This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 80 arm-level events and 12 molecular subtypes across 539 patients, 414 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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1q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
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2p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3p gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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3q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4p gain cnv correlated to 'CN_CNMF'.
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5p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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6q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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7p gain cnv correlated to 'CN_CNMF'.
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7q gain cnv correlated to 'CN_CNMF'.
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8p gain cnv correlated to 'CN_CNMF'.
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8q gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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9p gain cnv correlated to 'CN_CNMF'.
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10p gain cnv correlated to 'CN_CNMF'.
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10q gain cnv correlated to 'CN_CNMF'.
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11p gain cnv correlated to 'CN_CNMF'.
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11q gain cnv correlated to 'CN_CNMF'.
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12p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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12q gain cnv correlated to 'CN_CNMF'.
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13q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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14q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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16p gain cnv correlated to 'CN_CNMF'.
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17q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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18p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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19q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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21q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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22q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq gain cnv correlated to 'CN_CNMF'.
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1p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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1q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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2p loss cnv correlated to 'CN_CNMF'.
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2q loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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3p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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4p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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5q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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6q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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7p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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7q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8p loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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9p loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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9q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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10q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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11p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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12q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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13q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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14q loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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18q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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19p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20p loss cnv correlated to 'CN_CNMF'.
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20q loss cnv correlated to 'CN_CNMF'.
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21q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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22q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 80 arm-level events and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 414 significant findings detected.
|
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
| nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
| 9q loss | 122 (23%) | 417 |
3e-05 (0.0164) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00038 (0.185) |
0.697 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00086 (0.398) |
2e-05 (0.0113) |
| 8p loss | 80 (15%) | 459 |
0.00785 (1.00) |
6e-05 (0.032) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0345 (1.00) |
0.0265 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
| 15q loss | 109 (20%) | 430 |
0.00061 (0.289) |
6e-05 (0.032) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00097 (0.446) |
0.485 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
| 17p loss | 130 (24%) | 409 |
0.00362 (1.00) |
0.00021 (0.106) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00318 (1.00) |
0.369 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
| 2p gain | 95 (18%) | 444 |
0.854 (1.00) |
0.371 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0569 (1.00) |
0.242 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
4e-05 (0.0216) |
0.00013 (0.0671) |
| 2q gain | 79 (15%) | 460 |
0.344 (1.00) |
0.6 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0643 (1.00) |
0.133 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
3e-05 (0.0164) |
0.00024 (0.121) |
| 3q gain | 84 (16%) | 455 |
0.619 (1.00) |
0.253 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.104 (1.00) |
0.159 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00039 (0.19) |
4e-05 (0.0216) |
| 5p gain | 51 (9%) | 488 |
1 (1.00) |
0.512 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.144 (1.00) |
0.705 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00014 (0.072) |
1e-05 (0.00892) |
| 18p gain | 72 (13%) | 467 |
0.334 (1.00) |
0.242 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0116 (1.00) |
0.163 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
| 18q gain | 45 (8%) | 494 |
0.253 (1.00) |
0.044 (1.00) |
1e-05 (0.00892) |
2e-05 (0.0113) |
0.279 (1.00) |
0.0956 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
2e-05 (0.0113) |
6e-05 (0.032) |
| 20p gain | 112 (21%) | 427 |
0.00873 (1.00) |
0.0494 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.162 (1.00) |
0.742 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00028 (0.14) |
1e-05 (0.00892) |
| 20q gain | 132 (24%) | 407 |
0.00192 (0.849) |
0.008 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0323 (1.00) |
0.669 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
| 22q gain | 31 (6%) | 508 |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.371 (1.00) |
0.187 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
||
| 4p loss | 105 (19%) | 434 |
0.0038 (1.00) |
0.00184 (0.815) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00131 (0.593) |
0.189 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
2e-05 (0.0113) |
1e-05 (0.00892) |
| 4q loss | 105 (19%) | 434 |
0.151 (1.00) |
0.00461 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0131 (1.00) |
0.187 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
| 5q loss | 74 (14%) | 465 |
0.0132 (1.00) |
0.00972 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00122 (0.554) |
0.00231 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00015 (0.0768) |
5e-05 (0.0269) |
| 11p loss | 75 (14%) | 464 |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.302 (1.00) |
0.328 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00037 (0.182) |
1e-05 (0.00892) |
||
| 11q loss | 72 (13%) | 467 |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.852 (1.00) |
0.788 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
||
| 12q loss | 36 (7%) | 503 |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.104 (1.00) |
0.0154 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
6e-05 (0.032) |
0.0004 (0.194) |
||
| 14q loss | 61 (11%) | 478 |
0.00197 (0.867) |
0.00052 (0.249) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0145 (1.00) |
0.0488 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00527 (1.00) |
2e-05 (0.0113) |
| 16q loss | 138 (26%) | 401 |
0.00067 (0.315) |
0.00136 (0.613) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.342 (1.00) |
0.973 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00023 (0.116) |
1e-05 (0.00892) |
| 17q loss | 93 (17%) | 446 |
0.00194 (0.856) |
2e-05 (0.0113) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.109 (1.00) |
0.918 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00457 (1.00) |
0.00048 (0.23) |
| xq loss | 70 (13%) | 469 |
0.00792 (1.00) |
0.00501 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00013 (0.0671) |
0.215 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00322 (1.00) |
1e-05 (0.00892) |
| 19p gain | 54 (10%) | 485 |
0.0384 (1.00) |
0.0292 (1.00) |
1e-05 (0.00892) |
0.00028 (0.14) |
0.907 (1.00) |
0.0736 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00032 (0.159) |
0.0828 (1.00) |
| 19q gain | 57 (11%) | 482 |
1e-05 (0.00892) |
6e-05 (0.032) |
0.488 (1.00) |
0.0431 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00021 (0.106) |
0.0137 (1.00) |
||
| 21q gain | 39 (7%) | 500 |
1e-05 (0.00892) |
0.00047 (0.226) |
0.427 (1.00) |
0.452 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00034 (0.168) |
0.235 (1.00) |
||
| 3p loss | 51 (9%) | 488 |
0.0397 (1.00) |
0.00068 (0.318) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.022 (1.00) |
0.125 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0148 (1.00) |
0.00011 (0.0572) |
| 5p loss | 55 (10%) | 484 |
0.05 (1.00) |
0.0394 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00391 (1.00) |
0.103 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
3e-05 (0.0164) |
0.00101 (0.464) |
| 7q loss | 42 (8%) | 497 |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0476 (1.00) |
0.014 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00214 (0.935) |
0.00043 (0.208) |
||
| 9p loss | 103 (19%) | 436 |
0.00109 (0.499) |
2e-05 (0.0113) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0034 (1.00) |
0.563 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00891 (1.00) |
0.00072 (0.336) |
| 12p loss | 43 (8%) | 496 |
0.138 (1.00) |
0.167 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0424 (1.00) |
0.0379 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00037 (0.182) |
0.00226 (0.981) |
| 16p loss | 97 (18%) | 442 |
0.00209 (0.915) |
0.00743 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0942 (1.00) |
0.318 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00438 (1.00) |
2e-05 (0.0113) |
| 19p loss | 59 (11%) | 480 |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0973 (1.00) |
0.269 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00567 (1.00) |
1e-05 (0.00892) |
||
| 19q loss | 56 (10%) | 483 |
0.252 (1.00) |
0.0172 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.247 (1.00) |
0.719 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0109 (1.00) |
3e-05 (0.0164) |
| 21q loss | 54 (10%) | 485 |
0.0394 (1.00) |
0.0302 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.24 (1.00) |
0.426 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00379 (1.00) |
1e-05 (0.00892) |
| 22q loss | 109 (20%) | 430 |
0.00183 (0.813) |
0.00766 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0396 (1.00) |
0.279 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00328 (1.00) |
0.0002 (0.102) |
| 1p gain | 50 (9%) | 489 |
0.532 (1.00) |
0.218 (1.00) |
1e-05 (0.00892) |
0.00046 (0.222) |
0.0459 (1.00) |
0.265 (1.00) |
1e-05 (0.00892) |
2e-05 (0.0113) |
2e-05 (0.0113) |
1e-05 (0.00892) |
0.00222 (0.966) |
0.00276 (1.00) |
| 6p gain | 80 (15%) | 459 |
0.21 (1.00) |
0.666 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0986 (1.00) |
0.833 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00215 (0.937) |
0.0202 (1.00) |
| 12p gain | 71 (13%) | 468 |
0.385 (1.00) |
0.69 (1.00) |
1e-05 (0.00892) |
2e-05 (0.0113) |
0.915 (1.00) |
0.971 (1.00) |
1e-05 (0.00892) |
3e-05 (0.0164) |
0.00035 (0.173) |
0.00026 (0.13) |
0.00417 (1.00) |
0.00359 (1.00) |
| 13q gain | 30 (6%) | 509 |
0.136 (1.00) |
0.00726 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.251 (1.00) |
0.0125 (1.00) |
2e-05 (0.0113) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00728 (1.00) |
0.0233 (1.00) |
| 17q gain | 30 (6%) | 509 |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0398 (1.00) |
1 (1.00) |
2e-05 (0.0113) |
1e-05 (0.00892) |
2e-05 (0.0113) |
0.00019 (0.0971) |
0.0504 (1.00) |
0.0909 (1.00) |
||
| 1p loss | 25 (5%) | 514 |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.788 (1.00) |
0.362 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
5e-05 (0.0269) |
1e-05 (0.00892) |
0.294 (1.00) |
0.00064 (0.302) |
||
| 1q loss | 14 (3%) | 525 |
1e-05 (0.00892) |
8e-05 (0.0419) |
5e-05 (0.0269) |
8e-05 (0.0419) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.525 (1.00) |
0.00726 (1.00) |
||||
| 6q loss | 25 (5%) | 514 |
0.38 (1.00) |
0.0301 (1.00) |
1e-05 (0.00892) |
0.0001 (0.0522) |
0.473 (1.00) |
0.803 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00024 (0.121) |
3e-05 (0.0164) |
0.0121 (1.00) |
0.0031 (1.00) |
| 7p loss | 44 (8%) | 495 |
0.0385 (1.00) |
0.194 (1.00) |
1e-05 (0.00892) |
0.00037 (0.182) |
0.0366 (1.00) |
0.554 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0614 (1.00) |
0.0611 (1.00) |
| 8q loss | 25 (5%) | 514 |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.326 (1.00) |
0.84 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
2e-05 (0.0113) |
0.00092 (0.424) |
0.00936 (1.00) |
||
| 10p loss | 43 (8%) | 496 |
0.0389 (1.00) |
0.0302 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0556 (1.00) |
0.185 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.025 (1.00) |
0.00408 (1.00) |
| 10q loss | 40 (7%) | 499 |
0.138 (1.00) |
0.167 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0539 (1.00) |
0.169 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
2e-05 (0.0113) |
1e-05 (0.00892) |
0.0307 (1.00) |
0.00454 (1.00) |
| 13q loss | 93 (17%) | 446 |
0.903 (1.00) |
0.193 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0252 (1.00) |
0.496 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
3e-05 (0.0164) |
0.165 (1.00) |
0.00236 (1.00) |
| 18q loss | 65 (12%) | 474 |
0.534 (1.00) |
0.514 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.529 (1.00) |
1 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.0118 (1.00) |
0.0006 (0.285) |
| 8q gain | 159 (29%) | 380 |
0.0108 (1.00) |
0.0294 (1.00) |
1e-05 (0.00892) |
0.0414 (1.00) |
0.0003 (0.149) |
0.0219 (1.00) |
1e-05 (0.00892) |
0.00064 (0.302) |
0.00042 (0.204) |
7e-05 (0.0368) |
0.00054 (0.258) |
0.0074 (1.00) |
| 3q loss | 31 (6%) | 508 |
0.0393 (1.00) |
0.00071 (0.332) |
1e-05 (0.00892) |
6e-05 (0.032) |
0.0637 (1.00) |
0.266 (1.00) |
1e-05 (0.00892) |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.00175 (0.78) |
0.0123 (1.00) |
0.0971 (1.00) |
| 18p loss | 52 (10%) | 487 |
1e-05 (0.00892) |
1e-05 (0.00892) |
0.475 (1.00) |
0.564 (1.00) |
1e-05 (0.00892) |
0.00678 (1.00) |
0.0001 (0.0522) |
0.00027 (0.135) |
0.0169 (1.00) |
0.00328 (1.00) |
||
| 5q gain | 20 (4%) | 519 |
1e-05 (0.00892) |
0.0355 (1.00) |
0.372 (1.00) |
0.292 (1.00) |
0.00037 (0.182) |
0.00131 (0.593) |
0.0012 (0.546) |
0.00019 (0.0971) |
0.227 (1.00) |
0.00014 (0.072) |
||
| 1q gain | 188 (35%) | 351 |
0.181 (1.00) |
0.0101 (1.00) |
2e-05 (0.0113) |
0.187 (1.00) |
0.0941 (1.00) |
0.0162 (1.00) |
6e-05 (0.032) |
0.00076 (0.353) |
1e-05 (0.00892) |
0.00926 (1.00) |
0.902 (1.00) |
0.0773 (1.00) |
| 6q gain | 64 (12%) | 475 |
0.208 (1.00) |
0.662 (1.00) |
1e-05 (0.00892) |
0.00057 (0.272) |
0.053 (1.00) |
0.757 (1.00) |
2e-05 (0.0113) |
0.00089 (0.411) |
0.0011 (0.503) |
0.00012 (0.0623) |
0.0155 (1.00) |
0.302 (1.00) |
| 14q gain | 37 (7%) | 502 |
1 (1.00) |
0.841 (1.00) |
1e-05 (0.00892) |
0.00204 (0.896) |
0.0856 (1.00) |
0.693 (1.00) |
1e-05 (0.00892) |
0.00012 (0.0623) |
0.00179 (0.797) |
0.00882 (1.00) |
0.0939 (1.00) |
0.309 (1.00) |
| 6p loss | 18 (3%) | 521 |
0.379 (1.00) |
0.0295 (1.00) |
1e-05 (0.00892) |
0.00146 (0.654) |
0.363 (1.00) |
1 (1.00) |
0.00036 (0.177) |
3e-05 (0.0164) |
0.00675 (1.00) |
0.00067 (0.315) |
0.0681 (1.00) |
0.0244 (1.00) |
| 3p gain | 49 (9%) | 490 |
1e-05 (0.00892) |
0.00905 (1.00) |
0.301 (1.00) |
0.947 (1.00) |
5e-05 (0.0269) |
0.00911 (1.00) |
0.00142 (0.638) |
0.0008 (0.371) |
0.0144 (1.00) |
0.0366 (1.00) |
||
| 2q loss | 17 (3%) | 522 |
1e-05 (0.00892) |
0.113 (1.00) |
0.00023 (0.116) |
0.0615 (1.00) |
0.023 (1.00) |
0.186 (1.00) |
0.415 (1.00) |
0.801 (1.00) |
||||
| 4p gain | 14 (3%) | 525 |
5e-05 (0.0269) |
0.847 (1.00) |
0.375 (1.00) |
0.0362 (1.00) |
0.00059 (0.281) |
0.0102 (1.00) |
0.00478 (1.00) |
0.00552 (1.00) |
0.348 (1.00) |
0.435 (1.00) |
||
| 7p gain | 67 (12%) | 472 |
0.855 (1.00) |
0.906 (1.00) |
1e-05 (0.00892) |
0.00119 (0.543) |
0.847 (1.00) |
0.865 (1.00) |
0.0185 (1.00) |
0.091 (1.00) |
0.0102 (1.00) |
0.384 (1.00) |
0.0322 (1.00) |
0.0525 (1.00) |
| 7q gain | 66 (12%) | 473 |
0.857 (1.00) |
0.905 (1.00) |
1e-05 (0.00892) |
0.00136 (0.613) |
0.855 (1.00) |
0.537 (1.00) |
0.121 (1.00) |
0.165 (1.00) |
0.0599 (1.00) |
0.371 (1.00) |
0.0905 (1.00) |
0.212 (1.00) |
| 8p gain | 118 (22%) | 421 |
0.356 (1.00) |
0.402 (1.00) |
1e-05 (0.00892) |
0.881 (1.00) |
0.0204 (1.00) |
0.215 (1.00) |
0.19 (1.00) |
0.88 (1.00) |
0.207 (1.00) |
0.0978 (1.00) |
0.116 (1.00) |
0.507 (1.00) |
| 9p gain | 22 (4%) | 517 |
0.00012 (0.0623) |
0.00369 (1.00) |
0.0948 (1.00) |
0.326 (1.00) |
0.00503 (1.00) |
0.0432 (1.00) |
0.00439 (1.00) |
0.0427 (1.00) |
0.102 (1.00) |
0.368 (1.00) |
||
| 10p gain | 117 (22%) | 422 |
0.00717 (1.00) |
0.0875 (1.00) |
1e-05 (0.00892) |
0.873 (1.00) |
0.195 (1.00) |
0.815 (1.00) |
0.124 (1.00) |
0.127 (1.00) |
0.72 (1.00) |
0.0247 (1.00) |
0.533 (1.00) |
0.0351 (1.00) |
| 10q gain | 109 (20%) | 430 |
0.00484 (1.00) |
0.0884 (1.00) |
7e-05 (0.0368) |
0.731 (1.00) |
0.123 (1.00) |
0.662 (1.00) |
0.204 (1.00) |
0.211 (1.00) |
0.478 (1.00) |
0.00451 (1.00) |
0.565 (1.00) |
0.0603 (1.00) |
| 11p gain | 23 (4%) | 516 |
0.0399 (1.00) |
0.196 (1.00) |
1e-05 (0.00892) |
0.0444 (1.00) |
0.0573 (1.00) |
0.114 (1.00) |
0.00282 (1.00) |
0.00399 (1.00) |
0.00304 (1.00) |
0.0112 (1.00) |
0.229 (1.00) |
0.363 (1.00) |
| 11q gain | 19 (4%) | 520 |
1e-05 (0.00892) |
0.112 (1.00) |
0.178 (1.00) |
0.0117 (1.00) |
0.0313 (1.00) |
0.159 (1.00) |
0.0738 (1.00) |
0.106 (1.00) |
0.885 (1.00) |
0.654 (1.00) |
||
| 12q gain | 54 (10%) | 485 |
0.385 (1.00) |
0.689 (1.00) |
2e-05 (0.0113) |
0.00867 (1.00) |
0.962 (1.00) |
0.98 (1.00) |
0.00308 (1.00) |
0.008 (1.00) |
0.031 (1.00) |
0.132 (1.00) |
0.202 (1.00) |
0.274 (1.00) |
| 16p gain | 27 (5%) | 512 |
1e-05 (0.00892) |
0.0024 (1.00) |
0.18 (1.00) |
0.632 (1.00) |
0.0487 (1.00) |
0.0735 (1.00) |
0.0155 (1.00) |
0.0716 (1.00) |
0.145 (1.00) |
0.358 (1.00) |
||
| xq gain | 65 (12%) | 474 |
0.705 (1.00) |
0.926 (1.00) |
1e-05 (0.00892) |
0.466 (1.00) |
0.872 (1.00) |
0.335 (1.00) |
0.681 (1.00) |
0.318 (1.00) |
0.528 (1.00) |
0.659 (1.00) |
0.175 (1.00) |
0.803 (1.00) |
| 2p loss | 11 (2%) | 528 |
0.0002 (0.102) |
0.301 (1.00) |
0.00458 (1.00) |
0.0897 (1.00) |
0.465 (1.00) |
0.133 (1.00) |
0.555 (1.00) |
0.722 (1.00) |
||||
| 20p loss | 19 (4%) | 520 |
1e-05 (0.00892) |
0.209 (1.00) |
0.469 (1.00) |
0.666 (1.00) |
0.0264 (1.00) |
0.00529 (1.00) |
0.00689 (1.00) |
0.0272 (1.00) |
0.418 (1.00) |
0.43 (1.00) |
||
| 20q loss | 9 (2%) | 530 |
0.00043 (0.208) |
0.0886 (1.00) |
0.642 (1.00) |
1 (1.00) |
0.0356 (1.00) |
0.00316 (1.00) |
0.0514 (1.00) |
0.0185 (1.00) |
0.177 (1.00) |
0.246 (1.00) |
||
| 4q gain | 8 (1%) | 531 |
0.00446 (1.00) |
0.622 (1.00) |
0.03 (1.00) |
0.144 (1.00) |
0.271 (1.00) |
0.1 (1.00) |
0.797 (1.00) |
0.635 (1.00) |
||||
| 9q gain | 9 (2%) | 530 |
0.0311 (1.00) |
0.168 (1.00) |
0.363 (1.00) |
0.58 (1.00) |
0.158 (1.00) |
0.358 (1.00) |
0.66 (1.00) |
0.264 (1.00) |
||||
| 15q gain | 11 (2%) | 528 |
0.00063 (0.298) |
0.915 (1.00) |
0.692 (1.00) |
0.503 (1.00) |
0.466 (1.00) |
0.943 (1.00) |
1 (1.00) |
0.249 (1.00) |
||||
| 16q gain | 10 (2%) | 529 |
0.012 (1.00) |
0.0514 (1.00) |
0.945 (1.00) |
0.84 (1.00) |
0.172 (1.00) |
0.268 (1.00) |
0.0917 (1.00) |
0.489 (1.00) |
0.62 (1.00) |
0.796 (1.00) |
||
| 17p gain | 12 (2%) | 527 |
0.00153 (0.684) |
0.162 (1.00) |
0.223 (1.00) |
1 (1.00) |
0.105 (1.00) |
0.0041 (1.00) |
0.0763 (1.00) |
0.0468 (1.00) |
0.346 (1.00) |
0.666 (1.00) |
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S1. Gene #1: '1p gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 1P GAIN MUTATED | 38 | 6 | 2 | 0 | 4 |
| 1P GAIN WILD-TYPE | 131 | 299 | 17 | 9 | 33 |
Figure S1. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00046 (Fisher's exact test), Q value = 0.22
Table S2. Gene #1: '1p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 1P GAIN MUTATED | 30 | 5 | 10 |
| 1P GAIN WILD-TYPE | 135 | 84 | 161 |
Figure S2. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S3. Gene #1: '1p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 1P GAIN MUTATED | 6 | 38 | 5 |
| 1P GAIN WILD-TYPE | 145 | 192 | 144 |
Figure S3. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S4. Gene #1: '1p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 1P GAIN MUTATED | 12 | 31 | 6 |
| 1P GAIN WILD-TYPE | 204 | 138 | 139 |
Figure S4. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S5. Gene #1: '1p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 1P GAIN MUTATED | 36 | 10 | 3 |
| 1P GAIN WILD-TYPE | 190 | 133 | 158 |
Figure S5. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S6. Gene #1: '1p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 1P GAIN MUTATED | 4 | 2 | 27 | 16 |
| 1P GAIN WILD-TYPE | 137 | 58 | 96 | 190 |
Figure S6. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S7. Gene #2: '1q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 1Q GAIN MUTATED | 57 | 90 | 12 | 8 | 21 |
| 1Q GAIN WILD-TYPE | 112 | 215 | 7 | 1 | 16 |
Figure S7. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 6e-05 (Fisher's exact test), Q value = 0.032
Table S8. Gene #2: '1q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 1Q GAIN MUTATED | 72 | 75 | 36 |
| 1Q GAIN WILD-TYPE | 79 | 155 | 113 |
Figure S8. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S9. Gene #2: '1q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 1Q GAIN MUTATED | 72 | 74 | 41 |
| 1Q GAIN WILD-TYPE | 154 | 69 | 120 |
Figure S9. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S10. Gene #3: '2p gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 2P GAIN MUTATED | 62 | 9 | 10 | 3 | 11 |
| 2P GAIN WILD-TYPE | 107 | 296 | 9 | 6 | 26 |
Figure S10. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S11. Gene #3: '2p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 2P GAIN MUTATED | 53 | 9 | 11 |
| 2P GAIN WILD-TYPE | 112 | 80 | 160 |
Figure S11. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S12. Gene #3: '2p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 2P GAIN MUTATED | 16 | 68 | 9 |
| 2P GAIN WILD-TYPE | 135 | 162 | 140 |
Figure S12. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S13. Gene #3: '2p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 2P GAIN MUTATED | 25 | 59 | 9 |
| 2P GAIN WILD-TYPE | 191 | 110 | 136 |
Figure S13. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S14. Gene #3: '2p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 2P GAIN MUTATED | 66 | 17 | 11 |
| 2P GAIN WILD-TYPE | 160 | 126 | 150 |
Figure S14. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S15. Gene #3: '2p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 2P GAIN MUTATED | 10 | 8 | 48 | 28 |
| 2P GAIN WILD-TYPE | 131 | 52 | 75 | 178 |
Figure S15. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4e-05 (Fisher's exact test), Q value = 0.022
Table S16. Gene #3: '2p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 2P GAIN MUTATED | 42 | 20 | 8 |
| 2P GAIN WILD-TYPE | 130 | 76 | 122 |
Figure S16. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00013 (Fisher's exact test), Q value = 0.067
Table S17. Gene #3: '2p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 2P GAIN MUTATED | 35 | 7 | 28 |
| 2P GAIN WILD-TYPE | 109 | 108 | 111 |
Figure S17. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S18. Gene #4: '2q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 2Q GAIN MUTATED | 52 | 7 | 8 | 3 | 9 |
| 2Q GAIN WILD-TYPE | 117 | 298 | 11 | 6 | 28 |
Figure S18. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S19. Gene #4: '2q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 2Q GAIN MUTATED | 47 | 7 | 10 |
| 2Q GAIN WILD-TYPE | 118 | 82 | 161 |
Figure S19. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S20. Gene #4: '2q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 2Q GAIN MUTATED | 13 | 57 | 7 |
| 2Q GAIN WILD-TYPE | 138 | 173 | 142 |
Figure S20. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S21. Gene #4: '2q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 2Q GAIN MUTATED | 19 | 50 | 8 |
| 2Q GAIN WILD-TYPE | 197 | 119 | 137 |
Figure S21. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S22. Gene #4: '2q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 2Q GAIN MUTATED | 55 | 16 | 8 |
| 2Q GAIN WILD-TYPE | 171 | 127 | 153 |
Figure S22. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S23. Gene #4: '2q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 2Q GAIN MUTATED | 8 | 5 | 42 | 24 |
| 2Q GAIN WILD-TYPE | 133 | 55 | 81 | 182 |
Figure S23. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.016
Table S24. Gene #4: '2q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 2Q GAIN MUTATED | 39 | 16 | 7 |
| 2Q GAIN WILD-TYPE | 133 | 80 | 123 |
Figure S24. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00024 (Fisher's exact test), Q value = 0.12
Table S25. Gene #4: '2q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 2Q GAIN MUTATED | 31 | 6 | 25 |
| 2Q GAIN WILD-TYPE | 113 | 109 | 114 |
Figure S25. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S26. Gene #5: '3p gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 3P GAIN MUTATED | 31 | 2 | 1 | 3 | 12 |
| 3P GAIN WILD-TYPE | 138 | 303 | 18 | 6 | 25 |
Figure S26. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 5e-05 (Fisher's exact test), Q value = 0.027
Table S27. Gene #5: '3p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 3P GAIN MUTATED | 4 | 35 | 9 |
| 3P GAIN WILD-TYPE | 147 | 195 | 140 |
Figure S27. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S28. Gene #6: '3q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 3Q GAIN MUTATED | 62 | 4 | 2 | 3 | 13 |
| 3Q GAIN WILD-TYPE | 107 | 301 | 17 | 6 | 24 |
Figure S28. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S29. Gene #6: '3q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 3Q GAIN MUTATED | 54 | 9 | 11 |
| 3Q GAIN WILD-TYPE | 111 | 80 | 160 |
Figure S29. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S30. Gene #6: '3q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 3Q GAIN MUTATED | 6 | 66 | 10 |
| 3Q GAIN WILD-TYPE | 145 | 164 | 139 |
Figure S30. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S31. Gene #6: '3q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 3Q GAIN MUTATED | 18 | 55 | 9 |
| 3Q GAIN WILD-TYPE | 198 | 114 | 136 |
Figure S31. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S32. Gene #6: '3q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 3Q GAIN MUTATED | 64 | 11 | 9 |
| 3Q GAIN WILD-TYPE | 162 | 132 | 152 |
Figure S32. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S33. Gene #6: '3q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 3Q GAIN MUTATED | 12 | 0 | 46 | 26 |
| 3Q GAIN WILD-TYPE | 129 | 60 | 77 | 180 |
Figure S33. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00039 (Fisher's exact test), Q value = 0.19
Table S34. Gene #6: '3q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 3Q GAIN MUTATED | 43 | 17 | 10 |
| 3Q GAIN WILD-TYPE | 129 | 79 | 120 |
Figure S34. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.022
Table S35. Gene #6: '3q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 3Q GAIN MUTATED | 41 | 8 | 21 |
| 3Q GAIN WILD-TYPE | 103 | 107 | 118 |
Figure S35. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 5e-05 (Fisher's exact test), Q value = 0.027
Table S36. Gene #7: '4p gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 4P GAIN MUTATED | 13 | 0 | 0 | 0 | 1 |
| 4P GAIN WILD-TYPE | 156 | 305 | 19 | 9 | 36 |
Figure S36. Get High-res Image Gene #7: '4p gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S37. Gene #9: '5p gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 5P GAIN MUTATED | 43 | 3 | 4 | 1 | 0 |
| 5P GAIN WILD-TYPE | 126 | 302 | 15 | 8 | 37 |
Figure S37. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S38. Gene #9: '5p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 5P GAIN MUTATED | 34 | 5 | 5 |
| 5P GAIN WILD-TYPE | 131 | 84 | 166 |
Figure S38. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S39. Gene #9: '5p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 5P GAIN MUTATED | 5 | 44 | 1 |
| 5P GAIN WILD-TYPE | 146 | 186 | 148 |
Figure S39. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S40. Gene #9: '5p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 5P GAIN MUTATED | 10 | 38 | 2 |
| 5P GAIN WILD-TYPE | 206 | 131 | 143 |
Figure S40. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S41. Gene #9: '5p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 5P GAIN MUTATED | 41 | 9 | 1 |
| 5P GAIN WILD-TYPE | 185 | 134 | 160 |
Figure S41. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S42. Gene #9: '5p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 5P GAIN MUTATED | 1 | 5 | 34 | 11 |
| 5P GAIN WILD-TYPE | 140 | 55 | 89 | 195 |
Figure S42. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00014 (Fisher's exact test), Q value = 0.072
Table S43. Gene #9: '5p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 5P GAIN MUTATED | 30 | 8 | 4 |
| 5P GAIN WILD-TYPE | 142 | 88 | 126 |
Figure S43. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S44. Gene #9: '5p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 5P GAIN MUTATED | 32 | 1 | 9 |
| 5P GAIN WILD-TYPE | 112 | 114 | 130 |
Figure S44. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S45. Gene #10: '5q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 5Q GAIN MUTATED | 15 | 1 | 3 | 1 | 0 |
| 5Q GAIN WILD-TYPE | 154 | 304 | 16 | 8 | 37 |
Figure S45. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00037 (Fisher's exact test), Q value = 0.18
Table S46. Gene #10: '5q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 5Q GAIN MUTATED | 3 | 16 | 0 |
| 5Q GAIN WILD-TYPE | 148 | 214 | 149 |
Figure S46. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00019 (Fisher's exact test), Q value = 0.097
Table S47. Gene #10: '5q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 5Q GAIN MUTATED | 0 | 3 | 12 | 5 |
| 5Q GAIN WILD-TYPE | 141 | 57 | 111 | 201 |
Figure S47. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00014 (Fisher's exact test), Q value = 0.072
Table S48. Gene #10: '5q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 5Q GAIN MUTATED | 14 | 0 | 3 |
| 5Q GAIN WILD-TYPE | 130 | 115 | 136 |
Figure S48. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S49. Gene #11: '6p gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 6P GAIN MUTATED | 61 | 5 | 1 | 1 | 12 |
| 6P GAIN WILD-TYPE | 108 | 300 | 18 | 8 | 25 |
Figure S49. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S50. Gene #11: '6p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 6P GAIN MUTATED | 49 | 12 | 11 |
| 6P GAIN WILD-TYPE | 116 | 77 | 160 |
Figure S50. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S51. Gene #11: '6p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 6P GAIN MUTATED | 6 | 60 | 14 |
| 6P GAIN WILD-TYPE | 145 | 170 | 135 |
Figure S51. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S52. Gene #11: '6p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 6P GAIN MUTATED | 19 | 48 | 13 |
| 6P GAIN WILD-TYPE | 197 | 121 | 132 |
Figure S52. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S53. Gene #11: '6p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 6P GAIN MUTATED | 56 | 13 | 11 |
| 6P GAIN WILD-TYPE | 170 | 130 | 150 |
Figure S53. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S54. Gene #11: '6p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 6P GAIN MUTATED | 11 | 1 | 38 | 30 |
| 6P GAIN WILD-TYPE | 130 | 59 | 85 | 176 |
Figure S54. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S55. Gene #12: '6q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 6Q GAIN MUTATED | 46 | 5 | 1 | 1 | 11 |
| 6Q GAIN WILD-TYPE | 123 | 300 | 18 | 8 | 26 |
Figure S55. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S56. Gene #12: '6q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 6Q GAIN MUTATED | 6 | 44 | 14 |
| 6Q GAIN WILD-TYPE | 145 | 186 | 135 |
Figure S56. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00012 (Fisher's exact test), Q value = 0.062
Table S57. Gene #12: '6q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 6Q GAIN MUTATED | 11 | 1 | 27 | 25 |
| 6Q GAIN WILD-TYPE | 130 | 59 | 96 | 181 |
Figure S57. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S58. Gene #13: '7p gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 7P GAIN MUTATED | 33 | 9 | 12 | 2 | 11 |
| 7P GAIN WILD-TYPE | 136 | 296 | 7 | 7 | 26 |
Figure S58. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S59. Gene #14: '7q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 7Q GAIN MUTATED | 30 | 12 | 12 | 2 | 10 |
| 7Q GAIN WILD-TYPE | 139 | 293 | 7 | 7 | 27 |
Figure S59. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S60. Gene #15: '8p gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 8P GAIN MUTATED | 43 | 29 | 8 | 2 | 36 |
| 8P GAIN WILD-TYPE | 126 | 276 | 11 | 7 | 1 |
Figure S60. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S61. Gene #16: '8q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 8Q GAIN MUTATED | 80 | 31 | 8 | 3 | 37 |
| 8Q GAIN WILD-TYPE | 89 | 274 | 11 | 6 | 0 |
Figure S61. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3e-04 (Fisher's exact test), Q value = 0.15
Table S62. Gene #16: '8q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 41 | 37 | 39 | 12 | 41 | 24 |
| 8Q GAIN MUTATED | 9 | 12 | 7 | 2 | 2 | 13 |
| 8Q GAIN WILD-TYPE | 32 | 25 | 32 | 10 | 39 | 11 |
Figure S62. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S63. Gene #16: '8q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 8Q GAIN MUTATED | 29 | 94 | 34 |
| 8Q GAIN WILD-TYPE | 122 | 136 | 115 |
Figure S63. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00042 (Fisher's exact test), Q value = 0.2
Table S64. Gene #16: '8q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 8Q GAIN MUTATED | 86 | 37 | 33 |
| 8Q GAIN WILD-TYPE | 140 | 106 | 128 |
Figure S64. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 7e-05 (Fisher's exact test), Q value = 0.037
Table S65. Gene #16: '8q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 8Q GAIN MUTATED | 33 | 8 | 53 | 62 |
| 8Q GAIN WILD-TYPE | 108 | 52 | 70 | 144 |
Figure S65. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00012 (Fisher's exact test), Q value = 0.062
Table S66. Gene #17: '9p gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 9P GAIN MUTATED | 18 | 3 | 0 | 0 | 1 |
| 9P GAIN WILD-TYPE | 151 | 302 | 19 | 9 | 36 |
Figure S66. Get High-res Image Gene #17: '9p gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S67. Gene #19: '10p gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 10P GAIN MUTATED | 41 | 46 | 7 | 4 | 19 |
| 10P GAIN WILD-TYPE | 128 | 259 | 12 | 5 | 18 |
Figure S67. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 7e-05 (Fisher's exact test), Q value = 0.037
Table S68. Gene #20: '10q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 10Q GAIN MUTATED | 36 | 45 | 8 | 4 | 16 |
| 10Q GAIN WILD-TYPE | 133 | 260 | 11 | 5 | 21 |
Figure S68. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S69. Gene #21: '11p gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 11P GAIN MUTATED | 17 | 0 | 4 | 0 | 2 |
| 11P GAIN WILD-TYPE | 152 | 305 | 15 | 9 | 35 |
Figure S69. Get High-res Image Gene #21: '11p gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S70. Gene #22: '11q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 11Q GAIN MUTATED | 13 | 0 | 3 | 0 | 3 |
| 11Q GAIN WILD-TYPE | 156 | 305 | 16 | 9 | 34 |
Figure S70. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S71. Gene #23: '12p gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 12P GAIN MUTATED | 42 | 14 | 7 | 3 | 5 |
| 12P GAIN WILD-TYPE | 127 | 291 | 12 | 6 | 32 |
Figure S71. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S72. Gene #23: '12p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 12P GAIN MUTATED | 35 | 14 | 8 |
| 12P GAIN WILD-TYPE | 130 | 75 | 163 |
Figure S72. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S73. Gene #23: '12p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 12P GAIN MUTATED | 10 | 50 | 9 |
| 12P GAIN WILD-TYPE | 141 | 180 | 140 |
Figure S73. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.016
Table S74. Gene #23: '12p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 12P GAIN MUTATED | 21 | 39 | 9 |
| 12P GAIN WILD-TYPE | 195 | 130 | 136 |
Figure S74. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00035 (Fisher's exact test), Q value = 0.17
Table S75. Gene #23: '12p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 12P GAIN MUTATED | 45 | 16 | 10 |
| 12P GAIN WILD-TYPE | 181 | 127 | 151 |
Figure S75. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00026 (Fisher's exact test), Q value = 0.13
Table S76. Gene #23: '12p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 12P GAIN MUTATED | 10 | 5 | 31 | 25 |
| 12P GAIN WILD-TYPE | 131 | 55 | 92 | 181 |
Figure S76. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S77. Gene #24: '12q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 12Q GAIN MUTATED | 26 | 14 | 6 | 3 | 5 |
| 12Q GAIN WILD-TYPE | 143 | 291 | 13 | 6 | 32 |
Figure S77. Get High-res Image Gene #24: '12q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S78. Gene #25: '13q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 13Q GAIN MUTATED | 27 | 0 | 0 | 1 | 2 |
| 13Q GAIN WILD-TYPE | 142 | 305 | 19 | 8 | 35 |
Figure S78. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S79. Gene #25: '13q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 13Q GAIN MUTATED | 18 | 7 | 1 |
| 13Q GAIN WILD-TYPE | 147 | 82 | 170 |
Figure S79. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S80. Gene #25: '13q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 13Q GAIN MUTATED | 1 | 27 | 2 |
| 13Q GAIN WILD-TYPE | 150 | 203 | 147 |
Figure S80. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S81. Gene #25: '13q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 13Q GAIN MUTATED | 1 | 27 | 2 |
| 13Q GAIN WILD-TYPE | 215 | 142 | 143 |
Figure S81. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S82. Gene #25: '13q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 13Q GAIN MUTATED | 28 | 0 | 2 |
| 13Q GAIN WILD-TYPE | 198 | 143 | 159 |
Figure S82. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S83. Gene #25: '13q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 13Q GAIN MUTATED | 2 | 0 | 23 | 5 |
| 13Q GAIN WILD-TYPE | 139 | 60 | 100 | 201 |
Figure S83. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S84. Gene #26: '14q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 14Q GAIN MUTATED | 26 | 4 | 1 | 0 | 6 |
| 14Q GAIN WILD-TYPE | 143 | 301 | 18 | 9 | 31 |
Figure S84. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S85. Gene #26: '14q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 14Q GAIN MUTATED | 1 | 28 | 6 |
| 14Q GAIN WILD-TYPE | 150 | 202 | 143 |
Figure S85. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00012 (Fisher's exact test), Q value = 0.062
Table S86. Gene #26: '14q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 14Q GAIN MUTATED | 6 | 23 | 6 |
| 14Q GAIN WILD-TYPE | 210 | 146 | 139 |
Figure S86. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S87. Gene #28: '16p gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 16P GAIN MUTATED | 22 | 1 | 1 | 0 | 3 |
| 16P GAIN WILD-TYPE | 147 | 304 | 18 | 9 | 34 |
Figure S87. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S88. Gene #31: '17q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 17Q GAIN MUTATED | 25 | 1 | 0 | 1 | 3 |
| 17Q GAIN WILD-TYPE | 144 | 304 | 19 | 8 | 34 |
Figure S88. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S89. Gene #31: '17q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 17Q GAIN MUTATED | 23 | 2 | 2 |
| 17Q GAIN WILD-TYPE | 142 | 87 | 169 |
Figure S89. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S90. Gene #31: '17q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 17Q GAIN MUTATED | 2 | 25 | 3 |
| 17Q GAIN WILD-TYPE | 149 | 205 | 146 |
Figure S90. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S91. Gene #31: '17q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 17Q GAIN MUTATED | 4 | 24 | 2 |
| 17Q GAIN WILD-TYPE | 212 | 145 | 143 |
Figure S91. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S92. Gene #31: '17q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 17Q GAIN MUTATED | 25 | 2 | 3 |
| 17Q GAIN WILD-TYPE | 201 | 141 | 158 |
Figure S92. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00019 (Fisher's exact test), Q value = 0.097
Table S93. Gene #31: '17q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 17Q GAIN MUTATED | 4 | 1 | 18 | 7 |
| 17Q GAIN WILD-TYPE | 137 | 59 | 105 | 199 |
Figure S93. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S94. Gene #32: '18p gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 18P GAIN MUTATED | 65 | 3 | 3 | 0 | 1 |
| 18P GAIN WILD-TYPE | 104 | 302 | 16 | 9 | 36 |
Figure S94. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S95. Gene #32: '18p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 18P GAIN MUTATED | 45 | 13 | 4 |
| 18P GAIN WILD-TYPE | 120 | 76 | 167 |
Figure S95. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S96. Gene #32: '18p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 18P GAIN MUTATED | 3 | 65 | 4 |
| 18P GAIN WILD-TYPE | 148 | 165 | 145 |
Figure S96. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S97. Gene #32: '18p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 18P GAIN MUTATED | 8 | 60 | 4 |
| 18P GAIN WILD-TYPE | 208 | 109 | 141 |
Figure S97. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S98. Gene #32: '18p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 18P GAIN MUTATED | 62 | 7 | 3 |
| 18P GAIN WILD-TYPE | 164 | 136 | 158 |
Figure S98. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S99. Gene #32: '18p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 18P GAIN MUTATED | 3 | 1 | 51 | 17 |
| 18P GAIN WILD-TYPE | 138 | 59 | 72 | 189 |
Figure S99. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S100. Gene #32: '18p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 18P GAIN MUTATED | 40 | 16 | 3 |
| 18P GAIN WILD-TYPE | 132 | 80 | 127 |
Figure S100. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S101. Gene #32: '18p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 18P GAIN MUTATED | 33 | 2 | 24 |
| 18P GAIN WILD-TYPE | 111 | 113 | 115 |
Figure S101. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S102. Gene #33: '18q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 18Q GAIN MUTATED | 39 | 3 | 2 | 0 | 1 |
| 18Q GAIN WILD-TYPE | 130 | 302 | 17 | 9 | 36 |
Figure S102. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S103. Gene #33: '18q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 18Q GAIN MUTATED | 29 | 7 | 3 |
| 18Q GAIN WILD-TYPE | 136 | 82 | 168 |
Figure S103. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S104. Gene #33: '18q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 18Q GAIN MUTATED | 2 | 40 | 3 |
| 18Q GAIN WILD-TYPE | 149 | 190 | 146 |
Figure S104. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S105. Gene #33: '18q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 18Q GAIN MUTATED | 7 | 35 | 3 |
| 18Q GAIN WILD-TYPE | 209 | 134 | 142 |
Figure S105. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S106. Gene #33: '18q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 18Q GAIN MUTATED | 37 | 7 | 1 |
| 18Q GAIN WILD-TYPE | 189 | 136 | 160 |
Figure S106. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S107. Gene #33: '18q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 18Q GAIN MUTATED | 2 | 1 | 29 | 13 |
| 18Q GAIN WILD-TYPE | 139 | 59 | 94 | 193 |
Figure S107. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S108. Gene #33: '18q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 18Q GAIN MUTATED | 27 | 8 | 1 |
| 18Q GAIN WILD-TYPE | 145 | 88 | 129 |
Figure S108. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 6e-05 (Fisher's exact test), Q value = 0.032
Table S109. Gene #33: '18q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 18Q GAIN MUTATED | 22 | 1 | 13 |
| 18Q GAIN WILD-TYPE | 122 | 114 | 126 |
Figure S109. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S110. Gene #34: '19p gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 19P GAIN MUTATED | 49 | 0 | 1 | 0 | 4 |
| 19P GAIN WILD-TYPE | 120 | 305 | 18 | 9 | 33 |
Figure S110. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00028 (Fisher's exact test), Q value = 0.14
Table S111. Gene #34: '19p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 19P GAIN MUTATED | 30 | 11 | 8 |
| 19P GAIN WILD-TYPE | 135 | 78 | 163 |
Figure S111. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S112. Gene #34: '19p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 19P GAIN MUTATED | 2 | 47 | 4 |
| 19P GAIN WILD-TYPE | 149 | 183 | 145 |
Figure S112. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S113. Gene #34: '19p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 19P GAIN MUTATED | 11 | 39 | 3 |
| 19P GAIN WILD-TYPE | 205 | 130 | 142 |
Figure S113. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S114. Gene #34: '19p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 19P GAIN MUTATED | 45 | 4 | 5 |
| 19P GAIN WILD-TYPE | 181 | 139 | 156 |
Figure S114. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S115. Gene #34: '19p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 19P GAIN MUTATED | 7 | 1 | 30 | 16 |
| 19P GAIN WILD-TYPE | 134 | 59 | 93 | 190 |
Figure S115. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00032 (Fisher's exact test), Q value = 0.16
Table S116. Gene #34: '19p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 19P GAIN MUTATED | 28 | 14 | 4 |
| 19P GAIN WILD-TYPE | 144 | 82 | 126 |
Figure S116. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S117. Gene #35: '19q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 19Q GAIN MUTATED | 51 | 0 | 2 | 0 | 4 |
| 19Q GAIN WILD-TYPE | 118 | 305 | 17 | 9 | 33 |
Figure S117. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 6e-05 (Fisher's exact test), Q value = 0.032
Table S118. Gene #35: '19q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 19Q GAIN MUTATED | 33 | 11 | 7 |
| 19Q GAIN WILD-TYPE | 132 | 78 | 164 |
Figure S118. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S119. Gene #35: '19q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 19Q GAIN MUTATED | 2 | 51 | 3 |
| 19Q GAIN WILD-TYPE | 149 | 179 | 146 |
Figure S119. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S120. Gene #35: '19q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 19Q GAIN MUTATED | 10 | 44 | 2 |
| 19Q GAIN WILD-TYPE | 206 | 125 | 143 |
Figure S120. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S121. Gene #35: '19q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 19Q GAIN MUTATED | 48 | 5 | 4 |
| 19Q GAIN WILD-TYPE | 178 | 138 | 157 |
Figure S121. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S122. Gene #35: '19q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 19Q GAIN MUTATED | 5 | 1 | 39 | 12 |
| 19Q GAIN WILD-TYPE | 136 | 59 | 84 | 194 |
Figure S122. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00021 (Fisher's exact test), Q value = 0.11
Table S123. Gene #35: '19q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 19Q GAIN MUTATED | 29 | 15 | 4 |
| 19Q GAIN WILD-TYPE | 143 | 81 | 126 |
Figure S123. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S124. Gene #36: '20p gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 20P GAIN MUTATED | 85 | 7 | 12 | 2 | 6 |
| 20P GAIN WILD-TYPE | 84 | 298 | 7 | 7 | 31 |
Figure S124. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S125. Gene #36: '20p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 20P GAIN MUTATED | 73 | 13 | 17 |
| 20P GAIN WILD-TYPE | 92 | 76 | 154 |
Figure S125. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S126. Gene #36: '20p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 20P GAIN MUTATED | 9 | 88 | 14 |
| 20P GAIN WILD-TYPE | 142 | 142 | 135 |
Figure S126. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S127. Gene #36: '20p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 20P GAIN MUTATED | 19 | 77 | 15 |
| 20P GAIN WILD-TYPE | 197 | 92 | 130 |
Figure S127. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S128. Gene #36: '20p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 20P GAIN MUTATED | 83 | 14 | 14 |
| 20P GAIN WILD-TYPE | 143 | 129 | 147 |
Figure S128. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S129. Gene #36: '20p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 20P GAIN MUTATED | 14 | 7 | 60 | 30 |
| 20P GAIN WILD-TYPE | 127 | 53 | 63 | 176 |
Figure S129. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00028 (Fisher's exact test), Q value = 0.14
Table S130. Gene #36: '20p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 20P GAIN MUTATED | 58 | 20 | 18 |
| 20P GAIN WILD-TYPE | 114 | 76 | 112 |
Figure S130. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S131. Gene #36: '20p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 20P GAIN MUTATED | 56 | 15 | 25 |
| 20P GAIN WILD-TYPE | 88 | 100 | 114 |
Figure S131. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S132. Gene #37: '20q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 20Q GAIN MUTATED | 103 | 8 | 12 | 2 | 7 |
| 20Q GAIN WILD-TYPE | 66 | 297 | 7 | 7 | 30 |
Figure S132. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S133. Gene #37: '20q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 20Q GAIN MUTATED | 83 | 16 | 21 |
| 20Q GAIN WILD-TYPE | 82 | 73 | 150 |
Figure S133. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S134. Gene #37: '20q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 20Q GAIN MUTATED | 10 | 102 | 18 |
| 20Q GAIN WILD-TYPE | 141 | 128 | 131 |
Figure S134. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S135. Gene #37: '20q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 20Q GAIN MUTATED | 22 | 89 | 19 |
| 20Q GAIN WILD-TYPE | 194 | 80 | 126 |
Figure S135. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S136. Gene #37: '20q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 20Q GAIN MUTATED | 97 | 15 | 18 |
| 20Q GAIN WILD-TYPE | 129 | 128 | 143 |
Figure S136. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S137. Gene #37: '20q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 20Q GAIN MUTATED | 19 | 7 | 68 | 36 |
| 20Q GAIN WILD-TYPE | 122 | 53 | 55 | 170 |
Figure S137. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S138. Gene #37: '20q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 20Q GAIN MUTATED | 70 | 23 | 19 |
| 20Q GAIN WILD-TYPE | 102 | 73 | 111 |
Figure S138. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S139. Gene #37: '20q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 20Q GAIN MUTATED | 64 | 18 | 30 |
| 20Q GAIN WILD-TYPE | 80 | 97 | 109 |
Figure S139. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S140. Gene #38: '21q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 21Q GAIN MUTATED | 35 | 1 | 0 | 0 | 3 |
| 21Q GAIN WILD-TYPE | 134 | 304 | 19 | 9 | 34 |
Figure S140. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00047 (Fisher's exact test), Q value = 0.23
Table S141. Gene #38: '21q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 21Q GAIN MUTATED | 24 | 7 | 5 |
| 21Q GAIN WILD-TYPE | 141 | 82 | 166 |
Figure S141. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S142. Gene #38: '21q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 21Q GAIN MUTATED | 2 | 33 | 4 |
| 21Q GAIN WILD-TYPE | 149 | 197 | 145 |
Figure S142. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S143. Gene #38: '21q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 21Q GAIN MUTATED | 4 | 31 | 4 |
| 21Q GAIN WILD-TYPE | 212 | 138 | 141 |
Figure S143. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S144. Gene #38: '21q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 21Q GAIN MUTATED | 34 | 2 | 3 |
| 21Q GAIN WILD-TYPE | 192 | 141 | 158 |
Figure S144. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S145. Gene #38: '21q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 21Q GAIN MUTATED | 4 | 1 | 27 | 7 |
| 21Q GAIN WILD-TYPE | 137 | 59 | 96 | 199 |
Figure S145. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00034 (Fisher's exact test), Q value = 0.17
Table S146. Gene #38: '21q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 21Q GAIN MUTATED | 23 | 10 | 2 |
| 21Q GAIN WILD-TYPE | 149 | 86 | 128 |
Figure S146. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S147. Gene #39: '22q gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 22Q GAIN MUTATED | 27 | 3 | 0 | 1 | 0 |
| 22Q GAIN WILD-TYPE | 142 | 302 | 19 | 8 | 37 |
Figure S147. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S148. Gene #39: '22q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 22Q GAIN MUTATED | 26 | 1 | 1 |
| 22Q GAIN WILD-TYPE | 139 | 88 | 170 |
Figure S148. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S149. Gene #39: '22q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 22Q GAIN MUTATED | 0 | 31 | 0 |
| 22Q GAIN WILD-TYPE | 151 | 199 | 149 |
Figure S149. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S150. Gene #39: '22q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 22Q GAIN MUTATED | 3 | 28 | 0 |
| 22Q GAIN WILD-TYPE | 213 | 141 | 145 |
Figure S150. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S151. Gene #39: '22q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 22Q GAIN MUTATED | 29 | 0 | 1 |
| 22Q GAIN WILD-TYPE | 197 | 143 | 160 |
Figure S151. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S152. Gene #39: '22q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 22Q GAIN MUTATED | 2 | 0 | 22 | 6 |
| 22Q GAIN WILD-TYPE | 139 | 60 | 101 | 200 |
Figure S152. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S153. Gene #39: '22q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 22Q GAIN MUTATED | 24 | 2 | 2 |
| 22Q GAIN WILD-TYPE | 148 | 94 | 128 |
Figure S153. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S154. Gene #39: '22q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 22Q GAIN MUTATED | 22 | 1 | 5 |
| 22Q GAIN WILD-TYPE | 122 | 114 | 134 |
Figure S154. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S155. Gene #40: 'xq gain' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| XQ GAIN MUTATED | 25 | 7 | 8 | 3 | 22 |
| XQ GAIN WILD-TYPE | 144 | 298 | 11 | 6 | 15 |
Figure S155. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S156. Gene #41: '1p loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 1P LOSS MUTATED | 18 | 0 | 3 | 4 | 0 |
| 1P LOSS WILD-TYPE | 151 | 305 | 16 | 5 | 37 |
Figure S156. Get High-res Image Gene #41: '1p loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S157. Gene #41: '1p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 1P LOSS MUTATED | 20 | 1 | 0 |
| 1P LOSS WILD-TYPE | 145 | 88 | 171 |
Figure S157. Get High-res Image Gene #41: '1p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S158. Gene #41: '1p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 1P LOSS MUTATED | 1 | 23 | 1 |
| 1P LOSS WILD-TYPE | 150 | 207 | 148 |
Figure S158. Get High-res Image Gene #41: '1p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S159. Gene #41: '1p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 1P LOSS MUTATED | 5 | 20 | 0 |
| 1P LOSS WILD-TYPE | 211 | 149 | 145 |
Figure S159. Get High-res Image Gene #41: '1p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 5e-05 (Fisher's exact test), Q value = 0.027
Table S160. Gene #41: '1p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 1P LOSS MUTATED | 22 | 2 | 1 |
| 1P LOSS WILD-TYPE | 204 | 141 | 160 |
Figure S160. Get High-res Image Gene #41: '1p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S161. Gene #41: '1p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 1P LOSS MUTATED | 0 | 0 | 19 | 6 |
| 1P LOSS WILD-TYPE | 141 | 60 | 104 | 200 |
Figure S161. Get High-res Image Gene #41: '1p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S162. Gene #42: '1q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 1Q LOSS MUTATED | 12 | 0 | 1 | 1 | 0 |
| 1Q LOSS WILD-TYPE | 157 | 305 | 18 | 8 | 37 |
Figure S162. Get High-res Image Gene #42: '1q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 0.042
Table S163. Gene #42: '1q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 1Q LOSS MUTATED | 12 | 0 | 0 |
| 1Q LOSS WILD-TYPE | 153 | 89 | 171 |
Figure S163. Get High-res Image Gene #42: '1q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 5e-05 (Fisher's exact test), Q value = 0.027
Table S164. Gene #42: '1q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 1Q LOSS MUTATED | 0 | 14 | 0 |
| 1Q LOSS WILD-TYPE | 151 | 216 | 149 |
Figure S164. Get High-res Image Gene #42: '1q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 0.042
Table S165. Gene #42: '1q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 1Q LOSS MUTATED | 2 | 12 | 0 |
| 1Q LOSS WILD-TYPE | 214 | 157 | 145 |
Figure S165. Get High-res Image Gene #42: '1q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S166. Gene #42: '1q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 1Q LOSS MUTATED | 14 | 0 | 0 |
| 1Q LOSS WILD-TYPE | 212 | 143 | 161 |
Figure S166. Get High-res Image Gene #42: '1q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S167. Gene #42: '1q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 1Q LOSS MUTATED | 0 | 0 | 12 | 2 |
| 1Q LOSS WILD-TYPE | 141 | 60 | 111 | 204 |
Figure S167. Get High-res Image Gene #42: '1q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-04 (Fisher's exact test), Q value = 0.1
Table S168. Gene #43: '2p loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 2P LOSS MUTATED | 10 | 0 | 1 | 0 | 0 |
| 2P LOSS WILD-TYPE | 159 | 305 | 18 | 9 | 37 |
Figure S168. Get High-res Image Gene #43: '2p loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S169. Gene #44: '2q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 2Q LOSS MUTATED | 16 | 0 | 1 | 0 | 0 |
| 2Q LOSS WILD-TYPE | 153 | 305 | 18 | 9 | 37 |
Figure S169. Get High-res Image Gene #44: '2q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00023 (Fisher's exact test), Q value = 0.12
Table S170. Gene #44: '2q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 2Q LOSS MUTATED | 0 | 15 | 2 |
| 2Q LOSS WILD-TYPE | 151 | 215 | 147 |
Figure S170. Get High-res Image Gene #44: '2q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S171. Gene #45: '3p loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 3P LOSS MUTATED | 45 | 0 | 3 | 2 | 1 |
| 3P LOSS WILD-TYPE | 124 | 305 | 16 | 7 | 36 |
Figure S171. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S172. Gene #45: '3p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 3P LOSS MUTATED | 33 | 6 | 3 |
| 3P LOSS WILD-TYPE | 132 | 83 | 168 |
Figure S172. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S173. Gene #45: '3p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 3P LOSS MUTATED | 1 | 46 | 2 |
| 3P LOSS WILD-TYPE | 150 | 184 | 147 |
Figure S173. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S174. Gene #45: '3p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 3P LOSS MUTATED | 7 | 40 | 2 |
| 3P LOSS WILD-TYPE | 209 | 129 | 143 |
Figure S174. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S175. Gene #45: '3p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 3P LOSS MUTATED | 40 | 6 | 3 |
| 3P LOSS WILD-TYPE | 186 | 137 | 158 |
Figure S175. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S176. Gene #45: '3p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 3P LOSS MUTATED | 4 | 2 | 29 | 14 |
| 3P LOSS WILD-TYPE | 137 | 58 | 94 | 192 |
Figure S176. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00011 (Fisher's exact test), Q value = 0.057
Table S177. Gene #45: '3p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 3P LOSS MUTATED | 26 | 3 | 11 |
| 3P LOSS WILD-TYPE | 118 | 112 | 128 |
Figure S177. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S178. Gene #46: '3q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 3Q LOSS MUTATED | 27 | 0 | 1 | 2 | 1 |
| 3Q LOSS WILD-TYPE | 142 | 305 | 18 | 7 | 36 |
Figure S178. Get High-res Image Gene #46: '3q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 6e-05 (Fisher's exact test), Q value = 0.032
Table S179. Gene #46: '3q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 3Q LOSS MUTATED | 20 | 3 | 2 |
| 3Q LOSS WILD-TYPE | 145 | 86 | 169 |
Figure S179. Get High-res Image Gene #46: '3q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S180. Gene #46: '3q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 3Q LOSS MUTATED | 0 | 27 | 2 |
| 3Q LOSS WILD-TYPE | 151 | 203 | 147 |
Figure S180. Get High-res Image Gene #46: '3q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S181. Gene #46: '3q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 3Q LOSS MUTATED | 3 | 24 | 2 |
| 3Q LOSS WILD-TYPE | 213 | 145 | 143 |
Figure S181. Get High-res Image Gene #46: '3q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S182. Gene #46: '3q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 3Q LOSS MUTATED | 25 | 1 | 3 |
| 3Q LOSS WILD-TYPE | 201 | 142 | 158 |
Figure S182. Get High-res Image Gene #46: '3q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S183. Gene #47: '4p loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 4P LOSS MUTATED | 91 | 4 | 4 | 4 | 2 |
| 4P LOSS WILD-TYPE | 78 | 301 | 15 | 5 | 35 |
Figure S183. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S184. Gene #47: '4p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 4P LOSS MUTATED | 72 | 16 | 6 |
| 4P LOSS WILD-TYPE | 93 | 73 | 165 |
Figure S184. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S185. Gene #47: '4p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 4P LOSS MUTATED | 6 | 90 | 8 |
| 4P LOSS WILD-TYPE | 145 | 140 | 141 |
Figure S185. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S186. Gene #47: '4p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 4P LOSS MUTATED | 21 | 76 | 7 |
| 4P LOSS WILD-TYPE | 195 | 93 | 138 |
Figure S186. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S187. Gene #47: '4p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 4P LOSS MUTATED | 84 | 11 | 8 |
| 4P LOSS WILD-TYPE | 142 | 132 | 153 |
Figure S187. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S188. Gene #47: '4p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 4P LOSS MUTATED | 6 | 1 | 63 | 33 |
| 4P LOSS WILD-TYPE | 135 | 59 | 60 | 173 |
Figure S188. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S189. Gene #47: '4p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 4P LOSS MUTATED | 55 | 26 | 12 |
| 4P LOSS WILD-TYPE | 117 | 70 | 118 |
Figure S189. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S190. Gene #47: '4p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 4P LOSS MUTATED | 52 | 9 | 32 |
| 4P LOSS WILD-TYPE | 92 | 106 | 107 |
Figure S190. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S191. Gene #48: '4q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 4Q LOSS MUTATED | 92 | 3 | 4 | 4 | 2 |
| 4Q LOSS WILD-TYPE | 77 | 302 | 15 | 5 | 35 |
Figure S191. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S192. Gene #48: '4q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 4Q LOSS MUTATED | 73 | 15 | 5 |
| 4Q LOSS WILD-TYPE | 92 | 74 | 166 |
Figure S192. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S193. Gene #48: '4q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 4Q LOSS MUTATED | 6 | 90 | 8 |
| 4Q LOSS WILD-TYPE | 145 | 140 | 141 |
Figure S193. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S194. Gene #48: '4q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 4Q LOSS MUTATED | 20 | 77 | 7 |
| 4Q LOSS WILD-TYPE | 196 | 92 | 138 |
Figure S194. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S195. Gene #48: '4q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 4Q LOSS MUTATED | 84 | 11 | 8 |
| 4Q LOSS WILD-TYPE | 142 | 132 | 153 |
Figure S195. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S196. Gene #48: '4q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 4Q LOSS MUTATED | 5 | 1 | 62 | 35 |
| 4Q LOSS WILD-TYPE | 136 | 59 | 61 | 171 |
Figure S196. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S197. Gene #48: '4q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 4Q LOSS MUTATED | 53 | 28 | 11 |
| 4Q LOSS WILD-TYPE | 119 | 68 | 119 |
Figure S197. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S198. Gene #48: '4q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 4Q LOSS MUTATED | 49 | 8 | 35 |
| 4Q LOSS WILD-TYPE | 95 | 107 | 104 |
Figure S198. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S199. Gene #49: '5p loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 5P LOSS MUTATED | 46 | 0 | 3 | 2 | 4 |
| 5P LOSS WILD-TYPE | 123 | 305 | 16 | 7 | 33 |
Figure S199. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S200. Gene #49: '5p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 5P LOSS MUTATED | 38 | 5 | 2 |
| 5P LOSS WILD-TYPE | 127 | 84 | 169 |
Figure S200. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S201. Gene #49: '5p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 5P LOSS MUTATED | 4 | 47 | 4 |
| 5P LOSS WILD-TYPE | 147 | 183 | 145 |
Figure S201. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S202. Gene #49: '5p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 5P LOSS MUTATED | 10 | 41 | 4 |
| 5P LOSS WILD-TYPE | 206 | 128 | 141 |
Figure S202. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S203. Gene #49: '5p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 5P LOSS MUTATED | 44 | 5 | 5 |
| 5P LOSS WILD-TYPE | 182 | 138 | 156 |
Figure S203. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S204. Gene #49: '5p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 5P LOSS MUTATED | 2 | 0 | 35 | 17 |
| 5P LOSS WILD-TYPE | 139 | 60 | 88 | 189 |
Figure S204. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.016
Table S205. Gene #49: '5p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 5P LOSS MUTATED | 30 | 10 | 3 |
| 5P LOSS WILD-TYPE | 142 | 86 | 127 |
Figure S205. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S206. Gene #50: '5q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 5Q LOSS MUTATED | 66 | 0 | 2 | 2 | 4 |
| 5Q LOSS WILD-TYPE | 103 | 305 | 17 | 7 | 33 |
Figure S206. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S207. Gene #50: '5q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 5Q LOSS MUTATED | 54 | 6 | 2 |
| 5Q LOSS WILD-TYPE | 111 | 83 | 169 |
Figure S207. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S208. Gene #50: '5q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 5Q LOSS MUTATED | 4 | 65 | 5 |
| 5Q LOSS WILD-TYPE | 147 | 165 | 144 |
Figure S208. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S209. Gene #50: '5q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 5Q LOSS MUTATED | 11 | 57 | 6 |
| 5Q LOSS WILD-TYPE | 205 | 112 | 139 |
Figure S209. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S210. Gene #50: '5q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 5Q LOSS MUTATED | 62 | 6 | 5 |
| 5Q LOSS WILD-TYPE | 164 | 137 | 156 |
Figure S210. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S211. Gene #50: '5q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 5Q LOSS MUTATED | 3 | 0 | 45 | 25 |
| 5Q LOSS WILD-TYPE | 138 | 60 | 78 | 181 |
Figure S211. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00015 (Fisher's exact test), Q value = 0.077
Table S212. Gene #50: '5q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 5Q LOSS MUTATED | 38 | 14 | 7 |
| 5Q LOSS WILD-TYPE | 134 | 82 | 123 |
Figure S212. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 5e-05 (Fisher's exact test), Q value = 0.027
Table S213. Gene #50: '5q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 5Q LOSS MUTATED | 31 | 4 | 24 |
| 5Q LOSS WILD-TYPE | 113 | 111 | 115 |
Figure S213. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S214. Gene #51: '6p loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 6P LOSS MUTATED | 15 | 0 | 2 | 1 | 0 |
| 6P LOSS WILD-TYPE | 154 | 305 | 17 | 8 | 37 |
Figure S214. Get High-res Image Gene #51: '6p loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00036 (Fisher's exact test), Q value = 0.18
Table S215. Gene #51: '6p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 6P LOSS MUTATED | 1 | 16 | 1 |
| 6P LOSS WILD-TYPE | 150 | 214 | 148 |
Figure S215. Get High-res Image Gene #51: '6p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.016
Table S216. Gene #51: '6p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 6P LOSS MUTATED | 3 | 15 | 0 |
| 6P LOSS WILD-TYPE | 213 | 154 | 145 |
Figure S216. Get High-res Image Gene #51: '6p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S217. Gene #52: '6q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 6Q LOSS MUTATED | 22 | 0 | 2 | 1 | 0 |
| 6Q LOSS WILD-TYPE | 147 | 305 | 17 | 8 | 37 |
Figure S217. Get High-res Image Gene #52: '6q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-04 (Fisher's exact test), Q value = 0.052
Table S218. Gene #52: '6q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 6Q LOSS MUTATED | 15 | 4 | 0 |
| 6Q LOSS WILD-TYPE | 150 | 85 | 171 |
Figure S218. Get High-res Image Gene #52: '6q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S219. Gene #52: '6q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 6Q LOSS MUTATED | 1 | 23 | 1 |
| 6Q LOSS WILD-TYPE | 150 | 207 | 148 |
Figure S219. Get High-res Image Gene #52: '6q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S220. Gene #52: '6q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 6Q LOSS MUTATED | 3 | 22 | 0 |
| 6Q LOSS WILD-TYPE | 213 | 147 | 145 |
Figure S220. Get High-res Image Gene #52: '6q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00024 (Fisher's exact test), Q value = 0.12
Table S221. Gene #52: '6q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 6Q LOSS MUTATED | 19 | 3 | 1 |
| 6Q LOSS WILD-TYPE | 207 | 140 | 160 |
Figure S221. Get High-res Image Gene #52: '6q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.016
Table S222. Gene #52: '6q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 6Q LOSS MUTATED | 0 | 0 | 14 | 9 |
| 6Q LOSS WILD-TYPE | 141 | 60 | 109 | 197 |
Figure S222. Get High-res Image Gene #52: '6q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S223. Gene #53: '7p loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 7P LOSS MUTATED | 39 | 3 | 1 | 1 | 0 |
| 7P LOSS WILD-TYPE | 130 | 302 | 18 | 8 | 37 |
Figure S223. Get High-res Image Gene #53: '7p loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00037 (Fisher's exact test), Q value = 0.18
Table S224. Gene #53: '7p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 7P LOSS MUTATED | 24 | 10 | 5 |
| 7P LOSS WILD-TYPE | 141 | 79 | 166 |
Figure S224. Get High-res Image Gene #53: '7p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S225. Gene #53: '7p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 7P LOSS MUTATED | 1 | 39 | 4 |
| 7P LOSS WILD-TYPE | 150 | 191 | 145 |
Figure S225. Get High-res Image Gene #53: '7p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S226. Gene #53: '7p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 7P LOSS MUTATED | 8 | 32 | 4 |
| 7P LOSS WILD-TYPE | 208 | 137 | 141 |
Figure S226. Get High-res Image Gene #53: '7p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S227. Gene #53: '7p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 7P LOSS MUTATED | 36 | 2 | 6 |
| 7P LOSS WILD-TYPE | 190 | 141 | 155 |
Figure S227. Get High-res Image Gene #53: '7p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S228. Gene #53: '7p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 7P LOSS MUTATED | 4 | 0 | 28 | 12 |
| 7P LOSS WILD-TYPE | 137 | 60 | 95 | 194 |
Figure S228. Get High-res Image Gene #53: '7p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S229. Gene #54: '7q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 7Q LOSS MUTATED | 41 | 0 | 0 | 1 | 0 |
| 7Q LOSS WILD-TYPE | 128 | 305 | 19 | 8 | 37 |
Figure S229. Get High-res Image Gene #54: '7q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S230. Gene #54: '7q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 7Q LOSS MUTATED | 29 | 9 | 1 |
| 7Q LOSS WILD-TYPE | 136 | 80 | 170 |
Figure S230. Get High-res Image Gene #54: '7q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S231. Gene #54: '7q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 7Q LOSS MUTATED | 0 | 41 | 1 |
| 7Q LOSS WILD-TYPE | 151 | 189 | 148 |
Figure S231. Get High-res Image Gene #54: '7q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S232. Gene #54: '7q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 7Q LOSS MUTATED | 4 | 36 | 2 |
| 7Q LOSS WILD-TYPE | 212 | 133 | 143 |
Figure S232. Get High-res Image Gene #54: '7q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S233. Gene #54: '7q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 7Q LOSS MUTATED | 39 | 1 | 2 |
| 7Q LOSS WILD-TYPE | 187 | 142 | 159 |
Figure S233. Get High-res Image Gene #54: '7q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S234. Gene #54: '7q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 7Q LOSS MUTATED | 2 | 0 | 32 | 8 |
| 7Q LOSS WILD-TYPE | 139 | 60 | 91 | 198 |
Figure S234. Get High-res Image Gene #54: '7q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00043 (Fisher's exact test), Q value = 0.21
Table S235. Gene #54: '7q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 7Q LOSS MUTATED | 22 | 2 | 13 |
| 7Q LOSS WILD-TYPE | 122 | 113 | 126 |
Figure S235. Get High-res Image Gene #54: '7q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 6e-05 (Fisher's exact test), Q value = 0.032
Table S236. Gene #55: '8p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 14 | 9 | 7 | 7 | 16 |
| 8P LOSS MUTATED | 0 | 5 | 0 | 0 | 0 |
| 8P LOSS WILD-TYPE | 14 | 4 | 7 | 7 | 16 |
Figure S236. Get High-res Image Gene #55: '8p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S237. Gene #55: '8p loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 8P LOSS MUTATED | 75 | 3 | 1 | 1 | 0 |
| 8P LOSS WILD-TYPE | 94 | 302 | 18 | 8 | 37 |
Figure S237. Get High-res Image Gene #55: '8p loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S238. Gene #55: '8p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 8P LOSS MUTATED | 58 | 11 | 2 |
| 8P LOSS WILD-TYPE | 107 | 78 | 169 |
Figure S238. Get High-res Image Gene #55: '8p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S239. Gene #55: '8p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 8P LOSS MUTATED | 3 | 71 | 3 |
| 8P LOSS WILD-TYPE | 148 | 159 | 146 |
Figure S239. Get High-res Image Gene #55: '8p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S240. Gene #55: '8p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 8P LOSS MUTATED | 7 | 66 | 4 |
| 8P LOSS WILD-TYPE | 209 | 103 | 141 |
Figure S240. Get High-res Image Gene #55: '8p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S241. Gene #55: '8p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 8P LOSS MUTATED | 70 | 3 | 4 |
| 8P LOSS WILD-TYPE | 156 | 140 | 157 |
Figure S241. Get High-res Image Gene #55: '8p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S242. Gene #55: '8p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 8P LOSS MUTATED | 5 | 0 | 55 | 17 |
| 8P LOSS WILD-TYPE | 136 | 60 | 68 | 189 |
Figure S242. Get High-res Image Gene #55: '8p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S243. Gene #55: '8p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 8P LOSS MUTATED | 45 | 15 | 6 |
| 8P LOSS WILD-TYPE | 127 | 81 | 124 |
Figure S243. Get High-res Image Gene #55: '8p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S244. Gene #55: '8p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 8P LOSS MUTATED | 41 | 3 | 22 |
| 8P LOSS WILD-TYPE | 103 | 112 | 117 |
Figure S244. Get High-res Image Gene #55: '8p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S245. Gene #56: '8q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 8Q LOSS MUTATED | 23 | 1 | 1 | 0 | 0 |
| 8Q LOSS WILD-TYPE | 146 | 304 | 18 | 9 | 37 |
Figure S245. Get High-res Image Gene #56: '8q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S246. Gene #56: '8q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 8Q LOSS MUTATED | 20 | 3 | 0 |
| 8Q LOSS WILD-TYPE | 145 | 86 | 171 |
Figure S246. Get High-res Image Gene #56: '8q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S247. Gene #56: '8q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 8Q LOSS MUTATED | 0 | 23 | 2 |
| 8Q LOSS WILD-TYPE | 151 | 207 | 147 |
Figure S247. Get High-res Image Gene #56: '8q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S248. Gene #56: '8q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 8Q LOSS MUTATED | 1 | 22 | 2 |
| 8Q LOSS WILD-TYPE | 215 | 147 | 143 |
Figure S248. Get High-res Image Gene #56: '8q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S249. Gene #56: '8q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 8Q LOSS MUTATED | 22 | 0 | 2 |
| 8Q LOSS WILD-TYPE | 204 | 143 | 159 |
Figure S249. Get High-res Image Gene #56: '8q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S250. Gene #56: '8q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 8Q LOSS MUTATED | 2 | 0 | 17 | 5 |
| 8Q LOSS WILD-TYPE | 139 | 60 | 106 | 201 |
Figure S250. Get High-res Image Gene #56: '8q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S251. Gene #57: '9p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 14 | 9 | 7 | 7 | 16 |
| 9P LOSS MUTATED | 2 | 7 | 0 | 0 | 0 |
| 9P LOSS WILD-TYPE | 12 | 2 | 7 | 7 | 16 |
Figure S251. Get High-res Image Gene #57: '9p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S252. Gene #57: '9p loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 9P LOSS MUTATED | 90 | 2 | 6 | 1 | 4 |
| 9P LOSS WILD-TYPE | 79 | 303 | 13 | 8 | 33 |
Figure S252. Get High-res Image Gene #57: '9p loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S253. Gene #57: '9p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 9P LOSS MUTATED | 59 | 20 | 9 |
| 9P LOSS WILD-TYPE | 106 | 69 | 162 |
Figure S253. Get High-res Image Gene #57: '9p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S254. Gene #57: '9p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 9P LOSS MUTATED | 6 | 83 | 13 |
| 9P LOSS WILD-TYPE | 145 | 147 | 136 |
Figure S254. Get High-res Image Gene #57: '9p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S255. Gene #57: '9p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 9P LOSS MUTATED | 15 | 74 | 13 |
| 9P LOSS WILD-TYPE | 201 | 95 | 132 |
Figure S255. Get High-res Image Gene #57: '9p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S256. Gene #57: '9p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 9P LOSS MUTATED | 76 | 10 | 14 |
| 9P LOSS WILD-TYPE | 150 | 133 | 147 |
Figure S256. Get High-res Image Gene #57: '9p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S257. Gene #57: '9p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 9P LOSS MUTATED | 12 | 2 | 61 | 25 |
| 9P LOSS WILD-TYPE | 129 | 58 | 62 | 181 |
Figure S257. Get High-res Image Gene #57: '9p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.016
Table S258. Gene #58: '9q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 14 | 17 | 12 | 10 |
| 9Q LOSS MUTATED | 0 | 9 | 0 | 0 |
| 9Q LOSS WILD-TYPE | 14 | 8 | 12 | 10 |
Figure S258. Get High-res Image Gene #58: '9q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S259. Gene #58: '9q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 14 | 9 | 7 | 7 | 16 |
| 9Q LOSS MUTATED | 2 | 7 | 0 | 0 | 0 |
| 9Q LOSS WILD-TYPE | 12 | 2 | 7 | 7 | 16 |
Figure S259. Get High-res Image Gene #58: '9q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S260. Gene #58: '9q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 9Q LOSS MUTATED | 105 | 3 | 7 | 2 | 5 |
| 9Q LOSS WILD-TYPE | 64 | 302 | 12 | 7 | 32 |
Figure S260. Get High-res Image Gene #58: '9q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S261. Gene #58: '9q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 9Q LOSS MUTATED | 71 | 22 | 13 |
| 9Q LOSS WILD-TYPE | 94 | 67 | 158 |
Figure S261. Get High-res Image Gene #58: '9q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00038 (Fisher's exact test), Q value = 0.19
Table S262. Gene #58: '9q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 41 | 37 | 39 | 12 | 41 | 24 |
| 9Q LOSS MUTATED | 6 | 12 | 1 | 2 | 1 | 6 |
| 9Q LOSS WILD-TYPE | 35 | 25 | 38 | 10 | 40 | 18 |
Figure S262. Get High-res Image Gene #58: '9q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S263. Gene #58: '9q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 9Q LOSS MUTATED | 8 | 97 | 15 |
| 9Q LOSS WILD-TYPE | 143 | 133 | 134 |
Figure S263. Get High-res Image Gene #58: '9q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S264. Gene #58: '9q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 9Q LOSS MUTATED | 20 | 85 | 15 |
| 9Q LOSS WILD-TYPE | 196 | 84 | 130 |
Figure S264. Get High-res Image Gene #58: '9q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S265. Gene #58: '9q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 9Q LOSS MUTATED | 89 | 14 | 16 |
| 9Q LOSS WILD-TYPE | 137 | 129 | 145 |
Figure S265. Get High-res Image Gene #58: '9q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S266. Gene #58: '9q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 9Q LOSS MUTATED | 16 | 2 | 66 | 35 |
| 9Q LOSS WILD-TYPE | 125 | 58 | 57 | 171 |
Figure S266. Get High-res Image Gene #58: '9q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S267. Gene #58: '9q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 9Q LOSS MUTATED | 55 | 15 | 33 |
| 9Q LOSS WILD-TYPE | 89 | 100 | 106 |
Figure S267. Get High-res Image Gene #58: '9q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S268. Gene #59: '10p loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 10P LOSS MUTATED | 42 | 0 | 1 | 0 | 0 |
| 10P LOSS WILD-TYPE | 127 | 305 | 18 | 9 | 37 |
Figure S268. Get High-res Image Gene #59: '10p loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S269. Gene #59: '10p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 10P LOSS MUTATED | 31 | 5 | 1 |
| 10P LOSS WILD-TYPE | 134 | 84 | 170 |
Figure S269. Get High-res Image Gene #59: '10p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S270. Gene #59: '10p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 10P LOSS MUTATED | 1 | 38 | 3 |
| 10P LOSS WILD-TYPE | 150 | 192 | 146 |
Figure S270. Get High-res Image Gene #59: '10p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S271. Gene #59: '10p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 10P LOSS MUTATED | 5 | 34 | 3 |
| 10P LOSS WILD-TYPE | 211 | 135 | 142 |
Figure S271. Get High-res Image Gene #59: '10p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S272. Gene #59: '10p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 10P LOSS MUTATED | 36 | 3 | 2 |
| 10P LOSS WILD-TYPE | 190 | 140 | 159 |
Figure S272. Get High-res Image Gene #59: '10p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S273. Gene #59: '10p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 10P LOSS MUTATED | 2 | 1 | 27 | 11 |
| 10P LOSS WILD-TYPE | 139 | 59 | 96 | 195 |
Figure S273. Get High-res Image Gene #59: '10p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S274. Gene #60: '10q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 10Q LOSS MUTATED | 38 | 1 | 1 | 0 | 0 |
| 10Q LOSS WILD-TYPE | 131 | 304 | 18 | 9 | 37 |
Figure S274. Get High-res Image Gene #60: '10q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S275. Gene #60: '10q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 10Q LOSS MUTATED | 28 | 6 | 1 |
| 10Q LOSS WILD-TYPE | 137 | 83 | 170 |
Figure S275. Get High-res Image Gene #60: '10q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S276. Gene #60: '10q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 10Q LOSS MUTATED | 1 | 34 | 4 |
| 10Q LOSS WILD-TYPE | 150 | 196 | 145 |
Figure S276. Get High-res Image Gene #60: '10q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S277. Gene #60: '10q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 10Q LOSS MUTATED | 6 | 29 | 4 |
| 10Q LOSS WILD-TYPE | 210 | 140 | 141 |
Figure S277. Get High-res Image Gene #60: '10q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S278. Gene #60: '10q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 10Q LOSS MUTATED | 32 | 4 | 3 |
| 10Q LOSS WILD-TYPE | 194 | 139 | 158 |
Figure S278. Get High-res Image Gene #60: '10q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S279. Gene #60: '10q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 10Q LOSS MUTATED | 3 | 1 | 24 | 11 |
| 10Q LOSS WILD-TYPE | 138 | 59 | 99 | 195 |
Figure S279. Get High-res Image Gene #60: '10q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S280. Gene #61: '11p loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 11P LOSS MUTATED | 66 | 0 | 3 | 4 | 2 |
| 11P LOSS WILD-TYPE | 103 | 305 | 16 | 5 | 35 |
Figure S280. Get High-res Image Gene #61: '11p loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S281. Gene #61: '11p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 11P LOSS MUTATED | 53 | 12 | 5 |
| 11P LOSS WILD-TYPE | 112 | 77 | 166 |
Figure S281. Get High-res Image Gene #61: '11p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S282. Gene #61: '11p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 11P LOSS MUTATED | 3 | 64 | 7 |
| 11P LOSS WILD-TYPE | 148 | 166 | 142 |
Figure S282. Get High-res Image Gene #61: '11p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S283. Gene #61: '11p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 11P LOSS MUTATED | 13 | 54 | 7 |
| 11P LOSS WILD-TYPE | 203 | 115 | 138 |
Figure S283. Get High-res Image Gene #61: '11p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S284. Gene #61: '11p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 11P LOSS MUTATED | 58 | 8 | 8 |
| 11P LOSS WILD-TYPE | 168 | 135 | 153 |
Figure S284. Get High-res Image Gene #61: '11p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S285. Gene #61: '11p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 11P LOSS MUTATED | 7 | 0 | 43 | 24 |
| 11P LOSS WILD-TYPE | 134 | 60 | 80 | 182 |
Figure S285. Get High-res Image Gene #61: '11p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00037 (Fisher's exact test), Q value = 0.18
Table S286. Gene #61: '11p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 11P LOSS MUTATED | 44 | 15 | 11 |
| 11P LOSS WILD-TYPE | 128 | 81 | 119 |
Figure S286. Get High-res Image Gene #61: '11p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S287. Gene #61: '11p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 11P LOSS MUTATED | 44 | 8 | 18 |
| 11P LOSS WILD-TYPE | 100 | 107 | 121 |
Figure S287. Get High-res Image Gene #61: '11p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S288. Gene #62: '11q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 11Q LOSS MUTATED | 62 | 0 | 4 | 4 | 2 |
| 11Q LOSS WILD-TYPE | 107 | 305 | 15 | 5 | 35 |
Figure S288. Get High-res Image Gene #62: '11q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S289. Gene #62: '11q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 11Q LOSS MUTATED | 52 | 11 | 6 |
| 11Q LOSS WILD-TYPE | 113 | 78 | 165 |
Figure S289. Get High-res Image Gene #62: '11q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S290. Gene #62: '11q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 11Q LOSS MUTATED | 3 | 59 | 9 |
| 11Q LOSS WILD-TYPE | 148 | 171 | 140 |
Figure S290. Get High-res Image Gene #62: '11q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S291. Gene #62: '11q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 11Q LOSS MUTATED | 10 | 53 | 8 |
| 11Q LOSS WILD-TYPE | 206 | 116 | 137 |
Figure S291. Get High-res Image Gene #62: '11q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S292. Gene #62: '11q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 11Q LOSS MUTATED | 55 | 8 | 9 |
| 11Q LOSS WILD-TYPE | 171 | 135 | 152 |
Figure S292. Get High-res Image Gene #62: '11q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S293. Gene #62: '11q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 11Q LOSS MUTATED | 8 | 0 | 44 | 20 |
| 11Q LOSS WILD-TYPE | 133 | 60 | 79 | 186 |
Figure S293. Get High-res Image Gene #62: '11q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S294. Gene #62: '11q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 11Q LOSS MUTATED | 49 | 10 | 10 |
| 11Q LOSS WILD-TYPE | 123 | 86 | 120 |
Figure S294. Get High-res Image Gene #62: '11q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S295. Gene #62: '11q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 11Q LOSS MUTATED | 46 | 8 | 15 |
| 11Q LOSS WILD-TYPE | 98 | 107 | 124 |
Figure S295. Get High-res Image Gene #62: '11q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S296. Gene #63: '12p loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 12P LOSS MUTATED | 41 | 0 | 0 | 0 | 2 |
| 12P LOSS WILD-TYPE | 128 | 305 | 19 | 9 | 35 |
Figure S296. Get High-res Image Gene #63: '12p loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S297. Gene #63: '12p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 12P LOSS MUTATED | 29 | 3 | 4 |
| 12P LOSS WILD-TYPE | 136 | 86 | 167 |
Figure S297. Get High-res Image Gene #63: '12p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S298. Gene #63: '12p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 12P LOSS MUTATED | 0 | 38 | 5 |
| 12P LOSS WILD-TYPE | 151 | 192 | 144 |
Figure S298. Get High-res Image Gene #63: '12p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S299. Gene #63: '12p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 12P LOSS MUTATED | 3 | 34 | 6 |
| 12P LOSS WILD-TYPE | 213 | 135 | 139 |
Figure S299. Get High-res Image Gene #63: '12p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S300. Gene #63: '12p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 12P LOSS MUTATED | 35 | 2 | 4 |
| 12P LOSS WILD-TYPE | 191 | 141 | 157 |
Figure S300. Get High-res Image Gene #63: '12p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S301. Gene #63: '12p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 12P LOSS MUTATED | 3 | 0 | 28 | 10 |
| 12P LOSS WILD-TYPE | 138 | 60 | 95 | 196 |
Figure S301. Get High-res Image Gene #63: '12p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00037 (Fisher's exact test), Q value = 0.18
Table S302. Gene #63: '12p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 12P LOSS MUTATED | 26 | 5 | 4 |
| 12P LOSS WILD-TYPE | 146 | 91 | 126 |
Figure S302. Get High-res Image Gene #63: '12p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S303. Gene #64: '12q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 12Q LOSS MUTATED | 34 | 0 | 0 | 0 | 2 |
| 12Q LOSS WILD-TYPE | 135 | 305 | 19 | 9 | 35 |
Figure S303. Get High-res Image Gene #64: '12q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S304. Gene #64: '12q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 12Q LOSS MUTATED | 27 | 1 | 2 |
| 12Q LOSS WILD-TYPE | 138 | 88 | 169 |
Figure S304. Get High-res Image Gene #64: '12q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S305. Gene #64: '12q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 12Q LOSS MUTATED | 0 | 32 | 3 |
| 12Q LOSS WILD-TYPE | 151 | 198 | 146 |
Figure S305. Get High-res Image Gene #64: '12q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S306. Gene #64: '12q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 12Q LOSS MUTATED | 1 | 30 | 4 |
| 12Q LOSS WILD-TYPE | 215 | 139 | 141 |
Figure S306. Get High-res Image Gene #64: '12q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S307. Gene #64: '12q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 12Q LOSS MUTATED | 29 | 3 | 2 |
| 12Q LOSS WILD-TYPE | 197 | 140 | 159 |
Figure S307. Get High-res Image Gene #64: '12q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S308. Gene #64: '12q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 12Q LOSS MUTATED | 1 | 0 | 24 | 9 |
| 12Q LOSS WILD-TYPE | 140 | 60 | 99 | 197 |
Figure S308. Get High-res Image Gene #64: '12q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 6e-05 (Fisher's exact test), Q value = 0.032
Table S309. Gene #64: '12q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 12Q LOSS MUTATED | 24 | 3 | 2 |
| 12Q LOSS WILD-TYPE | 148 | 93 | 128 |
Figure S309. Get High-res Image Gene #64: '12q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 4e-04 (Fisher's exact test), Q value = 0.19
Table S310. Gene #64: '12q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 12Q LOSS MUTATED | 20 | 2 | 7 |
| 12Q LOSS WILD-TYPE | 124 | 113 | 132 |
Figure S310. Get High-res Image Gene #64: '12q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S311. Gene #65: '13q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 13Q LOSS MUTATED | 71 | 6 | 8 | 3 | 5 |
| 13Q LOSS WILD-TYPE | 98 | 299 | 11 | 6 | 32 |
Figure S311. Get High-res Image Gene #65: '13q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S312. Gene #65: '13q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 13Q LOSS MUTATED | 51 | 17 | 13 |
| 13Q LOSS WILD-TYPE | 114 | 72 | 158 |
Figure S312. Get High-res Image Gene #65: '13q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S313. Gene #65: '13q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 13Q LOSS MUTATED | 8 | 67 | 16 |
| 13Q LOSS WILD-TYPE | 143 | 163 | 133 |
Figure S313. Get High-res Image Gene #65: '13q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S314. Gene #65: '13q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 13Q LOSS MUTATED | 26 | 50 | 15 |
| 13Q LOSS WILD-TYPE | 190 | 119 | 130 |
Figure S314. Get High-res Image Gene #65: '13q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S315. Gene #65: '13q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 13Q LOSS MUTATED | 61 | 17 | 14 |
| 13Q LOSS WILD-TYPE | 165 | 126 | 147 |
Figure S315. Get High-res Image Gene #65: '13q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.016
Table S316. Gene #65: '13q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 13Q LOSS MUTATED | 13 | 5 | 38 | 36 |
| 13Q LOSS WILD-TYPE | 128 | 55 | 85 | 170 |
Figure S316. Get High-res Image Gene #65: '13q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00052 (Fisher's exact test), Q value = 0.25
Table S317. Gene #66: '14q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 14 | 9 | 7 | 7 | 16 |
| 14Q LOSS MUTATED | 1 | 5 | 0 | 0 | 0 |
| 14Q LOSS WILD-TYPE | 13 | 4 | 7 | 7 | 16 |
Figure S317. Get High-res Image Gene #66: '14q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S318. Gene #66: '14q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 14Q LOSS MUTATED | 54 | 0 | 2 | 3 | 2 |
| 14Q LOSS WILD-TYPE | 115 | 305 | 17 | 6 | 35 |
Figure S318. Get High-res Image Gene #66: '14q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S319. Gene #66: '14q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 14Q LOSS MUTATED | 40 | 7 | 1 |
| 14Q LOSS WILD-TYPE | 125 | 82 | 170 |
Figure S319. Get High-res Image Gene #66: '14q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S320. Gene #66: '14q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 14Q LOSS MUTATED | 3 | 53 | 4 |
| 14Q LOSS WILD-TYPE | 148 | 177 | 145 |
Figure S320. Get High-res Image Gene #66: '14q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S321. Gene #66: '14q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 14Q LOSS MUTATED | 8 | 48 | 4 |
| 14Q LOSS WILD-TYPE | 208 | 121 | 141 |
Figure S321. Get High-res Image Gene #66: '14q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S322. Gene #66: '14q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 14Q LOSS MUTATED | 50 | 7 | 2 |
| 14Q LOSS WILD-TYPE | 176 | 136 | 159 |
Figure S322. Get High-res Image Gene #66: '14q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S323. Gene #66: '14q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 14Q LOSS MUTATED | 2 | 1 | 39 | 17 |
| 14Q LOSS WILD-TYPE | 139 | 59 | 84 | 189 |
Figure S323. Get High-res Image Gene #66: '14q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S324. Gene #66: '14q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 14Q LOSS MUTATED | 31 | 3 | 13 |
| 14Q LOSS WILD-TYPE | 113 | 112 | 126 |
Figure S324. Get High-res Image Gene #66: '14q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 6e-05 (Fisher's exact test), Q value = 0.032
Table S325. Gene #67: '15q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 14 | 9 | 7 | 7 | 16 |
| 15Q LOSS MUTATED | 1 | 6 | 0 | 0 | 0 |
| 15Q LOSS WILD-TYPE | 13 | 3 | 7 | 7 | 16 |
Figure S325. Get High-res Image Gene #67: '15q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S326. Gene #67: '15q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 15Q LOSS MUTATED | 91 | 4 | 6 | 5 | 3 |
| 15Q LOSS WILD-TYPE | 78 | 301 | 13 | 4 | 34 |
Figure S326. Get High-res Image Gene #67: '15q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S327. Gene #67: '15q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 15Q LOSS MUTATED | 70 | 18 | 8 |
| 15Q LOSS WILD-TYPE | 95 | 71 | 163 |
Figure S327. Get High-res Image Gene #67: '15q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S328. Gene #67: '15q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 15Q LOSS MUTATED | 6 | 94 | 9 |
| 15Q LOSS WILD-TYPE | 145 | 136 | 140 |
Figure S328. Get High-res Image Gene #67: '15q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S329. Gene #67: '15q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 15Q LOSS MUTATED | 21 | 80 | 8 |
| 15Q LOSS WILD-TYPE | 195 | 89 | 137 |
Figure S329. Get High-res Image Gene #67: '15q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S330. Gene #67: '15q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 15Q LOSS MUTATED | 87 | 12 | 8 |
| 15Q LOSS WILD-TYPE | 139 | 131 | 153 |
Figure S330. Get High-res Image Gene #67: '15q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S331. Gene #67: '15q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 15Q LOSS MUTATED | 7 | 1 | 61 | 38 |
| 15Q LOSS WILD-TYPE | 134 | 59 | 62 | 168 |
Figure S331. Get High-res Image Gene #67: '15q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S332. Gene #67: '15q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 15Q LOSS MUTATED | 58 | 23 | 13 |
| 15Q LOSS WILD-TYPE | 114 | 73 | 117 |
Figure S332. Get High-res Image Gene #67: '15q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S333. Gene #67: '15q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 15Q LOSS MUTATED | 55 | 8 | 31 |
| 15Q LOSS WILD-TYPE | 89 | 107 | 108 |
Figure S333. Get High-res Image Gene #67: '15q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S334. Gene #68: '16p loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 16P LOSS MUTATED | 85 | 4 | 4 | 1 | 3 |
| 16P LOSS WILD-TYPE | 84 | 301 | 15 | 8 | 34 |
Figure S334. Get High-res Image Gene #68: '16p loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S335. Gene #68: '16p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 16P LOSS MUTATED | 61 | 20 | 6 |
| 16P LOSS WILD-TYPE | 104 | 69 | 165 |
Figure S335. Get High-res Image Gene #68: '16p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S336. Gene #68: '16p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 16P LOSS MUTATED | 4 | 84 | 8 |
| 16P LOSS WILD-TYPE | 147 | 146 | 141 |
Figure S336. Get High-res Image Gene #68: '16p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S337. Gene #68: '16p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 16P LOSS MUTATED | 18 | 70 | 8 |
| 16P LOSS WILD-TYPE | 198 | 99 | 137 |
Figure S337. Get High-res Image Gene #68: '16p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S338. Gene #68: '16p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 16P LOSS MUTATED | 75 | 10 | 9 |
| 16P LOSS WILD-TYPE | 151 | 133 | 152 |
Figure S338. Get High-res Image Gene #68: '16p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S339. Gene #68: '16p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 16P LOSS MUTATED | 7 | 2 | 56 | 29 |
| 16P LOSS WILD-TYPE | 134 | 58 | 67 | 177 |
Figure S339. Get High-res Image Gene #68: '16p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S340. Gene #68: '16p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 16P LOSS MUTATED | 46 | 7 | 33 |
| 16P LOSS WILD-TYPE | 98 | 108 | 106 |
Figure S340. Get High-res Image Gene #68: '16p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S341. Gene #69: '16q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 16Q LOSS MUTATED | 112 | 14 | 7 | 1 | 4 |
| 16Q LOSS WILD-TYPE | 57 | 291 | 12 | 8 | 33 |
Figure S341. Get High-res Image Gene #69: '16q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S342. Gene #69: '16q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 16Q LOSS MUTATED | 80 | 26 | 15 |
| 16Q LOSS WILD-TYPE | 85 | 63 | 156 |
Figure S342. Get High-res Image Gene #69: '16q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S343. Gene #69: '16q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 16Q LOSS MUTATED | 14 | 110 | 14 |
| 16Q LOSS WILD-TYPE | 137 | 120 | 135 |
Figure S343. Get High-res Image Gene #69: '16q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S344. Gene #69: '16q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 16Q LOSS MUTATED | 32 | 93 | 13 |
| 16Q LOSS WILD-TYPE | 184 | 76 | 132 |
Figure S344. Get High-res Image Gene #69: '16q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S345. Gene #69: '16q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 16Q LOSS MUTATED | 98 | 21 | 15 |
| 16Q LOSS WILD-TYPE | 128 | 122 | 146 |
Figure S345. Get High-res Image Gene #69: '16q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S346. Gene #69: '16q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 16Q LOSS MUTATED | 13 | 7 | 73 | 41 |
| 16Q LOSS WILD-TYPE | 128 | 53 | 50 | 165 |
Figure S346. Get High-res Image Gene #69: '16q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00023 (Fisher's exact test), Q value = 0.12
Table S347. Gene #69: '16q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 16Q LOSS MUTATED | 66 | 30 | 22 |
| 16Q LOSS WILD-TYPE | 106 | 66 | 108 |
Figure S347. Get High-res Image Gene #69: '16q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S348. Gene #69: '16q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 16Q LOSS MUTATED | 61 | 13 | 44 |
| 16Q LOSS WILD-TYPE | 83 | 102 | 95 |
Figure S348. Get High-res Image Gene #69: '16q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00021 (Fisher's exact test), Q value = 0.11
Table S349. Gene #70: '17p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 14 | 9 | 7 | 7 | 16 |
| 17P LOSS MUTATED | 1 | 6 | 1 | 0 | 0 |
| 17P LOSS WILD-TYPE | 13 | 3 | 6 | 7 | 16 |
Figure S349. Get High-res Image Gene #70: '17p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S350. Gene #70: '17p loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 17P LOSS MUTATED | 120 | 3 | 4 | 1 | 2 |
| 17P LOSS WILD-TYPE | 49 | 302 | 15 | 8 | 35 |
Figure S350. Get High-res Image Gene #70: '17p loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S351. Gene #70: '17p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 17P LOSS MUTATED | 83 | 21 | 11 |
| 17P LOSS WILD-TYPE | 82 | 68 | 160 |
Figure S351. Get High-res Image Gene #70: '17p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S352. Gene #70: '17p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 17P LOSS MUTATED | 4 | 108 | 15 |
| 17P LOSS WILD-TYPE | 147 | 122 | 134 |
Figure S352. Get High-res Image Gene #70: '17p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S353. Gene #70: '17p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 17P LOSS MUTATED | 19 | 92 | 16 |
| 17P LOSS WILD-TYPE | 197 | 77 | 129 |
Figure S353. Get High-res Image Gene #70: '17p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S354. Gene #70: '17p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 17P LOSS MUTATED | 102 | 9 | 16 |
| 17P LOSS WILD-TYPE | 124 | 134 | 145 |
Figure S354. Get High-res Image Gene #70: '17p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S355. Gene #70: '17p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 17P LOSS MUTATED | 16 | 1 | 74 | 36 |
| 17P LOSS WILD-TYPE | 125 | 59 | 49 | 170 |
Figure S355. Get High-res Image Gene #70: '17p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S356. Gene #70: '17p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 172 | 96 | 130 |
| 17P LOSS MUTATED | 66 | 28 | 16 |
| 17P LOSS WILD-TYPE | 106 | 68 | 114 |
Figure S356. Get High-res Image Gene #70: '17p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S357. Gene #70: '17p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 17P LOSS MUTATED | 59 | 16 | 35 |
| 17P LOSS WILD-TYPE | 85 | 99 | 104 |
Figure S357. Get High-res Image Gene #70: '17p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.011
Table S358. Gene #71: '17q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 14 | 9 | 7 | 7 | 16 |
| 17Q LOSS MUTATED | 0 | 6 | 0 | 0 | 0 |
| 17Q LOSS WILD-TYPE | 14 | 3 | 7 | 7 | 16 |
Figure S358. Get High-res Image Gene #71: '17q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S359. Gene #71: '17q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 17Q LOSS MUTATED | 84 | 2 | 4 | 1 | 2 |
| 17Q LOSS WILD-TYPE | 85 | 303 | 15 | 8 | 35 |
Figure S359. Get High-res Image Gene #71: '17q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S360. Gene #71: '17q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 17Q LOSS MUTATED | 54 | 18 | 10 |
| 17Q LOSS WILD-TYPE | 111 | 71 | 161 |
Figure S360. Get High-res Image Gene #71: '17q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S361. Gene #71: '17q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 17Q LOSS MUTATED | 4 | 74 | 13 |
| 17Q LOSS WILD-TYPE | 147 | 156 | 136 |
Figure S361. Get High-res Image Gene #71: '17q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S362. Gene #71: '17q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 17Q LOSS MUTATED | 17 | 60 | 14 |
| 17Q LOSS WILD-TYPE | 199 | 109 | 131 |
Figure S362. Get High-res Image Gene #71: '17q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S363. Gene #71: '17q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 17Q LOSS MUTATED | 68 | 8 | 14 |
| 17Q LOSS WILD-TYPE | 158 | 135 | 147 |
Figure S363. Get High-res Image Gene #71: '17q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S364. Gene #71: '17q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 17Q LOSS MUTATED | 12 | 1 | 48 | 29 |
| 17Q LOSS WILD-TYPE | 129 | 59 | 75 | 177 |
Figure S364. Get High-res Image Gene #71: '17q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00048 (Fisher's exact test), Q value = 0.23
Table S365. Gene #71: '17q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 17Q LOSS MUTATED | 44 | 14 | 22 |
| 17Q LOSS WILD-TYPE | 100 | 101 | 117 |
Figure S365. Get High-res Image Gene #71: '17q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S366. Gene #72: '18p loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 18P LOSS MUTATED | 38 | 1 | 6 | 4 | 3 |
| 18P LOSS WILD-TYPE | 131 | 304 | 13 | 5 | 34 |
Figure S366. Get High-res Image Gene #72: '18p loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S367. Gene #72: '18p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 18P LOSS MUTATED | 34 | 8 | 4 |
| 18P LOSS WILD-TYPE | 131 | 81 | 167 |
Figure S367. Get High-res Image Gene #72: '18p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S368. Gene #72: '18p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 18P LOSS MUTATED | 5 | 40 | 7 |
| 18P LOSS WILD-TYPE | 146 | 190 | 142 |
Figure S368. Get High-res Image Gene #72: '18p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-04 (Fisher's exact test), Q value = 0.052
Table S369. Gene #72: '18p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 18P LOSS MUTATED | 36 | 8 | 7 |
| 18P LOSS WILD-TYPE | 190 | 135 | 154 |
Figure S369. Get High-res Image Gene #72: '18p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00027 (Fisher's exact test), Q value = 0.13
Table S370. Gene #72: '18p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 18P LOSS MUTATED | 5 | 2 | 22 | 22 |
| 18P LOSS WILD-TYPE | 136 | 58 | 101 | 184 |
Figure S370. Get High-res Image Gene #72: '18p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S371. Gene #73: '18q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 18Q LOSS MUTATED | 50 | 1 | 7 | 4 | 3 |
| 18Q LOSS WILD-TYPE | 119 | 304 | 12 | 5 | 34 |
Figure S371. Get High-res Image Gene #73: '18q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S372. Gene #73: '18q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 18Q LOSS MUTATED | 42 | 11 | 6 |
| 18Q LOSS WILD-TYPE | 123 | 78 | 165 |
Figure S372. Get High-res Image Gene #73: '18q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S373. Gene #73: '18q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 18Q LOSS MUTATED | 5 | 52 | 8 |
| 18Q LOSS WILD-TYPE | 146 | 178 | 141 |
Figure S373. Get High-res Image Gene #73: '18q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S374. Gene #73: '18q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 18Q LOSS MUTATED | 19 | 38 | 8 |
| 18Q LOSS WILD-TYPE | 197 | 131 | 137 |
Figure S374. Get High-res Image Gene #73: '18q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S375. Gene #73: '18q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 18Q LOSS MUTATED | 48 | 7 | 9 |
| 18Q LOSS WILD-TYPE | 178 | 136 | 152 |
Figure S375. Get High-res Image Gene #73: '18q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S376. Gene #73: '18q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 18Q LOSS MUTATED | 6 | 1 | 35 | 22 |
| 18Q LOSS WILD-TYPE | 135 | 59 | 88 | 184 |
Figure S376. Get High-res Image Gene #73: '18q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S377. Gene #74: '19p loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 19P LOSS MUTATED | 51 | 0 | 5 | 2 | 1 |
| 19P LOSS WILD-TYPE | 118 | 305 | 14 | 7 | 36 |
Figure S377. Get High-res Image Gene #74: '19p loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S378. Gene #74: '19p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 19P LOSS MUTATED | 45 | 6 | 2 |
| 19P LOSS WILD-TYPE | 120 | 83 | 169 |
Figure S378. Get High-res Image Gene #74: '19p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S379. Gene #74: '19p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 19P LOSS MUTATED | 4 | 48 | 5 |
| 19P LOSS WILD-TYPE | 147 | 182 | 144 |
Figure S379. Get High-res Image Gene #74: '19p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S380. Gene #74: '19p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 19P LOSS MUTATED | 12 | 41 | 4 |
| 19P LOSS WILD-TYPE | 204 | 128 | 141 |
Figure S380. Get High-res Image Gene #74: '19p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S381. Gene #74: '19p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 19P LOSS MUTATED | 46 | 5 | 6 |
| 19P LOSS WILD-TYPE | 180 | 138 | 155 |
Figure S381. Get High-res Image Gene #74: '19p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S382. Gene #74: '19p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 19P LOSS MUTATED | 5 | 1 | 35 | 16 |
| 19P LOSS WILD-TYPE | 136 | 59 | 88 | 190 |
Figure S382. Get High-res Image Gene #74: '19p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S383. Gene #74: '19p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 19P LOSS MUTATED | 37 | 3 | 11 |
| 19P LOSS WILD-TYPE | 107 | 112 | 128 |
Figure S383. Get High-res Image Gene #74: '19p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S384. Gene #75: '19q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 19Q LOSS MUTATED | 49 | 1 | 4 | 1 | 1 |
| 19Q LOSS WILD-TYPE | 120 | 304 | 15 | 8 | 36 |
Figure S384. Get High-res Image Gene #75: '19q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S385. Gene #75: '19q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 19Q LOSS MUTATED | 37 | 8 | 4 |
| 19Q LOSS WILD-TYPE | 128 | 81 | 167 |
Figure S385. Get High-res Image Gene #75: '19q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S386. Gene #75: '19q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 19Q LOSS MUTATED | 4 | 44 | 6 |
| 19Q LOSS WILD-TYPE | 147 | 186 | 143 |
Figure S386. Get High-res Image Gene #75: '19q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S387. Gene #75: '19q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 19Q LOSS MUTATED | 10 | 39 | 5 |
| 19Q LOSS WILD-TYPE | 206 | 130 | 140 |
Figure S387. Get High-res Image Gene #75: '19q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S388. Gene #75: '19q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 19Q LOSS MUTATED | 42 | 5 | 7 |
| 19Q LOSS WILD-TYPE | 184 | 138 | 154 |
Figure S388. Get High-res Image Gene #75: '19q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S389. Gene #75: '19q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 19Q LOSS MUTATED | 6 | 1 | 28 | 19 |
| 19Q LOSS WILD-TYPE | 135 | 59 | 95 | 187 |
Figure S389. Get High-res Image Gene #75: '19q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.016
Table S390. Gene #75: '19q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 19Q LOSS MUTATED | 31 | 4 | 12 |
| 19Q LOSS WILD-TYPE | 113 | 111 | 127 |
Figure S390. Get High-res Image Gene #75: '19q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S391. Gene #76: '20p loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 20P LOSS MUTATED | 16 | 1 | 1 | 1 | 0 |
| 20P LOSS WILD-TYPE | 153 | 304 | 18 | 8 | 37 |
Figure S391. Get High-res Image Gene #76: '20p loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00043 (Fisher's exact test), Q value = 0.21
Table S392. Gene #77: '20q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 20Q LOSS MUTATED | 7 | 0 | 1 | 1 | 0 |
| 20Q LOSS WILD-TYPE | 162 | 305 | 18 | 8 | 37 |
Figure S392. Get High-res Image Gene #77: '20q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S393. Gene #78: '21q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 21Q LOSS MUTATED | 44 | 4 | 2 | 4 | 0 |
| 21Q LOSS WILD-TYPE | 125 | 301 | 17 | 5 | 37 |
Figure S393. Get High-res Image Gene #78: '21q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S394. Gene #78: '21q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 21Q LOSS MUTATED | 34 | 7 | 5 |
| 21Q LOSS WILD-TYPE | 131 | 82 | 166 |
Figure S394. Get High-res Image Gene #78: '21q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S395. Gene #78: '21q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 21Q LOSS MUTATED | 7 | 45 | 1 |
| 21Q LOSS WILD-TYPE | 144 | 185 | 148 |
Figure S395. Get High-res Image Gene #78: '21q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S396. Gene #78: '21q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 21Q LOSS MUTATED | 15 | 36 | 2 |
| 21Q LOSS WILD-TYPE | 201 | 133 | 143 |
Figure S396. Get High-res Image Gene #78: '21q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S397. Gene #78: '21q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 21Q LOSS MUTATED | 44 | 6 | 2 |
| 21Q LOSS WILD-TYPE | 182 | 137 | 159 |
Figure S397. Get High-res Image Gene #78: '21q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S398. Gene #78: '21q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 21Q LOSS MUTATED | 2 | 2 | 30 | 18 |
| 21Q LOSS WILD-TYPE | 139 | 58 | 93 | 188 |
Figure S398. Get High-res Image Gene #78: '21q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S399. Gene #78: '21q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 21Q LOSS MUTATED | 28 | 1 | 17 |
| 21Q LOSS WILD-TYPE | 116 | 114 | 122 |
Figure S399. Get High-res Image Gene #78: '21q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S400. Gene #79: '22q loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| 22Q LOSS MUTATED | 96 | 3 | 4 | 3 | 3 |
| 22Q LOSS WILD-TYPE | 73 | 302 | 15 | 6 | 34 |
Figure S400. Get High-res Image Gene #79: '22q loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S401. Gene #79: '22q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| 22Q LOSS MUTATED | 67 | 20 | 13 |
| 22Q LOSS WILD-TYPE | 98 | 69 | 158 |
Figure S401. Get High-res Image Gene #79: '22q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S402. Gene #79: '22q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| 22Q LOSS MUTATED | 6 | 83 | 17 |
| 22Q LOSS WILD-TYPE | 145 | 147 | 132 |
Figure S402. Get High-res Image Gene #79: '22q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S403. Gene #79: '22q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| 22Q LOSS MUTATED | 23 | 67 | 16 |
| 22Q LOSS WILD-TYPE | 193 | 102 | 129 |
Figure S403. Get High-res Image Gene #79: '22q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S404. Gene #79: '22q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| 22Q LOSS MUTATED | 80 | 10 | 17 |
| 22Q LOSS WILD-TYPE | 146 | 133 | 144 |
Figure S404. Get High-res Image Gene #79: '22q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S405. Gene #79: '22q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| 22Q LOSS MUTATED | 15 | 1 | 55 | 36 |
| 22Q LOSS WILD-TYPE | 126 | 59 | 68 | 170 |
Figure S405. Get High-res Image Gene #79: '22q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-04 (Fisher's exact test), Q value = 0.1
Table S406. Gene #79: '22q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| 22Q LOSS MUTATED | 50 | 15 | 29 |
| 22Q LOSS WILD-TYPE | 94 | 100 | 110 |
Figure S406. Get High-res Image Gene #79: '22q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S407. Gene #80: 'xq loss' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 169 | 305 | 19 | 9 | 37 |
| XQ LOSS MUTATED | 63 | 1 | 3 | 2 | 1 |
| XQ LOSS WILD-TYPE | 106 | 304 | 16 | 7 | 36 |
Figure S407. Get High-res Image Gene #80: 'xq loss' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S408. Gene #80: 'xq loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 165 | 89 | 171 |
| XQ LOSS MUTATED | 42 | 11 | 6 |
| XQ LOSS WILD-TYPE | 123 | 78 | 165 |
Figure S408. Get High-res Image Gene #80: 'xq loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00013 (Fisher's exact test), Q value = 0.067
Table S409. Gene #80: 'xq loss' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 41 | 37 | 39 | 12 | 41 | 24 |
| XQ LOSS MUTATED | 3 | 13 | 2 | 1 | 1 | 1 |
| XQ LOSS WILD-TYPE | 38 | 24 | 37 | 11 | 40 | 23 |
Figure S409. Get High-res Image Gene #80: 'xq loss' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S410. Gene #80: 'xq loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 151 | 230 | 149 |
| XQ LOSS MUTATED | 4 | 59 | 5 |
| XQ LOSS WILD-TYPE | 147 | 171 | 144 |
Figure S410. Get High-res Image Gene #80: 'xq loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S411. Gene #80: 'xq loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 216 | 169 | 145 |
| XQ LOSS MUTATED | 17 | 46 | 5 |
| XQ LOSS WILD-TYPE | 199 | 123 | 140 |
Figure S411. Get High-res Image Gene #80: 'xq loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S412. Gene #80: 'xq loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 226 | 143 | 161 |
| XQ LOSS MUTATED | 52 | 7 | 8 |
| XQ LOSS WILD-TYPE | 174 | 136 | 153 |
Figure S412. Get High-res Image Gene #80: 'xq loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S413. Gene #80: 'xq loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 141 | 60 | 123 | 206 |
| XQ LOSS MUTATED | 5 | 2 | 38 | 22 |
| XQ LOSS WILD-TYPE | 136 | 58 | 85 | 184 |
Figure S413. Get High-res Image Gene #80: 'xq loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S414. Gene #80: 'xq loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 115 | 139 |
| XQ LOSS MUTATED | 41 | 4 | 13 |
| XQ LOSS WILD-TYPE | 103 | 111 | 126 |
Figure S414. Get High-res Image Gene #80: 'xq loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
-
Copy number data file = transformed.cor.cli.txt
-
Molecular subtypes file = UCEC-TP.transferedmergedcluster.txt
-
Number of patients = 539
-
Number of significantly arm-level cnvs = 80
-
Number of molecular subtypes = 12
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.