3 TCGA-B5-A0K8 
        0.03         0.13         0.23         0.13        23.01        17.85 
TCGA-B5-A0K9 TCGA-B5-A11I TCGA-B5-A1MS TCGA-B5-A1MY TCGA-B5-A3S1 TCGA-B5-A5OD 
       11.01        75.72       102.31        11.87         5.03        34.13 
TCGA-B5-A5OE TCGA-BG-A0M4 TCGA-BG-A0M6 TCGA-BK-A0CC TCGA-BK-A26L TCGA-D1-A0ZP 
       34.95        34.98         7.92        10.22        24.13        29.95 
TCGA-D1-A0ZZ TCGA-D1-A15V TCGA-D1-A15X TCGA-D1-A16G TCGA-D1-A16I TCGA-D1-A16S 
       22.55        39.48        29.88        27.42        11.51        18.67 
TCGA-D1-A16Y TCGA-D1-A179 TCGA-D1-A1NU TCGA-D1-A1NW TCGA-D1-A2G0 TCGA-D1-A2G7 
       17.49         6.77        13.22         0.72         3.52        44.88 
TCGA-D1-A3DG TCGA-D1-A3DH TCGA-DI-A1NN TCGA-DI-A2QT TCGA-DI-A2QY TCGA-E6-A1LZ 
        4.27         4.11        35.38        12.39        91.96        48.36 
TCGA-E6-A8L9 TCGA-EO-A1Y5 TCGA-EO-A1Y8 TCGA-EO-A2CG TCGA-EO-A3B1 TCGA-EO-A3KU 
       24.33        10.92        37.71        32.38        26.96        22.26 
TCGA-EO-A3KW TCGA-EY-A1GM TCGA-EY-A1GP TCGA-EY-A1GS TCGA-EY-A1GV TCGA-EY-A210 
       16.34         6.90        18.84        15.09        15.81        12.59 
TCGA-EY-A212 TCGA-EY-A2ON TCGA-EY-A3L3 TCGA-EY-A4KR TCGA-FI-A2CY TCGA-FI-A2D2 
        3.62        13.45        27.35         6.44        34.98        36.00 
TCGA-FI-A2EU TCGA-FI-A2EW TCGA-FI-A2EX TCGA-FI-A2EY TCGA-FI-A2F8 TCGA-FI-A2F9 
       96.69        59.01         9.07        28.93        25.02        26.01 
TCGA-FI-A3PV TCGA-FI-A3PX TCGA-H5-A2HR TCGA-K6-A3WQ TCGA-KJ-A3U4 TCGA-PG-A5BC 
       41.06        45.01         1.74        13.15         2.43        10.82 
TCGA-PG-A7D5 TCGA-PG-A914 TCGA-PG-A915 
       23.97        12.92         7.00 

$subtype4
TCGA-A5-A0G1 TCGA-A5-A0GJ TCGA-A5-A0GN TCGA-A5-A0GP TCGA-A5-A0GW TCGA-A5-A0R7 
      106.88        65.75        60.53        46.55        23.21        17.59 
TCGA-A5-A0VQ TCGA-A5-A1OF TCGA-A5-A2K5 TCGA-A5-A2K7 TCGA-A5-A3LO TCGA-AJ-A23O 
       15.95         7.92         5.33         5.16         7.33         1.97 
TCGA-AJ-A2QN TCGA-AJ-A2QO TCGA-AJ-A3BG TCGA-AJ-A3EJ TCGA-AJ-A3EK TCGA-AJ-A3EL 
        2.40         3.02         0.76         1.64        14.66        22.49 
TCGA-AJ-A3IA TCGA-AJ-A3NE TCGA-AJ-A3NF TCGA-AJ-A3NG TCGA-AJ-A3OJ TCGA-AJ-A3OL 
        0.92        20.65         1.35        15.62         1.94         1.87 
TCGA-AJ-A3QS TCGA-AJ-A3TW TCGA-AJ-A5DW TCGA-AJ-A6NU TCGA-AJ-A8CW TCGA-AP-A051 
       16.87         1.71         2.33         0.99         0.13        83.67 
TCGA-AP-A053 TCGA-AP-A054 TCGA-AP-A059 TCGA-AP-A05P TCGA-AP-A0L9 TCGA-AP-A0LD 
        5.95        23.31         8.22        20.91       125.42       117.99 
TCGA-AP-A0LE TCGA-AP-A0LG TCGA-AP-A0LM TCGA-AP-A0LO TCGA-AP-A0LT TCGA-AP-A1DH 
      110.37        63.16        27.12        33.40        49.22        71.67 
TCGA-AP-A1DK TCGA-AP-A1DM TCGA-AP-A1DO TCGA-AP-A1DR TCGA-AP-A1DV TCGA-AP-A1E0 
       60.36        55.89        31.30        49.15         6.71        30.90 
TCGA-AP-A1E3 TCGA-AP-A1E4 TCGA-AP-A5FX TCGA-AW-A1PO TCGA-AX-A05S TCGA-AX-A060 
       27.85        16.24        33.73         0.56        13.58        35.34 
TCGA-AX-A063 TCGA-AX-A064 TCGA-AX-A06B TCGA-AX-A06H TCGA-AX-A0IZ TCGA-AX-A1CC 
       66.58        34.98        53.92        27.39        43.82        12.43 
TCGA-AX-A1CF TCGA-AX-A1CI TCGA-AX-A1CN TCGA-AX-A2H5 TCGA-AX-A2HA TCGA-AX-A2HC 
       76.83        72.56        25.12        71.24        68.71        33.40 
TCGA-AX-A2HD TCGA-AX-A2HG TCGA-AX-A2HH TCGA-AX-A3FS TCGA-AX-A3FT TCGA-AX-A3FZ 
       40.50        26.33        17.75         0.23         0.10         0.20 
TCGA-AX-A3G8 TCGA-AX-A3G9 TCGA-B5-A0JN TCGA-B5-A0JR TCGA-B5-A0JU TCGA-B5-A0JY 
        1.18         8.35        80.38        56.91        48.76        32.55 
TCGA-B5-A0JZ TCGA-B5-A0K4 TCGA-B5-A11E TCGA-B5-A11H TCGA-B5-A11N TCGA-B5-A11P 
       28.64        17.88         8.71        88.34        43.96        36.82 
TCGA-B5-A11Q TCGA-B5-A11U TCGA-B5-A11X TCGA-B5-A1MR TCGA-B5-A1MU TCGA-B5-A1MW 
       32.09        16.73        19.59       191.84        50.89        14.70 
TCGA-B5-A1MX TCGA-B5-A1N2 TCGA-B5-A3FA TCGA-B5-A3FB TCGA-B5-A3FC TCGA-B5-A5OC 
       11.70        12.79        96.30        78.81        62.14        41.06 
TCGA-BG-A0LX TCGA-BG-A0M7 TCGA-BG-A0M8 TCGA-BG-A0MQ TCGA-BG-A0YV TCGA-BG-A221 
       20.19        38.37        36.49        39.32        12.56         1.81 
TCGA-BG-A222 TCGA-BG-A2AD TCGA-BG-A2AE TCGA-BG-A3EW TCGA-BG-A3PP TCGA-BK-A139 
        9.57        35.67        23.70        11.31         6.81        10.16 
TCGA-BK-A4ZD TCGA-BK-A6W3 TCGA-BK-A6W4 TCGA-BS-A0TE TCGA-BS-A0TJ TCGA-BS-A0U7 
       16.64        10.03         9.86         4.80        67.99        30.74 
TCGA-BS-A0U9 TCGA-BS-A0UA TCGA-BS-A0UF TCGA-BS-A0UL TCGA-BS-A0V4 TCGA-BS-A0V8 
       67.20        88.34        85.84        81.57        59.51        49.55 
TCGA-BS-A0VI TCGA-D1-A0ZQ TCGA-D1-A0ZS TCGA-D1-A0ZU TCGA-D1-A101 TCGA-D1-A103 
       63.16         8.55         4.87        28.67         1.74        21.99 
TCGA-D1-A15Z TCGA-D1-A160 TCGA-D1-A163 TCGA-D1-A167 TCGA-D1-A168 TCGA-D1-A16J 
        1.91         3.68        32.58        15.72        36.10        29.92 
TCGA-D1-A16N TCGA-D1-A16V TCGA-D1-A175 TCGA-D1-A177 TCGA-D1-A17H TCGA-D1-A17K 
       31.07         1.41         6.64        18.02        28.01        28.08 
TCGA-D1-A17M TCGA-D1-A17R TCGA-D1-A1NY TCGA-D1-A2G6 TCGA-D1-A3DA TCGA-DF-A2KZ 
       10.22        11.15        16.87         8.48         0.26        27.16 
TCGA-DI-A0WH TCGA-DI-A1BU TCGA-DI-A1NO TCGA-DI-A2QU TCGA-E6-A1LX TCGA-E6-A1M0 
       16.31        39.29         9.37        31.10        23.38        17.06 
TCGA-E6-A2P8 TCGA-EC-A1NJ TCGA-EC-A1QX TCGA-EO-A22R TCGA-EO-A22S TCGA-EO-A22T 
        2.37        16.01         7.36        31.96        35.05        33.01 
TCGA-EO-A22U TCGA-EO-A22X TCGA-EO-A3AS TCGA-EO-A3AU TCGA-EO-A3AV TCGA-EO-A3AY 
       27.12        57.60        34.39        19.36        35.15        12.89 
TCGA-EO-A3AZ TCGA-EY-A1G7 TCGA-EY-A1G8 TCGA-EY-A1GC TCGA-EY-A1GI TCGA-EY-A1GJ 
       27.16         6.21        14.99         4.54        23.34        23.90 
TCGA-EY-A1GO TCGA-EY-A1GQ TCGA-EY-A1GR TCGA-EY-A1GT TCGA-EY-A1GU TCGA-EY-A214 
       19.27        17.88        17.62        16.11        12.43        14.40 
TCGA-EY-A215 TCGA-EY-A2OM TCGA-EY-A2OO TCGA-EY-A2OP TCGA-EY-A2OQ TCGA-EY-A3QX 
       18.87        22.82        45.76        31.04        29.10        13.84 
TCGA-EY-A547 TCGA-EY-A548 TCGA-EY-A54A TCGA-EY-A5W2 TCGA-EY-A72D TCGA-FI-A2CX 
       17.92         2.14         3.72         5.29         5.88        40.01 
TCGA-FI-A2D0 TCGA-FI-A2D4 TCGA-FI-A2D5 TCGA-FI-A2D6 TCGA-PG-A6IB TCGA-PG-A917 
       33.99         7.99        13.84         8.98         9.11         6.97 
TCGA-QF-A5YS 
       18.84 

subtype1 subtype2 subtype3 subtype4 
    0.13     0.69     0.03     0.10 
subtype1 subtype2 subtype3 subtype4 
  116.25   185.79   149.56   191.84 
subtype1 subtype2 subtype3 subtype4 
  23.700   29.015   20.280   20.190 
[1] "0.1 - 116.2 (23.7)" "0.7 - 185.8 (29.0)" "0.0 - 149.6 (20.3)"
[4] "0.1 - 191.8 (20.2)"
D10V2, continuous
          vv
clus       ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA
  subtype1                                     136
  subtype2                                      58
  subtype3                                      21
  subtype4                                     168
          vv
clus       MIXED SEROUS AND ENDOMETRIOID SEROUS ENDOMETRIAL ADENOCARCINOMA
  subtype1                             1                                 3
  subtype2                             0                                 0
  subtype3                            10                                81
  subtype4                            10                                16
D10V3, multiclass
                                         clus
vv                                        subtype1 subtype2 subtype3 subtype4
  ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA      136       58       21      168
  MIXED SEROUS AND ENDOMETRIOID                  1        0       10       10
  SEROUS ENDOMETRIAL ADENOCARCINOMA              3        0       81       16
[1] 3 4
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V4, binary
          cls
clus         0   1
  subtype1  37 103
  subtype2  12  46
  subtype3  24  88
  subtype4  61 133
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   37  103
  subtype2   12   46
  subtype3   24   88
  subtype4   61  133
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        37       12       24       61
  YES      103       46       88      133
[1] 2 4
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus        R0  R1  R2  RX
  subtype1 100   3   3  10
  subtype2  38   4   1   5
  subtype3  74   6   7   9
  subtype4 137   9   5   6
D10V5, multiclass
    clus
vv   subtype1 subtype2 subtype3 subtype4
  R0      100       38       74      137
  R1        3        4        6        9
  R2        3        1        7        5
  RX       10        5        9        6
[1] 4 4
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       AMERICAN INDIAN OR ALASKA NATIVE ASIAN BLACK OR AFRICAN AMERICAN
  subtype1                                0     6                        19
  subtype2                                1     3                         7
  subtype3                                1     3                        32
  subtype4                                2     7                        33
          vv
clus       NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER WHITE
  subtype1                                         2   110
  subtype2                                         2    43
  subtype3                                         1    68
  subtype4                                         4   134
D10V6, multiclass
                                           clus
vv                                          subtype1 subtype2 subtype3 subtype4
  AMERICAN INDIAN OR ALASKA NATIVE                 0        1        1        2
  ASIAN                                            6        3        3        7
  BLACK OR AFRICAN AMERICAN                       19        7       32       33
  NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER        2        2        1        4
  WHITE                                          110       43       68      134
[1] 5 4
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V7, binary
          cls
clus         0   1
  subtype1   3 101
  subtype2   1  38
  subtype3   4  78
  subtype4   5 135
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3  101
  subtype2    1   38
  subtype3    4   78
  subtype4    5  135
                        clus
vv                       subtype1 subtype2 subtype3 subtype4
  HISPANIC OR LATINO            3        1        4        5
  NOT HISPANIC OR LATINO      101       38       78      135
[1] 2 4
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = MIRSEQ_MATURE_CNMF
D11V1, survival
          sevent
clus2        0   1
  subtype1 125  23
  subtype2  73  12
  subtype3 125   8
subtype1 subtype2 subtype3 
     148       85      133 
subtype1 subtype2 subtype3 
      23       12        8 
$subtype1
TCGA-A5-A0G1 TCGA-A5-A0GB TCGA-A5-A1OF TCGA-A5-A1OG TCGA-A5-A2K2 TCGA-A5-A2K3 
      106.88        32.78         7.92        11.44        91.04        46.32 
TCGA-A5-A2K4 TCGA-A5-A2K5 TCGA-A5-A2K7 TCGA-A5-A3LP TCGA-AJ-A23M TCGA-AJ-A23N 
       28.64         5.33         5.16        14.96         1.18         1.08 
TCGA-AJ-A2QM TCGA-AJ-A2QO TCGA-AJ-A3BD TCGA-AJ-A3BF TCGA-AJ-A3BG TCGA-AJ-A3BK 
        0.85         3.02         0.49         1.12         0.76         1.68 
TCGA-AJ-A3EK TCGA-AJ-A3EM TCGA-AJ-A3IA TCGA-AJ-A3NC TCGA-AJ-A3NE TCGA-AJ-A3NH 
       14.66        22.26         0.92        36.99        20.65         0.76 
TCGA-AJ-A3OL TCGA-AJ-A3TW TCGA-AJ-A5DW TCGA-AJ-A8CW TCGA-AP-A0LF TCGA-AP-A1E4 
        1.87         1.71         2.33         0.13         3.39        16.24 
TCGA-AP-A3K1 TCGA-AW-A1PO TCGA-AX-A064 TCGA-AX-A1CI TCGA-AX-A2H2 TCGA-AX-A2H4 
       18.25         0.56        34.98        72.56         4.77        30.12 
TCGA-AX-A2H5 TCGA-AX-A2H7 TCGA-AX-A2H8 TCGA-AX-A2HA TCGA-AX-A2HC TCGA-AX-A2HD 
       71.24        33.53        61.18        68.71        33.40        40.50 
TCGA-AX-A2HF TCGA-AX-A2HG TCGA-AX-A2HH TCGA-AX-A3FS TCGA-AX-A3FT TCGA-AX-A3FW 
       19.36        26.33        17.75         0.23         0.10         0.33 
TCGA-AX-A3FZ TCGA-AX-A3G1 TCGA-AX-A3G3 TCGA-AX-A3G8 TCGA-AX-A3G9 TCGA-AX-A3GI 
        0.20        20.52         0.03         1.18         8.35         0.13 
TCGA-B5-A0JR TCGA-B5-A0K8 TCGA-B5-A11H TCGA-B5-A11J TCGA-B5-A1MR TCGA-B5-A1MS 
       56.91        17.85        88.34        54.44       191.84       102.31 
TCGA-B5-A1MW TCGA-B5-A3FA TCGA-B5-A3FB TCGA-B5-A3FC TCGA-B5-A3FD TCGA-B5-A3S1 
       14.70        96.30        78.81        62.14        33.11         5.03 
TCGA-B5-A5OD TCGA-B5-A5OE TCGA-BG-A0YV TCGA-BG-A221 TCGA-BG-A2AD TCGA-BG-A2AE 
       34.13        34.95        12.56         1.81        35.67        23.70 
TCGA-BG-A2L7 TCGA-BG-A3EW TCGA-BG-A3PP TCGA-BK-A0CC TCGA-BK-A13B TCGA-BK-A4ZD 
       20.12        11.31         6.81        10.22        31.76        16.64 
TCGA-BK-A6W3 TCGA-D1-A15V TCGA-D1-A15X TCGA-D1-A167 TCGA-D1-A16I TCGA-D1-A16S 
       10.03        39.48        29.88        15.72        11.51        18.67 
TCGA-D1-A16Y TCGA-D1-A1NU TCGA-D1-A2G0 TCGA-D1-A3DA TCGA-D1-A3DG TCGA-D1-A3DH 
       17.49        13.22         3.52         0.26         4.27         4.11 
TCGA-DI-A1NN TCGA-DI-A1NO TCGA-DI-A2QT TCGA-DI-A2QY TCGA-E6-A1LZ TCGA-E6-A8L9 
       35.38         9.37        12.39        91.96        48.36        24.33 
TCGA-EO-A1Y5 TCGA-EO-A1Y8 TCGA-EO-A22S TCGA-EO-A22U TCGA-EO-A2CH TCGA-EO-A3AU 
       10.92        37.71        35.05        27.12        19.40        19.36 
TCGA-EO-A3AV TCGA-EO-A3AY TCGA-EO-A3B1 TCGA-EO-A3KU TCGA-EO-A3KW TCGA-EY-A1G7 
       35.15        12.89        26.96        22.26        16.34         6.21 
TCGA-EY-A1G8 TCGA-EY-A1GC TCGA-EY-A1GJ TCGA-EY-A1GO TCGA-EY-A1GR TCGA-EY-A1GS 
       14.99         4.54        23.90        19.27        17.62        15.09 
TCGA-EY-A1GV TCGA-EY-A212 TCGA-EY-A2OM TCGA-EY-A2ON TCGA-EY-A2OO TCGA-EY-A2OP 
       15.81         3.62        22.82        13.45        45.76        31.04 
TCGA-EY-A3L3 TCGA-EY-A3QX TCGA-EY-A4KR TCGA-EY-A547 TCGA-EY-A54A TCGA-EY-A5W2 
       27.35        13.84         6.44        17.92         3.72         5.29 
TCGA-EY-A72D TCGA-FI-A2CX TCGA-FI-A2CY TCGA-FI-A2D0 TCGA-FI-A2D2 TCGA-FI-A2D4 
        5.88        40.01        34.98        33.99        36.00         7.99 
TCGA-FI-A2D5 TCGA-FI-A2D6 TCGA-FI-A2EU TCGA-FI-A2EW TCGA-FI-A2EX TCGA-FI-A2EY 
       13.84         8.98        96.69        59.01         9.07        28.93 
TCGA-FI-A3PV TCGA-FI-A3PX TCGA-H5-A2HR TCGA-K6-A3WQ TCGA-KJ-A3U4 TCGA-PG-A6IB 
       41.06        45.01         1.74        13.15         2.43         9.11 
TCGA-PG-A914 TCGA-PG-A915 TCGA-PG-A917 TCGA-QF-A5YS 
       12.92         7.00         6.97        18.84 

$subtype2
TCGA-5S-A9Q8 TCGA-A5-A0GG TCGA-A5-A0GN TCGA-A5-A0GR TCGA-A5-A1OH TCGA-A5-A1OK 
        1.08        87.32        60.53        36.82        36.33         8.02 
TCGA-A5-A3LO TCGA-AJ-A23O TCGA-AJ-A2QK TCGA-AJ-A2QN TCGA-AJ-A3EJ TCGA-AJ-A3EL 
        7.33         1.97         0.39         2.40         1.64        22.49 
TCGA-AJ-A3NF TCGA-AJ-A3NG TCGA-AJ-A3OJ TCGA-AJ-A3OK TCGA-AJ-A3QS TCGA-AJ-A6NU 
        1.35        15.62         1.94        15.95        16.87         0.99 
TCGA-AJ-A8CT TCGA-AP-A059 TCGA-AP-A05O TCGA-AP-A0LM TCGA-AP-A1DQ TCGA-AP-A1E0 
        2.70         8.22        12.20        27.12        41.95        30.90 
TCGA-AP-A1E3 TCGA-AX-A06H TCGA-AX-A0IZ TCGA-AX-A1C8 TCGA-AX-A1CC TCGA-AX-A1CN 
       27.85        27.39        43.82        13.55        12.43        25.12 
TCGA-AX-A2HJ TCGA-AX-A2HK TCGA-AX-A2IN TCGA-AX-A2IO TCGA-AX-A3G4 TCGA-AX-A3GB 
       27.32         2.96        31.13        38.70         0.13        14.47 
TCGA-B5-A11L TCGA-B5-A11O TCGA-B5-A11U TCGA-B5-A1MU TCGA-B5-A1MY TCGA-B5-A1N2 
       45.90        40.50        16.73        50.89        11.87        12.79 
TCGA-B5-A5OC TCGA-BG-A0MA TCGA-BG-A18A TCGA-BK-A26L TCGA-BK-A6W4 TCGA-BS-A0V7 
       41.06        10.72        14.01        24.13         9.86        63.58 
TCGA-BS-A0V8 TCGA-BS-A0VI TCGA-D1-A0ZQ TCGA-D1-A0ZS TCGA-D1-A168 TCGA-D1-A17C 
       49.55        63.16         8.55         4.87        36.10         0.99 
TCGA-D1-A1NW TCGA-D1-A1NY TCGA-D1-A1O8 TCGA-D1-A2G6 TCGA-D1-A2G7 TCGA-DF-A2KZ 
        0.72        16.87         3.95         8.48        44.88        27.16 
TCGA-DI-A0WH TCGA-DI-A1BU TCGA-DI-A1C3 TCGA-DI-A2QU TCGA-E6-A2P8 TCGA-EO-A22R 
       16.31        39.29        24.30        31.10         2.37        31.96 
TCGA-EO-A22T TCGA-EO-A22X TCGA-EO-A22Y TCGA-EO-A2CG TCGA-EO-A3AS TCGA-EO-A3AZ 
       33.01        57.60        24.79        32.38        34.39        27.16 
TCGA-EY-A1GD TCGA-EY-A1GM TCGA-EY-A1GP TCGA-EY-A1GQ TCGA-EY-A1GT TCGA-EY-A210 
        8.15         6.90        18.84        17.88        16.11        12.59 
TCGA-EY-A2OQ TCGA-FI-A2F8 TCGA-FI-A2F9 TCGA-PG-A5BC TCGA-PG-A7D5 TCGA-QF-A5YT 
       29.10        25.02        26.01        10.82        23.97        39.95 
TCGA-QS-A5YR 
        5.52 

$subtype3
TCGA-A5-A0GQ TCGA-A5-A1OJ TCGA-AJ-A2QL TCGA-AJ-A3BI TCGA-AJ-A3I9 TCGA-AP-A0LS 
       38.37         9.60        19.79         2.24         1.28        63.06 
TCGA-AP-A1DH TCGA-AP-A1DK TCGA-AP-A1DM TCGA-AP-A1DO TCGA-AP-A1DP TCGA-AP-A1DR 
       71.67        60.36        55.89        31.30        35.54        49.15 
TCGA-AP-A1DV TCGA-AP-A1E1 TCGA-AP-A5FX TCGA-AX-A06L TCGA-AX-A1C4 TCGA-AX-A1C5 
        6.71        10.42        33.73        60.66        13.28        19.20 
TCGA-AX-A1C9 TCGA-AX-A1CA TCGA-AX-A1CE TCGA-AX-A1CF TCGA-AX-A1CJ TCGA-AX-A1CK 
       15.25        20.28        20.05        76.83        54.12        67.50 
TCGA-AX-A1CP TCGA-AX-A1CR TCGA-AX-A3FX TCGA-B5-A0JT TCGA-B5-A0JU TCGA-B5-A0JX 
       36.39        11.08         0.13        43.13        48.76        44.71 
TCGA-B5-A0KB TCGA-B5-A11G TCGA-B5-A11M TCGA-B5-A11N TCGA-B5-A11P TCGA-B5-A11Q 
        4.11       113.36        44.78        43.96        36.82        32.09 
TCGA-B5-A11R TCGA-B5-A11S TCGA-B5-A11W TCGA-B5-A11Z TCGA-B5-A121 TCGA-B5-A1MV 
       33.50        27.35        19.50        17.36        16.57        14.40 
TCGA-B5-A1MX TCGA-B5-A1MZ TCGA-B5-A3F9 TCGA-BG-A0MH TCGA-BG-A0MK TCGA-BG-A0VV 
       11.70        15.29       116.25        63.45        43.30        26.66 
TCGA-BG-A0VW TCGA-BG-A0VX TCGA-BG-A186 TCGA-BG-A187 TCGA-BG-A18B TCGA-BG-A18C 
       16.34        34.29        13.78        14.73        15.45        15.45 
TCGA-BG-A222 TCGA-BK-A0CA TCGA-BK-A139 TCGA-BK-A13C TCGA-BK-A56F TCGA-BS-A0T9 
        9.57        34.98        10.16        24.99        13.18        46.95 
TCGA-BS-A0UA TCGA-BS-A0V4 TCGA-BS-A0V6 TCGA-D1-A0ZN TCGA-D1-A0ZO TCGA-D1-A102 
       88.34        59.51        62.79        16.83        19.79         4.44 
TCGA-D1-A15W TCGA-D1-A160 TCGA-D1-A161 TCGA-D1-A162 TCGA-D1-A163 TCGA-D1-A165 
       30.08         3.68        29.33        37.64        32.58         0.66 
TCGA-D1-A169 TCGA-D1-A16B TCGA-D1-A16D TCGA-D1-A16E TCGA-D1-A16F TCGA-D1-A16G 
       37.32        36.36        37.51        36.79         2.63        27.42 
TCGA-D1-A16J TCGA-D1-A16N TCGA-D1-A16O TCGA-D1-A16Q TCGA-D1-A16R TCGA-D1-A16V 
       29.92        31.07        33.63        10.65         0.69         1.41 
TCGA-D1-A16X TCGA-D1-A174 TCGA-D1-A175 TCGA-D1-A176 TCGA-D1-A177 TCGA-D1-A179 
        3.65        19.53         6.64        30.15        18.02         6.77 
TCGA-D1-A17A TCGA-D1-A17B TCGA-D1-A17D TCGA-D1-A17F TCGA-D1-A17H TCGA-D1-A17K 
        1.58         7.00        30.44         1.28        28.01        28.08 
TCGA-D1-A17L TCGA-D1-A17M TCGA-D1-A17N TCGA-D1-A17Q TCGA-D1-A17R TCGA-D1-A17S 
       26.37        10.22         1.51         1.78        11.15        24.30 
TCGA-D1-A17T TCGA-D1-A17U TCGA-D1-A1NS TCGA-D1-A1NX TCGA-D1-A1NZ TCGA-D1-A1O0 
        2.33        22.92         1.41        18.25        18.02         2.07 
TCGA-D1-A1O5 TCGA-D1-A1O7 TCGA-D1-A2G5 TCGA-DI-A1BY TCGA-E6-A1LX TCGA-E6-A1M0 
       15.06         1.05        41.42        36.62        23.38        17.06 
TCGA-E6-A2P9 TCGA-EC-A1NJ TCGA-EC-A1QX TCGA-EC-A24G TCGA-EO-A1Y7 TCGA-EY-A1GE 
        6.67        16.01         7.36        16.80        18.81        24.36 
TCGA-EY-A1GF TCGA-EY-A1GH TCGA-EY-A1GI TCGA-EY-A1GK TCGA-EY-A1GL TCGA-EY-A1GU 
       27.16        23.34        23.34        22.78        13.97        12.43 
TCGA-EY-A1GW TCGA-EY-A1H0 TCGA-EY-A214 TCGA-EY-A215 TCGA-FI-A2F4 TCGA-PG-A916 
        8.55        19.33        14.40        18.87        28.96        11.24 
TCGA-QS-A5YQ 
        4.21 

subtype1 subtype2 subtype3 
    0.03     0.13     0.13 
subtype1 subtype2 subtype3 
  191.84    87.32   116.25 
subtype1 subtype2 subtype3 
   16.29    17.88    19.79 
[1] "0.0 - 191.8 (16.3)" "0.1 - 87.3 (17.9)"  "0.1 - 116.2 (19.8)"
D11V2, continuous
          vv
clus       ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA
  subtype1                                      79
  subtype2                                      59
  subtype3                                     125
          vv
clus       MIXED SEROUS AND ENDOMETRIOID SEROUS ENDOMETRIAL ADENOCARCINOMA
  subtype1                             8                                63
  subtype2                             8                                18
  subtype3                             3                                 5
D11V3, multiclass
                                         clus
vv                                        subtype1 subtype2 subtype3
  ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA       79       59      125
  MIXED SEROUS AND ENDOMETRIOID                  8        8        3
  SEROUS ENDOMETRIAL ADENOCARCINOMA             63       18        5
[1] 3 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V4, binary
          cls
clus         0   1
  subtype1  25 125
  subtype2  18  67
  subtype3  42  91
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25  125
  subtype2   18   67
  subtype3   42   91
     clus
vv    subtype1 subtype2 subtype3
  NO        25       18       42
  YES      125       67       91
[1] 2 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       R0 R1 R2 RX
  subtype1 95  6  8  8
  subtype2 65  4  1  5
  subtype3 89  6  4 11
D11V5, multiclass
    clus
vv   subtype1 subtype2 subtype3
  R0       95       65       89
  R1        6        4        6
  R2        8        1        4
  RX        8        5       11
[1] 4 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       AMERICAN INDIAN OR ALASKA NATIVE ASIAN BLACK OR AFRICAN AMERICAN
  subtype1                                1     1                        37
  subtype2                                1     3                        21
  subtype3                                0     2                        19
          vv
clus       NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER WHITE
  subtype1                                         0    97
  subtype2                                         4    50
  subtype3                                         1   109
D11V6, multiclass
                                           clus
vv                                          subtype1 subtype2 subtype3
  AMERICAN INDIAN OR ALASKA NATIVE                 1        1        0
  ASIAN                                            1        3        2
  BLACK OR AFRICAN AMERICAN                       37       21       19
  NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER        0        4        1
  WHITE                                           97       50      109
[1] 5 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V7, binary
          cls
clus         0   1
  subtype1   7 106
  subtype2   1  57
  subtype3   2 100
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7  106
  subtype2    1   57
  subtype3    2  100
                        clus
vv                       subtype1 subtype2 subtype3
  HISPANIC OR LATINO            7        1        2
  NOT HISPANIC OR LATINO      106       57      100
[1] 2 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D12V1, survival
          sevent
clus2        0   1
  subtype1 108  20
  subtype2 103   6
  subtype3 112  17
subtype1 subtype2 subtype3 
     128      109      129 
subtype1 subtype2 subtype3 
      20        6       17 
$subtype1
TCGA-A5-A0G1 TCGA-A5-A1OF TCGA-A5-A1OG TCGA-A5-A2K2 TCGA-A5-A2K3 TCGA-A5-A2K4 
      106.88         7.92        11.44        91.04        46.32        28.64 
TCGA-A5-A2K5 TCGA-A5-A3LP TCGA-AJ-A23M TCGA-AJ-A2QM TCGA-AJ-A3BD TCGA-AJ-A3BF 
        5.33        14.96         1.18         0.85         0.49         1.12 
TCGA-AJ-A3BG TCGA-AJ-A3EJ TCGA-AJ-A3NH TCGA-AJ-A3OL TCGA-AJ-A3TW TCGA-AJ-A8CW 
        0.76         1.64         0.76         1.87         1.71         0.13 
TCGA-AP-A059 TCGA-AP-A0LF TCGA-AP-A0LS TCGA-AP-A1DO TCGA-AP-A1DV TCGA-AP-A1E1 
        8.22         3.39        63.06        31.30         6.71        10.42 
TCGA-AP-A3K1 TCGA-AW-A1PO TCGA-AX-A1C5 TCGA-AX-A1CA TCGA-AX-A1CE TCGA-AX-A1CF 
       18.25         0.56        19.20        20.28        20.05        76.83 
TCGA-AX-A1CK TCGA-AX-A1CR TCGA-AX-A2H2 TCGA-AX-A2H4 TCGA-AX-A2H5 TCGA-AX-A2H8 
       67.50        11.08         4.77        30.12        71.24        61.18 
TCGA-AX-A2HD TCGA-AX-A2HG TCGA-AX-A2HH TCGA-AX-A3FT TCGA-AX-A3G3 TCGA-AX-A3G8 
       40.50        26.33        17.75         0.10         0.03         1.18 
TCGA-AX-A3GI TCGA-B5-A0JU TCGA-B5-A0K8 TCGA-B5-A11G TCGA-B5-A11H TCGA-B5-A11P 
        0.13        48.76        17.85       113.36        88.34        36.82 
TCGA-B5-A11Q TCGA-B5-A1MR TCGA-B5-A1MS TCGA-B5-A1MW TCGA-B5-A3FA TCGA-B5-A3S1 
       32.09       191.84       102.31        14.70        96.30         5.03 
TCGA-B5-A5OD TCGA-B5-A5OE TCGA-BG-A0YV TCGA-BG-A18C TCGA-BG-A221 TCGA-BG-A222 
       34.13        34.95        12.56        15.45         1.81         9.57 
TCGA-BG-A2AE TCGA-BG-A2L7 TCGA-BG-A3EW TCGA-BK-A139 TCGA-D1-A15V TCGA-D1-A15X 
       23.70        20.12        11.31        10.16        39.48        29.88 
TCGA-D1-A160 TCGA-D1-A167 TCGA-D1-A16I TCGA-D1-A16N TCGA-D1-A16S TCGA-D1-A16V 
        3.68        15.72        11.51        31.07        18.67         1.41 
TCGA-D1-A16Y TCGA-D1-A176 TCGA-D1-A179 TCGA-D1-A17K TCGA-D1-A17L TCGA-D1-A1NU 
       17.49        30.15         6.77        28.08        26.37        13.22 
TCGA-D1-A1NW TCGA-D1-A2G0 TCGA-D1-A3DA TCGA-D1-A3DH TCGA-DI-A1NN TCGA-DI-A1NO 
        0.72         3.52         0.26         4.11        35.38         9.37 
TCGA-DI-A2QT TCGA-E6-A1LZ TCGA-E6-A8L9 TCGA-EO-A1Y5 TCGA-EO-A1Y8 TCGA-EO-A22U 
       12.39        48.36        24.33        10.92        37.71        27.12 
TCGA-EO-A2CH TCGA-EO-A3AV TCGA-EO-A3B1 TCGA-EO-A3KW TCGA-EY-A1G7 TCGA-EY-A1G8 
       19.40        35.15        26.96        16.34         6.21        14.99 
TCGA-EY-A1GC TCGA-EY-A1GJ TCGA-EY-A1GR TCGA-EY-A1GS TCGA-EY-A1GU TCGA-EY-A1GV 
        4.54        23.90        17.62        15.09        12.43        15.81 
TCGA-EY-A212 TCGA-EY-A214 TCGA-EY-A215 TCGA-EY-A2OM TCGA-EY-A2ON TCGA-EY-A2OO 
        3.62        14.40        18.87        22.82        13.45        45.76 
TCGA-EY-A2OP TCGA-EY-A3L3 TCGA-EY-A4KR TCGA-EY-A547 TCGA-FI-A2CX TCGA-FI-A2CY 
       31.04        27.35         6.44        17.92        40.01        34.98 
TCGA-FI-A2D2 TCGA-FI-A2EU TCGA-FI-A2EW TCGA-FI-A2EX TCGA-FI-A2EY TCGA-FI-A2F4 
       36.00        96.69        59.01         9.07        28.93        28.96 
TCGA-FI-A3PX TCGA-H5-A2HR TCGA-K6-A3WQ TCGA-KJ-A3U4 TCGA-PG-A914 TCGA-PG-A915 
       45.01         1.74        13.15         2.43        12.92         7.00 
TCGA-PG-A917 TCGA-QF-A5YS 
        6.97        18.84 

$subtype2
TCGA-5S-A9Q8 TCGA-A5-A0GG TCGA-A5-A0GQ TCGA-A5-A1OJ TCGA-A5-A1OK TCGA-AJ-A2QK 
        1.08        87.32        38.37         9.60         8.02         0.39 
TCGA-AJ-A2QL TCGA-AJ-A2QO TCGA-AJ-A3BI TCGA-AJ-A3BK TCGA-AJ-A3I9 TCGA-AJ-A3NC 
       19.79         3.02         2.24         1.68         1.28        36.99 
TCGA-AJ-A3OK TCGA-AJ-A8CT TCGA-AP-A05O TCGA-AP-A1DP TCGA-AP-A5FX TCGA-AX-A06H 
       15.95         2.70        12.20        35.54        33.73        27.39 
TCGA-AX-A06L TCGA-AX-A1C4 TCGA-AX-A1C9 TCGA-AX-A1CJ TCGA-AX-A2H7 TCGA-AX-A2HJ 
       60.66        13.28        15.25        54.12        33.53        27.32 
TCGA-AX-A3FW TCGA-AX-A3FX TCGA-AX-A3G1 TCGA-AX-A3GB TCGA-B5-A0JT TCGA-B5-A0JX 
        0.33         0.13        20.52        14.47        43.13        44.71 
TCGA-B5-A0KB TCGA-B5-A11J TCGA-B5-A11M TCGA-B5-A11O TCGA-B5-A11R TCGA-B5-A11S 
        4.11        54.44        44.78        40.50        33.50        27.35 
TCGA-B5-A11W TCGA-B5-A11Z TCGA-B5-A121 TCGA-B5-A1MV TCGA-B5-A1MZ TCGA-B5-A3F9 
       19.50        17.36        16.57        14.40        15.29       116.25 
TCGA-B5-A3FB TCGA-B5-A3FD TCGA-BG-A0MA TCGA-BG-A0MH TCGA-BG-A0MK TCGA-BG-A0VV 
       78.81        33.11        10.72        63.45        43.30        26.66 
TCGA-BG-A0VW TCGA-BG-A0VX TCGA-BG-A186 TCGA-BG-A187 TCGA-BG-A18A TCGA-BG-A18B 
       16.34        34.29        13.78        14.73        14.01        15.45 
TCGA-BK-A0CA TCGA-BK-A13B TCGA-BK-A13C TCGA-BK-A56F TCGA-BS-A0UA TCGA-BS-A0V6 
       34.98        31.76        24.99        13.18        88.34        62.79 
TCGA-BS-A0V7 TCGA-D1-A0ZO TCGA-D1-A0ZQ TCGA-D1-A102 TCGA-D1-A15W TCGA-D1-A161 
       63.58        19.79         8.55         4.44        30.08        29.33 
TCGA-D1-A162 TCGA-D1-A165 TCGA-D1-A169 TCGA-D1-A16B TCGA-D1-A16D TCGA-D1-A16E 
       37.64         0.66        37.32        36.36        37.51        36.79 
TCGA-D1-A16F TCGA-D1-A16O TCGA-D1-A16Q TCGA-D1-A16R TCGA-D1-A16X TCGA-D1-A175 
        2.63        33.63        10.65         0.69         3.65         6.64 
TCGA-D1-A17A TCGA-D1-A17B TCGA-D1-A17D TCGA-D1-A17F TCGA-D1-A17N TCGA-D1-A17S 
        1.58         7.00        30.44         1.28         1.51        24.30 
TCGA-D1-A17T TCGA-D1-A17U TCGA-D1-A1NS TCGA-D1-A1NX TCGA-D1-A1NZ TCGA-D1-A1O0 
        2.33        22.92         1.41        18.25        18.02         2.07 
TCGA-D1-A1O5 TCGA-D1-A1O7 TCGA-D1-A2G5 TCGA-DI-A1BY TCGA-DI-A1C3 TCGA-E6-A2P9 
       15.06         1.05        41.42        36.62        24.30         6.67 
TCGA-EC-A1NJ TCGA-EC-A24G TCGA-EO-A1Y7 TCGA-EO-A22Y TCGA-EY-A1GE TCGA-EY-A1GF 
       16.01        16.80        18.81        24.79        24.36        27.16 
TCGA-EY-A1GH TCGA-EY-A1GK TCGA-EY-A1GW TCGA-EY-A1H0 TCGA-PG-A916 TCGA-QS-A5YQ 
       23.34        22.78         8.55        19.33        11.24         4.21 
TCGA-QS-A5YR 
        5.52 

$subtype3
TCGA-A5-A0GB TCGA-A5-A0GN TCGA-A5-A0GR TCGA-A5-A1OH TCGA-A5-A2K7 TCGA-A5-A3LO 
       32.78        60.53        36.82        36.33         5.16         7.33 
TCGA-AJ-A23N TCGA-AJ-A23O TCGA-AJ-A2QN TCGA-AJ-A3EK TCGA-AJ-A3EL TCGA-AJ-A3EM 
        1.08         1.97         2.40        14.66        22.49        22.26 
TCGA-AJ-A3IA TCGA-AJ-A3NE TCGA-AJ-A3NF TCGA-AJ-A3NG TCGA-AJ-A3OJ TCGA-AJ-A3QS 
        0.92        20.65         1.35        15.62         1.94        16.87 
TCGA-AJ-A5DW TCGA-AJ-A6NU TCGA-AP-A0LM TCGA-AP-A1DH TCGA-AP-A1DK TCGA-AP-A1DM 
        2.33         0.99        27.12        71.67        60.36        55.89 
TCGA-AP-A1DQ TCGA-AP-A1DR TCGA-AP-A1E0 TCGA-AP-A1E3 TCGA-AP-A1E4 TCGA-AX-A064 
       41.95        49.15        30.90        27.85        16.24        34.98 
TCGA-AX-A0IZ TCGA-AX-A1C8 TCGA-AX-A1CC TCGA-AX-A1CI TCGA-AX-A1CN TCGA-AX-A1CP 
       43.82        13.55        12.43        72.56        25.12        36.39 
TCGA-AX-A2HA TCGA-AX-A2HC TCGA-AX-A2HF TCGA-AX-A2HK TCGA-AX-A2IN TCGA-AX-A2IO 
       68.71        33.40        19.36         2.96        31.13        38.70 
TCGA-AX-A3FS TCGA-AX-A3FZ TCGA-AX-A3G4 TCGA-AX-A3G9 TCGA-B5-A0JR TCGA-B5-A11L 
        0.23         0.20         0.13         8.35        56.91        45.90 
TCGA-B5-A11N TCGA-B5-A11U TCGA-B5-A1MU TCGA-B5-A1MX TCGA-B5-A1MY TCGA-B5-A1N2 
       43.96        16.73        50.89        11.70        11.87        12.79 
TCGA-B5-A3FC TCGA-B5-A5OC TCGA-BG-A2AD TCGA-BG-A3PP TCGA-BK-A0CC TCGA-BK-A26L 
       62.14        41.06        35.67         6.81        10.22        24.13 
TCGA-BK-A4ZD TCGA-BK-A6W3 TCGA-BK-A6W4 TCGA-BS-A0T9 TCGA-BS-A0V4 TCGA-BS-A0V8 
       16.64        10.03         9.86        46.95        59.51        49.55 
TCGA-BS-A0VI TCGA-D1-A0ZN TCGA-D1-A0ZS TCGA-D1-A163 TCGA-D1-A168 TCGA-D1-A16G 
       63.16        16.83         4.87        32.58        36.10        27.42 
TCGA-D1-A16J TCGA-D1-A174 TCGA-D1-A177 TCGA-D1-A17C TCGA-D1-A17H TCGA-D1-A17M 
       29.92        19.53        18.02         0.99        28.01        10.22 
TCGA-D1-A17Q TCGA-D1-A17R TCGA-D1-A1NY TCGA-D1-A1O8 TCGA-D1-A2G6 TCGA-D1-A2G7 
        1.78        11.15        16.87         3.95         8.48        44.88 
TCGA-D1-A3DG TCGA-DF-A2KZ TCGA-DI-A0WH TCGA-DI-A1BU TCGA-DI-A2QU TCGA-DI-A2QY 
        4.27        27.16        16.31        39.29        31.10        91.96 
TCGA-E6-A1LX TCGA-E6-A1M0 TCGA-E6-A2P8 TCGA-EC-A1QX TCGA-EO-A22R TCGA-EO-A22S 
       23.38        17.06         2.37         7.36        31.96        35.05 
TCGA-EO-A22T TCGA-EO-A22X TCGA-EO-A2CG TCGA-EO-A3AS TCGA-EO-A3AU TCGA-EO-A3AY 
       33.01        57.60        32.38        34.39        19.36        12.89 
TCGA-EO-A3AZ TCGA-EO-A3KU TCGA-EY-A1GD TCGA-EY-A1GI TCGA-EY-A1GL TCGA-EY-A1GM 
       27.16        22.26         8.15        23.34        13.97         6.90 
TCGA-EY-A1GO TCGA-EY-A1GP TCGA-EY-A1GQ TCGA-EY-A1GT TCGA-EY-A210 TCGA-EY-A2OQ 
       19.27        18.84        17.88        16.11        12.59        29.10 
TCGA-EY-A3QX TCGA-EY-A54A TCGA-EY-A5W2 TCGA-EY-A72D TCGA-FI-A2D0 TCGA-FI-A2D4 
       13.84         3.72         5.29         5.88        33.99         7.99 
TCGA-FI-A2D5 TCGA-FI-A2D6 TCGA-FI-A2F8 TCGA-FI-A2F9 TCGA-FI-A3PV TCGA-PG-A5BC 
       13.84         8.98        25.02        26.01        41.06        10.82 
TCGA-PG-A6IB TCGA-PG-A7D5 TCGA-QF-A5YT 
        9.11        23.97        39.95 

subtype1 subtype2 subtype3 
    0.03     0.13     0.13 
subtype1 subtype2 subtype3 
  191.84   116.25    91.96 
subtype1 subtype2 subtype3 
  16.915   18.810   19.360 
[1] "0.0 - 191.8 (16.9)" "0.1 - 116.2 (18.8)" "0.1 - 92.0 (19.4)" 
D12V2, continuous
          vv
clus       ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA
  subtype1                                      64
  subtype2                                     105
  subtype3                                      94
          vv
clus       MIXED SEROUS AND ENDOMETRIOID SEROUS ENDOMETRIAL ADENOCARCINOMA
  subtype1                            11                                55
  subtype2                             2                                 2
  subtype3                             6                                29
D12V3, multiclass
                                         clus
vv                                        subtype1 subtype2 subtype3
  ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA       64      105       94
  MIXED SEROUS AND ENDOMETRIOID                 11        2        6
  SEROUS ENDOMETRIAL ADENOCARCINOMA             55        2       29
[1] 3 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V4, binary
          cls
clus         0   1
  subtype1  27 103
  subtype2  23  86
  subtype3  35  94
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   27  103
  subtype2   23   86
  subtype3   35   94
     clus
vv    subtype1 subtype2 subtype3
  NO        27       23       35
  YES      103       86       94
[1] 2 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       R0 R1 R2 RX
  subtype1 85  7  8  7
  subtype2 70  4  1 11
  subtype3 94  5  4  6
D12V5, multiclass
    clus
vv   subtype1 subtype2 subtype3
  R0       85       70       94
  R1        7        4        5
  R2        8        1        4
  RX        7       11        6
[1] 4 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
          vv
clus       AMERICAN INDIAN OR ALASKA NATIVE ASIAN BLACK OR AFRICAN AMERICAN
  subtype1                                1     1                        28
  subtype2                                1     3                        20
  subtype3                                0     2                        29
          vv
clus       NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER WHITE
  subtype1                                         0    91
  subtype2                                         1    81
  subtype3                                         4    84
D12V6, multiclass
                                           clus
vv                                          subtype1 subtype2 subtype3
  AMERICAN INDIAN OR ALASKA NATIVE                 1        1        0
  ASIAN                                            1        3        2
  BLACK OR AFRICAN AMERICAN                       28       20       29
  NATIVE HAWAIIAN OR OTHER PACIFIC ISLANDER        0        1        4
  WHITE                                           91       81       84
[1] 5 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V7, binary
          cls
clus        0  1
  subtype1  5 98
  subtype2  2 80
  subtype3  3 85
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   98
  subtype2    2   80
  subtype3    3   85
                        clus
vv                       subtype1 subtype2 subtype3
  HISPANIC OR LATINO            5        2        3
  NOT HISPANIC OR LATINO       98       80       85
[1] 2 3
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
