[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTUCEC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/UCEC-TP/11724867/UCEC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCEC-TP/11548534/transformed.cor.cli.txt"

nPatients in clinical file=550, in cluster file=539, common to both=539
[1] 100 539
[1] "AMP PEAK  1(1P35.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE 
                           56                           483 
  AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE 
                           56                           483 
[1] "AMP PEAK  2(1P34.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE 
                           73                           466 
  AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE 
                           73                           466 
[1] "AMP PEAK  3(1P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE 
                           96                           443 
  AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE 
                           96                           443 
[1] "AMP PEAK  4(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE 
                          242                           297 
  AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE 
                          242                           297 
[1] "AMP PEAK  5(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE 
                        256                         283 
  AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE 
                        256                         283 
[1] "AMP PEAK  6(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE 
                        218                         321 
  AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE 
                        218                         321 
[1] "AMP PEAK  7(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE 
                          121                           418 
  AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE 
                          121                           418 
[1] "AMP PEAK  8(2Q13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE 
                        119                         420 
  AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE 
                        119                         420 
[1] "AMP PEAK  9(3P25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE 
                           82                           457 
  AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE 
                           82                           457 
[1] "AMP PEAK 10(3P14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE 
                           65                           474 
  AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE 
                           65                           474 
[1] "AMP PEAK 11(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE 
                          175                           364 
  AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE 
                          175                           364 
[1] "AMP PEAK 12(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE 
                          164                           375 
  AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE 
                          164                           375 
[1] "AMP PEAK 13(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE 
                           53                           486 
  AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE 
                           53                           486 
[1] "AMP PEAK 14(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE 
                            89                            450 
  AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE 
                            89                            450 
[1] "AMP PEAK 15(5Q35.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE 
                           57                           482 
  AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE 
                           57                           482 
[1] "AMP PEAK 16(6P24.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE 
                          117                           422 
  AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE 
                          117                           422 
[1] "AMP PEAK 17(6P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE 
                          107                           432 
  AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE 
                          107                           432 
[1] "AMP PEAK 18(6Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE 
                           88                           451 
  AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE 
                           88                           451 
[1] "AMP PEAK 19(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE 
                           93                           446 
  AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE 
                           93                           446 
[1] "AMP PEAK 20(8P11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE 
                           126                            413 
  AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE 
                           126                            413 
[1] "AMP PEAK 21(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE 
                           162                            377 
  AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE 
                           162                            377 
[1] "AMP PEAK 22(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE 
                           209                            330 
  AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE 
                           209                            330 
[1] "AMP PEAK 23(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE 
                           215                            324 
  AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE 
                           215                            324 
[1] "AMP PEAK 24(9P24.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE 
                           65                           474 
  AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE 
                           65                           474 
[1] "AMP PEAK 25(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE 
                           39                           500 
  AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE 
                           39                           500 
[1] "AMP PEAK 26(10Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE 
                           143                            396 
  AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE 
                           143                            396 
[1] "AMP PEAK 27(11P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE 
                            51                            488 
  AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE 
                            51                            488 
[1] "AMP PEAK 28(11Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE 
                            74                            465 
  AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE 
                            74                            465 
[1] "AMP PEAK 29(11Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE 
                            59                            480 
  AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE 
                            59                            480 
[1] "AMP PEAK 30(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE 
                            93                            446 
  AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE 
                            93                            446 
[1] "AMP PEAK 31(12Q13.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE 
                             87                             452 
  AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE 
                             87                             452 
[1] "AMP PEAK 32(12Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE 
                           100                            439 
  AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE 
                           100                            439 
[1] "AMP PEAK 33(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE 
                          58                          481 
  AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE 
                          58                          481 
[1] "AMP PEAK 34(14Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE 
                            64                            475 
  AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE 
                            64                            475 
[1] "AMP PEAK 35(14Q32.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE 
                             79                             460 
  AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE 
                             79                             460 
[1] "AMP PEAK 36(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE 
                            38                            501 
  AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE 
                            38                            501 
[1] "AMP PEAK 37(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE 
                            66                            473 
  AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE 
                            66                            473 
[1] "AMP PEAK 38(17Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE 
                            71                            468 
  AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE 
                            71                            468 
[1] "AMP PEAK 39(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE 
                          75                          464 
  AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE 
                          75                          464 
[1] "AMP PEAK 40(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE 
                           105                            434 
  AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE 
                           105                            434 
[1] "AMP PEAK 41(18P11.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE 
                             96                             443 
  AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE 
                             96                             443 
[1] "AMP PEAK 42(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE 
                            69                            470 
  AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE 
                            69                            470 
[1] "AMP PEAK 43(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE 
                            99                            440 
  AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE 
                            99                            440 
[1] "AMP PEAK 44(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE 
                         121                          418 
  AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE 
                         121                          418 
[1] "AMP PEAK 45(20P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE 
                         117                          422 
  AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE 
                         117                          422 
[1] "AMP PEAK 46(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE 
                            152                             387 
  AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE 
                            152                             387 
[1] "AMP PEAK 47(20Q13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE 
                            152                             387 
  AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE 
                            152                             387 
[1] "AMP PEAK 48(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE 
                            153                             386 
  AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE 
                            153                             386 
[1] "AMP PEAK 49(22Q12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE 
                            62                            477 
  AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE 
                            62                            477 
[1] "AMP PEAK 50(XP11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE 
                            90                            449 
  AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE 
                            90                            449 
[1] "AMP PEAK 51(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE 
                         93                         446 
  AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE 
                         93                         446 
[1] "DEL PEAK  1(1P36.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            71                            468 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            71                            468 
[1] "DEL PEAK  2(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            83                            456 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            83                            456 
[1] "DEL PEAK  3(2P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           26                           513 
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           26                           513 
[1] "DEL PEAK  4(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           48                           491 
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           48                           491 
[1] "DEL PEAK  5(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           53                           486 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           53                           486 
[1] "DEL PEAK  6(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                           79                           460 
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                           79                           460 
[1] "DEL PEAK  7(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            43                            496 
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            43                            496 
[1] "DEL PEAK  8(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE 
                           94                           445 
  DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE 
                           94                           445 
[1] "DEL PEAK  9(4P15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE 
                           98                           441 
  DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE 
                           98                           441 
[1] "DEL PEAK 10(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          106                           433 
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          106                           433 
[1] "DEL PEAK 11(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE 
                          130                           409 
  DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE 
                          130                           409 
[1] "DEL PEAK 12(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE 
                          111                           428 
  DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE 
                          111                           428 
[1] "DEL PEAK 13(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         46                         493 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         46                         493 
[1] "DEL PEAK 14(7P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE 
                           72                           467 
  DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE 
                           72                           467 
[1] "DEL PEAK 15(7Q11.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                            41                            498 
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                            41                            498 
[1] "DEL PEAK 16(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE 
                           55                           484 
  DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE 
                           55                           484 
[1] "DEL PEAK 17(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE 
                           63                           476 
  DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE 
                           63                           476 
[1] "DEL PEAK 18(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          119                           420 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          119                           420 
[1] "DEL PEAK 19(8P21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE 
                          117                           422 
  DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE 
                          117                           422 
[1] "DEL PEAK 20(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                         79                         460 
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                         79                         460 
[1] "DEL PEAK 21(9Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE 
                          129                           410 
  DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE 
                          129                           410 
[1] "DEL PEAK 22(9Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE 
                          132                           407 
  DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE 
                          132                           407 
[1] "DEL PEAK 23(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE 
                             77                             462 
  DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE 
                             77                             462 
[1] "DEL PEAK 24(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE 
                           106                            433 
  DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE 
                           106                            433 
[1] "DEL PEAK 25(11Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE 
                            70                            469 
  DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE 
                            70                            469 
[1] "DEL PEAK 26(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE 
                          93                          446 
  DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE 
                          93                          446 
[1] "DEL PEAK 27(12Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                            56                            483 
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                            56                            483 
[1] "DEL PEAK 28(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE 
                             66                             473 
  DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE 
                             66                             473 
[1] "DEL PEAK 29(13Q11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE 
                          98                          441 
  DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE 
                          98                          441 
[1] "DEL PEAK 30(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE 
                           107                            432 
  DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE 
                           107                            432 
[1] "DEL PEAK 31(14Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE 
                            73                            466 
  DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE 
                            73                            466 
[1] "DEL PEAK 32(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                           140                            399 
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                           140                            399 
[1] "DEL PEAK 33(15Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE 
                         115                          424 
  DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE 
                         115                          424 
[1] "DEL PEAK 34(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE 
                            92                            447 
  DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE 
                            92                            447 
[1] "DEL PEAK 35(16Q21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE 
                         154                          385 
  DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE 
                         154                          385 
[1] "DEL PEAK 36(16Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE 
                           158                            381 
  DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE 
                           158                            381 
[1] "DEL PEAK 37(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE 
                           166                            373 
  DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE 
                           166                            373 
[1] "DEL PEAK 38(17P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE 
                           122                            417 
  DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE 
                           122                            417 
[1] "DEL PEAK 39(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE 
                           128                            411 
  DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE 
                           128                            411 
[1] "DEL PEAK 40(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                           105                            434 
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                           105                            434 
[1] "DEL PEAK 41(17Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE 
                            114                             425 
  DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE 
                            114                             425 
[1] "DEL PEAK 42(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE 
                            91                            448 
  DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE 
                            91                            448 
[1] "DEL PEAK 43(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE 
                          98                          441 
  DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE 
                          98                          441 
[1] "DEL PEAK 44(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                           154                            385 
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                           154                            385 
[1] "DEL PEAK 45(19P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                          58                          481 
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                          58                          481 
[1] "DEL PEAK 46(19Q13.43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE 
                             67                             472 
  DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE 
                             67                             472 
[1] "DEL PEAK 47(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE 
                            36                            503 
  DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE 
                            36                            503 
[1] "DEL PEAK 48(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE 
                            141                             398 
  DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE 
                            141                             398 
[1] "DEL PEAK 49(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE 
                           88                           451 
  DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE 
                           88                           451 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 539 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 539 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P35.2) MUTATED        1      5      0      0
  AMP PEAK  1(1P35.2) WILD-TYPE     13     12     12     10
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P35.2) MUTATED        1      5      0      0      0
  AMP PEAK  1(1P35.2) WILD-TYPE     13      4      7      7     16
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P35.2) MUTATED       54      0      1      0      1
  AMP PEAK  1(1P35.2) WILD-TYPE    115    305     18      9     36
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          54                           115
  CLUS_2                           0                           305
  CLUS_3                           1                            18
  CLUS_4                           0                             9
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       35      4      6
  AMP PEAK  1(1P35.2) WILD-TYPE    130     85    165
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          35                           130
  CLUS_2                           4                            85
  CLUS_3                           6                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P35.2) MUTATED        2     10      2      0      0      3
  AMP PEAK  1(1P35.2) WILD-TYPE     39     27     37     12     41     21
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                          10                            27
  CLUS_3                           2                            37
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P35.2) MUTATED        8      5      1      3
  AMP PEAK  1(1P35.2) WILD-TYPE     59     62     42     14
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           8                            59
  CLUS_2                           5                            62
  CLUS_3                           1                            42
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED        0     48      6
  AMP PEAK  1(1P35.2) WILD-TYPE    151    182    143
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           0                           151
  CLUS_2                          48                           182
  CLUS_3                           6                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED        6     42      6
  AMP PEAK  1(1P35.2) WILD-TYPE    210    127    139
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           6                           210
  CLUS_2                          42                           127
  CLUS_3                           6                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       42      6      5
  AMP PEAK  1(1P35.2) WILD-TYPE    184    137    156
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          42                           184
  CLUS_2                           6                           137
  CLUS_3                           5                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P35.2) MUTATED        6      1     33     13
  AMP PEAK  1(1P35.2) WILD-TYPE    135     59     90    193
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           6                           135
  CLUS_2                           1                            59
  CLUS_3                          33                            90
  CLUS_4                          13                           193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       26      6     10
  AMP PEAK  1(1P35.2) WILD-TYPE    146     90    120
D1V11, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          26                           146
  CLUS_2                           6                            90
  CLUS_3                          10                           120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       28      6      8
  AMP PEAK  1(1P35.2) WILD-TYPE    116    109    131
D1V12, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          28                           116
  CLUS_2                           6                           109
  CLUS_3                           8                           131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1P34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P34.2) MUTATED        1      6      0      0
  AMP PEAK  2(1P34.2) WILD-TYPE     13     11     12     10
D2V1, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P34.2) MUTATED        2      5      0      0      0
  AMP PEAK  2(1P34.2) WILD-TYPE     12      4      7      7     16
D2V2, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P34.2) MUTATED       71      0      1      0      1
  AMP PEAK  2(1P34.2) WILD-TYPE     98    305     18      9     36
D2V3, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          71                            98
  CLUS_2                           0                           305
  CLUS_3                           1                            18
  CLUS_4                           0                             9
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       48     10      5
  AMP PEAK  2(1P34.2) WILD-TYPE    117     79    166
D2V4, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          48                           117
  CLUS_2                          10                            79
  CLUS_3                           5                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1P34.2) MUTATED        2      7      2      0      0      3
  AMP PEAK  2(1P34.2) WILD-TYPE     39     30     37     12     41     21
D2V5, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           7                            30
  CLUS_3                           2                            37
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P34.2) MUTATED        7      3      1      3
  AMP PEAK  2(1P34.2) WILD-TYPE     60     64     42     14
D2V6, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           7                            60
  CLUS_2                           3                            64
  CLUS_3                           1                            42
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED        1     63      6
  AMP PEAK  2(1P34.2) WILD-TYPE    150    167    143
D2V7, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           1                           150
  CLUS_2                          63                           167
  CLUS_3                           6                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED        7     57      6
  AMP PEAK  2(1P34.2) WILD-TYPE    209    112    139
D2V8, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           7                           209
  CLUS_2                          57                           112
  CLUS_3                           6                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       62      5      4
  AMP PEAK  2(1P34.2) WILD-TYPE    164    138    157
D2V9, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          62                           164
  CLUS_2                           5                           138
  CLUS_3                           4                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P34.2) MUTATED        5      1     47     18
  AMP PEAK  2(1P34.2) WILD-TYPE    136     59     76    188
D2V10, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           5                           136
  CLUS_2                           1                            59
  CLUS_3                          47                            76
  CLUS_4                          18                           188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       38     10     11
  AMP PEAK  2(1P34.2) WILD-TYPE    134     86    119
D2V11, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          38                           134
  CLUS_2                          10                            86
  CLUS_3                          11                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       39      5     15
  AMP PEAK  2(1P34.2) WILD-TYPE    105    110    124
D2V12, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          39                           105
  CLUS_2                           5                           110
  CLUS_3                          15                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1P22.3) MUTATED        5      5      0      0
  AMP PEAK  3(1P22.3) WILD-TYPE      9     12     12     10
D3V1, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           5                            12
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1P22.3) MUTATED        2      4      1      3      0
  AMP PEAK  3(1P22.3) WILD-TYPE     12      5      6      4     16
D3V2, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           4                             5
  CLUS_3                           1                             6
  CLUS_4                           3                             4
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1P22.3) MUTATED       53     30      2      7      4
  AMP PEAK  3(1P22.3) WILD-TYPE    116    275     17      2     33
D3V3, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          53                           116
  CLUS_2                          30                           275
  CLUS_3                           2                            17
  CLUS_4                           7                             2
  CLUS_5                           4                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       44      8     24
  AMP PEAK  3(1P22.3) WILD-TYPE    121     81    147
D3V4, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          44                           121
  CLUS_2                           8                            81
  CLUS_3                          24                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1P22.3) MUTATED        4      6      7      1      7      3
  AMP PEAK  3(1P22.3) WILD-TYPE     37     31     32     11     34     21
D3V5, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           6                            31
  CLUS_3                           7                            32
  CLUS_4                           1                            11
  CLUS_5                           7                            34
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1P22.3) MUTATED        8     11      6      3
  AMP PEAK  3(1P22.3) WILD-TYPE     59     56     37     14
D3V6, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           8                            59
  CLUS_2                          11                            56
  CLUS_3                           6                            37
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       26     59      8
  AMP PEAK  3(1P22.3) WILD-TYPE    125    171    141
D3V7, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          26                           125
  CLUS_2                          59                           171
  CLUS_3                           8                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       37     49      7
  AMP PEAK  3(1P22.3) WILD-TYPE    179    120    138
D3V8, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          37                           179
  CLUS_2                          49                           120
  CLUS_3                           7                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       54     33      8
  AMP PEAK  3(1P22.3) WILD-TYPE    172    110    153
D3V9, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          54                           172
  CLUS_2                          33                           110
  CLUS_3                           8                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1P22.3) MUTATED       11      9     39     36
  AMP PEAK  3(1P22.3) WILD-TYPE    130     51     84    170
D3V10, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          11                           130
  CLUS_2                           9                            51
  CLUS_3                          39                            84
  CLUS_4                          36                           170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       48     13     14
  AMP PEAK  3(1P22.3) WILD-TYPE    124     83    116
D3V11, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          48                           124
  CLUS_2                          13                            83
  CLUS_3                          14                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       46      8     21
  AMP PEAK  3(1P22.3) WILD-TYPE     98    107    118
D3V12, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          46                            98
  CLUS_2                           8                           107
  CLUS_3                          21                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q21.3) MUTATED       11     12      5      2
  AMP PEAK  4(1Q21.3) WILD-TYPE      3      5      7      8
D4V1, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          11                             3
  CLUS_2                          12                             5
  CLUS_3                           5                             7
  CLUS_4                           2                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(1Q21.3) MUTATED        9      7      6      5      3
  AMP PEAK  4(1Q21.3) WILD-TYPE      5      2      1      2     13
D4V2, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                           9                             5
  CLUS_2                           7                             2
  CLUS_3                           6                             1
  CLUS_4                           5                             2
  CLUS_5                           3                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(1Q21.3) MUTATED      105     90     13      9     25
  AMP PEAK  4(1Q21.3) WILD-TYPE     64    215      6      0     12
D4V3, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                         105                            64
  CLUS_2                          90                           215
  CLUS_3                          13                             6
  CLUS_4                           9                             0
  CLUS_5                          25                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       92     31     62
  AMP PEAK  4(1Q21.3) WILD-TYPE     73     58    109
D4V4, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          92                            73
  CLUS_2                          31                            58
  CLUS_3                          62                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(1Q21.3) MUTATED       14     15     17      8     19      8
  AMP PEAK  4(1Q21.3) WILD-TYPE     27     22     22      4     22     16
D4V5, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          14                            27
  CLUS_2                          15                            22
  CLUS_3                          17                            22
  CLUS_4                           8                             4
  CLUS_5                          19                            22
  CLUS_6                           8                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q21.3) MUTATED       24     28     23      6
  AMP PEAK  4(1Q21.3) WILD-TYPE     43     39     20     11
D4V6, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          24                            43
  CLUS_2                          28                            39
  CLUS_3                          23                            20
  CLUS_4                           6                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       69    128     41
  AMP PEAK  4(1Q21.3) WILD-TYPE     82    102    108
D4V7, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          69                            82
  CLUS_2                         128                           102
  CLUS_3                          41                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       96    103     39
  AMP PEAK  4(1Q21.3) WILD-TYPE    120     66    106
D4V8, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          96                           120
  CLUS_2                         103                            66
  CLUS_3                          39                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED      119     75     45
  AMP PEAK  4(1Q21.3) WILD-TYPE    107     68    116
D4V9, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                         119                           107
  CLUS_2                          75                            68
  CLUS_3                          45                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q21.3) MUTATED       44     30     80     85
  AMP PEAK  4(1Q21.3) WILD-TYPE     97     30     43    121
D4V10, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          44                            97
  CLUS_2                          30                            30
  CLUS_3                          80                            43
  CLUS_4                          85                           121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       94     40     47
  AMP PEAK  4(1Q21.3) WILD-TYPE     78     56     83
D4V11, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          94                            78
  CLUS_2                          40                            56
  CLUS_3                          47                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       88     37     56
  AMP PEAK  4(1Q21.3) WILD-TYPE     56     78     83
D4V12, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          88                            56
  CLUS_2                          37                            78
  CLUS_3                          56                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(1Q22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(1Q22) MUTATED       11     11      5      2
  AMP PEAK  5(1Q22) WILD-TYPE      3      6      7      8
D5V1, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        11                           3
  CLUS_2                        11                           6
  CLUS_3                         5                           7
  CLUS_4                         2                           8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(1Q22) MUTATED        9      6      6      5      3
  AMP PEAK  5(1Q22) WILD-TYPE      5      3      1      2     13
D5V2, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                         9                           5
  CLUS_2                         6                           3
  CLUS_3                         6                           1
  CLUS_4                         5                           2
  CLUS_5                         3                          13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(1Q22) MUTATED      116     93     13      9     25
  AMP PEAK  5(1Q22) WILD-TYPE     53    212      6      0     12
D5V3, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                       116                          53
  CLUS_2                        93                         212
  CLUS_3                        13                           6
  CLUS_4                         9                           0
  CLUS_5                        25                          12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED      100     34     63
  AMP PEAK  5(1Q22) WILD-TYPE     65     55    108
D5V4, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                       100                          65
  CLUS_2                        34                          55
  CLUS_3                        63                         108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(1Q22) MUTATED       13     19     19      8     19      8
  AMP PEAK  5(1Q22) WILD-TYPE     28     18     20      4     22     16
D5V5, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        13                          28
  CLUS_2                        19                          18
  CLUS_3                        19                          20
  CLUS_4                         8                           4
  CLUS_5                        19                          22
  CLUS_6                         8                          16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(1Q22) MUTATED       26     29     25      6
  AMP PEAK  5(1Q22) WILD-TYPE     41     38     18     11
D5V6, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        26                          41
  CLUS_2                        29                          38
  CLUS_3                        25                          18
  CLUS_4                         6                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED       70    137     45
  AMP PEAK  5(1Q22) WILD-TYPE     81     93    104
D5V7, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        70                          81
  CLUS_2                       137                          93
  CLUS_3                        45                         104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED       98    111     43
  AMP PEAK  5(1Q22) WILD-TYPE    118     58    102
D5V8, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        98                         118
  CLUS_2                       111                          58
  CLUS_3                        43                         102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED      126     77     50
  AMP PEAK  5(1Q22) WILD-TYPE    100     66    111
D5V9, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                       126                         100
  CLUS_2                        77                          66
  CLUS_3                        50                         111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(1Q22) MUTATED       48     31     88     86
  AMP PEAK  5(1Q22) WILD-TYPE     93     29     35    120
D5V10, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        48                          93
  CLUS_2                        31                          29
  CLUS_3                        88                          35
  CLUS_4                        86                         120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED       95     44     54
  AMP PEAK  5(1Q22) WILD-TYPE     77     52     76
D5V11, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        95                          77
  CLUS_2                        44                          52
  CLUS_3                        54                          76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED       89     42     62
  AMP PEAK  5(1Q22) WILD-TYPE     55     73     77
D5V12, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        89                          55
  CLUS_2                        42                          73
  CLUS_3                        62                          77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(1Q44) MUTATED       10     11      4      2
  AMP PEAK  6(1Q44) WILD-TYPE      4      6      8      8
D6V1, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        10                           4
  CLUS_2                        11                           6
  CLUS_3                         4                           8
  CLUS_4                         2                           8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(1Q44) MUTATED        9      5      5      5      3
  AMP PEAK  6(1Q44) WILD-TYPE      5      4      2      2     13
D6V2, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         9                           5
  CLUS_2                         5                           4
  CLUS_3                         5                           2
  CLUS_4                         5                           2
  CLUS_5                         3                          13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(1Q44) MUTATED       83     92     10      9     24
  AMP PEAK  6(1Q44) WILD-TYPE     86    213      9      0     13
D6V3, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        83                          86
  CLUS_2                        92                         213
  CLUS_3                        10                           9
  CLUS_4                         9                           0
  CLUS_5                        24                          13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       74     26     61
  AMP PEAK  6(1Q44) WILD-TYPE     91     63    110
D6V4, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        74                          91
  CLUS_2                        26                          63
  CLUS_3                        61                         110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(1Q44) MUTATED       14     14     17      7     18      9
  AMP PEAK  6(1Q44) WILD-TYPE     27     23     22      5     23     15
D6V5, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        14                          27
  CLUS_2                        14                          23
  CLUS_3                        17                          22
  CLUS_4                         7                           5
  CLUS_5                        18                          23
  CLUS_6                         9                          15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(1Q44) MUTATED       20     32     21      6
  AMP PEAK  6(1Q44) WILD-TYPE     47     35     22     11
D6V6, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        20                          47
  CLUS_2                        32                          35
  CLUS_3                        21                          22
  CLUS_4                         6                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       72     98     44
  AMP PEAK  6(1Q44) WILD-TYPE     79    132    105
D6V7, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        72                          79
  CLUS_2                        98                         132
  CLUS_3                        44                         105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       97     76     41
  AMP PEAK  6(1Q44) WILD-TYPE    119     93    104
D6V8, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        97                         119
  CLUS_2                        76                          93
  CLUS_3                        41                         104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       91     79     46
  AMP PEAK  6(1Q44) WILD-TYPE    135     64    115
D6V9, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        91                         135
  CLUS_2                        79                          64
  CLUS_3                        46                         115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(1Q44) MUTATED       43     30     62     81
  AMP PEAK  6(1Q44) WILD-TYPE     98     30     61    125
D6V10, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        43                          98
  CLUS_2                        30                          30
  CLUS_3                        62                          61
  CLUS_4                        81                         125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       70     37     49
  AMP PEAK  6(1Q44) WILD-TYPE    102     59     81
D6V11, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        70                         102
  CLUS_2                        37                          59
  CLUS_3                        49                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       67     38     51
  AMP PEAK  6(1Q44) WILD-TYPE     77     77     88
D6V12, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        67                          77
  CLUS_2                        38                          77
  CLUS_3                        51                          88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(2P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(2P24.3) MUTATED        1      4      2      1
  AMP PEAK  7(2P24.3) WILD-TYPE     13     13     10      9
D7V1, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           4                            13
  CLUS_3                           2                            10
  CLUS_4                           1                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(2P24.3) MUTATED        1      4      1      0      2
  AMP PEAK  7(2P24.3) WILD-TYPE     13      5      6      7     14
D7V2, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           4                             5
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(2P24.3) MUTATED       79     14     12      4     12
  AMP PEAK  7(2P24.3) WILD-TYPE     90    291      7      5     25
D7V3, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          79                            90
  CLUS_2                          14                           291
  CLUS_3                          12                             7
  CLUS_4                           4                             5
  CLUS_5                          12                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       66     11     19
  AMP PEAK  7(2P24.3) WILD-TYPE     99     78    152
D7V4, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          66                            99
  CLUS_2                          11                            78
  CLUS_3                          19                           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(2P24.3) MUTATED        4     11      3      1      6      7
  AMP PEAK  7(2P24.3) WILD-TYPE     37     26     36     11     35     17
D7V5, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                          11                            26
  CLUS_3                           3                            36
  CLUS_4                           1                            11
  CLUS_5                           6                            35
  CLUS_6                           7                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(2P24.3) MUTATED       10     13      4      5
  AMP PEAK  7(2P24.3) WILD-TYPE     57     54     39     12
D7V6, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          10                            57
  CLUS_2                          13                            54
  CLUS_3                           4                            39
  CLUS_4                           5                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       20     83     16
  AMP PEAK  7(2P24.3) WILD-TYPE    131    147    133
D7V7, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          20                           131
  CLUS_2                          83                           147
  CLUS_3                          16                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       30     72     17
  AMP PEAK  7(2P24.3) WILD-TYPE    186     97    128
D7V8, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          30                           186
  CLUS_2                          72                            97
  CLUS_3                          17                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       80     20     19
  AMP PEAK  7(2P24.3) WILD-TYPE    146    123    142
D7V9, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          80                           146
  CLUS_2                          20                           123
  CLUS_3                          19                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(2P24.3) MUTATED       18      9     59     33
  AMP PEAK  7(2P24.3) WILD-TYPE    123     51     64    173
D7V10, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          18                           123
  CLUS_2                           9                            51
  CLUS_3                          59                            64
  CLUS_4                          33                           173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       56     20     16
  AMP PEAK  7(2P24.3) WILD-TYPE    116     76    114
D7V11, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          56                           116
  CLUS_2                          20                            76
  CLUS_3                          16                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       46     14     32
  AMP PEAK  7(2P24.3) WILD-TYPE     98    101    107
D7V12, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          46                            98
  CLUS_2                          14                           101
  CLUS_3                          32                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(2Q13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(2Q13) MUTATED        2      6      2      0
  AMP PEAK  8(2Q13) WILD-TYPE     12     11     10     10
D8V1, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         2                          12
  CLUS_2                         6                          11
  CLUS_3                         2                          10
  CLUS_4                         0                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(2Q13) MUTATED        3      5      1      0      1
  AMP PEAK  8(2Q13) WILD-TYPE     11      4      6      7     15
D8V2, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         3                          11
  CLUS_2                         5                           4
  CLUS_3                         1                           6
  CLUS_4                         0                           7
  CLUS_5                         1                          15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(2Q13) MUTATED       90      8      9      3      9
  AMP PEAK  8(2Q13) WILD-TYPE     79    297     10      6     28
D8V3, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        90                          79
  CLUS_2                         8                         297
  CLUS_3                         9                          10
  CLUS_4                         3                           6
  CLUS_5                         9                          28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       72     14     10
  AMP PEAK  8(2Q13) WILD-TYPE     93     75    161
D8V4, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        72                          93
  CLUS_2                        14                          75
  CLUS_3                        10                         161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(2Q13) MUTATED        5     12      1      1      4      7
  AMP PEAK  8(2Q13) WILD-TYPE     36     25     38     11     37     17
D8V5, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         5                          36
  CLUS_2                        12                          25
  CLUS_3                         1                          38
  CLUS_4                         1                          11
  CLUS_5                         4                          37
  CLUS_6                         7                          17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(2Q13) MUTATED       13      8      3      6
  AMP PEAK  8(2Q13) WILD-TYPE     54     59     40     11
D8V6, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        13                          54
  CLUS_2                         8                          59
  CLUS_3                         3                          40
  CLUS_4                         6                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       12     96      8
  AMP PEAK  8(2Q13) WILD-TYPE    139    134    141
D8V7, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        12                         139
  CLUS_2                        96                         134
  CLUS_3                         8                         141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       21     86      9
  AMP PEAK  8(2Q13) WILD-TYPE    195     83    136
D8V8, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        21                         195
  CLUS_2                        86                          83
  CLUS_3                         9                         136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       92     16      9
  AMP PEAK  8(2Q13) WILD-TYPE    134    127    152
D8V9, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        92                         134
  CLUS_2                        16                         127
  CLUS_3                         9                         152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(2Q13) MUTATED       12      5     70     30
  AMP PEAK  8(2Q13) WILD-TYPE    129     55     53    176
D8V10, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        12                         129
  CLUS_2                         5                          55
  CLUS_3                        70                          53
  CLUS_4                        30                         176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       61     22     11
  AMP PEAK  8(2Q13) WILD-TYPE    111     74    119
D8V11, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        61                         111
  CLUS_2                        22                          74
  CLUS_3                        11                         119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       51      8     35
  AMP PEAK  8(2Q13) WILD-TYPE     93    107    104
D8V12, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        51                          93
  CLUS_2                         8                         107
  CLUS_3                        35                         104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(3P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(3P25.1) MUTATED        1      5      2      0
  AMP PEAK  9(3P25.1) WILD-TYPE     13     12     10     10
D9V1, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           2                            10
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(3P25.1) MUTATED        3      3      2      0      0
  AMP PEAK  9(3P25.1) WILD-TYPE     11      6      5      7     16
D9V2, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           3                             6
  CLUS_3                           2                             5
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(3P25.1) MUTATED       62      4      1      3     12
  AMP PEAK  9(3P25.1) WILD-TYPE    107    301     18      6     25
D9V3, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          62                           107
  CLUS_2                           4                           301
  CLUS_3                           1                            18
  CLUS_4                           3                             6
  CLUS_5                          12                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       44     14     10
  AMP PEAK  9(3P25.1) WILD-TYPE    121     75    161
D9V4, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          44                           121
  CLUS_2                          14                            75
  CLUS_3                          10                           161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(3P25.1) MUTATED        6      7      3      1      0      1
  AMP PEAK  9(3P25.1) WILD-TYPE     35     30     36     11     41     23
D9V5, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           7                            30
  CLUS_3                           3                            36
  CLUS_4                           1                            11
  CLUS_5                           0                            41
  CLUS_6                           1                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(3P25.1) MUTATED        9      7      2      0
  AMP PEAK  9(3P25.1) WILD-TYPE     58     60     41     17
D9V6, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                           7                            60
  CLUS_3                           2                            41
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED        4     66     11
  AMP PEAK  9(3P25.1) WILD-TYPE    147    164    138
D9V7, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           4                           147
  CLUS_2                          66                           164
  CLUS_3                          11                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       16     55     10
  AMP PEAK  9(3P25.1) WILD-TYPE    200    114    135
D9V8, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          16                           200
  CLUS_2                          55                           114
  CLUS_3                          10                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       58     11     11
  AMP PEAK  9(3P25.1) WILD-TYPE    168    132    150
D9V9, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          58                           168
  CLUS_2                          11                           132
  CLUS_3                          11                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(3P25.1) MUTATED       13      0     44     23
  AMP PEAK  9(3P25.1) WILD-TYPE    128     60     79    183
D9V10, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          13                           128
  CLUS_2                           0                            60
  CLUS_3                          44                            79
  CLUS_4                          23                           183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       40     18      7
  AMP PEAK  9(3P25.1) WILD-TYPE    132     78    123
D9V11, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          40                           132
  CLUS_2                          18                            78
  CLUS_3                           7                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       35      9     21
  AMP PEAK  9(3P25.1) WILD-TYPE    109    106    118
D9V12, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          35                           109
  CLUS_2                           9                           106
  CLUS_3                          21                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(3P14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(3P14.1) MUTATED        0      2      1      0
  AMP PEAK 10(3P14.1) WILD-TYPE     14     15     11     10
D10V1, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           2                            15
  CLUS_3                           1                            11
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(3P14.1) MUTATED        1      1      1      0      0
  AMP PEAK 10(3P14.1) WILD-TYPE     13      8      6      7     16
D10V2, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           1                             8
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(3P14.1) MUTATED       46      3      1      3     12
  AMP PEAK 10(3P14.1) WILD-TYPE    123    302     18      6     25
D10V3, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          46                           123
  CLUS_2                           3                           302
  CLUS_3                           1                            18
  CLUS_4                           3                             6
  CLUS_5                          12                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       35     10     11
  AMP PEAK 10(3P14.1) WILD-TYPE    130     79    160
D10V4, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          35                           130
  CLUS_2                          10                            79
  CLUS_3                          11                           160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(3P14.1) MUTATED        4      6      2      1      0      0
  AMP PEAK 10(3P14.1) WILD-TYPE     37     31     37     11     41     24
D10V5, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           6                            31
  CLUS_3                           2                            37
  CLUS_4                           1                            11
  CLUS_5                           0                            41
  CLUS_6                           0                            24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(3P14.1) MUTATED        6      5      2      0
  AMP PEAK 10(3P14.1) WILD-TYPE     61     62     41     17
D10V6, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           6                            61
  CLUS_2                           5                            62
  CLUS_3                           2                            41
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED        4     49     11
  AMP PEAK 10(3P14.1) WILD-TYPE    147    181    138
D10V7, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           4                           147
  CLUS_2                          49                           181
  CLUS_3                          11                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       15     39     10
  AMP PEAK 10(3P14.1) WILD-TYPE    201    130    135
D10V8, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          15                           201
  CLUS_2                          39                           130
  CLUS_3                          10                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       44     10     10
  AMP PEAK 10(3P14.1) WILD-TYPE    182    133    151
D10V9, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          44                           182
  CLUS_2                          10                           133
  CLUS_3                          10                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(3P14.1) MUTATED       13      0     31     20
  AMP PEAK 10(3P14.1) WILD-TYPE    128     60     92    186
D10V10, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          13                           128
  CLUS_2                           0                            60
  CLUS_3                          31                            92
  CLUS_4                          20                           186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       28     17      7
  AMP PEAK 10(3P14.1) WILD-TYPE    144     79    123
D10V11, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          28                           144
  CLUS_2                          17                            79
  CLUS_3                           7                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       24     10     18
  AMP PEAK 10(3P14.1) WILD-TYPE    120    105    121
D10V12, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          24                           120
  CLUS_2                          10                           105
  CLUS_3                          18                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(3Q26.2) MUTATED        1     11      1      0
  AMP PEAK 11(3Q26.2) WILD-TYPE     13      6     11     10
D11V1, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                          11                             6
  CLUS_3                           1                            11
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(3Q26.2) MUTATED        4      8      1      0      0
  AMP PEAK 11(3Q26.2) WILD-TYPE     10      1      6      7     16
D11V2, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           8                             1
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(3Q26.2) MUTATED      141     11      3      5     15
  AMP PEAK 11(3Q26.2) WILD-TYPE     28    294     16      4     22
D11V3, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                         141                            28
  CLUS_2                          11                           294
  CLUS_3                           3                            16
  CLUS_4                           5                             4
  CLUS_5                          15                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED      102     25     23
  AMP PEAK 11(3Q26.2) WILD-TYPE     63     64    148
D11V4, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                         102                            63
  CLUS_2                          25                            64
  CLUS_3                          23                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(3Q26.2) MUTATED       11     15      4      1      1      6
  AMP PEAK 11(3Q26.2) WILD-TYPE     30     22     35     11     40     18
D11V5, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          11                            30
  CLUS_2                          15                            22
  CLUS_3                           4                            35
  CLUS_4                           1                            11
  CLUS_5                           1                            40
  CLUS_6                           6                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(3Q26.2) MUTATED       21     10      3      4
  AMP PEAK 11(3Q26.2) WILD-TYPE     46     57     40     13
D11V6, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          21                            46
  CLUS_2                          10                            57
  CLUS_3                           3                            40
  CLUS_4                           4                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED        8    140     23
  AMP PEAK 11(3Q26.2) WILD-TYPE    143     90    126
D11V7, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           8                           143
  CLUS_2                         140                            90
  CLUS_3                          23                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED       28    120     23
  AMP PEAK 11(3Q26.2) WILD-TYPE    188     49    122
D11V8, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          28                           188
  CLUS_2                         120                            49
  CLUS_3                          23                           122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED      133     16     22
  AMP PEAK 11(3Q26.2) WILD-TYPE     93    127    139
D11V9, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                         133                            93
  CLUS_2                          16                           127
  CLUS_3                          22                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(3Q26.2) MUTATED       26      0     91     54
  AMP PEAK 11(3Q26.2) WILD-TYPE    115     60     32    152
D11V10, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          26                           115
  CLUS_2                           0                            60
  CLUS_3                          91                            32
  CLUS_4                          54                           152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED       85     33     25
  AMP PEAK 11(3Q26.2) WILD-TYPE     87     63    105
D11V11, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          85                            87
  CLUS_2                          33                            63
  CLUS_3                          25                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED       78     20     45
  AMP PEAK 11(3Q26.2) WILD-TYPE     66     95     94
D11V12, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          78                            66
  CLUS_2                          20                            95
  CLUS_3                          45                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(3Q26.2) MUTATED        1     10      1      0
  AMP PEAK 12(3Q26.2) WILD-TYPE     13      7     11     10
D12V1, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                          10                             7
  CLUS_3                           1                            11
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(3Q26.2) MUTATED        3      8      1      0      0
  AMP PEAK 12(3Q26.2) WILD-TYPE     11      1      6      7     16
D12V2, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           8                             1
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(3Q26.2) MUTATED      135      7      3      5     14
  AMP PEAK 12(3Q26.2) WILD-TYPE     34    298     16      4     23
D12V3, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                         135                            34
  CLUS_2                           7                           298
  CLUS_3                           3                            16
  CLUS_4                           5                             4
  CLUS_5                          14                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED      101     20     20
  AMP PEAK 12(3Q26.2) WILD-TYPE     64     69    151
D12V4, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                         101                            64
  CLUS_2                          20                            69
  CLUS_3                          20                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(3Q26.2) MUTATED       11     13      4      1      1      7
  AMP PEAK 12(3Q26.2) WILD-TYPE     30     24     35     11     40     17
D12V5, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          11                            30
  CLUS_2                          13                            24
  CLUS_3                           4                            35
  CLUS_4                           1                            11
  CLUS_5                           1                            40
  CLUS_6                           7                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(3Q26.2) MUTATED       19     10      3      5
  AMP PEAK 12(3Q26.2) WILD-TYPE     48     57     40     12
D12V6, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          19                            48
  CLUS_2                          10                            57
  CLUS_3                           3                            40
  CLUS_4                           5                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED        8    133     19
  AMP PEAK 12(3Q26.2) WILD-TYPE    143     97    130
D12V7, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                           8                           143
  CLUS_2                         133                            97
  CLUS_3                          19                           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED       26    115     19
  AMP PEAK 12(3Q26.2) WILD-TYPE    190     54    126
D12V8, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          26                           190
  CLUS_2                         115                            54
  CLUS_3                          19                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED      125     17     18
  AMP PEAK 12(3Q26.2) WILD-TYPE    101    126    143
D12V9, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                         125                           101
  CLUS_2                          17                           126
  CLUS_3                          18                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(3Q26.2) MUTATED       22      0     88     50
  AMP PEAK 12(3Q26.2) WILD-TYPE    119     60     35    156
D12V10, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          22                           119
  CLUS_2                           0                            60
  CLUS_3                          88                            35
  CLUS_4                          50                           156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED       84     28     22
  AMP PEAK 12(3Q26.2) WILD-TYPE     88     68    108
D12V11, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          84                            88
  CLUS_2                          28                            68
  CLUS_3                          22                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED       77     16     41
  AMP PEAK 12(3Q26.2) WILD-TYPE     67     99     98
D12V12, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          77                            67
  CLUS_2                          16                            99
  CLUS_3                          41                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(4P16.3) MUTATED        1      5      0      0
  AMP PEAK 13(4P16.3) WILD-TYPE     13     12     12     10
D13V1, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(4P16.3) MUTATED        2      4      0      0      0
  AMP PEAK 13(4P16.3) WILD-TYPE     12      5      7      7     16
D13V2, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(4P16.3) MUTATED       50      2      0      0      1
  AMP PEAK 13(4P16.3) WILD-TYPE    119    303     19      9     36
D13V3, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          50                           119
  CLUS_2                           2                           303
  CLUS_3                           0                            19
  CLUS_4                           0                             9
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED       30      8      6
  AMP PEAK 13(4P16.3) WILD-TYPE    135     81    165
D13V4, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          30                           135
  CLUS_2                           8                            81
  CLUS_3                           6                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(4P16.3) MUTATED        4      5      1      0      0      2
  AMP PEAK 13(4P16.3) WILD-TYPE     37     32     38     12     41     22
D13V5, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           5                            32
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(4P16.3) MUTATED       10      0      1      1
  AMP PEAK 13(4P16.3) WILD-TYPE     57     67     42     16
D13V6, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          10                            57
  CLUS_2                           0                            67
  CLUS_3                           1                            42
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED        1     49      2
  AMP PEAK 13(4P16.3) WILD-TYPE    150    181    147
D13V7, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           1                           150
  CLUS_2                          49                           181
  CLUS_3                           2                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED        7     42      3
  AMP PEAK 13(4P16.3) WILD-TYPE    209    127    142
D13V8, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           7                           209
  CLUS_2                          42                           127
  CLUS_3                           3                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED       44      3      4
  AMP PEAK 13(4P16.3) WILD-TYPE    182    140    157
D13V9, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          44                           182
  CLUS_2                           3                           140
  CLUS_3                           4                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(4P16.3) MUTATED        5      0     33     13
  AMP PEAK 13(4P16.3) WILD-TYPE    136     60     90    193
D13V10, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           5                           136
  CLUS_2                           0                            60
  CLUS_3                          33                            90
  CLUS_4                          13                           193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED       29      7      6
  AMP PEAK 13(4P16.3) WILD-TYPE    143     89    124
D13V11, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          29                           143
  CLUS_2                           7                            89
  CLUS_3                           6                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED       26      4     12
  AMP PEAK 13(4P16.3) WILD-TYPE    118    111    127
D13V12, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          26                           118
  CLUS_2                           4                           111
  CLUS_3                          12                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(5P15.33) MUTATED        2      5      1      0
  AMP PEAK 14(5P15.33) WILD-TYPE     12     12     11     10
D14V1, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            5                             12
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(5P15.33) MUTATED        2      4      1      1      0
  AMP PEAK 14(5P15.33) WILD-TYPE     12      5      6      6     16
D14V2, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              5
  CLUS_3                            1                              6
  CLUS_4                            1                              6
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(5P15.33) MUTATED       80      4      4      1      0
  AMP PEAK 14(5P15.33) WILD-TYPE     89    301     15      8     37
D14V3, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           80                             89
  CLUS_2                            4                            301
  CLUS_3                            4                             15
  CLUS_4                            1                              8
  CLUS_5                            0                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       58     11      7
  AMP PEAK 14(5P15.33) WILD-TYPE    107     78    164
D14V4, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           58                            107
  CLUS_2                           11                             78
  CLUS_3                            7                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(5P15.33) MUTATED        3      5      2      0      3      5
  AMP PEAK 14(5P15.33) WILD-TYPE     38     32     37     12     38     19
D14V5, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            5                             32
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            3                             38
  CLUS_6                            5                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(5P15.33) MUTATED        7      4      4      3
  AMP PEAK 14(5P15.33) WILD-TYPE     60     63     39     14
D14V6, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            7                             60
  CLUS_2                            4                             63
  CLUS_3                            4                             39
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED        5     78      4
  AMP PEAK 14(5P15.33) WILD-TYPE    146    152    145
D14V7, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            5                            146
  CLUS_2                           78                            152
  CLUS_3                            4                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       16     66      5
  AMP PEAK 14(5P15.33) WILD-TYPE    200    103    140
D14V8, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           16                            200
  CLUS_2                           66                            103
  CLUS_3                            5                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       72     11      5
  AMP PEAK 14(5P15.33) WILD-TYPE    154    132    156
D14V9, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           72                            154
  CLUS_2                           11                            132
  CLUS_3                            5                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(5P15.33) MUTATED        6      4     53     25
  AMP PEAK 14(5P15.33) WILD-TYPE    135     56     70    181
D14V10, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            6                            135
  CLUS_2                            4                             56
  CLUS_3                           53                             70
  CLUS_4                           25                            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       54     15      6
  AMP PEAK 14(5P15.33) WILD-TYPE    118     81    124
D14V11, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           54                            118
  CLUS_2                           15                             81
  CLUS_3                            6                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       47      4     24
  AMP PEAK 14(5P15.33) WILD-TYPE     97    111    115
D14V12, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           47                             97
  CLUS_2                            4                            111
  CLUS_3                           24                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(5Q35.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(5Q35.3) MUTATED        0      3      0      0
  AMP PEAK 15(5Q35.3) WILD-TYPE     14     14     12     10
D15V1, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           3                            14
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(5Q35.3) MUTATED        1      2      0      0      0
  AMP PEAK 15(5Q35.3) WILD-TYPE     13      7      7      7     16
D15V2, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           2                             7
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(5Q35.3) MUTATED       51      1      4      1      0
  AMP PEAK 15(5Q35.3) WILD-TYPE    118    304     15      8     37
D15V3, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          51                           118
  CLUS_2                           1                           304
  CLUS_3                           4                            15
  CLUS_4                           1                             8
  CLUS_5                           0                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       35      9      6
  AMP PEAK 15(5Q35.3) WILD-TYPE    130     80    165
D15V4, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          35                           130
  CLUS_2                           9                            80
  CLUS_3                           6                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(5Q35.3) MUTATED        1      5      0      0      3      1
  AMP PEAK 15(5Q35.3) WILD-TYPE     40     32     39     12     38     23
D15V5, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           1                            40
  CLUS_2                           5                            32
  CLUS_3                           0                            39
  CLUS_4                           0                            12
  CLUS_5                           3                            38
  CLUS_6                           1                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(5Q35.3) MUTATED        4      4      2      0
  AMP PEAK 15(5Q35.3) WILD-TYPE     63     63     41     17
D15V6, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           4                            63
  CLUS_2                           4                            63
  CLUS_3                           2                            41
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED        4     49      3
  AMP PEAK 15(5Q35.3) WILD-TYPE    147    181    146
D15V7, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           4                           147
  CLUS_2                          49                           181
  CLUS_3                           3                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       11     42      3
  AMP PEAK 15(5Q35.3) WILD-TYPE    205    127    142
D15V8, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          11                           205
  CLUS_2                          42                           127
  CLUS_3                           3                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       45      7      4
  AMP PEAK 15(5Q35.3) WILD-TYPE    181    136    157
D15V9, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          45                           181
  CLUS_2                           7                           136
  CLUS_3                           4                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(5Q35.3) MUTATED        5      4     32     15
  AMP PEAK 15(5Q35.3) WILD-TYPE    136     56     91    191
D15V10, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           5                           136
  CLUS_2                           4                            56
  CLUS_3                          32                            91
  CLUS_4                          15                           191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       30     13      5
  AMP PEAK 15(5Q35.3) WILD-TYPE    142     83    125
D15V11, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          30                           142
  CLUS_2                          13                            83
  CLUS_3                           5                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       27      5     16
  AMP PEAK 15(5Q35.3) WILD-TYPE    117    110    123
D15V12, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          27                           117
  CLUS_2                           5                           110
  CLUS_3                          16                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(6P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(6P24.2) MUTATED        1      9      2      0
  AMP PEAK 16(6P24.2) WILD-TYPE     13      8     10     10
D16V1, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           9                             8
  CLUS_3                           2                            10
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(6P24.2) MUTATED        3      7      0      0      2
  AMP PEAK 16(6P24.2) WILD-TYPE     11      2      7      7     14
D16V2, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           7                             2
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(6P24.2) MUTATED       95      8      1      1     12
  AMP PEAK 16(6P24.2) WILD-TYPE     74    297     18      8     25
D16V3, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          95                            74
  CLUS_2                           8                           297
  CLUS_3                           1                            18
  CLUS_4                           1                             8
  CLUS_5                          12                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       73     15     12
  AMP PEAK 16(6P24.2) WILD-TYPE     92     74    159
D16V4, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          73                            92
  CLUS_2                          15                            74
  CLUS_3                          12                           159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(6P24.2) MUTATED        5     13      2      1      0      3
  AMP PEAK 16(6P24.2) WILD-TYPE     36     24     37     11     41     21
D16V5, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                          13                            24
  CLUS_3                           2                            37
  CLUS_4                           1                            11
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(6P24.2) MUTATED       12      8      2      2
  AMP PEAK 16(6P24.2) WILD-TYPE     55     59     41     15
D16V6, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           8                            59
  CLUS_3                           2                            41
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED        6     96     15
  AMP PEAK 16(6P24.2) WILD-TYPE    145    134    134
D16V7, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           6                           145
  CLUS_2                          96                           134
  CLUS_3                          15                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       24     79     14
  AMP PEAK 16(6P24.2) WILD-TYPE    192     90    131
D16V8, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          24                           192
  CLUS_2                          79                            90
  CLUS_3                          14                           131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       86     16     12
  AMP PEAK 16(6P24.2) WILD-TYPE    140    127    149
D16V9, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          86                           140
  CLUS_2                          16                           127
  CLUS_3                          12                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(6P24.2) MUTATED       12      1     63     38
  AMP PEAK 16(6P24.2) WILD-TYPE    129     59     60    168
D16V10, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          12                           129
  CLUS_2                           1                            59
  CLUS_3                          63                            60
  CLUS_4                          38                           168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       58     24     14
  AMP PEAK 16(6P24.2) WILD-TYPE    114     72    116
D16V11, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          58                           114
  CLUS_2                          24                            72
  CLUS_3                          14                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       51     13     32
  AMP PEAK 16(6P24.2) WILD-TYPE     93    102    107
D16V12, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          51                            93
  CLUS_2                          13                           102
  CLUS_3                          32                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(6P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(6P22.3) MUTATED        1      5      2      0
  AMP PEAK 17(6P22.3) WILD-TYPE     13     12     10     10
D17V1, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           2                            10
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(6P22.3) MUTATED        2      4      0      0      2
  AMP PEAK 17(6P22.3) WILD-TYPE     12      5      7      7     14
D17V2, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(6P22.3) MUTATED       86      7      1      1     12
  AMP PEAK 17(6P22.3) WILD-TYPE     83    298     18      8     25
D17V3, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                          86                            83
  CLUS_2                           7                           298
  CLUS_3                           1                            18
  CLUS_4                           1                             8
  CLUS_5                          12                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6P22.3) MUTATED       70     15     10
  AMP PEAK 17(6P22.3) WILD-TYPE     95     74    161
D17V4, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                          70                            95
  CLUS_2                          15                            74
  CLUS_3                          10                           161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(6P22.3) MUTATED        4      8      2      1      0      2
  AMP PEAK 17(6P22.3) WILD-TYPE     37     29     37     11     41     22
D17V5, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           8                            29
  CLUS_3                           2                            37
  CLUS_4                           1                            11
  CLUS_5                           0                            41
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(6P22.3) MUTATED        8      6      2      1
  AMP PEAK 17(6P22.3) WILD-TYPE     59     61     41     16
D17V6, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                           8                            59
  CLUS_2                           6                            61
  CLUS_3                           2                            41
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6P22.3) MUTATED        6     86     14
  AMP PEAK 17(6P22.3) WILD-TYPE    145    144    135
D17V7, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                           6                           145
  CLUS_2                          86                           144
  CLUS_3                          14                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6P22.3) MUTATED       21     72     13
  AMP PEAK 17(6P22.3) WILD-TYPE    195     97    132
D17V8, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                          21                           195
  CLUS_2                          72                            97
  CLUS_3                          13                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6P22.3) MUTATED       81     14     11
  AMP PEAK 17(6P22.3) WILD-TYPE    145    129    150
D17V9, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                          81                           145
  CLUS_2                          14                           129
  CLUS_3                          11                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(6P22.3) MUTATED       11      1     59     35
  AMP PEAK 17(6P22.3) WILD-TYPE    130     59     64    171
D17V10, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                          11                           130
  CLUS_2                           1                            59
  CLUS_3                          59                            64
  CLUS_4                          35                           171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6P22.3) MUTATED       58     21     12
  AMP PEAK 17(6P22.3) WILD-TYPE    114     75    118
D17V11, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                          58                           114
  CLUS_2                          21                            75
  CLUS_3                          12                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6P22.3) MUTATED       50     11     30
  AMP PEAK 17(6P22.3) WILD-TYPE     94    104    109
D17V12, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                          50                            94
  CLUS_2                          11                           104
  CLUS_3                          30                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(6Q25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(6Q25.1) MUTATED        0      2      2      0
  AMP PEAK 18(6Q25.1) WILD-TYPE     14     15     10     10
D18V1, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           2                            15
  CLUS_3                           2                            10
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(6Q25.1) MUTATED        1      1      0      0      2
  AMP PEAK 18(6Q25.1) WILD-TYPE     13      8      7      7     14
D18V2, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           1                             8
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(6Q25.1) MUTATED       65      7      3      2     11
  AMP PEAK 18(6Q25.1) WILD-TYPE    104    298     16      7     26
D18V3, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                          65                           104
  CLUS_2                           7                           298
  CLUS_3                           3                            16
  CLUS_4                           2                             7
  CLUS_5                          11                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(6Q25.1) MUTATED       55     10     14
  AMP PEAK 18(6Q25.1) WILD-TYPE    110     79    157
D18V4, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                          55                           110
  CLUS_2                          10                            79
  CLUS_3                          14                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(6Q25.1) MUTATED        5      7      1      1      1      2
  AMP PEAK 18(6Q25.1) WILD-TYPE     36     30     38     11     40     22
D18V5, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           7                            30
  CLUS_3                           1                            38
  CLUS_4                           1                            11
  CLUS_5                           1                            40
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(6Q25.1) MUTATED        9      5      2      1
  AMP PEAK 18(6Q25.1) WILD-TYPE     58     62     41     16
D18V6, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                           5                            62
  CLUS_3                           2                            41
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(6Q25.1) MUTATED        8     62     17
  AMP PEAK 18(6Q25.1) WILD-TYPE    143    168    132
D18V7, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                           8                           143
  CLUS_2                          62                           168
  CLUS_3                          17                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(6Q25.1) MUTATED       22     48     17
  AMP PEAK 18(6Q25.1) WILD-TYPE    194    121    128
D18V8, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                          22                           194
  CLUS_2                          48                           121
  CLUS_3                          17                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(6Q25.1) MUTATED       57     19     12
  AMP PEAK 18(6Q25.1) WILD-TYPE    169    124    149
D18V9, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                          57                           169
  CLUS_2                          19                           124
  CLUS_3                          12                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(6Q25.1) MUTATED       12      2     41     33
  AMP PEAK 18(6Q25.1) WILD-TYPE    129     58     82    173
D18V10, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                          12                           129
  CLUS_2                           2                            58
  CLUS_3                          41                            82
  CLUS_4                          33                           173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(6Q25.1) MUTATED       48     17     11
  AMP PEAK 18(6Q25.1) WILD-TYPE    124     79    119
D18V11, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                          48                           124
  CLUS_2                          17                            79
  CLUS_3                          11                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(6Q25.1) MUTATED       37     15     24
  AMP PEAK 18(6Q25.1) WILD-TYPE    107    100    115
D18V12, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                          37                           107
  CLUS_2                          15                           100
  CLUS_3                          24                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(7Q31.2) MUTATED        1      4      3      1
  AMP PEAK 19(7Q31.2) WILD-TYPE     13     13      9      9
D19V1, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           4                            13
  CLUS_3                           3                             9
  CLUS_4                           1                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(7Q31.2) MUTATED        1      3      2      1      2
  AMP PEAK 19(7Q31.2) WILD-TYPE     13      6      5      6     14
D19V2, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           3                             6
  CLUS_3                           2                             5
  CLUS_4                           1                             6
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(7Q31.2) MUTATED       53     15     13      2     10
  AMP PEAK 19(7Q31.2) WILD-TYPE    116    290      6      7     27
D19V3, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                          53                           116
  CLUS_2                          15                           290
  CLUS_3                          13                             6
  CLUS_4                           2                             7
  CLUS_5                          10                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(7Q31.2) MUTATED       45      8     21
  AMP PEAK 19(7Q31.2) WILD-TYPE    120     81    150
D19V4, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                          45                           120
  CLUS_2                           8                            81
  CLUS_3                          21                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(7Q31.2) MUTATED        3      5      2      1      5      4
  AMP PEAK 19(7Q31.2) WILD-TYPE     38     32     37     11     36     20
D19V5, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                           3                            38
  CLUS_2                           5                            32
  CLUS_3                           2                            37
  CLUS_4                           1                            11
  CLUS_5                           5                            36
  CLUS_6                           4                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(7Q31.2) MUTATED        4      9      5      2
  AMP PEAK 19(7Q31.2) WILD-TYPE     63     58     38     15
D19V6, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                           4                            63
  CLUS_2                           9                            58
  CLUS_3                           5                            38
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(7Q31.2) MUTATED       15     56     17
  AMP PEAK 19(7Q31.2) WILD-TYPE    136    174    132
D19V7, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                          15                           136
  CLUS_2                          56                           174
  CLUS_3                          17                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(7Q31.2) MUTATED       25     45     18
  AMP PEAK 19(7Q31.2) WILD-TYPE    191    124    127
D19V8, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                          25                           191
  CLUS_2                          45                           124
  CLUS_3                          18                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(7Q31.2) MUTATED       56     21     16
  AMP PEAK 19(7Q31.2) WILD-TYPE    170    122    145
D19V9, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                          56                           170
  CLUS_2                          21                           122
  CLUS_3                          16                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(7Q31.2) MUTATED       17     12     33     31
  AMP PEAK 19(7Q31.2) WILD-TYPE    124     48     90    175
D19V10, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                          17                           124
  CLUS_2                          12                            48
  CLUS_3                          33                            90
  CLUS_4                          31                           175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(7Q31.2) MUTATED       39     19     14
  AMP PEAK 19(7Q31.2) WILD-TYPE    133     77    116
D19V11, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                          39                           133
  CLUS_2                          19                            77
  CLUS_3                          14                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(7Q31.2) MUTATED       35     12     25
  AMP PEAK 19(7Q31.2) WILD-TYPE    109    103    114
D19V12, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                          35                           109
  CLUS_2                          12                           103
  CLUS_3                          25                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(8P11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(8P11.22) MUTATED        1      6      2      0
  AMP PEAK 20(8P11.22) WILD-TYPE     13     11     10     10
D20V1, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            6                             11
  CLUS_3                            2                             10
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(8P11.22) MUTATED        4      3      0      0      2
  AMP PEAK 20(8P11.22) WILD-TYPE     10      6      7      7     14
D20V2, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            3                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            2                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(8P11.22) MUTATED       50     29      8      2     37
  AMP PEAK 20(8P11.22) WILD-TYPE    119    276     11      7      0
D20V3, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           50                            119
  CLUS_2                           29                            276
  CLUS_3                            8                             11
  CLUS_4                            2                              7
  CLUS_5                           37                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8P11.22) MUTATED       41     22     43
  AMP PEAK 20(8P11.22) WILD-TYPE    124     67    128
D20V4, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           41                            124
  CLUS_2                           22                             67
  CLUS_3                           43                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(8P11.22) MUTATED        8     11      5      2      2      7
  AMP PEAK 20(8P11.22) WILD-TYPE     33     26     34     10     39     17
D20V5, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                            8                             33
  CLUS_2                           11                             26
  CLUS_3                            5                             34
  CLUS_4                            2                             10
  CLUS_5                            2                             39
  CLUS_6                            7                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(8P11.22) MUTATED       10     14      6      5
  AMP PEAK 20(8P11.22) WILD-TYPE     57     53     37     12
D20V6, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                           14                             53
  CLUS_3                            6                             37
  CLUS_4                            5                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8P11.22) MUTATED       29     63     34
  AMP PEAK 20(8P11.22) WILD-TYPE    122    167    115
D20V7, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           29                            122
  CLUS_2                           63                            167
  CLUS_3                           34                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8P11.22) MUTATED       51     39     36
  AMP PEAK 20(8P11.22) WILD-TYPE    165    130    109
D20V8, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           51                            165
  CLUS_2                           39                            130
  CLUS_3                           36                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8P11.22) MUTATED       54     37     33
  AMP PEAK 20(8P11.22) WILD-TYPE    172    106    128
D20V9, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           54                            172
  CLUS_2                           37                            106
  CLUS_3                           33                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(8P11.22) MUTATED       33      7     27     57
  AMP PEAK 20(8P11.22) WILD-TYPE    108     53     96    149
D20V10, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           33                            108
  CLUS_2                            7                             53
  CLUS_3                           27                             96
  CLUS_4                           57                            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8P11.22) MUTATED       45     25     29
  AMP PEAK 20(8P11.22) WILD-TYPE    127     71    101
D20V11, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           45                            127
  CLUS_2                           25                             71
  CLUS_3                           29                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8P11.22) MUTATED       39     27     33
  AMP PEAK 20(8P11.22) WILD-TYPE    105     88    106
D20V12, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           39                            105
  CLUS_2                           27                             88
  CLUS_3                           33                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(8P11.21) MUTATED        1      8      2      0
  AMP PEAK 21(8P11.21) WILD-TYPE     13      9     10     10
D21V1, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            8                              9
  CLUS_3                            2                             10
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(8P11.21) MUTATED        4      5      0      0      2
  AMP PEAK 21(8P11.21) WILD-TYPE     10      4      7      7     14
D21V2, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              4
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            2                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(8P11.21) MUTATED       87     29      8      2     36
  AMP PEAK 21(8P11.21) WILD-TYPE     82    276     11      7      1
D21V3, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           87                             82
  CLUS_2                           29                            276
  CLUS_3                            8                             11
  CLUS_4                            2                              7
  CLUS_5                           36                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8P11.21) MUTATED       69     27     42
  AMP PEAK 21(8P11.21) WILD-TYPE     96     62    129
D21V4, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           69                             96
  CLUS_2                           27                             62
  CLUS_3                           42                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(8P11.21) MUTATED        8     12      5      2      2     11
  AMP PEAK 21(8P11.21) WILD-TYPE     33     25     34     10     39     13
D21V5, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                            8                             33
  CLUS_2                           12                             25
  CLUS_3                            5                             34
  CLUS_4                            2                             10
  CLUS_5                            2                             39
  CLUS_6                           11                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(8P11.21) MUTATED       12     14      6      8
  AMP PEAK 21(8P11.21) WILD-TYPE     55     53     37      9
D21V6, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           12                             55
  CLUS_2                           14                             53
  CLUS_3                            6                             37
  CLUS_4                            8                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8P11.21) MUTATED       30     98     33
  AMP PEAK 21(8P11.21) WILD-TYPE    121    132    116
D21V7, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           30                            121
  CLUS_2                           98                            132
  CLUS_3                           33                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8P11.21) MUTATED       50     77     34
  AMP PEAK 21(8P11.21) WILD-TYPE    166     92    111
D21V8, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           50                            166
  CLUS_2                           77                             92
  CLUS_3                           34                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8P11.21) MUTATED       91     35     33
  AMP PEAK 21(8P11.21) WILD-TYPE    135    108    128
D21V9, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           91                            135
  CLUS_2                           35                            108
  CLUS_3                           33                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(8P11.21) MUTATED       32      7     60     60
  AMP PEAK 21(8P11.21) WILD-TYPE    109     53     63    146
D21V10, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           32                            109
  CLUS_2                            7                             53
  CLUS_3                           60                             63
  CLUS_4                           60                            146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8P11.21) MUTATED       75     30     26
  AMP PEAK 21(8P11.21) WILD-TYPE     97     66    104
D21V11, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           75                             97
  CLUS_2                           30                             66
  CLUS_3                           26                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8P11.21) MUTATED       62     26     43
  AMP PEAK 21(8P11.21) WILD-TYPE     82     89     96
D21V12, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           62                             82
  CLUS_2                           26                             89
  CLUS_3                           43                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(8Q24.21) MUTATED        1      8      3      0
  AMP PEAK 22(8Q24.21) WILD-TYPE     13      9      9     10
D22V1, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            8                              9
  CLUS_3                            3                              9
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(8Q24.21) MUTATED        4      5      1      0      2
  AMP PEAK 22(8Q24.21) WILD-TYPE     10      4      6      7     14
D22V2, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              4
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            2                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(8Q24.21) MUTATED      126     35      8      3     37
  AMP PEAK 22(8Q24.21) WILD-TYPE     43    270     11      6      0
D22V3, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                          126                             43
  CLUS_2                           35                            270
  CLUS_3                            8                             11
  CLUS_4                            3                              6
  CLUS_5                           37                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(8Q24.21) MUTATED      101     32     48
  AMP PEAK 22(8Q24.21) WILD-TYPE     64     57    123
D22V4, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                          101                             64
  CLUS_2                           32                             57
  CLUS_3                           48                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(8Q24.21) MUTATED       12     14      8      2      2     14
  AMP PEAK 22(8Q24.21) WILD-TYPE     29     23     31     10     39     10
D22V5, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                           12                             29
  CLUS_2                           14                             23
  CLUS_3                            8                             31
  CLUS_4                            2                             10
  CLUS_5                            2                             39
  CLUS_6                           14                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(8Q24.21) MUTATED       19     18      6      9
  AMP PEAK 22(8Q24.21) WILD-TYPE     48     49     37      8
D22V6, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                           19                             48
  CLUS_2                           18                             49
  CLUS_3                            6                             37
  CLUS_4                            9                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(8Q24.21) MUTATED       30    137     39
  AMP PEAK 22(8Q24.21) WILD-TYPE    121     93    110
D22V7, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                           30                            121
  CLUS_2                          137                             93
  CLUS_3                           39                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(8Q24.21) MUTATED       55    111     40
  AMP PEAK 22(8Q24.21) WILD-TYPE    161     58    105
D22V8, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                           55                            161
  CLUS_2                          111                             58
  CLUS_3                           40                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(8Q24.21) MUTATED      131     37     38
  AMP PEAK 22(8Q24.21) WILD-TYPE     95    106    123
D22V9, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                          131                             95
  CLUS_2                           37                            106
  CLUS_3                           38                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(8Q24.21) MUTATED       37      8     85     76
  AMP PEAK 22(8Q24.21) WILD-TYPE    104     52     38    130
D22V10, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                           37                            104
  CLUS_2                            8                             52
  CLUS_3                           85                             38
  CLUS_4                           76                            130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(8Q24.21) MUTATED       95     41     33
  AMP PEAK 22(8Q24.21) WILD-TYPE     77     55     97
D22V11, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                           95                             77
  CLUS_2                           41                             55
  CLUS_3                           33                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(8Q24.21) MUTATED       83     30     56
  AMP PEAK 22(8Q24.21) WILD-TYPE     61     85     83
D22V12, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                           83                             61
  CLUS_2                           30                             85
  CLUS_3                           56                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(8Q24.21) MUTATED        1      9      2      0
  AMP PEAK 23(8Q24.21) WILD-TYPE     13      8     10     10
D23V1, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            9                              8
  CLUS_3                            2                             10
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(8Q24.21) MUTATED        4      6      0      0      2
  AMP PEAK 23(8Q24.21) WILD-TYPE     10      3      7      7     14
D23V2, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            6                              3
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            2                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(8Q24.21) MUTATED      127     40      8      3     37
  AMP PEAK 23(8Q24.21) WILD-TYPE     42    265     11      6      0
D23V3, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                          127                             42
  CLUS_2                           40                            265
  CLUS_3                            8                             11
  CLUS_4                            3                              6
  CLUS_5                           37                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(8Q24.21) MUTATED      101     31     53
  AMP PEAK 23(8Q24.21) WILD-TYPE     64     58    118
D23V4, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                          101                             64
  CLUS_2                           31                             58
  CLUS_3                           53                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(8Q24.21) MUTATED       12     17      7      2      2     16
  AMP PEAK 23(8Q24.21) WILD-TYPE     29     20     32     10     39      8
D23V5, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                           12                             29
  CLUS_2                           17                             20
  CLUS_3                            7                             32
  CLUS_4                            2                             10
  CLUS_5                            2                             39
  CLUS_6                           16                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(8Q24.21) MUTATED       23     16      7     10
  AMP PEAK 23(8Q24.21) WILD-TYPE     44     51     36      7
D23V6, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                           23                             44
  CLUS_2                           16                             51
  CLUS_3                            7                             36
  CLUS_4                           10                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(8Q24.21) MUTATED       33    139     40
  AMP PEAK 23(8Q24.21) WILD-TYPE    118     91    109
D23V7, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                           33                            118
  CLUS_2                          139                             91
  CLUS_3                           40                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(8Q24.21) MUTATED       57    114     41
  AMP PEAK 23(8Q24.21) WILD-TYPE    159     55    104
D23V8, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                           57                            159
  CLUS_2                          114                             55
  CLUS_3                           41                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(8Q24.21) MUTATED      136     37     38
  AMP PEAK 23(8Q24.21) WILD-TYPE     90    106    123
D23V9, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                          136                             90
  CLUS_2                           37                            106
  CLUS_3                           38                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(8Q24.21) MUTATED       40     10     86     75
  AMP PEAK 23(8Q24.21) WILD-TYPE    101     50     37    131
D23V10, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                           40                            101
  CLUS_2                           10                             50
  CLUS_3                           86                             37
  CLUS_4                           75                            131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(8Q24.21) MUTATED       98     40     36
  AMP PEAK 23(8Q24.21) WILD-TYPE     74     56     94
D23V11, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                           98                             74
  CLUS_2                           40                             56
  CLUS_3                           36                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(8Q24.21) MUTATED       88     32     54
  AMP PEAK 23(8Q24.21) WILD-TYPE     56     83     85
D23V12, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                           88                             56
  CLUS_2                           32                             83
  CLUS_3                           54                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(9P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(9P24.2) MUTATED        3      4      0      0
  AMP PEAK 24(9P24.2) WILD-TYPE     11     13     12     10
D24V1, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           4                            13
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(9P24.2) MUTATED        4      2      1      0      0
  AMP PEAK 24(9P24.2) WILD-TYPE     10      7      6      7     16
D24V2, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           2                             7
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(9P24.2) MUTATED       59      4      1      0      1
  AMP PEAK 24(9P24.2) WILD-TYPE    110    301     18      9     36
D24V3, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                          59                           110
  CLUS_2                           4                           301
  CLUS_3                           1                            18
  CLUS_4                           0                             9
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(9P24.2) MUTATED       42      7      5
  AMP PEAK 24(9P24.2) WILD-TYPE    123     82    166
D24V4, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                          42                           123
  CLUS_2                           7                            82
  CLUS_3                           5                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(9P24.2) MUTATED        5      9      0      0      1      1
  AMP PEAK 24(9P24.2) WILD-TYPE     36     28     39     12     40     23
D24V5, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           9                            28
  CLUS_3                           0                            39
  CLUS_4                           0                            12
  CLUS_5                           1                            40
  CLUS_6                           1                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(9P24.2) MUTATED       12      2      2      0
  AMP PEAK 24(9P24.2) WILD-TYPE     55     65     41     17
D24V6, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           2                            65
  CLUS_3                           2                            41
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(9P24.2) MUTATED        3     57      5
  AMP PEAK 24(9P24.2) WILD-TYPE    148    173    144
D24V7, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                           3                           148
  CLUS_2                          57                           173
  CLUS_3                           5                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(9P24.2) MUTATED       15     46      4
  AMP PEAK 24(9P24.2) WILD-TYPE    201    123    141
D24V8, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                          15                           201
  CLUS_2                          46                           123
  CLUS_3                           4                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(9P24.2) MUTATED       55      7      2
  AMP PEAK 24(9P24.2) WILD-TYPE    171    136    159
D24V9, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                          55                           171
  CLUS_2                           7                           136
  CLUS_3                           2                           159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(9P24.2) MUTATED        4      2     39     19
  AMP PEAK 24(9P24.2) WILD-TYPE    137     58     84    187
D24V10, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                           4                           137
  CLUS_2                           2                            58
  CLUS_3                          39                            84
  CLUS_4                          19                           187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(9P24.2) MUTATED       35     11      6
  AMP PEAK 24(9P24.2) WILD-TYPE    137     85    124
D24V11, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                          35                           137
  CLUS_2                          11                            85
  CLUS_3                           6                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(9P24.2) MUTATED       31      5     16
  AMP PEAK 24(9P24.2) WILD-TYPE    113    110    123
D24V12, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                          31                           113
  CLUS_2                           5                           110
  CLUS_3                          16                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(9Q34.3) MUTATED        0      4      1      1
  AMP PEAK 25(9Q34.3) WILD-TYPE     14     13     11      9
D25V1, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           4                            13
  CLUS_3                           1                            11
  CLUS_4                           1                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(9Q34.3) MUTATED        0      4      1      0      1
  AMP PEAK 25(9Q34.3) WILD-TYPE     14      5      6      7     15
D25V2, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           4                             5
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           1                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(9Q34.3) MUTATED       35      2      0      1      1
  AMP PEAK 25(9Q34.3) WILD-TYPE    134    303     19      8     36
D25V3, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          35                           134
  CLUS_2                           2                           303
  CLUS_3                           0                            19
  CLUS_4                           1                             8
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(9Q34.3) MUTATED       22      6      2
  AMP PEAK 25(9Q34.3) WILD-TYPE    143     83    169
D25V4, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          22                           143
  CLUS_2                           6                            83
  CLUS_3                           2                           169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(9Q34.3) MUTATED        2      4      0      0      2      2
  AMP PEAK 25(9Q34.3) WILD-TYPE     39     33     39     12     39     22
D25V5, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           4                            33
  CLUS_3                           0                            39
  CLUS_4                           0                            12
  CLUS_5                           2                            39
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(9Q34.3) MUTATED        5      3      1      1
  AMP PEAK 25(9Q34.3) WILD-TYPE     62     64     42     16
D25V6, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                           5                            62
  CLUS_2                           3                            64
  CLUS_3                           1                            42
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(9Q34.3) MUTATED        3     34      1
  AMP PEAK 25(9Q34.3) WILD-TYPE    148    196    148
D25V7, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                           3                           148
  CLUS_2                          34                           196
  CLUS_3                           1                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(9Q34.3) MUTATED        4     32      2
  AMP PEAK 25(9Q34.3) WILD-TYPE    212    137    143
D25V8, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                           4                           212
  CLUS_2                          32                           137
  CLUS_3                           2                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(9Q34.3) MUTATED       28      4      3
  AMP PEAK 25(9Q34.3) WILD-TYPE    198    139    158
D25V9, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          28                           198
  CLUS_2                           4                           139
  CLUS_3                           3                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(9Q34.3) MUTATED        2      1     23      9
  AMP PEAK 25(9Q34.3) WILD-TYPE    139     59    100    197
D25V10, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                           2                           139
  CLUS_2                           1                            59
  CLUS_3                          23                           100
  CLUS_4                           9                           197
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(9Q34.3) MUTATED       16     10      4
  AMP PEAK 25(9Q34.3) WILD-TYPE    156     86    126
D25V11, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          16                           156
  CLUS_2                          10                            86
  CLUS_3                           4                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(9Q34.3) MUTATED       18      2     10
  AMP PEAK 25(9Q34.3) WILD-TYPE    126    113    129
D25V12, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          18                           126
  CLUS_2                           2                           113
  CLUS_3                          10                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(10Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(10Q22.2) MUTATED        2      7      8      2
  AMP PEAK 26(10Q22.2) WILD-TYPE     12     10      4      8
D26V1, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            7                             10
  CLUS_3                            8                              4
  CLUS_4                            2                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(10Q22.2) MUTATED        4      5      2      0      8
  AMP PEAK 26(10Q22.2) WILD-TYPE     10      4      5      7      8
D26V2, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              4
  CLUS_3                            2                              5
  CLUS_4                            0                              7
  CLUS_5                            8                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(10Q22.2) MUTATED       66     45      8      4     20
  AMP PEAK 26(10Q22.2) WILD-TYPE    103    260     11      5     17
D26V3, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           66                            103
  CLUS_2                           45                            260
  CLUS_3                            8                             11
  CLUS_4                            4                              5
  CLUS_5                           20                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(10Q22.2) MUTATED       50     18     41
  AMP PEAK 26(10Q22.2) WILD-TYPE    115     71    130
D26V4, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           50                            115
  CLUS_2                           18                             71
  CLUS_3                           41                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(10Q22.2) MUTATED        9      9     10      2     14     11
  AMP PEAK 26(10Q22.2) WILD-TYPE     32     28     29     10     27     13
D26V5, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                            9                             32
  CLUS_2                            9                             28
  CLUS_3                           10                             29
  CLUS_4                            2                             10
  CLUS_5                           14                             27
  CLUS_6                           11                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(10Q22.2) MUTATED       18     20     10      7
  AMP PEAK 26(10Q22.2) WILD-TYPE     49     47     33     10
D26V6, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           18                             49
  CLUS_2                           20                             47
  CLUS_3                           10                             33
  CLUS_4                            7                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(10Q22.2) MUTATED       28     74     39
  AMP PEAK 26(10Q22.2) WILD-TYPE    123    156    110
D26V7, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           28                            123
  CLUS_2                           74                            156
  CLUS_3                           39                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(10Q22.2) MUTATED       43     60     38
  AMP PEAK 26(10Q22.2) WILD-TYPE    173    109    107
D26V8, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           43                            173
  CLUS_2                           60                            109
  CLUS_3                           38                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(10Q22.2) MUTATED       66     34     41
  AMP PEAK 26(10Q22.2) WILD-TYPE    160    109    120
D26V9, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           66                            160
  CLUS_2                           34                            109
  CLUS_3                           41                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(10Q22.2) MUTATED       40     20     43     38
  AMP PEAK 26(10Q22.2) WILD-TYPE    101     40     80    168
D26V10, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           40                            101
  CLUS_2                           20                             40
  CLUS_3                           43                             80
  CLUS_4                           38                            168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(10Q22.2) MUTATED       43     24     31
  AMP PEAK 26(10Q22.2) WILD-TYPE    129     72     99
D26V11, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           43                            129
  CLUS_2                           24                             72
  CLUS_3                           31                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(10Q22.2) MUTATED       38     33     27
  AMP PEAK 26(10Q22.2) WILD-TYPE    106     82    112
D26V12, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           38                            106
  CLUS_2                           33                             82
  CLUS_3                           27                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(11P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(11P11.2) MUTATED        0      6      0      0
  AMP PEAK 27(11P11.2) WILD-TYPE     14     11     12     10
D27V1, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(11P11.2) MUTATED        2      4      0      0      0
  AMP PEAK 27(11P11.2) WILD-TYPE     12      5      7      7     16
D27V2, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(11P11.2) MUTATED       43      1      4      0      3
  AMP PEAK 27(11P11.2) WILD-TYPE    126    304     15      9     34
D27V3, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           43                            126
  CLUS_2                            1                            304
  CLUS_3                            4                             15
  CLUS_4                            0                              9
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11P11.2) MUTATED       30      9      4
  AMP PEAK 27(11P11.2) WILD-TYPE    135     80    167
D27V4, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           30                            135
  CLUS_2                            9                             80
  CLUS_3                            4                            167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(11P11.2) MUTATED        4      4      1      0      1      6
  AMP PEAK 27(11P11.2) WILD-TYPE     37     33     38     12     40     18
D27V5, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            4                             33
  CLUS_3                            1                             38
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            6                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(11P11.2) MUTATED        6      5      1      4
  AMP PEAK 27(11P11.2) WILD-TYPE     61     62     42     13
D27V6, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                            6                             61
  CLUS_2                            5                             62
  CLUS_3                            1                             42
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11P11.2) MUTATED        3     41      6
  AMP PEAK 27(11P11.2) WILD-TYPE    148    189    143
D27V7, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                            3                            148
  CLUS_2                           41                            189
  CLUS_3                            6                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11P11.2) MUTATED        8     36      6
  AMP PEAK 27(11P11.2) WILD-TYPE    208    133    139
D27V8, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                            8                            208
  CLUS_2                           36                            133
  CLUS_3                            6                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11P11.2) MUTATED       41      3      6
  AMP PEAK 27(11P11.2) WILD-TYPE    185    140    155
D27V9, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           41                            185
  CLUS_2                            3                            140
  CLUS_3                            6                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(11P11.2) MUTATED        4      2     31     13
  AMP PEAK 27(11P11.2) WILD-TYPE    137     58     92    193
D27V10, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                            4                            137
  CLUS_2                            2                             58
  CLUS_3                           31                             92
  CLUS_4                           13                            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11P11.2) MUTATED       24     10      6
  AMP PEAK 27(11P11.2) WILD-TYPE    148     86    124
D27V11, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           24                            148
  CLUS_2                           10                             86
  CLUS_3                            6                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11P11.2) MUTATED       18      5     17
  AMP PEAK 27(11P11.2) WILD-TYPE    126    110    122
D27V12, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           18                            126
  CLUS_2                            5                            110
  CLUS_3                           17                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(11Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(11Q13.2) MUTATED        0      6      0      0
  AMP PEAK 28(11Q13.2) WILD-TYPE     14     11     12     10
D28V1, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(11Q13.2) MUTATED        2      4      0      0      0
  AMP PEAK 28(11Q13.2) WILD-TYPE     12      5      7      7     16
D28V2, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(11Q13.2) MUTATED       59      5      5      0      5
  AMP PEAK 28(11Q13.2) WILD-TYPE    110    300     14      9     32
D28V3, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                           59                            110
  CLUS_2                            5                            300
  CLUS_3                            5                             14
  CLUS_4                            0                              9
  CLUS_5                            5                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(11Q13.2) MUTATED       43      8     12
  AMP PEAK 28(11Q13.2) WILD-TYPE    122     81    159
D28V4, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                           43                            122
  CLUS_2                            8                             81
  CLUS_3                           12                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(11Q13.2) MUTATED        4      6      3      1      1      6
  AMP PEAK 28(11Q13.2) WILD-TYPE     37     31     36     11     40     18
D28V5, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            6                             31
  CLUS_3                            3                             36
  CLUS_4                            1                             11
  CLUS_5                            1                             40
  CLUS_6                            6                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(11Q13.2) MUTATED        5      9      3      4
  AMP PEAK 28(11Q13.2) WILD-TYPE     62     58     40     13
D28V6, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                            5                             62
  CLUS_2                            9                             58
  CLUS_3                            3                             40
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(11Q13.2) MUTATED        5     53     15
  AMP PEAK 28(11Q13.2) WILD-TYPE    146    177    134
D28V7, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                            5                            146
  CLUS_2                           53                            177
  CLUS_3                           15                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(11Q13.2) MUTATED       17     41     15
  AMP PEAK 28(11Q13.2) WILD-TYPE    199    128    130
D28V8, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                           17                            199
  CLUS_2                           41                            128
  CLUS_3                           15                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(11Q13.2) MUTATED       48      9     15
  AMP PEAK 28(11Q13.2) WILD-TYPE    178    134    146
D28V9, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                           48                            178
  CLUS_2                            9                            134
  CLUS_3                           15                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(11Q13.2) MUTATED       12      2     34     24
  AMP PEAK 28(11Q13.2) WILD-TYPE    129     58     89    182
D28V10, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                           12                            129
  CLUS_2                            2                             58
  CLUS_3                           34                             89
  CLUS_4                           24                            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(11Q13.2) MUTATED       34     11     14
  AMP PEAK 28(11Q13.2) WILD-TYPE    138     85    116
D28V11, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                           34                            138
  CLUS_2                           11                             85
  CLUS_3                           14                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(11Q13.2) MUTATED       32     13     14
  AMP PEAK 28(11Q13.2) WILD-TYPE    112    102    125
D28V12, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                           32                            112
  CLUS_2                           13                            102
  CLUS_3                           14                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(11Q14.1) MUTATED        1      3      0      0
  AMP PEAK 29(11Q14.1) WILD-TYPE     13     14     12     10
D29V1, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(11Q14.1) MUTATED        2      2      0      0      0
  AMP PEAK 29(11Q14.1) WILD-TYPE     12      7      7      7     16
D29V2, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(11Q14.1) MUTATED       47      3      4      0      5
  AMP PEAK 29(11Q14.1) WILD-TYPE    122    302     15      9     32
D29V3, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                           47                            122
  CLUS_2                            3                            302
  CLUS_3                            4                             15
  CLUS_4                            0                              9
  CLUS_5                            5                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(11Q14.1) MUTATED       35      7      8
  AMP PEAK 29(11Q14.1) WILD-TYPE    130     82    163
D29V4, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                           35                            130
  CLUS_2                            7                             82
  CLUS_3                            8                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(11Q14.1) MUTATED        3      3      3      1      1      4
  AMP PEAK 29(11Q14.1) WILD-TYPE     38     34     36     11     40     20
D29V5, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            3                             34
  CLUS_3                            3                             36
  CLUS_4                            1                             11
  CLUS_5                            1                             40
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(11Q14.1) MUTATED        3      7      2      3
  AMP PEAK 29(11Q14.1) WILD-TYPE     64     60     41     14
D29V6, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                            3                             64
  CLUS_2                            7                             60
  CLUS_3                            2                             41
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(11Q14.1) MUTATED        5     44      9
  AMP PEAK 29(11Q14.1) WILD-TYPE    146    186    140
D29V7, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                            5                            146
  CLUS_2                           44                            186
  CLUS_3                            9                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(11Q14.1) MUTATED       12     37      9
  AMP PEAK 29(11Q14.1) WILD-TYPE    204    132    136
D29V8, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                           12                            204
  CLUS_2                           37                            132
  CLUS_3                            9                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(11Q14.1) MUTATED       41      6     12
  AMP PEAK 29(11Q14.1) WILD-TYPE    185    137    149
D29V9, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                           41                            185
  CLUS_2                            6                            137
  CLUS_3                           12                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(11Q14.1) MUTATED        8      2     29     20
  AMP PEAK 29(11Q14.1) WILD-TYPE    133     58     94    186
D29V10, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                            8                            133
  CLUS_2                            2                             58
  CLUS_3                           29                             94
  CLUS_4                           20                            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(11Q14.1) MUTATED       30      9      9
  AMP PEAK 29(11Q14.1) WILD-TYPE    142     87    121
D29V11, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                           30                            142
  CLUS_2                            9                             87
  CLUS_3                            9                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(11Q14.1) MUTATED       26      9     13
  AMP PEAK 29(11Q14.1) WILD-TYPE    118    106    126
D29V12, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                           26                            118
  CLUS_2                            9                            106
  CLUS_3                           13                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = AMP PEAK 30(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(12P12.1) MUTATED        1      3      3      0
  AMP PEAK 30(12P12.1) WILD-TYPE     13     14      9     10
D30V1, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            3                              9
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(12P12.1) MUTATED        3      2      1      0      1
  AMP PEAK 30(12P12.1) WILD-TYPE     11      7      6      7     15
D30V2, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            2                              7
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(12P12.1) MUTATED       61     16      7      3      6
  AMP PEAK 30(12P12.1) WILD-TYPE    108    289     12      6     31
D30V3, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           61                            108
  CLUS_2                           16                            289
  CLUS_3                            7                             12
  CLUS_4                            3                              6
  CLUS_5                            6                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12P12.1) MUTATED       55     12     10
  AMP PEAK 30(12P12.1) WILD-TYPE    110     77    161
D30V4, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           55                            110
  CLUS_2                           12                             77
  CLUS_3                           10                            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(12P12.1) MUTATED        5      7      5      0      4      5
  AMP PEAK 30(12P12.1) WILD-TYPE     36     30     34     12     37     19
D30V5, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            7                             30
  CLUS_3                            5                             34
  CLUS_4                            0                             12
  CLUS_5                            4                             37
  CLUS_6                            5                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(12P12.1) MUTATED       10      9      5      2
  AMP PEAK 30(12P12.1) WILD-TYPE     57     58     38     15
D30V6, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                            9                             58
  CLUS_3                            5                             38
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12P12.1) MUTATED       12     67     11
  AMP PEAK 30(12P12.1) WILD-TYPE    139    163    138
D30V7, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           12                            139
  CLUS_2                           67                            163
  CLUS_3                           11                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12P12.1) MUTATED       22     56     12
  AMP PEAK 30(12P12.1) WILD-TYPE    194    113    133
D30V8, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           22                            194
  CLUS_2                           56                            113
  CLUS_3                           12                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12P12.1) MUTATED       65     16     12
  AMP PEAK 30(12P12.1) WILD-TYPE    161    127    149
D30V9, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           65                            161
  CLUS_2                           16                            127
  CLUS_3                           12                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(12P12.1) MUTATED       13      6     46     28
  AMP PEAK 30(12P12.1) WILD-TYPE    128     54     77    178
D30V10, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           13                            128
  CLUS_2                            6                             54
  CLUS_3                           46                             77
  CLUS_4                           28                            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12P12.1) MUTATED       47     13     14
  AMP PEAK 30(12P12.1) WILD-TYPE    125     83    116
D30V11, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           47                            125
  CLUS_2                           13                             83
  CLUS_3                           14                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12P12.1) MUTATED       44     10     20
  AMP PEAK 30(12P12.1) WILD-TYPE    100    105    119
D30V12, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           44                            100
  CLUS_2                           10                            105
  CLUS_3                           20                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = AMP PEAK 31(12Q13.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(12Q13.11) MUTATED        2      4      3      0
  AMP PEAK 31(12Q13.11) WILD-TYPE     12     13      9     10
D31V1, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             4                              13
  CLUS_3                             3                               9
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(12Q13.11) MUTATED        4      3      1      0      1
  AMP PEAK 31(12Q13.11) WILD-TYPE     10      6      6      7     15
D31V2, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             3                               6
  CLUS_3                             1                               6
  CLUS_4                             0                               7
  CLUS_5                             1                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(12Q13.11) MUTATED       59     13      7      3      5
  AMP PEAK 31(12Q13.11) WILD-TYPE    110    292     12      6     32
D31V3, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                            59                             110
  CLUS_2                            13                             292
  CLUS_3                             7                              12
  CLUS_4                             3                               6
  CLUS_5                             5                              32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(12Q13.11) MUTATED       49     15      7
  AMP PEAK 31(12Q13.11) WILD-TYPE    116     74    164
D31V4, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                            49                             116
  CLUS_2                            15                              74
  CLUS_3                             7                             164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 31(12Q13.11) MUTATED        5      7      4      0      3      3
  AMP PEAK 31(12Q13.11) WILD-TYPE     36     30     35     12     38     21
D31V5, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                             5                              36
  CLUS_2                             7                              30
  CLUS_3                             4                              35
  CLUS_4                             0                              12
  CLUS_5                             3                              38
  CLUS_6                             3                              21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(12Q13.11) MUTATED       10      7      3      2
  AMP PEAK 31(12Q13.11) WILD-TYPE     57     60     40     15
D31V6, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                            10                              57
  CLUS_2                             7                              60
  CLUS_3                             3                              40
  CLUS_4                             2                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(12Q13.11) MUTATED        9     66     10
  AMP PEAK 31(12Q13.11) WILD-TYPE    142    164    139
D31V7, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                             9                             142
  CLUS_2                            66                             164
  CLUS_3                            10                             139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(12Q13.11) MUTATED       18     57     10
  AMP PEAK 31(12Q13.11) WILD-TYPE    198    112    135
D31V8, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                            18                             198
  CLUS_2                            57                             112
  CLUS_3                            10                             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(12Q13.11) MUTATED       64     12     11
  AMP PEAK 31(12Q13.11) WILD-TYPE    162    131    150
D31V9, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                            64                             162
  CLUS_2                            12                             131
  CLUS_3                            11                             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(12Q13.11) MUTATED       12      4     47     24
  AMP PEAK 31(12Q13.11) WILD-TYPE    129     56     76    182
D31V10, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                            12                             129
  CLUS_2                             4                              56
  CLUS_3                            47                              76
  CLUS_4                            24                             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(12Q13.11) MUTATED       41     14     11
  AMP PEAK 31(12Q13.11) WILD-TYPE    131     82    119
D31V11, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                            41                             131
  CLUS_2                            14                              82
  CLUS_3                            11                             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(12Q13.11) MUTATED       37      9     20
  AMP PEAK 31(12Q13.11) WILD-TYPE    107    106    119
D31V12, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                            37                             107
  CLUS_2                             9                             106
  CLUS_3                            20                             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = AMP PEAK 32(12Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(12Q13.2) MUTATED        2      5      4      0
  AMP PEAK 32(12Q13.2) WILD-TYPE     12     12      8     10
D32V1, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            5                             12
  CLUS_3                            4                              8
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(12Q13.2) MUTATED        4      4      2      0      1
  AMP PEAK 32(12Q13.2) WILD-TYPE     10      5      5      7     15
D32V2, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            4                              5
  CLUS_3                            2                              5
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(12Q13.2) MUTATED       68     16      6      3      7
  AMP PEAK 32(12Q13.2) WILD-TYPE    101    289     13      6     30
D32V3, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                           68                            101
  CLUS_2                           16                            289
  CLUS_3                            6                             13
  CLUS_4                            3                              6
  CLUS_5                            7                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(12Q13.2) MUTATED       55     14     13
  AMP PEAK 32(12Q13.2) WILD-TYPE    110     75    158
D32V4, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                           55                            110
  CLUS_2                           14                             75
  CLUS_3                           13                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 32(12Q13.2) MUTATED        6      8      4      0      3      4
  AMP PEAK 32(12Q13.2) WILD-TYPE     35     29     35     12     38     20
D32V5, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            8                             29
  CLUS_3                            4                             35
  CLUS_4                            0                             12
  CLUS_5                            3                             38
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(12Q13.2) MUTATED       10     10      3      2
  AMP PEAK 32(12Q13.2) WILD-TYPE     57     57     40     15
D32V6, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                           10                             57
  CLUS_3                            3                             40
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(12Q13.2) MUTATED        9     74     14
  AMP PEAK 32(12Q13.2) WILD-TYPE    142    156    135
D32V7, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                            9                            142
  CLUS_2                           74                            156
  CLUS_3                           14                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(12Q13.2) MUTATED       22     61     14
  AMP PEAK 32(12Q13.2) WILD-TYPE    194    108    131
D32V8, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                           22                            194
  CLUS_2                           61                            108
  CLUS_3                           14                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(12Q13.2) MUTATED       71     13     14
  AMP PEAK 32(12Q13.2) WILD-TYPE    155    130    147
D32V9, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                           71                            155
  CLUS_2                           13                            130
  CLUS_3                           14                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(12Q13.2) MUTATED       15      4     52     27
  AMP PEAK 32(12Q13.2) WILD-TYPE    126     56     71    179
D32V10, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                           15                            126
  CLUS_2                            4                             56
  CLUS_3                           52                             71
  CLUS_4                           27                            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(12Q13.2) MUTATED       53     12     13
  AMP PEAK 32(12Q13.2) WILD-TYPE    119     84    117
D32V11, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                           53                            119
  CLUS_2                           12                             84
  CLUS_3                           13                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(12Q13.2) MUTATED       44     13     21
  AMP PEAK 32(12Q13.2) WILD-TYPE    100    102    118
D32V12, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                           44                            100
  CLUS_2                           13                            102
  CLUS_3                           21                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = AMP PEAK 33(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(13Q34) MUTATED        1      2      0      0
  AMP PEAK 33(13Q34) WILD-TYPE     13     15     12     10
D33V1, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          2                           15
  CLUS_3                          0                           12
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(13Q34) MUTATED        1      2      0      0      0
  AMP PEAK 33(13Q34) WILD-TYPE     13      7      7      7     16
D33V2, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          2                            7
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(13Q34) MUTATED       52      3      0      1      2
  AMP PEAK 33(13Q34) WILD-TYPE    117    302     19      8     35
D33V3, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                         52                          117
  CLUS_2                          3                          302
  CLUS_3                          0                           19
  CLUS_4                          1                            8
  CLUS_5                          2                           35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(13Q34) MUTATED       38     11      4
  AMP PEAK 33(13Q34) WILD-TYPE    127     78    167
D33V4, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                         38                          127
  CLUS_2                         11                           78
  CLUS_3                          4                          167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 33(13Q34) MUTATED        2      4      0      0      1      2
  AMP PEAK 33(13Q34) WILD-TYPE     39     33     39     12     40     22
D33V5, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                          2                           39
  CLUS_2                          4                           33
  CLUS_3                          0                           39
  CLUS_4                          0                           12
  CLUS_5                          1                           40
  CLUS_6                          2                           22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(13Q34) MUTATED        6      1      0      2
  AMP PEAK 33(13Q34) WILD-TYPE     61     66     43     15
D33V6, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                          6                           61
  CLUS_2                          1                           66
  CLUS_3                          0                           43
  CLUS_4                          2                           15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(13Q34) MUTATED        3     52      3
  AMP PEAK 33(13Q34) WILD-TYPE    148    178    146
D33V7, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                          3                          148
  CLUS_2                         52                          178
  CLUS_3                          3                          146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(13Q34) MUTATED        5     51      2
  AMP PEAK 33(13Q34) WILD-TYPE    211    118    143
D33V8, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                          5                          211
  CLUS_2                         51                          118
  CLUS_3                          2                          143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(13Q34) MUTATED       52      2      4
  AMP PEAK 33(13Q34) WILD-TYPE    174    141    157
D33V9, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                         52                          174
  CLUS_2                          2                          141
  CLUS_3                          4                          157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(13Q34) MUTATED        5      0     40     13
  AMP PEAK 33(13Q34) WILD-TYPE    136     60     83    193
D33V10, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                          5                          136
  CLUS_2                          0                           60
  CLUS_3                         40                           83
  CLUS_4                         13                          193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(13Q34) MUTATED       33     13      6
  AMP PEAK 33(13Q34) WILD-TYPE    139     83    124
D33V11, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                         33                          139
  CLUS_2                         13                           83
  CLUS_3                          6                          124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(13Q34) MUTATED       32      3     17
  AMP PEAK 33(13Q34) WILD-TYPE    112    112    122
D33V12, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                         32                          112
  CLUS_2                          3                          112
  CLUS_3                         17                          122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = AMP PEAK 34(14Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(14Q24.3) MUTATED        1      6      1      0
  AMP PEAK 34(14Q24.3) WILD-TYPE     13     11     11     10
D34V1, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            6                             11
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(14Q24.3) MUTATED        1      5      0      1      1
  AMP PEAK 34(14Q24.3) WILD-TYPE     13      4      7      6     15
D34V2, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            5                              4
  CLUS_3                            0                              7
  CLUS_4                            1                              6
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(14Q24.3) MUTATED       52      4      2      0      6
  AMP PEAK 34(14Q24.3) WILD-TYPE    117    301     17      9     31
D34V3, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                           52                            117
  CLUS_2                            4                            301
  CLUS_3                            2                             17
  CLUS_4                            0                              9
  CLUS_5                            6                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(14Q24.3) MUTATED       37      9      8
  AMP PEAK 34(14Q24.3) WILD-TYPE    128     80    163
D34V4, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                           37                            128
  CLUS_2                            9                             80
  CLUS_3                            8                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 34(14Q24.3) MUTATED        5      5      1      1      0      3
  AMP PEAK 34(14Q24.3) WILD-TYPE     36     32     38     11     41     21
D34V5, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            5                             32
  CLUS_3                            1                             38
  CLUS_4                            1                             11
  CLUS_5                            0                             41
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(14Q24.3) MUTATED        8      3      2      2
  AMP PEAK 34(14Q24.3) WILD-TYPE     59     64     41     15
D34V6, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                            3                             64
  CLUS_3                            2                             41
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(14Q24.3) MUTATED        1     54      7
  AMP PEAK 34(14Q24.3) WILD-TYPE    150    176    142
D34V7, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                            1                            150
  CLUS_2                           54                            176
  CLUS_3                            7                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(14Q24.3) MUTATED        7     48      7
  AMP PEAK 34(14Q24.3) WILD-TYPE    209    121    138
D34V8, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                            7                            209
  CLUS_2                           48                            121
  CLUS_3                            7                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(14Q24.3) MUTATED       46      7      9
  AMP PEAK 34(14Q24.3) WILD-TYPE    180    136    152
D34V9, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                           46                            180
  CLUS_2                            7                            136
  CLUS_3                            9                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(14Q24.3) MUTATED        9      2     36     15
  AMP PEAK 34(14Q24.3) WILD-TYPE    132     58     87    191
D34V10, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                            9                            132
  CLUS_2                            2                             58
  CLUS_3                           36                             87
  CLUS_4                           15                            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(14Q24.3) MUTATED       28     15     10
  AMP PEAK 34(14Q24.3) WILD-TYPE    144     81    120
D34V11, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                           28                            144
  CLUS_2                           15                             81
  CLUS_3                           10                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(14Q24.3) MUTATED       23      8     22
  AMP PEAK 34(14Q24.3) WILD-TYPE    121    107    117
D34V12, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                           23                            121
  CLUS_2                            8                            107
  CLUS_3                           22                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = AMP PEAK 35(14Q32.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(14Q32.33) MUTATED        2      4      1      0
  AMP PEAK 35(14Q32.33) WILD-TYPE     12     13     11     10
D35V1, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             4                              13
  CLUS_3                             1                              11
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(14Q32.33) MUTATED        2      3      0      1      1
  AMP PEAK 35(14Q32.33) WILD-TYPE     12      6      7      6     15
D35V2, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             3                               6
  CLUS_3                             0                               7
  CLUS_4                             1                               6
  CLUS_5                             1                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(14Q32.33) MUTATED       67      4      2      0      6
  AMP PEAK 35(14Q32.33) WILD-TYPE    102    301     17      9     31
D35V3, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                            67                             102
  CLUS_2                             4                             301
  CLUS_3                             2                              17
  CLUS_4                             0                               9
  CLUS_5                             6                              31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(14Q32.33) MUTATED       48     11      9
  AMP PEAK 35(14Q32.33) WILD-TYPE    117     78    162
D35V4, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                            48                             117
  CLUS_2                            11                              78
  CLUS_3                             9                             162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 35(14Q32.33) MUTATED        4      5      2      1      0      4
  AMP PEAK 35(14Q32.33) WILD-TYPE     37     32     37     11     41     20
D35V5, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                             4                              37
  CLUS_2                             5                              32
  CLUS_3                             2                              37
  CLUS_4                             1                              11
  CLUS_5                             0                              41
  CLUS_6                             4                              20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(14Q32.33) MUTATED        7      5      2      2
  AMP PEAK 35(14Q32.33) WILD-TYPE     60     62     41     15
D35V6, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                             7                              60
  CLUS_2                             5                              62
  CLUS_3                             2                              41
  CLUS_4                             2                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(14Q32.33) MUTATED        2     60     13
  AMP PEAK 35(14Q32.33) WILD-TYPE    149    170    136
D35V7, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                             2                             149
  CLUS_2                            60                             170
  CLUS_3                            13                             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(14Q32.33) MUTATED       13     49     13
  AMP PEAK 35(14Q32.33) WILD-TYPE    203    120    132
D35V8, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                            13                             203
  CLUS_2                            49                             120
  CLUS_3                            13                             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(14Q32.33) MUTATED       57      7     14
  AMP PEAK 35(14Q32.33) WILD-TYPE    169    136    147
D35V9, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                            57                             169
  CLUS_2                             7                             136
  CLUS_3                            14                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(14Q32.33) MUTATED       11      2     42     23
  AMP PEAK 35(14Q32.33) WILD-TYPE    130     58     81    183
D35V10, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                            11                             130
  CLUS_2                             2                              58
  CLUS_3                            42                              81
  CLUS_4                            23                             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(14Q32.33) MUTATED       41     14     12
  AMP PEAK 35(14Q32.33) WILD-TYPE    131     82    118
D35V11, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                            41                             131
  CLUS_2                            14                              82
  CLUS_3                            12                             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(14Q32.33) MUTATED       33     12     22
  AMP PEAK 35(14Q32.33) WILD-TYPE    111    103    117
D35V12, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                            33                             111
  CLUS_2                            12                             103
  CLUS_3                            22                             117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = AMP PEAK 36(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(15Q26.3) MUTATED        0      1      0      0
  AMP PEAK 36(15Q26.3) WILD-TYPE     14     16     12     10
D36V1, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 36(15Q26.3) MUTATED"
clus
  AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE 
                             1                             52 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(15Q26.3) MUTATED        1      0      0      0      0
  AMP PEAK 36(15Q26.3) WILD-TYPE     13      9      7      7     16
D36V2, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 36(15Q26.3) MUTATED"
clus
  AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE 
                             1                             52 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(15Q26.3) MUTATED       33      2      1      0      2
  AMP PEAK 36(15Q26.3) WILD-TYPE    136    303     18      9     35
D36V3, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                           33                            136
  CLUS_2                            2                            303
  CLUS_3                            1                             18
  CLUS_4                            0                              9
  CLUS_5                            2                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(15Q26.3) MUTATED       22      6      7
  AMP PEAK 36(15Q26.3) WILD-TYPE    143     83    164
D36V4, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                           22                            143
  CLUS_2                            6                             83
  CLUS_3                            7                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 36(15Q26.3) MUTATED        4      1      0      0      0      2
  AMP PEAK 36(15Q26.3) WILD-TYPE     37     36     39     12     41     22
D36V5, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            1                             36
  CLUS_3                            0                             39
  CLUS_4                            0                             12
  CLUS_5                            0                             41
  CLUS_6                            2                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(15Q26.3) MUTATED        4      2      1      0
  AMP PEAK 36(15Q26.3) WILD-TYPE     63     65     42     17
D36V6, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                            4                             63
  CLUS_2                            2                             65
  CLUS_3                            1                             42
  CLUS_4                            0                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(15Q26.3) MUTATED        3     32      3
  AMP PEAK 36(15Q26.3) WILD-TYPE    148    198    146
D36V7, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                            3                            148
  CLUS_2                           32                            198
  CLUS_3                            3                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(15Q26.3) MUTATED        9     26      3
  AMP PEAK 36(15Q26.3) WILD-TYPE    207    143    142
D36V8, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                            9                            207
  CLUS_2                           26                            143
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(15Q26.3) MUTATED       30      5      3
  AMP PEAK 36(15Q26.3) WILD-TYPE    196    138    158
D36V9, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                           30                            196
  CLUS_2                            5                            138
  CLUS_3                            3                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(15Q26.3) MUTATED        4      1     21     12
  AMP PEAK 36(15Q26.3) WILD-TYPE    137     59    102    194
D36V10, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                            4                            137
  CLUS_2                            1                             59
  CLUS_3                           21                            102
  CLUS_4                           12                            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(15Q26.3) MUTATED       20      5      8
  AMP PEAK 36(15Q26.3) WILD-TYPE    152     91    122
D36V11, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                           20                            152
  CLUS_2                            5                             91
  CLUS_3                            8                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(15Q26.3) MUTATED       15      5     13
  AMP PEAK 36(15Q26.3) WILD-TYPE    129    110    126
D36V12, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                           15                            129
  CLUS_2                            5                            110
  CLUS_3                           13                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = AMP PEAK 37(16P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 37(16P11.2) MUTATED        0      5      0      0
  AMP PEAK 37(16P11.2) WILD-TYPE     14     12     12     10
D37V1, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            5                             12
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 37(16P11.2) MUTATED        1      4      0      0      0
  AMP PEAK 37(16P11.2) WILD-TYPE     13      5      7      7     16
D37V2, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 37(16P11.2) MUTATED       61      1      1      0      3
  AMP PEAK 37(16P11.2) WILD-TYPE    108    304     18      9     34
D37V3, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                           61                            108
  CLUS_2                            1                            304
  CLUS_3                            1                             18
  CLUS_4                            0                              9
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(16P11.2) MUTATED       39     10      8
  AMP PEAK 37(16P11.2) WILD-TYPE    126     79    163
D37V4, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                           39                            126
  CLUS_2                           10                             79
  CLUS_3                            8                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 37(16P11.2) MUTATED        6      6      1      0      2      5
  AMP PEAK 37(16P11.2) WILD-TYPE     35     31     38     12     39     19
D37V5, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            6                             31
  CLUS_3                            1                             38
  CLUS_4                            0                             12
  CLUS_5                            2                             39
  CLUS_6                            5                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 37(16P11.2) MUTATED       11      6      1      2
  AMP PEAK 37(16P11.2) WILD-TYPE     56     61     42     15
D37V6, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                           11                             56
  CLUS_2                            6                             61
  CLUS_3                            1                             42
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(16P11.2) MUTATED        5     57      4
  AMP PEAK 37(16P11.2) WILD-TYPE    146    173    145
D37V7, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                            5                            146
  CLUS_2                           57                            173
  CLUS_3                            4                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(16P11.2) MUTATED       12     50      4
  AMP PEAK 37(16P11.2) WILD-TYPE    204    119    141
D37V8, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                           12                            204
  CLUS_2                           50                            119
  CLUS_3                            4                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(16P11.2) MUTATED       52      6      5
  AMP PEAK 37(16P11.2) WILD-TYPE    174    137    156
D37V9, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                           52                            174
  CLUS_2                            6                            137
  CLUS_3                            5                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 37(16P11.2) MUTATED        5      3     39     16
  AMP PEAK 37(16P11.2) WILD-TYPE    136     57     84    190
D37V10, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                            5                            136
  CLUS_2                            3                             57
  CLUS_3                           39                             84
  CLUS_4                           16                            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(16P11.2) MUTATED       33     11      8
  AMP PEAK 37(16P11.2) WILD-TYPE    139     85    122
D37V11, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                           33                            139
  CLUS_2                           11                             85
  CLUS_3                            8                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(16P11.2) MUTATED       29      5     18
  AMP PEAK 37(16P11.2) WILD-TYPE    115    110    121
D37V12, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                           29                            115
  CLUS_2                            5                            110
  CLUS_3                           18                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = AMP PEAK 38(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 38(17Q11.2) MUTATED        1      4      0      0
  AMP PEAK 38(17Q11.2) WILD-TYPE     13     13     12     10
D38V1, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                             13
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 38(17Q11.2) MUTATED        2      3      0      0      0
  AMP PEAK 38(17Q11.2) WILD-TYPE     12      6      7      7     16
D38V2, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            3                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 38(17Q11.2) MUTATED       64      4      0      1      2
  AMP PEAK 38(17Q11.2) WILD-TYPE    105    301     19      8     35
D38V3, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                           64                            105
  CLUS_2                            4                            301
  CLUS_3                            0                             19
  CLUS_4                            1                              8
  CLUS_5                            2                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(17Q11.2) MUTATED       54      6      3
  AMP PEAK 38(17Q11.2) WILD-TYPE    111     83    168
D38V4, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                           54                            111
  CLUS_2                            6                             83
  CLUS_3                            3                            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 38(17Q11.2) MUTATED        5      6      0      1      0      1
  AMP PEAK 38(17Q11.2) WILD-TYPE     36     31     39     11     41     23
D38V5, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            6                             31
  CLUS_3                            0                             39
  CLUS_4                            1                             11
  CLUS_5                            0                             41
  CLUS_6                            1                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 38(17Q11.2) MUTATED        9      2      1      1
  AMP PEAK 38(17Q11.2) WILD-TYPE     58     65     42     16
D38V6, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            2                             65
  CLUS_3                            1                             42
  CLUS_4                            1                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(17Q11.2) MUTATED        2     63      4
  AMP PEAK 38(17Q11.2) WILD-TYPE    149    167    145
D38V7, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                            2                            149
  CLUS_2                           63                            167
  CLUS_3                            4                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(17Q11.2) MUTATED        8     58      3
  AMP PEAK 38(17Q11.2) WILD-TYPE    208    111    142
D38V8, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                            8                            208
  CLUS_2                           58                            111
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(17Q11.2) MUTATED       58      8      2
  AMP PEAK 38(17Q11.2) WILD-TYPE    168    135    159
D38V9, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                           58                            168
  CLUS_2                            8                            135
  CLUS_3                            2                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 38(17Q11.2) MUTATED        4      1     46     17
  AMP PEAK 38(17Q11.2) WILD-TYPE    137     59     77    189
D38V10, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                            4                            137
  CLUS_2                            1                             59
  CLUS_3                           46                             77
  CLUS_4                           17                            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(17Q11.2) MUTATED       41     12      5
  AMP PEAK 38(17Q11.2) WILD-TYPE    131     84    125
D38V11, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                           41                            131
  CLUS_2                           12                             84
  CLUS_3                            5                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(17Q11.2) MUTATED       37      5     16
  AMP PEAK 38(17Q11.2) WILD-TYPE    107    110    123
D38V12, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                           37                            107
  CLUS_2                            5                            110
  CLUS_3                           16                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = AMP PEAK 39(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 39(17Q12) MUTATED        0      4      1      0
  AMP PEAK 39(17Q12) WILD-TYPE     14     13     11     10
D39V1, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          4                           13
  CLUS_3                          1                           11
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 39(17Q12) MUTATED        0      4      1      0      0
  AMP PEAK 39(17Q12) WILD-TYPE     14      5      6      7     16
D39V2, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          4                            5
  CLUS_3                          1                            6
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 39(17Q12) MUTATED       67      5      0      1      2
  AMP PEAK 39(17Q12) WILD-TYPE    102    300     19      8     35
D39V3, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                         67                          102
  CLUS_2                          5                          300
  CLUS_3                          0                           19
  CLUS_4                          1                            8
  CLUS_5                          2                           35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(17Q12) MUTATED       53      8      2
  AMP PEAK 39(17Q12) WILD-TYPE    112     81    169
D39V4, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                         53                          112
  CLUS_2                          8                           81
  CLUS_3                          2                          169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 39(17Q12) MUTATED        4      5      1      1      0      6
  AMP PEAK 39(17Q12) WILD-TYPE     37     32     38     11     41     18
D39V5, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                          4                           37
  CLUS_2                          5                           32
  CLUS_3                          1                           38
  CLUS_4                          1                           11
  CLUS_5                          0                           41
  CLUS_6                          6                           18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 39(17Q12) MUTATED        8      3      2      4
  AMP PEAK 39(17Q12) WILD-TYPE     59     64     41     13
D39V6, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                          8                           59
  CLUS_2                          3                           64
  CLUS_3                          2                           41
  CLUS_4                          4                           13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(17Q12) MUTATED        2     68      3
  AMP PEAK 39(17Q12) WILD-TYPE    149    162    146
D39V7, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                          2                          149
  CLUS_2                         68                          162
  CLUS_3                          3                          146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(17Q12) MUTATED        7     64      2
  AMP PEAK 39(17Q12) WILD-TYPE    209    105    143
D39V8, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                          7                          209
  CLUS_2                         64                          105
  CLUS_3                          2                          143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(17Q12) MUTATED       66      4      3
  AMP PEAK 39(17Q12) WILD-TYPE    160    139    158
D39V9, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                         66                          160
  CLUS_2                          4                          139
  CLUS_3                          3                          158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 39(17Q12) MUTATED        4      2     53     14
  AMP PEAK 39(17Q12) WILD-TYPE    137     58     70    192
D39V10, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                          4                          137
  CLUS_2                          2                           58
  CLUS_3                         53                           70
  CLUS_4                         14                          192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(17Q12) MUTATED       40     13      7
  AMP PEAK 39(17Q12) WILD-TYPE    132     83    123
D39V11, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                         40                          132
  CLUS_2                         13                           83
  CLUS_3                          7                          123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(17Q12) MUTATED       37      3     20
  AMP PEAK 39(17Q12) WILD-TYPE    107    112    119
D39V12, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                         37                          107
  CLUS_2                          3                          112
  CLUS_3                         20                          119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = AMP PEAK 40(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 40(17Q25.1) MUTATED        0     10      1      0
  AMP PEAK 40(17Q25.1) WILD-TYPE     14      7     11     10
D40V1, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                           10                              7
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 40(17Q25.1) MUTATED        2      8      1      0      0
  AMP PEAK 40(17Q25.1) WILD-TYPE     12      1      6      7     16
D40V2, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            8                              1
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 40(17Q25.1) MUTATED       94      5      1      1      4
  AMP PEAK 40(17Q25.1) WILD-TYPE     75    300     18      8     33
D40V3, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                           94                             75
  CLUS_2                            5                            300
  CLUS_3                            1                             18
  CLUS_4                            1                              8
  CLUS_5                            4                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(17Q25.1) MUTATED       64     15      6
  AMP PEAK 40(17Q25.1) WILD-TYPE    101     74    165
D40V4, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                           64                            101
  CLUS_2                           15                             74
  CLUS_3                            6                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 40(17Q25.1) MUTATED        6      9      2      1      1      7
  AMP PEAK 40(17Q25.1) WILD-TYPE     35     28     37     11     40     17
D40V5, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            9                             28
  CLUS_3                            2                             37
  CLUS_4                            1                             11
  CLUS_5                            1                             40
  CLUS_6                            7                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 40(17Q25.1) MUTATED       12      8      2      4
  AMP PEAK 40(17Q25.1) WILD-TYPE     55     59     41     13
D40V6, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                           12                             55
  CLUS_2                            8                             59
  CLUS_3                            2                             41
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(17Q25.1) MUTATED        5     88      9
  AMP PEAK 40(17Q25.1) WILD-TYPE    146    142    140
D40V7, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                            5                            146
  CLUS_2                           88                            142
  CLUS_3                            9                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(17Q25.1) MUTATED       12     82      8
  AMP PEAK 40(17Q25.1) WILD-TYPE    204     87    137
D40V8, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                           12                            204
  CLUS_2                           82                             87
  CLUS_3                            8                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(17Q25.1) MUTATED       84      9      8
  AMP PEAK 40(17Q25.1) WILD-TYPE    142    134    153
D40V9, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                           84                            142
  CLUS_2                            9                            134
  CLUS_3                            8                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 40(17Q25.1) MUTATED        7      2     63     29
  AMP PEAK 40(17Q25.1) WILD-TYPE    134     58     60    177
D40V10, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                            7                            134
  CLUS_2                            2                             58
  CLUS_3                           63                             60
  CLUS_4                           29                            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(17Q25.1) MUTATED       53     21      7
  AMP PEAK 40(17Q25.1) WILD-TYPE    119     75    123
D40V11, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                           53                            119
  CLUS_2                           21                             75
  CLUS_3                            7                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(17Q25.1) MUTATED       42      9     30
  AMP PEAK 40(17Q25.1) WILD-TYPE    102    106    109
D40V12, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                           42                            102
  CLUS_2                            9                            106
  CLUS_3                           30                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = AMP PEAK 41(18P11.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 41(18P11.31) MUTATED        1      5      1      0
  AMP PEAK 41(18P11.31) WILD-TYPE     13     12     11     10
D41V1, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             5                              12
  CLUS_3                             1                              11
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 41(18P11.31) MUTATED        2      4      0      0      1
  AMP PEAK 41(18P11.31) WILD-TYPE     12      5      7      7     15
D41V2, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             4                               5
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             1                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 41(18P11.31) MUTATED       87      5      3      0      1
  AMP PEAK 41(18P11.31) WILD-TYPE     82    300     16      9     36
D41V3, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                            87                              82
  CLUS_2                             5                             300
  CLUS_3                             3                              16
  CLUS_4                             0                               9
  CLUS_5                             1                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(18P11.31) MUTATED       62     16      7
  AMP PEAK 41(18P11.31) WILD-TYPE    103     73    164
D41V4, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                            62                             103
  CLUS_2                            16                              73
  CLUS_3                             7                             164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 41(18P11.31) MUTATED        7      4      0      0      1      5
  AMP PEAK 41(18P11.31) WILD-TYPE     34     33     39     12     40     19
D41V5, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                             7                              34
  CLUS_2                             4                              33
  CLUS_3                             0                              39
  CLUS_4                             0                              12
  CLUS_5                             1                              40
  CLUS_6                             5                              19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 41(18P11.31) MUTATED       10      4      1      2
  AMP PEAK 41(18P11.31) WILD-TYPE     57     63     42     15
D41V6, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                            10                              57
  CLUS_2                             4                              63
  CLUS_3                             1                              42
  CLUS_4                             2                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(18P11.31) MUTATED        3     84      8
  AMP PEAK 41(18P11.31) WILD-TYPE    148    146    141
D41V7, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                             3                             148
  CLUS_2                            84                             146
  CLUS_3                             8                             141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(18P11.31) MUTATED       10     77      8
  AMP PEAK 41(18P11.31) WILD-TYPE    206     92    137
D41V8, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                            10                             206
  CLUS_2                            77                              92
  CLUS_3                             8                             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(18P11.31) MUTATED       81      7      7
  AMP PEAK 41(18P11.31) WILD-TYPE    145    136    154
D41V9, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                            81                             145
  CLUS_2                             7                             136
  CLUS_3                             7                             154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 41(18P11.31) MUTATED        9      1     64     21
  AMP PEAK 41(18P11.31) WILD-TYPE    132     59     59    185
D41V10, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                             9                             132
  CLUS_2                             1                              59
  CLUS_3                            64                              59
  CLUS_4                            21                             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(18P11.31) MUTATED       52     23      7
  AMP PEAK 41(18P11.31) WILD-TYPE    120     73    123
D41V11, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                            52                             120
  CLUS_2                            23                              73
  CLUS_3                             7                             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(18P11.31) MUTATED       46      6     30
  AMP PEAK 41(18P11.31) WILD-TYPE     98    109    109
D41V12, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                            46                              98
  CLUS_2                             6                             109
  CLUS_3                            30                             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = AMP PEAK 42(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 42(18Q11.2) MUTATED        0      4      1      0
  AMP PEAK 42(18Q11.2) WILD-TYPE     14     13     11     10
D42V1, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            4                             13
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 42(18Q11.2) MUTATED        1      3      0      0      1
  AMP PEAK 42(18Q11.2) WILD-TYPE     13      6      7      7     15
D42V2, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 42(18Q11.2) MUTATED       63      3      2      0      1
  AMP PEAK 42(18Q11.2) WILD-TYPE    106    302     17      9     36
D42V3, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                           63                            106
  CLUS_2                            3                            302
  CLUS_3                            2                             17
  CLUS_4                            0                              9
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(18Q11.2) MUTATED       47     11      3
  AMP PEAK 42(18Q11.2) WILD-TYPE    118     78    168
D42V4, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                           47                            118
  CLUS_2                           11                             78
  CLUS_3                            3                            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 42(18Q11.2) MUTATED        6      3      1      0      1      3
  AMP PEAK 42(18Q11.2) WILD-TYPE     35     34     38     12     40     21
D42V5, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            3                             34
  CLUS_3                            1                             38
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 42(18Q11.2) MUTATED        9      3      0      2
  AMP PEAK 42(18Q11.2) WILD-TYPE     58     64     43     15
D42V6, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            3                             64
  CLUS_3                            0                             43
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(18Q11.2) MUTATED        3     62      3
  AMP PEAK 42(18Q11.2) WILD-TYPE    148    168    146
D42V7, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                            3                            148
  CLUS_2                           62                            168
  CLUS_3                            3                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(18Q11.2) MUTATED        8     57      3
  AMP PEAK 42(18Q11.2) WILD-TYPE    208    112    142
D42V8, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                            8                            208
  CLUS_2                           57                            112
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(18Q11.2) MUTATED       59      7      2
  AMP PEAK 42(18Q11.2) WILD-TYPE    167    136    159
D42V9, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                           59                            167
  CLUS_2                            7                            136
  CLUS_3                            2                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 42(18Q11.2) MUTATED        3      1     44     20
  AMP PEAK 42(18Q11.2) WILD-TYPE    138     59     79    186
D42V10, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                            3                            138
  CLUS_2                            1                             59
  CLUS_3                           44                             79
  CLUS_4                           20                            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(18Q11.2) MUTATED       43     13      1
  AMP PEAK 42(18Q11.2) WILD-TYPE    129     83    129
D42V11, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                           43                            129
  CLUS_2                           13                             83
  CLUS_3                            1                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(18Q11.2) MUTATED       35      1     21
  AMP PEAK 42(18Q11.2) WILD-TYPE    109    114    118
D42V12, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                           35                            109
  CLUS_2                            1                            114
  CLUS_3                           21                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = AMP PEAK 43(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 43(19P13.2) MUTATED        1      7      0      0
  AMP PEAK 43(19P13.2) WILD-TYPE     13     10     12     10
D43V1, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            7                             10
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 43(19P13.2) MUTATED        2      6      0      0      0
  AMP PEAK 43(19P13.2) WILD-TYPE     12      3      7      7     16
D43V2, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            6                              3
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 43(19P13.2) MUTATED       95      0      1      0      3
  AMP PEAK 43(19P13.2) WILD-TYPE     74    305     18      9     34
D43V3, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                           95                             74
  CLUS_2                            0                            305
  CLUS_3                            1                             18
  CLUS_4                            0                              9
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(19P13.2) MUTATED       65     15      7
  AMP PEAK 43(19P13.2) WILD-TYPE    100     74    164
D43V4, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                           65                            100
  CLUS_2                           15                             74
  CLUS_3                            7                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 43(19P13.2) MUTATED        4      9      2      0      1      4
  AMP PEAK 43(19P13.2) WILD-TYPE     37     28     37     12     40     20
D43V5, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            9                             28
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 43(19P13.2) MUTATED       13      3      0      4
  AMP PEAK 43(19P13.2) WILD-TYPE     54     64     43     13
D43V6, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                           13                             54
  CLUS_2                            3                             64
  CLUS_3                            0                             43
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(19P13.2) MUTATED        2     89      6
  AMP PEAK 43(19P13.2) WILD-TYPE    149    141    143
D43V7, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                            2                            149
  CLUS_2                           89                            141
  CLUS_3                            6                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(19P13.2) MUTATED       11     81      5
  AMP PEAK 43(19P13.2) WILD-TYPE    205     88    140
D43V8, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                           11                            205
  CLUS_2                           81                             88
  CLUS_3                            5                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(19P13.2) MUTATED       84      7      6
  AMP PEAK 43(19P13.2) WILD-TYPE    142    136    155
D43V9, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                           84                            142
  CLUS_2                            7                            136
  CLUS_3                            6                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 43(19P13.2) MUTATED        9      1     63     24
  AMP PEAK 43(19P13.2) WILD-TYPE    132     59     60    182
D43V10, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                            9                            132
  CLUS_2                            1                             59
  CLUS_3                           63                             60
  CLUS_4                           24                            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(19P13.2) MUTATED       51     22      8
  AMP PEAK 43(19P13.2) WILD-TYPE    121     74    122
D43V11, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                           51                            121
  CLUS_2                           22                             74
  CLUS_3                            8                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(19P13.2) MUTATED       47      8     26
  AMP PEAK 43(19P13.2) WILD-TYPE     97    107    113
D43V12, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                           47                             97
  CLUS_2                            8                            107
  CLUS_3                           26                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = AMP PEAK 44(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 44(19Q12) MUTATED        1      8      1      0
  AMP PEAK 44(19Q12) WILD-TYPE     13      9     11     10
D44V1, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          8                            9
  CLUS_3                          1                           11
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 44(19Q12) MUTATED        2      7      1      0      0
  AMP PEAK 44(19Q12) WILD-TYPE     12      2      6      7     16
D44V2, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          7                            2
  CLUS_3                          1                            6
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 44(19Q12) MUTATED      113      2      2      0      4
  AMP PEAK 44(19Q12) WILD-TYPE     56    303     17      9     33
D44V3, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                        113                           56
  CLUS_2                          2                          303
  CLUS_3                          2                           17
  CLUS_4                          0                            9
  CLUS_5                          4                           33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(19Q12) MUTATED       80     18      9
  AMP PEAK 44(19Q12) WILD-TYPE     85     71    162
D44V4, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                         80                           85
  CLUS_2                         18                           71
  CLUS_3                          9                          162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 44(19Q12) MUTATED        5      6      1      0      1      7
  AMP PEAK 44(19Q12) WILD-TYPE     36     31     38     12     40     17
D44V5, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                          5                           36
  CLUS_2                          6                           31
  CLUS_3                          1                           38
  CLUS_4                          0                           12
  CLUS_5                          1                           40
  CLUS_6                          7                           17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 44(19Q12) MUTATED       12      4      0      4
  AMP PEAK 44(19Q12) WILD-TYPE     55     63     43     13
D44V6, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                         12                           55
  CLUS_2                          4                           63
  CLUS_3                          0                           43
  CLUS_4                          4                           13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(19Q12) MUTATED        3    109      7
  AMP PEAK 44(19Q12) WILD-TYPE    148    121    142
D44V7, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                          3                          148
  CLUS_2                        109                          121
  CLUS_3                          7                          142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(19Q12) MUTATED       15     98      6
  AMP PEAK 44(19Q12) WILD-TYPE    201     71    139
D44V8, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                         15                          201
  CLUS_2                         98                           71
  CLUS_3                          6                          139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(19Q12) MUTATED      101      8      8
  AMP PEAK 44(19Q12) WILD-TYPE    125    135    153
D44V9, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                        101                          125
  CLUS_2                          8                          135
  CLUS_3                          8                          153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 44(19Q12) MUTATED       10      1     78     28
  AMP PEAK 44(19Q12) WILD-TYPE    131     59     45    178
D44V10, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                         10                          131
  CLUS_2                          1                           59
  CLUS_3                         78                           45
  CLUS_4                         28                          178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(19Q12) MUTATED       66     27      8
  AMP PEAK 44(19Q12) WILD-TYPE    106     69    122
D44V11, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                         66                          106
  CLUS_2                         27                           69
  CLUS_3                          8                          122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(19Q12) MUTATED       56     10     35
  AMP PEAK 44(19Q12) WILD-TYPE     88    105    104
D44V12, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                         56                           88
  CLUS_2                         10                          105
  CLUS_3                         35                          104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = AMP PEAK 45(20P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 45(20P13) MUTATED        1      4      0      0
  AMP PEAK 45(20P13) WILD-TYPE     13     13     12     10
D45V1, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          4                           13
  CLUS_3                          0                           12
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 45(20P13) MUTATED        2      3      0      0      0
  AMP PEAK 45(20P13) WILD-TYPE     12      6      7      7     16
D45V2, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          3                            6
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 45(20P13) MUTATED       87      8     12      2      8
  AMP PEAK 45(20P13) WILD-TYPE     82    297      7      7     29
D45V3, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         87                           82
  CLUS_2                          8                          297
  CLUS_3                         12                            7
  CLUS_4                          2                            7
  CLUS_5                          8                           29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20P13) MUTATED       75     16     16
  AMP PEAK 45(20P13) WILD-TYPE     90     73    155
D45V4, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         75                           90
  CLUS_2                         16                           73
  CLUS_3                         16                          155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 45(20P13) MUTATED        6      7      4      0      2      6
  AMP PEAK 45(20P13) WILD-TYPE     35     30     35     12     39     18
D45V5, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                          6                           35
  CLUS_2                          7                           30
  CLUS_3                          4                           35
  CLUS_4                          0                           12
  CLUS_5                          2                           39
  CLUS_6                          6                           18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 45(20P13) MUTATED       11      6      4      4
  AMP PEAK 45(20P13) WILD-TYPE     56     61     39     13
D45V6, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         11                           56
  CLUS_2                          6                           61
  CLUS_3                          4                           39
  CLUS_4                          4                           13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20P13) MUTATED       11     89     15
  AMP PEAK 45(20P13) WILD-TYPE    140    141    134
D45V7, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         11                          140
  CLUS_2                         89                          141
  CLUS_3                         15                          134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20P13) MUTATED       18     80     17
  AMP PEAK 45(20P13) WILD-TYPE    198     89    128
D45V8, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         18                          198
  CLUS_2                         80                           89
  CLUS_3                         17                          128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20P13) MUTATED       86     15     15
  AMP PEAK 45(20P13) WILD-TYPE    140    128    146
D45V9, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         86                          140
  CLUS_2                         15                          128
  CLUS_3                         15                          146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 45(20P13) MUTATED       13      7     59     37
  AMP PEAK 45(20P13) WILD-TYPE    128     53     64    169
D45V10, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         13                          128
  CLUS_2                          7                           53
  CLUS_3                         59                           64
  CLUS_4                         37                          169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20P13) MUTATED       57     23     18
  AMP PEAK 45(20P13) WILD-TYPE    115     73    112
D45V11, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         57                          115
  CLUS_2                         23                           73
  CLUS_3                         18                          112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20P13) MUTATED       56     13     29
  AMP PEAK 45(20P13) WILD-TYPE     88    102    110
D45V12, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         56                           88
  CLUS_2                         13                          102
  CLUS_3                         29                          110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = AMP PEAK 46(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 46(20Q11.21) MUTATED        2      9      0      0
  AMP PEAK 46(20Q11.21) WILD-TYPE     12      8     12     10
D46V1, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             9                               8
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 46(20Q11.21) MUTATED        4      7      0      0      0
  AMP PEAK 46(20Q11.21) WILD-TYPE     10      2      7      7     16
D46V2, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             7                               2
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 46(20Q11.21) MUTATED      120      8     13      3      8
  AMP PEAK 46(20Q11.21) WILD-TYPE     49    297      6      6     29
D46V3, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                           120                              49
  CLUS_2                             8                             297
  CLUS_3                            13                               6
  CLUS_4                             3                               6
  CLUS_5                             8                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q11.21) MUTATED       89     20     24
  AMP PEAK 46(20Q11.21) WILD-TYPE     76     69    147
D46V4, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                            89                              76
  CLUS_2                            20                              69
  CLUS_3                            24                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 46(20Q11.21) MUTATED        8     12      2      0      2      8
  AMP PEAK 46(20Q11.21) WILD-TYPE     33     25     37     12     39     16
D46V5, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                             8                              33
  CLUS_2                            12                              25
  CLUS_3                             2                              37
  CLUS_4                             0                              12
  CLUS_5                             2                              39
  CLUS_6                             8                              16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 46(20Q11.21) MUTATED       16      8      4      4
  AMP PEAK 46(20Q11.21) WILD-TYPE     51     59     39     13
D46V6, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                            16                              51
  CLUS_2                             8                              59
  CLUS_3                             4                              39
  CLUS_4                             4                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q11.21) MUTATED       11    118     21
  AMP PEAK 46(20Q11.21) WILD-TYPE    140    112    128
D46V7, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                            11                             140
  CLUS_2                           118                             112
  CLUS_3                            21                             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q11.21) MUTATED       26    101     23
  AMP PEAK 46(20Q11.21) WILD-TYPE    190     68    122
D46V8, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                            26                             190
  CLUS_2                           101                              68
  CLUS_3                            23                             122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q11.21) MUTATED      110     17     21
  AMP PEAK 46(20Q11.21) WILD-TYPE    116    126    140
D46V9, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                           110                             116
  CLUS_2                            17                             126
  CLUS_3                            21                             140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 46(20Q11.21) MUTATED       21      7     80     40
  AMP PEAK 46(20Q11.21) WILD-TYPE    120     53     43    166
D46V10, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                            21                             120
  CLUS_2                             7                              53
  CLUS_3                            80                              43
  CLUS_4                            40                             166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q11.21) MUTATED       76     26     23
  AMP PEAK 46(20Q11.21) WILD-TYPE     96     70    107
D46V11, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                            76                              96
  CLUS_2                            26                              70
  CLUS_3                            23                             107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q11.21) MUTATED       69     22     34
  AMP PEAK 46(20Q11.21) WILD-TYPE     75     93    105
D46V12, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                            69                              75
  CLUS_2                            22                              93
  CLUS_3                            34                             105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = AMP PEAK 47(20Q13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 47(20Q13.12) MUTATED        1      6      0      0
  AMP PEAK 47(20Q13.12) WILD-TYPE     13     11     12     10
D47V1, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             6                              11
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 47(20Q13.12) MUTATED        3      4      0      0      0
  AMP PEAK 47(20Q13.12) WILD-TYPE     11      5      7      7     16
D47V2, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                             3                              11
  CLUS_2                             4                               5
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 47(20Q13.12) MUTATED      118     10     14      3      7
  AMP PEAK 47(20Q13.12) WILD-TYPE     51    295      5      6     30
D47V3, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                           118                              51
  CLUS_2                            10                             295
  CLUS_3                            14                               5
  CLUS_4                             3                               6
  CLUS_5                             7                              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(20Q13.12) MUTATED       94     20     24
  AMP PEAK 47(20Q13.12) WILD-TYPE     71     69    147
D47V4, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                            94                              71
  CLUS_2                            20                              69
  CLUS_3                            24                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 47(20Q13.12) MUTATED        6     12      2      1      3      7
  AMP PEAK 47(20Q13.12) WILD-TYPE     35     25     37     11     38     17
D47V5, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                             6                              35
  CLUS_2                            12                              25
  CLUS_3                             2                              37
  CLUS_4                             1                              11
  CLUS_5                             3                              38
  CLUS_6                             7                              17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 47(20Q13.12) MUTATED       14      8      5      4
  AMP PEAK 47(20Q13.12) WILD-TYPE     53     59     38     13
D47V6, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                            14                              53
  CLUS_2                             8                              59
  CLUS_3                             5                              38
  CLUS_4                             4                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(20Q13.12) MUTATED       12    117     20
  AMP PEAK 47(20Q13.12) WILD-TYPE    139    113    129
D47V7, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                            12                             139
  CLUS_2                           117                             113
  CLUS_3                            20                             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(20Q13.12) MUTATED       26    102     21
  AMP PEAK 47(20Q13.12) WILD-TYPE    190     67    124
D47V8, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                            26                             190
  CLUS_2                           102                              67
  CLUS_3                            21                             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(20Q13.12) MUTATED      112     18     21
  AMP PEAK 47(20Q13.12) WILD-TYPE    114    125    140
D47V9, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                           112                             114
  CLUS_2                            18                             125
  CLUS_3                            21                             140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 47(20Q13.12) MUTATED       21      7     79     44
  AMP PEAK 47(20Q13.12) WILD-TYPE    120     53     44    162
D47V10, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                            21                             120
  CLUS_2                             7                              53
  CLUS_3                            79                              44
  CLUS_4                            44                             162
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(20Q13.12) MUTATED       77     28     24
  AMP PEAK 47(20Q13.12) WILD-TYPE     95     68    106
D47V11, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                            77                              95
  CLUS_2                            28                              68
  CLUS_3                            24                             106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(20Q13.12) MUTATED       74     21     34
  AMP PEAK 47(20Q13.12) WILD-TYPE     70     94    105
D47V12, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                            74                              70
  CLUS_2                            21                              94
  CLUS_3                            34                             105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = AMP PEAK 48(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 48(20Q13.33) MUTATED        2      7      0      0
  AMP PEAK 48(20Q13.33) WILD-TYPE     12     10     12     10
D48V1, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             7                              10
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 48(20Q13.33) MUTATED        4      5      0      0      0
  AMP PEAK 48(20Q13.33) WILD-TYPE     10      4      7      7     16
D48V2, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             5                               4
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 48(20Q13.33) MUTATED      117     11     15      3      7
  AMP PEAK 48(20Q13.33) WILD-TYPE     52    294      4      6     30
D48V3, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                           117                              52
  CLUS_2                            11                             294
  CLUS_3                            15                               4
  CLUS_4                             3                               6
  CLUS_5                             7                              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(20Q13.33) MUTATED       91     21     24
  AMP PEAK 48(20Q13.33) WILD-TYPE     74     68    147
D48V4, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                            91                              74
  CLUS_2                            21                              68
  CLUS_3                            24                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 48(20Q13.33) MUTATED        6     11      4      1      3      7
  AMP PEAK 48(20Q13.33) WILD-TYPE     35     26     35     11     38     17
D48V5, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                             6                              35
  CLUS_2                            11                              26
  CLUS_3                             4                              35
  CLUS_4                             1                              11
  CLUS_5                             3                              38
  CLUS_6                             7                              17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 48(20Q13.33) MUTATED       13      9      6      4
  AMP PEAK 48(20Q13.33) WILD-TYPE     54     58     37     13
D48V6, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                            13                              54
  CLUS_2                             9                              58
  CLUS_3                             6                              37
  CLUS_4                             4                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(20Q13.33) MUTATED       14    116     21
  AMP PEAK 48(20Q13.33) WILD-TYPE    137    114    128
D48V7, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                            14                             137
  CLUS_2                           116                             114
  CLUS_3                            21                             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(20Q13.33) MUTATED       29    100     22
  AMP PEAK 48(20Q13.33) WILD-TYPE    187     69    123
D48V8, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                            29                             187
  CLUS_2                           100                              69
  CLUS_3                            22                             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(20Q13.33) MUTATED      110     18     22
  AMP PEAK 48(20Q13.33) WILD-TYPE    116    125    139
D48V9, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                           110                             116
  CLUS_2                            18                             125
  CLUS_3                            22                             139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 48(20Q13.33) MUTATED       21      8     77     44
  AMP PEAK 48(20Q13.33) WILD-TYPE    120     52     46    162
D48V10, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                            21                             120
  CLUS_2                             8                              52
  CLUS_3                            77                              46
  CLUS_4                            44                             162
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(20Q13.33) MUTATED       76     28     23
  AMP PEAK 48(20Q13.33) WILD-TYPE     96     68    107
D48V11, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                            76                              96
  CLUS_2                            28                              68
  CLUS_3                            23                             107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(20Q13.33) MUTATED       71     21     35
  AMP PEAK 48(20Q13.33) WILD-TYPE     73     94    104
D48V12, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                            71                              73
  CLUS_2                            21                              94
  CLUS_3                            35                             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = AMP PEAK 49(22Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 49(22Q12.2) MUTATED        1      3      0      0
  AMP PEAK 49(22Q12.2) WILD-TYPE     13     14     12     10
D49V1, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 49(22Q12.2) MUTATED        2      2      0      0      0
  AMP PEAK 49(22Q12.2) WILD-TYPE     12      7      7      7     16
D49V2, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 49(22Q12.2) MUTATED       56      4      1      1      0
  AMP PEAK 49(22Q12.2) WILD-TYPE    113    301     18      8     37
D49V3, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                           56                            113
  CLUS_2                            4                            301
  CLUS_3                            1                             18
  CLUS_4                            1                              8
  CLUS_5                            0                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(22Q12.2) MUTATED       49      8      0
  AMP PEAK 49(22Q12.2) WILD-TYPE    116     81    171
D49V4, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                           49                            116
  CLUS_2                            8                             81
  CLUS_3                            0                            171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 49(22Q12.2) MUTATED        3      3      0      0      0      2
  AMP PEAK 49(22Q12.2) WILD-TYPE     38     34     39     12     41     22
D49V5, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            3                             34
  CLUS_3                            0                             39
  CLUS_4                            0                             12
  CLUS_5                            0                             41
  CLUS_6                            2                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 49(22Q12.2) MUTATED        6      0      0      2
  AMP PEAK 49(22Q12.2) WILD-TYPE     61     67     43     15
D49V6, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                            6                             61
  CLUS_2                            0                             67
  CLUS_3                            0                             43
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(22Q12.2) MUTATED        1     60      0
  AMP PEAK 49(22Q12.2) WILD-TYPE    150    170    149
D49V7, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                            1                            150
  CLUS_2                           60                            170
  CLUS_3                            0                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(22Q12.2) MUTATED        3     58      0
  AMP PEAK 49(22Q12.2) WILD-TYPE    213    111    145
D49V8, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                            3                            213
  CLUS_2                           58                            111
  CLUS_3                            0                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(22Q12.2) MUTATED       60      1      0
  AMP PEAK 49(22Q12.2) WILD-TYPE    166    142    161
D49V9, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                           60                            166
  CLUS_2                            1                            142
  CLUS_3                            0                            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 49(22Q12.2) MUTATED        1      1     46     13
  AMP PEAK 49(22Q12.2) WILD-TYPE    140     59     77    193
D49V10, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                            1                            140
  CLUS_2                            1                             59
  CLUS_3                           46                             77
  CLUS_4                           13                            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(22Q12.2) MUTATED       43     10      3
  AMP PEAK 49(22Q12.2) WILD-TYPE    129     86    127
D49V11, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                           43                            129
  CLUS_2                           10                             86
  CLUS_3                            3                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(22Q12.2) MUTATED       40      1     15
  AMP PEAK 49(22Q12.2) WILD-TYPE    104    114    124
D49V12, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                           40                            104
  CLUS_2                            1                            114
  CLUS_3                           15                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = AMP PEAK 50(XP11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 50(XP11.23) MUTATED        1      4      2      0
  AMP PEAK 50(XP11.23) WILD-TYPE     13     13     10     10
D50V1, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                             13
  CLUS_3                            2                             10
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 50(XP11.23) MUTATED        2      2      1      1      1
  AMP PEAK 50(XP11.23) WILD-TYPE     12      7      6      6     15
D50V2, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            1                              6
  CLUS_4                            1                              6
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 50(XP11.23) MUTATED       48      8      8      3     23
  AMP PEAK 50(XP11.23) WILD-TYPE    121    297     11      6     14
D50V3, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                           48                            121
  CLUS_2                            8                            297
  CLUS_3                            8                             11
  CLUS_4                            3                              6
  CLUS_5                           23                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(XP11.23) MUTATED       43     11     17
  AMP PEAK 50(XP11.23) WILD-TYPE    122     78    154
D50V4, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                           43                            122
  CLUS_2                           11                             78
  CLUS_3                           17                            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 50(XP11.23) MUTATED        6      7      6      2      3      4
  AMP PEAK 50(XP11.23) WILD-TYPE     35     30     33     10     38     20
D50V5, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            7                             30
  CLUS_3                            6                             33
  CLUS_4                            2                             10
  CLUS_5                            3                             38
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 50(XP11.23) MUTATED        8     10      7      3
  AMP PEAK 50(XP11.23) WILD-TYPE     59     57     36     14
D50V6, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                           10                             57
  CLUS_3                            7                             36
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(XP11.23) MUTATED       15     56     17
  AMP PEAK 50(XP11.23) WILD-TYPE    136    174    132
D50V7, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                           15                            136
  CLUS_2                           56                            174
  CLUS_3                           17                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(XP11.23) MUTATED       23     48     17
  AMP PEAK 50(XP11.23) WILD-TYPE    193    121    128
D50V8, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                           23                            193
  CLUS_2                           48                            121
  CLUS_3                           17                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(XP11.23) MUTATED       54     19     16
  AMP PEAK 50(XP11.23) WILD-TYPE    172    124    145
D50V9, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                           54                            172
  CLUS_2                           19                            124
  CLUS_3                           16                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 50(XP11.23) MUTATED       16      6     36     31
  AMP PEAK 50(XP11.23) WILD-TYPE    125     54     87    175
D50V10, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                           16                            125
  CLUS_2                            6                             54
  CLUS_3                           36                             87
  CLUS_4                           31                            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(XP11.23) MUTATED       40     15     13
  AMP PEAK 50(XP11.23) WILD-TYPE    132     81    117
D50V11, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                           40                            132
  CLUS_2                           15                             81
  CLUS_3                           13                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(XP11.23) MUTATED       32     10     26
  AMP PEAK 50(XP11.23) WILD-TYPE    112    105    113
D50V12, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                           32                            112
  CLUS_2                           10                            105
  CLUS_3                           26                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = AMP PEAK 51(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 51(XQ28) MUTATED        1      6      2      0
  AMP PEAK 51(XQ28) WILD-TYPE     13     11     10     10
D51V1, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         6                          11
  CLUS_3                         2                          10
  CLUS_4                         0                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 51(XQ28) MUTATED        1      5      1      1      1
  AMP PEAK 51(XQ28) WILD-TYPE     13      4      6      6     15
D51V2, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         5                           4
  CLUS_3                         1                           6
  CLUS_4                         1                           6
  CLUS_5                         1                          15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 51(XQ28) MUTATED       49     10      8      3     23
  AMP PEAK 51(XQ28) WILD-TYPE    120    295     11      6     14
D51V3, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        49                         120
  CLUS_2                        10                         295
  CLUS_3                         8                          11
  CLUS_4                         3                           6
  CLUS_5                        23                          14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 51(XQ28) MUTATED       37     14     20
  AMP PEAK 51(XQ28) WILD-TYPE    128     75    151
D51V4, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        37                         128
  CLUS_2                        14                          75
  CLUS_3                        20                         151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 51(XQ28) MUTATED        4      9      4      2      3      5
  AMP PEAK 51(XQ28) WILD-TYPE     37     28     35     10     38     19
D51V5, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                         4                          37
  CLUS_2                         9                          28
  CLUS_3                         4                          35
  CLUS_4                         2                          10
  CLUS_5                         3                          38
  CLUS_6                         5                          19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 51(XQ28) MUTATED       10      7      7      3
  AMP PEAK 51(XQ28) WILD-TYPE     57     60     36     14
D51V6, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        10                          57
  CLUS_2                         7                          60
  CLUS_3                         7                          36
  CLUS_4                         3                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 51(XQ28) MUTATED       17     56     18
  AMP PEAK 51(XQ28) WILD-TYPE    134    174    131
D51V7, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        17                         134
  CLUS_2                        56                         174
  CLUS_3                        18                         131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 51(XQ28) MUTATED       27     47     17
  AMP PEAK 51(XQ28) WILD-TYPE    189    122    128
D51V8, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        27                         189
  CLUS_2                        47                         122
  CLUS_3                        17                         128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 51(XQ28) MUTATED       52     22     16
  AMP PEAK 51(XQ28) WILD-TYPE    174    121    145
D51V9, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        52                         174
  CLUS_2                        22                         121
  CLUS_3                        16                         145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 51(XQ28) MUTATED       17      7     35     31
  AMP PEAK 51(XQ28) WILD-TYPE    124     53     88    175
D51V10, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        17                         124
  CLUS_2                         7                          53
  CLUS_3                        35                          88
  CLUS_4                        31                         175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 51(XQ28) MUTATED       40     16     14
  AMP PEAK 51(XQ28) WILD-TYPE    132     80    116
D51V11, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        40                         132
  CLUS_2                        16                          80
  CLUS_3                        14                         116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 51(XQ28) MUTATED       30     14     26
  AMP PEAK 51(XQ28) WILD-TYPE    114    101    113
D51V12, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        30                         114
  CLUS_2                        14                         101
  CLUS_3                        26                         113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK  1(1P36.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        2      6      0      0
  DEL PEAK  1(1P36.21) WILD-TYPE     12     11     12     10
D52V1, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.21) MUTATED        3      5      0      0      0
  DEL PEAK  1(1P36.21) WILD-TYPE     11      4      7      7     16
D52V2, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            5                              4
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.21) MUTATED       60      3      3      5      0
  DEL PEAK  1(1P36.21) WILD-TYPE    109    302     16      4     37
D52V3, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           60                            109
  CLUS_2                            3                            302
  CLUS_3                            3                             16
  CLUS_4                            5                              4
  CLUS_5                            0                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       39     15      6
  DEL PEAK  1(1P36.21) WILD-TYPE    126     74    165
D52V4, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           39                            126
  CLUS_2                           15                             74
  CLUS_3                            6                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.21) MUTATED        3      8      0      0      1      3
  DEL PEAK  1(1P36.21) WILD-TYPE     38     29     39     12     40     21
D52V5, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            8                             29
  CLUS_3                            0                             39
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        8      3      2      2
  DEL PEAK  1(1P36.21) WILD-TYPE     59     64     41     15
D52V6, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                            3                             64
  CLUS_3                            2                             41
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED        6     60      4
  DEL PEAK  1(1P36.21) WILD-TYPE    145    170    145
D52V7, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            6                            145
  CLUS_2                           60                            170
  CLUS_3                            4                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       17     50      3
  DEL PEAK  1(1P36.21) WILD-TYPE    199    119    142
D52V8, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           17                            199
  CLUS_2                           50                            119
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       54      8      6
  DEL PEAK  1(1P36.21) WILD-TYPE    172    135    155
D52V9, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           54                            172
  CLUS_2                            8                            135
  CLUS_3                            6                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        3      0     40     25
  DEL PEAK  1(1P36.21) WILD-TYPE    138     60     83    181
D52V10, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            3                            138
  CLUS_2                            0                             60
  CLUS_3                           40                             83
  CLUS_4                           25                            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       24     25     11
  DEL PEAK  1(1P36.21) WILD-TYPE    148     71    119
D52V11, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           24                            148
  CLUS_2                           25                             71
  CLUS_3                           11                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       27      5     28
  DEL PEAK  1(1P36.21) WILD-TYPE    117    110    111
D52V12, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           27                            117
  CLUS_2                            5                            110
  CLUS_3                           28                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK  2(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED        1      5      0      0
  DEL PEAK  2(1P36.11) WILD-TYPE     13     12     12     10
D53V1, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            5                             12
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.11) MUTATED        2      4      0      0      0
  DEL PEAK  2(1P36.11) WILD-TYPE     12      5      7      7     16
D53V2, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.11) MUTATED       72      2      4      5      0
  DEL PEAK  2(1P36.11) WILD-TYPE     97    303     15      4     37
D53V3, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           72                             97
  CLUS_2                            2                            303
  CLUS_3                            4                             15
  CLUS_4                            5                              4
  CLUS_5                            0                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       56     12      6
  DEL PEAK  2(1P36.11) WILD-TYPE    109     77    165
D53V4, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           56                            109
  CLUS_2                           12                             77
  CLUS_3                            6                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P36.11) MUTATED        3      7      0      1      1      2
  DEL PEAK  2(1P36.11) WILD-TYPE     38     30     39     11     40     22
D53V5, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            7                             30
  CLUS_3                            0                             39
  CLUS_4                            1                             11
  CLUS_5                            1                             40
  CLUS_6                            2                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED        7      3      3      1
  DEL PEAK  2(1P36.11) WILD-TYPE     60     64     40     16
D53V6, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            7                             60
  CLUS_2                            3                             64
  CLUS_3                            3                             40
  CLUS_4                            1                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED        6     72      4
  DEL PEAK  2(1P36.11) WILD-TYPE    145    158    145
D53V7, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            6                            145
  CLUS_2                           72                            158
  CLUS_3                            4                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       19     60      3
  DEL PEAK  2(1P36.11) WILD-TYPE    197    109    142
D53V8, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           19                            197
  CLUS_2                           60                            109
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       66      7      7
  DEL PEAK  2(1P36.11) WILD-TYPE    160    136    154
D53V9, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           66                            160
  CLUS_2                            7                            136
  CLUS_3                            7                            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED        3      0     47     30
  DEL PEAK  2(1P36.11) WILD-TYPE    138     60     76    176
D53V10, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            3                            138
  CLUS_2                            0                             60
  CLUS_3                           47                             76
  CLUS_4                           30                            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       40     22     11
  DEL PEAK  2(1P36.11) WILD-TYPE    132     74    119
D53V11, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           40                            132
  CLUS_2                           22                             74
  CLUS_3                           11                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       42      6     25
  DEL PEAK  2(1P36.11) WILD-TYPE    102    109    114
D53V12, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           42                            102
  CLUS_2                            6                            109
  CLUS_3                           25                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK  3(2P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        0      1      0      0
  DEL PEAK  3(2P25.3) WILD-TYPE     14     16     12     10
D54V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  3(2P25.3) MUTATED"
clus
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05A                    TCGA-AP-A05D 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05H                    TCGA-AP-A05J 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05N                    TCGA-AP-A05P 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0L8                    TCGA-AP-A0LD 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.3) MUTATED        0      1      0      0      0
  DEL PEAK  3(2P25.3) WILD-TYPE     14      8      7      7     16
D54V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  3(2P25.3) MUTATED"
clus
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05A                    TCGA-AP-A05D 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05H                    TCGA-AP-A05J 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05N                    TCGA-AP-A05P 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0L8                    TCGA-AP-A0LD 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.3) MUTATED       24      2      0      0      0
  DEL PEAK  3(2P25.3) WILD-TYPE    145    303     19      9     37
D54V3, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          24                           145
  CLUS_2                           2                           303
  CLUS_3                           0                            19
  CLUS_4                           0                             9
  CLUS_5                           0                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       19      4      2
  DEL PEAK  3(2P25.3) WILD-TYPE    146     85    169
D54V4, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          19                           146
  CLUS_2                           4                            85
  CLUS_3                           2                           169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED        2      0      1      0      0      2
  DEL PEAK  3(2P25.3) WILD-TYPE     39     37     38     12     41     22
D54V5, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           0                            37
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        2      1      0      2
  DEL PEAK  3(2P25.3) WILD-TYPE     65     66     43     15
D54V6, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           2                            65
  CLUS_2                           1                            66
  CLUS_3                           0                            43
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED        1     22      3
  DEL PEAK  3(2P25.3) WILD-TYPE    150    208    146
D54V7, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           1                           150
  CLUS_2                          22                           208
  CLUS_3                           3                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED        4     19      3
  DEL PEAK  3(2P25.3) WILD-TYPE    212    150    142
D54V8, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           4                           212
  CLUS_2                          19                           150
  CLUS_3                           3                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       21      2      3
  DEL PEAK  3(2P25.3) WILD-TYPE    205    141    158
D54V9, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          21                           205
  CLUS_2                           2                           141
  CLUS_3                           3                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        3      1     14      8
  DEL PEAK  3(2P25.3) WILD-TYPE    138     59    109    198
D54V10, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           3                           138
  CLUS_2                           1                            59
  CLUS_3                          14                           109
  CLUS_4                           8                           198
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       14      5      4
  DEL PEAK  3(2P25.3) WILD-TYPE    158     91    126
D54V11, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          14                           158
  CLUS_2                           5                            91
  CLUS_3                           4                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       13      4      6
  DEL PEAK  3(2P25.3) WILD-TYPE    131    111    133
D54V12, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          13                           131
  CLUS_2                           4                           111
  CLUS_3                           6                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK  4(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED        0      4      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE     14     13     12     10
D55V1, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           4                            13
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q22.1) MUTATED        0      4      0      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE     14      5      7      7     16
D55V2, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q22.1) MUTATED       46      0      2      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE    123    305     17      9     37
D55V3, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          46                           123
  CLUS_2                           0                           305
  CLUS_3                           2                            17
  CLUS_4                           0                             9
  CLUS_5                           0                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       30      8      4
  DEL PEAK  4(2Q22.1) WILD-TYPE    135     81    167
D55V4, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          30                           135
  CLUS_2                           8                            81
  CLUS_3                           4                           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED        2      3      0      0      0      3
  DEL PEAK  4(2Q22.1) WILD-TYPE     39     34     39     12     41     21
D55V5, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           3                            34
  CLUS_3                           0                            39
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED        4      1      0      3
  DEL PEAK  4(2Q22.1) WILD-TYPE     63     66     43     14
D55V6, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           4                            63
  CLUS_2                           1                            66
  CLUS_3                           0                            43
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED        0     43      5
  DEL PEAK  4(2Q22.1) WILD-TYPE    151    187    144
D55V7, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                           151
  CLUS_2                          43                           187
  CLUS_3                           5                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED        8     34      6
  DEL PEAK  4(2Q22.1) WILD-TYPE    208    135    139
D55V8, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           8                           208
  CLUS_2                          34                           135
  CLUS_3                           6                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       37      5      4
  DEL PEAK  4(2Q22.1) WILD-TYPE    189    138    157
D55V9, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          37                           189
  CLUS_2                           5                           138
  CLUS_3                           4                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED        5      1     22     18
  DEL PEAK  4(2Q22.1) WILD-TYPE    136     59    101    188
D55V10, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           5                           136
  CLUS_2                           1                            59
  CLUS_3                          22                           101
  CLUS_4                          18                           188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       29      5      7
  DEL PEAK  4(2Q22.1) WILD-TYPE    143     91    123
D55V11, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          29                           143
  CLUS_2                           5                            91
  CLUS_3                           7                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       26      7      8
  DEL PEAK  4(2Q22.1) WILD-TYPE    118    108    131
D55V12, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          26                           118
  CLUS_2                           7                           108
  CLUS_3                           8                           131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK  5(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED        0      1      0      0
  DEL PEAK  5(2Q37.3) WILD-TYPE     14     16     12     10
D56V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  5(2Q37.3) MUTATED"
clus
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05D                    TCGA-AP-A05H 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05J                    TCGA-AP-A05N 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05P                    TCGA-AP-A0L8 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0L9                    TCGA-AP-A0LD 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED        0      1      0      0      0
  DEL PEAK  5(2Q37.3) WILD-TYPE     14      8      7      7     16
D56V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  5(2Q37.3) MUTATED"
clus
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05D                    TCGA-AP-A05H 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05J                    TCGA-AP-A05N 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05P                    TCGA-AP-A0L8 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0L9                    TCGA-AP-A0LD 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED       49      1      2      0      1
  DEL PEAK  5(2Q37.3) WILD-TYPE    120    304     17      9     36
D56V3, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          49                           120
  CLUS_2                           1                           304
  CLUS_3                           2                            17
  CLUS_4                           0                             9
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       35      6      8
  DEL PEAK  5(2Q37.3) WILD-TYPE    130     83    163
D56V4, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          35                           130
  CLUS_2                           6                            83
  CLUS_3                           8                           163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED        4      3      0      0      1      2
  DEL PEAK  5(2Q37.3) WILD-TYPE     37     34     39     12     40     22
D56V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           3                            34
  CLUS_3                           0                            39
  CLUS_4                           0                            12
  CLUS_5                           1                            40
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED        4      4      1      1
  DEL PEAK  5(2Q37.3) WILD-TYPE     63     63     42     16
D56V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           4                            63
  CLUS_2                           4                            63
  CLUS_3                           1                            42
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED        3     42      7
  DEL PEAK  5(2Q37.3) WILD-TYPE    148    188    142
D56V7, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           3                           148
  CLUS_2                          42                           188
  CLUS_3                           7                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       13     32      7
  DEL PEAK  5(2Q37.3) WILD-TYPE    203    137    138
D56V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          13                           203
  CLUS_2                          32                           137
  CLUS_3                           7                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       39      5      8
  DEL PEAK  5(2Q37.3) WILD-TYPE    187    138    153
D56V9, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          39                           187
  CLUS_2                           5                           138
  CLUS_3                           8                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED        8      2     20     22
  DEL PEAK  5(2Q37.3) WILD-TYPE    133     58    103    184
D56V10, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           8                           133
  CLUS_2                           2                            58
  CLUS_3                          20                           103
  CLUS_4                          22                           184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       26     10     11
  DEL PEAK  5(2Q37.3) WILD-TYPE    146     86    119
D56V11, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          26                           146
  CLUS_2                          10                            86
  CLUS_3                          11                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       23      9     15
  DEL PEAK  5(2Q37.3) WILD-TYPE    121    106    124
D56V12, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          23                           121
  CLUS_2                           9                           106
  CLUS_3                          15                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK  6(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED        1      5      0      0
  DEL PEAK  6(3P14.2) WILD-TYPE     13     12     12     10
D57V1, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P14.2) MUTATED        2      4      0      0      0
  DEL PEAK  6(3P14.2) WILD-TYPE     12      5      7      7     16
D57V2, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P14.2) MUTATED       72      0      4      2      1
  DEL PEAK  6(3P14.2) WILD-TYPE     97    305     15      7     36
D57V3, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          72                            97
  CLUS_2                           0                           305
  CLUS_3                           4                            15
  CLUS_4                           2                             7
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       51     12      5
  DEL PEAK  6(3P14.2) WILD-TYPE    114     77    166
D57V4, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          51                           114
  CLUS_2                          12                            77
  CLUS_3                           5                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P14.2) MUTATED        3     10      1      0      1      2
  DEL PEAK  6(3P14.2) WILD-TYPE     38     27     38     12     40     22
D57V5, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           3                            38
  CLUS_2                          10                            27
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           1                            40
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED       11      3      2      1
  DEL PEAK  6(3P14.2) WILD-TYPE     56     64     41     16
D57V6, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          11                            56
  CLUS_2                           3                            64
  CLUS_3                           2                            41
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED        1     71      4
  DEL PEAK  6(3P14.2) WILD-TYPE    150    159    145
D57V7, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           1                           150
  CLUS_2                          71                           159
  CLUS_3                           4                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       13     58      5
  DEL PEAK  6(3P14.2) WILD-TYPE    203    111    140
D57V8, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          13                           203
  CLUS_2                          58                           111
  CLUS_3                           5                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       64      9      4
  DEL PEAK  6(3P14.2) WILD-TYPE    162    134    157
D57V9, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          64                           162
  CLUS_2                           9                           134
  CLUS_3                           4                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED        6      2     43     26
  DEL PEAK  6(3P14.2) WILD-TYPE    135     58     80    180
D57V10, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           6                           135
  CLUS_2                           2                            58
  CLUS_3                          43                            80
  CLUS_4                          26                           180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       41     16      9
  DEL PEAK  6(3P14.2) WILD-TYPE    131     80    121
D57V11, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          41                           131
  CLUS_2                          16                            80
  CLUS_3                           9                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       42      4     20
  DEL PEAK  6(3P14.2) WILD-TYPE    102    111    119
D57V12, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          42                           102
  CLUS_2                           4                           111
  CLUS_3                          20                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK  7(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED        1      3      1      0
  DEL PEAK  7(3Q13.31) WILD-TYPE     13     14     11     10
D58V1, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q13.31) MUTATED        1      3      0      0      1
  DEL PEAK  7(3Q13.31) WILD-TYPE     13      6      7      7     15
D58V2, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q13.31) MUTATED       36      4      0      2      1
  DEL PEAK  7(3Q13.31) WILD-TYPE    133    301     19      7     36
D58V3, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           36                            133
  CLUS_2                            4                            301
  CLUS_3                            0                             19
  CLUS_4                            2                              7
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       24      7      5
  DEL PEAK  7(3Q13.31) WILD-TYPE    141     82    166
D58V4, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           24                            141
  CLUS_2                            7                             82
  CLUS_3                            5                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED        0      3      3      0      1      3
  DEL PEAK  7(3Q13.31) WILD-TYPE     41     34     36     12     40     21
D58V5, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            0                             41
  CLUS_2                            3                             34
  CLUS_3                            3                             36
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED        3      3      1      3
  DEL PEAK  7(3Q13.31) WILD-TYPE     64     64     42     14
D58V6, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            3                             64
  CLUS_2                            3                             64
  CLUS_3                            1                             42
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED        2     35      6
  DEL PEAK  7(3Q13.31) WILD-TYPE    149    195    143
D58V7, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            2                            149
  CLUS_2                           35                            195
  CLUS_3                            6                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED        5     32      6
  DEL PEAK  7(3Q13.31) WILD-TYPE    211    137    139
D58V8, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            5                            211
  CLUS_2                           32                            137
  CLUS_3                            6                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       32      4      5
  DEL PEAK  7(3Q13.31) WILD-TYPE    194    139    156
D58V9, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           32                            194
  CLUS_2                            4                            139
  CLUS_3                            5                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED        5      2     21     13
  DEL PEAK  7(3Q13.31) WILD-TYPE    136     58    102    193
D58V10, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            5                            136
  CLUS_2                            2                             58
  CLUS_3                           21                            102
  CLUS_4                           13                            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       19     11      4
  DEL PEAK  7(3Q13.31) WILD-TYPE    153     85    126
D58V11, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           19                            153
  CLUS_2                           11                             85
  CLUS_3                            4                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       15      6     13
  DEL PEAK  7(3Q13.31) WILD-TYPE    129    109    126
D58V12, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           15                            129
  CLUS_2                            6                            109
  CLUS_3                           13                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK  8(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED        1      6      0      0
  DEL PEAK  8(4P16.3) WILD-TYPE     13     11     12     10
D59V1, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4P16.3) MUTATED        2      5      0      0      0
  DEL PEAK  8(4P16.3) WILD-TYPE     12      4      7      7     16
D59V2, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4P16.3) MUTATED       79      4      5      4      2
  DEL PEAK  8(4P16.3) WILD-TYPE     90    301     14      5     35
D59V3, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          79                            90
  CLUS_2                           4                           301
  CLUS_3                           5                            14
  CLUS_4                           4                             5
  CLUS_5                           2                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       62     13      7
  DEL PEAK  8(4P16.3) WILD-TYPE    103     76    164
D59V4, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          62                           103
  CLUS_2                          13                            76
  CLUS_3                           7                           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4P16.3) MUTATED        5      9      0      1      2      5
  DEL PEAK  8(4P16.3) WILD-TYPE     36     28     39     11     39     19
D59V5, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           9                            28
  CLUS_3                           0                            39
  CLUS_4                           1                            11
  CLUS_5                           2                            39
  CLUS_6                           5                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED       10      5      4      3
  DEL PEAK  8(4P16.3) WILD-TYPE     57     62     39     14
D59V6, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          10                            57
  CLUS_2                           5                            62
  CLUS_3                           4                            39
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED        6     78      9
  DEL PEAK  8(4P16.3) WILD-TYPE    145    152    140
D59V7, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           6                           145
  CLUS_2                          78                           152
  CLUS_3                           9                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       18     68      7
  DEL PEAK  8(4P16.3) WILD-TYPE    198    101    138
D59V8, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          18                           198
  CLUS_2                          68                           101
  CLUS_3                           7                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       73      9      9
  DEL PEAK  8(4P16.3) WILD-TYPE    153    134    152
D59V9, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          73                           153
  CLUS_2                           9                           134
  CLUS_3                           9                           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED        6      1     55     29
  DEL PEAK  8(4P16.3) WILD-TYPE    135     59     68    177
D59V10, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           6                           135
  CLUS_2                           1                            59
  CLUS_3                          55                            68
  CLUS_4                          29                           177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       46     24     10
  DEL PEAK  8(4P16.3) WILD-TYPE    126     72    120
D59V11, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          46                           126
  CLUS_2                          24                            72
  CLUS_3                          10                           120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       45      8     27
  DEL PEAK  8(4P16.3) WILD-TYPE     99    107    112
D59V12, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          45                            99
  CLUS_2                           8                           107
  CLUS_3                          27                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK  9(4P15.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P15.2) MUTATED        1      6      0      0
  DEL PEAK  9(4P15.2) WILD-TYPE     13     11     12     10
D60V1, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4P15.2) MUTATED        3      4      0      0      0
  DEL PEAK  9(4P15.2) WILD-TYPE     11      5      7      7     16
D60V2, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4P15.2) MUTATED       84      3      5      4      2
  DEL PEAK  9(4P15.2) WILD-TYPE     85    302     14      5     35
D60V3, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                          84                            85
  CLUS_2                           3                           302
  CLUS_3                           5                            14
  CLUS_4                           4                             5
  CLUS_5                           2                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.2) MUTATED       67     14      6
  DEL PEAK  9(4P15.2) WILD-TYPE     98     75    165
D60V4, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                          67                            98
  CLUS_2                          14                            75
  CLUS_3                           6                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4P15.2) MUTATED        5      8      0      1      2      5
  DEL PEAK  9(4P15.2) WILD-TYPE     36     29     39     11     39     19
D60V5, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           8                            29
  CLUS_3                           0                            39
  CLUS_4                           1                            11
  CLUS_5                           2                            39
  CLUS_6                           5                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P15.2) MUTATED        9      5      4      3
  DEL PEAK  9(4P15.2) WILD-TYPE     58     62     39     14
D60V6, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                           5                            62
  CLUS_3                           4                            39
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.2) MUTATED        6     83      8
  DEL PEAK  9(4P15.2) WILD-TYPE    145    147    141
D60V7, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                           6                           145
  CLUS_2                          83                           147
  CLUS_3                           8                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.2) MUTATED       20     70      7
  DEL PEAK  9(4P15.2) WILD-TYPE    196     99    138
D60V8, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                          20                           196
  CLUS_2                          70                            99
  CLUS_3                           7                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.2) MUTATED       78     10      8
  DEL PEAK  9(4P15.2) WILD-TYPE    148    133    153
D60V9, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                          78                           148
  CLUS_2                          10                           133
  CLUS_3                           8                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P15.2) MUTATED        5      1     58     32
  DEL PEAK  9(4P15.2) WILD-TYPE    136     59     65    174
D60V10, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                           5                           136
  CLUS_2                           1                            59
  CLUS_3                          58                            65
  CLUS_4                          32                           174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.2) MUTATED       52     24     10
  DEL PEAK  9(4P15.2) WILD-TYPE    120     72    120
D60V11, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                          52                           120
  CLUS_2                          24                            72
  CLUS_3                          10                           120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.2) MUTATED       49      7     30
  DEL PEAK  9(4P15.2) WILD-TYPE     95    108    109
D60V12, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                          49                            95
  CLUS_2                           7                           108
  CLUS_3                          30                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 10(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED        1      7      0      0
  DEL PEAK 10(4Q22.1) WILD-TYPE     13     10     12     10
D61V1, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           7                            10
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q22.1) MUTATED        2      6      0      0      0
  DEL PEAK 10(4Q22.1) WILD-TYPE     12      3      7      7     16
D61V2, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           6                             3
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q22.1) MUTATED       94      2      4      4      2
  DEL PEAK 10(4Q22.1) WILD-TYPE     75    303     15      5     35
D61V3, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          94                            75
  CLUS_2                           2                           303
  CLUS_3                           4                            15
  CLUS_4                           4                             5
  CLUS_5                           2                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       71     16      5
  DEL PEAK 10(4Q22.1) WILD-TYPE     94     73    166
D61V4, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          71                            94
  CLUS_2                          16                            73
  CLUS_3                           5                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q22.1) MUTATED        6      8      1      1      1      5
  DEL PEAK 10(4Q22.1) WILD-TYPE     35     29     38     11     40     19
D61V5, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           8                            29
  CLUS_3                           1                            38
  CLUS_4                           1                            11
  CLUS_5                           1                            40
  CLUS_6                           5                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED       11      5      3      3
  DEL PEAK 10(4Q22.1) WILD-TYPE     56     62     40     14
D61V6, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          11                            56
  CLUS_2                           5                            62
  CLUS_3                           3                            40
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED        5     93      7
  DEL PEAK 10(4Q22.1) WILD-TYPE    146    137    142
D61V7, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           5                           146
  CLUS_2                          93                           137
  CLUS_3                           7                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       20     79      6
  DEL PEAK 10(4Q22.1) WILD-TYPE    196     90    139
D61V8, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          20                           196
  CLUS_2                          79                            90
  CLUS_3                           6                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       88      8      7
  DEL PEAK 10(4Q22.1) WILD-TYPE    138    135    154
D61V9, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          88                           138
  CLUS_2                           8                           135
  CLUS_3                           7                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED        4      0     66     33
  DEL PEAK 10(4Q22.1) WILD-TYPE    137     60     57    173
D61V10, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           4                           137
  CLUS_2                           0                            60
  CLUS_3                          66                            57
  CLUS_4                          33                           173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       56     26      8
  DEL PEAK 10(4Q22.1) WILD-TYPE    116     70    122
D61V11, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          56                           116
  CLUS_2                          26                            70
  CLUS_3                           8                           122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       48      5     37
  DEL PEAK 10(4Q22.1) WILD-TYPE     96    110    102
D61V12, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          48                            96
  CLUS_2                           5                           110
  CLUS_3                          37                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 11(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED        1      7      0      0
  DEL PEAK 11(4Q34.3) WILD-TYPE     13     10     12     10
D62V1, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           7                            10
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q34.3) MUTATED        2      6      0      0      0
  DEL PEAK 11(4Q34.3) WILD-TYPE     12      3      7      7     16
D62V2, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           6                             3
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q34.3) MUTATED      111      6      6      4      3
  DEL PEAK 11(4Q34.3) WILD-TYPE     58    299     13      5     34
D62V3, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                         111                            58
  CLUS_2                           6                           299
  CLUS_3                           6                            13
  CLUS_4                           4                             5
  CLUS_5                           3                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       81     22     11
  DEL PEAK 11(4Q34.3) WILD-TYPE     84     67    160
D62V4, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          81                            84
  CLUS_2                          22                            67
  CLUS_3                          11                           160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q34.3) MUTATED        6     10      2      1      3      5
  DEL PEAK 11(4Q34.3) WILD-TYPE     35     27     37     11     38     19
D62V5, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                          10                            27
  CLUS_3                           2                            37
  CLUS_4                           1                            11
  CLUS_5                           3                            38
  CLUS_6                           5                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED       12      7      5      3
  DEL PEAK 11(4Q34.3) WILD-TYPE     55     60     38     14
D62V6, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           7                            60
  CLUS_3                           5                            38
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED        8    113      8
  DEL PEAK 11(4Q34.3) WILD-TYPE    143    117    141
D62V7, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           8                           143
  CLUS_2                         113                           117
  CLUS_3                           8                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       27     95      7
  DEL PEAK 11(4Q34.3) WILD-TYPE    189     74    138
D62V8, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          27                           189
  CLUS_2                          95                            74
  CLUS_3                           7                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED      102     17      8
  DEL PEAK 11(4Q34.3) WILD-TYPE    124    126    153
D62V9, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                         102                           124
  CLUS_2                          17                           126
  CLUS_3                           8                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED        7      1     74     45
  DEL PEAK 11(4Q34.3) WILD-TYPE    134     59     49    161
D62V10, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           7                           134
  CLUS_2                           1                            59
  CLUS_3                          74                            49
  CLUS_4                          45                           161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       66     33     13
  DEL PEAK 11(4Q34.3) WILD-TYPE    106     63    117
D62V11, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          66                           106
  CLUS_2                          33                            63
  CLUS_3                          13                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       59      7     46
  DEL PEAK 11(4Q34.3) WILD-TYPE     85    108     93
D62V12, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          59                            85
  CLUS_2                           7                           108
  CLUS_3                          46                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 12(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED        1      6      0      0
  DEL PEAK 12(5Q12.1) WILD-TYPE     13     11     12     10
D63V1, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q12.1) MUTATED        3      4      0      0      0
  DEL PEAK 12(5Q12.1) WILD-TYPE     11      5      7      7     16
D63V2, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q12.1) MUTATED      103      0      2      2      4
  DEL PEAK 12(5Q12.1) WILD-TYPE     66    305     17      7     33
D63V3, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                         103                            66
  CLUS_2                           0                           305
  CLUS_3                           2                            17
  CLUS_4                           2                             7
  CLUS_5                           4                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       75     14      8
  DEL PEAK 12(5Q12.1) WILD-TYPE     90     75    163
D63V4, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          75                            90
  CLUS_2                          14                            75
  CLUS_3                           8                           163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q12.1) MUTATED        6      9      1      0      0      6
  DEL PEAK 12(5Q12.1) WILD-TYPE     35     28     38     12     41     18
D63V5, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           9                            28
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           6                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED       12      5      1      4
  DEL PEAK 12(5Q12.1) WILD-TYPE     55     62     42     13
D63V6, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           5                            62
  CLUS_3                           1                            42
  CLUS_4                           4                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED        4     95     10
  DEL PEAK 12(5Q12.1) WILD-TYPE    147    135    139
D63V7, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           4                           147
  CLUS_2                          95                           135
  CLUS_3                          10                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       19     79     11
  DEL PEAK 12(5Q12.1) WILD-TYPE    197     90    134
D63V8, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          19                           197
  CLUS_2                          79                            90
  CLUS_3                          11                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       90     10     10
  DEL PEAK 12(5Q12.1) WILD-TYPE    136    133    151
D63V9, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          90                           136
  CLUS_2                          10                           133
  CLUS_3                          10                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED        9      0     62     39
  DEL PEAK 12(5Q12.1) WILD-TYPE    132     60     61    167
D63V10, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           9                           132
  CLUS_2                           0                            60
  CLUS_3                          62                            61
  CLUS_4                          39                           167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       61     22     12
  DEL PEAK 12(5Q12.1) WILD-TYPE    111     74    118
D63V11, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          61                           111
  CLUS_2                          22                            74
  CLUS_3                          12                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       54     10     31
  DEL PEAK 12(5Q12.1) WILD-TYPE     90    105    108
D63V12, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          54                            90
  CLUS_2                          10                           105
  CLUS_3                          31                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 13(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        1      3      0      0
  DEL PEAK 13(6Q26) WILD-TYPE     13     14     12     10
D64V1, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         3                          14
  CLUS_3                         0                          12
  CLUS_4                         0                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        1      3      0      0      0
  DEL PEAK 13(6Q26) WILD-TYPE     13      6      7      7     16
D64V2, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         3                           6
  CLUS_3                         0                           7
  CLUS_4                         0                           7
  CLUS_5                         0                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED       39      4      2      1      0
  DEL PEAK 13(6Q26) WILD-TYPE    130    301     17      8     37
D64V3, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        39                         130
  CLUS_2                         4                         301
  CLUS_3                         2                          17
  CLUS_4                         1                           8
  CLUS_5                         0                          37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       31      8      1
  DEL PEAK 13(6Q26) WILD-TYPE    134     81    170
D64V4, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        31                         134
  CLUS_2                         8                          81
  CLUS_3                         1                         170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(6Q26) MUTATED        2      3      1      0      1      2
  DEL PEAK 13(6Q26) WILD-TYPE     39     34     38     12     40     22
D64V5, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         2                          39
  CLUS_2                         3                          34
  CLUS_3                         1                          38
  CLUS_4                         0                          12
  CLUS_5                         1                          40
  CLUS_6                         2                          22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        5      1      1      2
  DEL PEAK 13(6Q26) WILD-TYPE     62     66     42     15
D64V6, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         5                          62
  CLUS_2                         1                          66
  CLUS_3                         1                          42
  CLUS_4                         2                          15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED        2     42      2
  DEL PEAK 13(6Q26) WILD-TYPE    149    188    147
D64V7, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         2                         149
  CLUS_2                        42                         188
  CLUS_3                         2                         147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED        6     39      1
  DEL PEAK 13(6Q26) WILD-TYPE    210    130    144
D64V8, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         6                         210
  CLUS_2                        39                         130
  CLUS_3                         1                         144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       37      6      2
  DEL PEAK 13(6Q26) WILD-TYPE    189    137    159
D64V9, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        37                         189
  CLUS_2                         6                         137
  CLUS_3                         2                         159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        2      0     28     15
  DEL PEAK 13(6Q26) WILD-TYPE    139     60     95    191
D64V10, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         2                         139
  CLUS_2                         0                          60
  CLUS_3                        28                          95
  CLUS_4                        15                         191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       23     13      3
  DEL PEAK 13(6Q26) WILD-TYPE    149     83    127
D64V11, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        23                         149
  CLUS_2                        13                          83
  CLUS_3                         3                         127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       19      1     19
  DEL PEAK 13(6Q26) WILD-TYPE    125    114    120
D64V12, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        19                         125
  CLUS_2                         1                         114
  CLUS_3                        19                         120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 14(7P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        0      8      0      0
  DEL PEAK 14(7P22.3) WILD-TYPE     14      9     12     10
D65V1, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           8                             9
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7P22.3) MUTATED        3      5      0      0      0
  DEL PEAK 14(7P22.3) WILD-TYPE     11      4      7      7     16
D65V2, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7P22.3) MUTATED       65      4      1      1      1
  DEL PEAK 14(7P22.3) WILD-TYPE    104    301     18      8     36
D65V3, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          65                           104
  CLUS_2                           4                           301
  CLUS_3                           1                            18
  CLUS_4                           1                             8
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       45     13      4
  DEL PEAK 14(7P22.3) WILD-TYPE    120     76    167
D65V4, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          45                           120
  CLUS_2                          13                            76
  CLUS_3                           4                           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7P22.3) MUTATED        6      5      0      1      0      3
  DEL PEAK 14(7P22.3) WILD-TYPE     35     32     39     11     41     21
D65V5, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           5                            32
  CLUS_3                           0                            39
  CLUS_4                           1                            11
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        9      2      1      3
  DEL PEAK 14(7P22.3) WILD-TYPE     58     65     42     14
D65V6, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                           2                            65
  CLUS_3                           1                            42
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED        2     66      4
  DEL PEAK 14(7P22.3) WILD-TYPE    149    164    145
D65V7, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           2                           149
  CLUS_2                          66                           164
  CLUS_3                           4                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED        8     60      4
  DEL PEAK 14(7P22.3) WILD-TYPE    208    109    141
D65V8, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           8                           208
  CLUS_2                          60                           109
  CLUS_3                           4                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       60      5      5
  DEL PEAK 14(7P22.3) WILD-TYPE    166    138    156
D65V9, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          60                           166
  CLUS_2                           5                           138
  CLUS_3                           5                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        3      0     48     19
  DEL PEAK 14(7P22.3) WILD-TYPE    138     60     75    187
D65V10, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           3                           138
  CLUS_2                           0                            60
  CLUS_3                          48                            75
  CLUS_4                          19                           187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       34     18      6
  DEL PEAK 14(7P22.3) WILD-TYPE    138     78    124
D65V11, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          34                           138
  CLUS_2                          18                            78
  CLUS_3                           6                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       33      4     21
  DEL PEAK 14(7P22.3) WILD-TYPE    111    111    118
D65V12, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          33                           111
  CLUS_2                           4                           111
  CLUS_3                          21                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 15(7Q11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(7Q11.22) MUTATED        0      2      0      0
  DEL PEAK 15(7Q11.22) WILD-TYPE     14     15     12     10
D66V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 15(7Q11.22) MUTATED"
clus
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 15(7Q11.22) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(7Q11.22) MUTATED        1      1      0      0      0
  DEL PEAK 15(7Q11.22) WILD-TYPE     13      8      7      7     16
D66V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 15(7Q11.22) MUTATED"
clus
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 15(7Q11.22) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(7Q11.22) MUTATED       39      0      0      1      1
  DEL PEAK 15(7Q11.22) WILD-TYPE    130    305     19      8     36
D66V3, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           39                            130
  CLUS_2                            0                            305
  CLUS_3                            0                             19
  CLUS_4                            1                              8
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       27      8      3
  DEL PEAK 15(7Q11.22) WILD-TYPE    138     81    168
D66V4, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           27                            138
  CLUS_2                            8                             81
  CLUS_3                            3                            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(7Q11.22) MUTATED        5      3      0      0      0      2
  DEL PEAK 15(7Q11.22) WILD-TYPE     36     34     39     12     41     22
D66V5, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            3                             34
  CLUS_3                            0                             39
  CLUS_4                            0                             12
  CLUS_5                            0                             41
  CLUS_6                            2                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(7Q11.22) MUTATED        7      1      0      2
  DEL PEAK 15(7Q11.22) WILD-TYPE     60     66     43     15
D66V6, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            7                             60
  CLUS_2                            1                             66
  CLUS_3                            0                             43
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED        0     39      2
  DEL PEAK 15(7Q11.22) WILD-TYPE    151    191    147
D66V7, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            0                            151
  CLUS_2                           39                            191
  CLUS_3                            2                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED        7     31      3
  DEL PEAK 15(7Q11.22) WILD-TYPE    209    138    142
D66V8, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            7                            209
  CLUS_2                           31                            138
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       34      3      3
  DEL PEAK 15(7Q11.22) WILD-TYPE    192    140    158
D66V9, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           34                            192
  CLUS_2                            3                            140
  CLUS_3                            3                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(7Q11.22) MUTATED        3      0     26     11
  DEL PEAK 15(7Q11.22) WILD-TYPE    138     60     97    195
D66V10, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            3                            138
  CLUS_2                            0                             60
  CLUS_3                           26                             97
  CLUS_4                           11                            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       24      7      5
  DEL PEAK 15(7Q11.22) WILD-TYPE    148     89    125
D66V11, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           24                            148
  CLUS_2                            7                             89
  CLUS_3                            5                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       22      3     11
  DEL PEAK 15(7Q11.22) WILD-TYPE    122    112    128
D66V12, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           22                            122
  CLUS_2                            3                            112
  CLUS_3                           11                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 16(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(7Q31.1) MUTATED        0      3      0      0
  DEL PEAK 16(7Q31.1) WILD-TYPE     14     14     12     10
D67V1, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           3                            14
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(7Q31.1) MUTATED        1      2      0      0      0
  DEL PEAK 16(7Q31.1) WILD-TYPE     13      7      7      7     16
D67V2, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           2                             7
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(7Q31.1) MUTATED       54      0      0      1      0
  DEL PEAK 16(7Q31.1) WILD-TYPE    115    305     19      8     37
D67V3, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          54                           115
  CLUS_2                           0                           305
  CLUS_3                           0                            19
  CLUS_4                           1                             8
  CLUS_5                           0                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       38     11      1
  DEL PEAK 16(7Q31.1) WILD-TYPE    127     78    170
D67V4, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          38                           127
  CLUS_2                          11                            78
  CLUS_3                           1                           170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(7Q31.1) MUTATED        4      5      1      0      0      3
  DEL PEAK 16(7Q31.1) WILD-TYPE     37     32     38     12     41     21
D67V5, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           5                            32
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(7Q31.1) MUTATED        9      2      0      2
  DEL PEAK 16(7Q31.1) WILD-TYPE     58     65     43     15
D67V6, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                           2                            65
  CLUS_3                           0                            43
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED        0     54      1
  DEL PEAK 16(7Q31.1) WILD-TYPE    151    176    148
D67V7, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           0                           151
  CLUS_2                          54                           176
  CLUS_3                           1                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED        5     48      2
  DEL PEAK 16(7Q31.1) WILD-TYPE    211    121    143
D67V8, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           5                           211
  CLUS_2                          48                           121
  CLUS_3                           2                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       49      2      3
  DEL PEAK 16(7Q31.1) WILD-TYPE    177    141    158
D67V9, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          49                           177
  CLUS_2                           2                           141
  CLUS_3                           3                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(7Q31.1) MUTATED        3      0     41     10
  DEL PEAK 16(7Q31.1) WILD-TYPE    138     60     82    196
D67V10, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           3                           138
  CLUS_2                           0                            60
  CLUS_3                          41                            82
  CLUS_4                          10                           196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       32     10      5
  DEL PEAK 16(7Q31.1) WILD-TYPE    140     86    125
D67V11, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          32                           140
  CLUS_2                          10                            86
  CLUS_3                           5                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       27      4     16
  DEL PEAK 16(7Q31.1) WILD-TYPE    117    111    123
D67V12, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          27                           117
  CLUS_2                           4                           111
  CLUS_3                          16                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 17(7Q36.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q36.1) MUTATED        1      4      1      0
  DEL PEAK 17(7Q36.1) WILD-TYPE     13     13     11     10
D68V1, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           4                            13
  CLUS_3                           1                            11
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(7Q36.1) MUTATED        2      3      1      0      0
  DEL PEAK 17(7Q36.1) WILD-TYPE     12      6      6      7     16
D68V2, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           3                             6
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(7Q36.1) MUTATED       60      1      0      1      1
  DEL PEAK 17(7Q36.1) WILD-TYPE    109    304     19      8     36
D68V3, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          60                           109
  CLUS_2                           1                           304
  CLUS_3                           0                            19
  CLUS_4                           1                             8
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       41     12      1
  DEL PEAK 17(7Q36.1) WILD-TYPE    124     77    170
D68V4, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          41                           124
  CLUS_2                          12                            77
  CLUS_3                           1                           170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(7Q36.1) MUTATED        5      7      1      0      0      3
  DEL PEAK 17(7Q36.1) WILD-TYPE     36     30     38     12     41     21
D68V5, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           7                            30
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q36.1) MUTATED       12      3      0      1
  DEL PEAK 17(7Q36.1) WILD-TYPE     55     64     43     16
D68V6, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           3                            64
  CLUS_3                           0                            43
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED        0     62      1
  DEL PEAK 17(7Q36.1) WILD-TYPE    151    168    148
D68V7, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           0                           151
  CLUS_2                          62                           168
  CLUS_3                           1                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED        4     57      2
  DEL PEAK 17(7Q36.1) WILD-TYPE    212    112    143
D68V8, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           4                           212
  CLUS_2                          57                           112
  CLUS_3                           2                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       57      2      3
  DEL PEAK 17(7Q36.1) WILD-TYPE    169    141    158
D68V9, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          57                           169
  CLUS_2                           2                           141
  CLUS_3                           3                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q36.1) MUTATED        3      0     47     12
  DEL PEAK 17(7Q36.1) WILD-TYPE    138     60     76    194
D68V10, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           3                           138
  CLUS_2                           0                            60
  CLUS_3                          47                            76
  CLUS_4                          12                           194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       34     11      5
  DEL PEAK 17(7Q36.1) WILD-TYPE    138     85    125
D68V11, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          34                           138
  CLUS_2                          11                            85
  CLUS_3                           5                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       31      3     16
  DEL PEAK 17(7Q36.1) WILD-TYPE    113    112    123
D68V12, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          31                           113
  CLUS_2                           3                           112
  CLUS_3                          16                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 18(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED        0      6      0      0
  DEL PEAK 18(8P23.2) WILD-TYPE     14     11     12     10
D69V1, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(8P23.2) MUTATED        0      6      0      0      0
  DEL PEAK 18(8P23.2) WILD-TYPE     14      3      7      7     16
D69V2, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                             3
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(8P23.2) MUTATED      107      7      4      1      0
  DEL PEAK 18(8P23.2) WILD-TYPE     62    298     15      8     37
D69V3, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                         107                            62
  CLUS_2                           7                           298
  CLUS_3                           4                            15
  CLUS_4                           1                             8
  CLUS_5                           0                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       84     16      5
  DEL PEAK 18(8P23.2) WILD-TYPE     81     73    166
D69V4, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          84                            81
  CLUS_2                          16                            73
  CLUS_3                           5                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(8P23.2) MUTATED        7      4      4      1      1      7
  DEL PEAK 18(8P23.2) WILD-TYPE     34     33     35     11     40     17
D69V5, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           7                            34
  CLUS_2                           4                            33
  CLUS_3                           4                            35
  CLUS_4                           1                            11
  CLUS_5                           1                            40
  CLUS_6                           7                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       12      5      2      5
  DEL PEAK 18(8P23.2) WILD-TYPE     55     62     41     12
D69V6, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           5                            62
  CLUS_3                           2                            41
  CLUS_4                           5                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED        5    106      5
  DEL PEAK 18(8P23.2) WILD-TYPE    146    124    144
D69V7, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           5                           146
  CLUS_2                         106                           124
  CLUS_3                           5                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       16     94      6
  DEL PEAK 18(8P23.2) WILD-TYPE    200     75    139
D69V8, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          16                           200
  CLUS_2                          94                            75
  CLUS_3                           6                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED      104      5      7
  DEL PEAK 18(8P23.2) WILD-TYPE    122    138    154
D69V9, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                         104                           122
  CLUS_2                           5                           138
  CLUS_3                           7                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED        6      1     75     34
  DEL PEAK 18(8P23.2) WILD-TYPE    135     59     48    172
D69V10, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           6                           135
  CLUS_2                           1                            59
  CLUS_3                          75                            48
  CLUS_4                          34                           172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       68     22      9
  DEL PEAK 18(8P23.2) WILD-TYPE    104     74    121
D69V11, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          68                           104
  CLUS_2                          22                            74
  CLUS_3                           9                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       61      4     34
  DEL PEAK 18(8P23.2) WILD-TYPE     83    111    105
D69V12, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          61                            83
  CLUS_2                           4                           111
  CLUS_3                          34                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 19(8P21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P21.2) MUTATED        0      6      0      0
  DEL PEAK 19(8P21.2) WILD-TYPE     14     11     12     10
D70V1, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(8P21.2) MUTATED        0      6      0      0      0
  DEL PEAK 19(8P21.2) WILD-TYPE     14      3      7      7     16
D70V2, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                             3
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(8P21.2) MUTATED      109      4      3      1      0
  DEL PEAK 19(8P21.2) WILD-TYPE     60    301     16      8     37
D70V3, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                         109                            60
  CLUS_2                           4                           301
  CLUS_3                           3                            16
  CLUS_4                           1                             8
  CLUS_5                           0                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED       86     15      2
  DEL PEAK 19(8P21.2) WILD-TYPE     79     74    169
D70V4, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          86                            79
  CLUS_2                          15                            74
  CLUS_3                           2                           169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(8P21.2) MUTATED        7      5      3      0      1      7
  DEL PEAK 19(8P21.2) WILD-TYPE     34     32     36     12     40     17
D70V5, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           7                            34
  CLUS_2                           5                            32
  CLUS_3                           3                            36
  CLUS_4                           0                            12
  CLUS_5                           1                            40
  CLUS_6                           7                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P21.2) MUTATED       13      4      1      5
  DEL PEAK 19(8P21.2) WILD-TYPE     54     63     42     12
D70V6, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          13                            54
  CLUS_2                           4                            63
  CLUS_3                           1                            42
  CLUS_4                           5                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED        4    108      2
  DEL PEAK 19(8P21.2) WILD-TYPE    147    122    147
D70V7, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           4                           147
  CLUS_2                         108                           122
  CLUS_3                           2                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED       14     97      3
  DEL PEAK 19(8P21.2) WILD-TYPE    202     72    142
D70V8, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          14                           202
  CLUS_2                          97                            72
  CLUS_3                           3                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED      106      5      3
  DEL PEAK 19(8P21.2) WILD-TYPE    120    138    158
D70V9, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                         106                           120
  CLUS_2                           5                           138
  CLUS_3                           3                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P21.2) MUTATED        3      1     80     30
  DEL PEAK 19(8P21.2) WILD-TYPE    138     59     43    176
D70V10, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           3                           138
  CLUS_2                           1                            59
  CLUS_3                          80                            43
  CLUS_4                          30                           176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED       68     23      7
  DEL PEAK 19(8P21.2) WILD-TYPE    104     73    123
D70V11, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          68                           104
  CLUS_2                          23                            73
  CLUS_3                           7                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED       62      2     34
  DEL PEAK 19(8P21.2) WILD-TYPE     82    113    105
D70V12, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          62                            82
  CLUS_2                           2                           113
  CLUS_3                          34                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 20(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P23) MUTATED        1      3      0      0
  DEL PEAK 20(9P23) WILD-TYPE     13     14     12     10
D71V1, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         3                          14
  CLUS_3                         0                          12
  CLUS_4                         0                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(9P23) MUTATED        1      3      0      0      0
  DEL PEAK 20(9P23) WILD-TYPE     13      6      7      7     16
D71V2, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         3                           6
  CLUS_3                         0                           7
  CLUS_4                         0                           7
  CLUS_5                         0                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(9P23) MUTATED       67      2      5      1      4
  DEL PEAK 20(9P23) WILD-TYPE    102    303     14      8     33
D71V3, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        67                         102
  CLUS_2                         2                         303
  CLUS_3                         5                          14
  CLUS_4                         1                           8
  CLUS_5                         4                          33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       44     18      8
  DEL PEAK 20(9P23) WILD-TYPE    121     71    163
D71V4, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        44                         121
  CLUS_2                        18                          71
  CLUS_3                         8                         163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(9P23) MUTATED        4      5      1      1      0      5
  DEL PEAK 20(9P23) WILD-TYPE     37     32     38     11     41     19
D71V5, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         4                          37
  CLUS_2                         5                          32
  CLUS_3                         1                          38
  CLUS_4                         1                          11
  CLUS_5                         0                          41
  CLUS_6                         5                          19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P23) MUTATED        6      5      2      3
  DEL PEAK 20(9P23) WILD-TYPE     61     62     41     14
D71V6, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         6                          61
  CLUS_2                         5                          62
  CLUS_3                         2                          41
  CLUS_4                         3                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED        5     62     11
  DEL PEAK 20(9P23) WILD-TYPE    146    168    138
D71V7, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         5                         146
  CLUS_2                        62                         168
  CLUS_3                        11                         138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       13     54     11
  DEL PEAK 20(9P23) WILD-TYPE    203    115    134
D71V8, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        13                         203
  CLUS_2                        54                         115
  CLUS_3                        11                         134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       57      7     14
  DEL PEAK 20(9P23) WILD-TYPE    169    136    147
D71V9, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        57                         169
  CLUS_2                         7                         136
  CLUS_3                        14                         147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P23) MUTATED       11      1     47     19
  DEL PEAK 20(9P23) WILD-TYPE    130     59     76    187
D71V10, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        11                         130
  CLUS_2                         1                          59
  CLUS_3                        47                          76
  CLUS_4                        19                         187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       37     18     13
  DEL PEAK 20(9P23) WILD-TYPE    135     78    117
D71V11, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        37                         135
  CLUS_2                        18                          78
  CLUS_3                        13                         117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       35     11     22
  DEL PEAK 20(9P23) WILD-TYPE    109    104    117
D71V12, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        35                         109
  CLUS_2                        11                         104
  CLUS_3                        22                         117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 21(9Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9Q21.2) MUTATED        0      9      0      0
  DEL PEAK 21(9Q21.2) WILD-TYPE     14      8     12     10
D72V1, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           9                             8
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(9Q21.2) MUTATED        2      7      0      0      0
  DEL PEAK 21(9Q21.2) WILD-TYPE     12      2      7      7     16
D72V2, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           7                             2
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(9Q21.2) MUTATED      112      3      7      2      5
  DEL PEAK 21(9Q21.2) WILD-TYPE     57    302     12      7     32
D72V3, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                         112                            57
  CLUS_2                           3                           302
  CLUS_3                           7                            12
  CLUS_4                           2                             7
  CLUS_5                           5                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       78     20     15
  DEL PEAK 21(9Q21.2) WILD-TYPE     87     69    156
D72V4, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          78                            87
  CLUS_2                          20                            69
  CLUS_3                          15                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(9Q21.2) MUTATED        6     12      1      2      1      6
  DEL PEAK 21(9Q21.2) WILD-TYPE     35     25     38     10     40     18
D72V5, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                          12                            25
  CLUS_3                           1                            38
  CLUS_4                           2                            10
  CLUS_5                           1                            40
  CLUS_6                           6                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9Q21.2) MUTATED       12      8      5      3
  DEL PEAK 21(9Q21.2) WILD-TYPE     55     59     38     14
D72V6, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           8                            59
  CLUS_3                           5                            38
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED        8    103     16
  DEL PEAK 21(9Q21.2) WILD-TYPE    143    127    133
D72V7, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           8                           143
  CLUS_2                         103                           127
  CLUS_3                          16                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       21     90     16
  DEL PEAK 21(9Q21.2) WILD-TYPE    195     79    129
D72V8, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          21                           195
  CLUS_2                          90                            79
  CLUS_3                          16                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       96     13     17
  DEL PEAK 21(9Q21.2) WILD-TYPE    130    130    144
D72V9, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          96                           130
  CLUS_2                          13                           130
  CLUS_3                          17                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9Q21.2) MUTATED       17      2     70     37
  DEL PEAK 21(9Q21.2) WILD-TYPE    124     58     53    169
D72V10, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          17                           124
  CLUS_2                           2                            58
  CLUS_3                          70                            53
  CLUS_4                          37                           169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       61     29     20
  DEL PEAK 21(9Q21.2) WILD-TYPE    111     67    110
D72V11, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          61                           111
  CLUS_2                          29                            67
  CLUS_3                          20                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       61     16     33
  DEL PEAK 21(9Q21.2) WILD-TYPE     83     99    106
D72V12, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          61                            83
  CLUS_2                          16                            99
  CLUS_3                          33                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 22(9Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9Q34.2) MUTATED        0      9      0      0
  DEL PEAK 22(9Q34.2) WILD-TYPE     14      8     12     10
D73V1, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           9                             8
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(9Q34.2) MUTATED        2      7      0      0      0
  DEL PEAK 22(9Q34.2) WILD-TYPE     12      2      7      7     16
D73V2, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           7                             2
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(9Q34.2) MUTATED      117      4      6      1      4
  DEL PEAK 22(9Q34.2) WILD-TYPE     52    301     13      8     33
D73V3, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                         117                            52
  CLUS_2                           4                           301
  CLUS_3                           6                            13
  CLUS_4                           1                             8
  CLUS_5                           4                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       78     23     13
  DEL PEAK 22(9Q34.2) WILD-TYPE     87     66    158
D73V4, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          78                            87
  CLUS_2                          23                            66
  CLUS_3                          13                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(9Q34.2) MUTATED        7     13      2      2      1      6
  DEL PEAK 22(9Q34.2) WILD-TYPE     34     24     37     10     40     18
D73V5, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           7                            34
  CLUS_2                          13                            24
  CLUS_3                           2                            37
  CLUS_4                           2                            10
  CLUS_5                           1                            40
  CLUS_6                           6                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9Q34.2) MUTATED       15      8      5      3
  DEL PEAK 22(9Q34.2) WILD-TYPE     52     59     38     14
D73V6, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          15                            52
  CLUS_2                           8                            59
  CLUS_3                           5                            38
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED        8    105     17
  DEL PEAK 22(9Q34.2) WILD-TYPE    143    125    132
D73V7, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           8                           143
  CLUS_2                         105                           125
  CLUS_3                          17                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       25     89     16
  DEL PEAK 22(9Q34.2) WILD-TYPE    191     80    129
D73V8, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          25                           191
  CLUS_2                          89                            80
  CLUS_3                          16                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       98     13     18
  DEL PEAK 22(9Q34.2) WILD-TYPE    128    130    143
D73V9, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          98                           128
  CLUS_2                          13                           130
  CLUS_3                          18                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9Q34.2) MUTATED       17      2     70     40
  DEL PEAK 22(9Q34.2) WILD-TYPE    124     58     53    166
D73V10, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          17                           124
  CLUS_2                           2                            58
  CLUS_3                          70                            53
  CLUS_4                          40                           166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       64     27     20
  DEL PEAK 22(9Q34.2) WILD-TYPE    108     69    110
D73V11, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          64                           108
  CLUS_2                          27                            69
  CLUS_3                          20                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       65     17     29
  DEL PEAK 22(9Q34.2) WILD-TYPE     79     98    110
D73V12, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          65                            79
  CLUS_2                          17                            98
  CLUS_3                          29                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = DEL PEAK 23(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q23.31) MUTATED        0      3      0      0
  DEL PEAK 23(10Q23.31) WILD-TYPE     14     14     12     10
D74V1, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             0                              14
  CLUS_2                             3                              14
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10Q23.31) MUTATED        1      2      0      0      0
  DEL PEAK 23(10Q23.31) WILD-TYPE     13      7      7      7     16
D74V2, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             2                               7
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10Q23.31) MUTATED       70      5      2      0      0
  DEL PEAK 23(10Q23.31) WILD-TYPE     99    300     17      9     37
D74V3, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            70                              99
  CLUS_2                             5                             300
  CLUS_3                             2                              17
  CLUS_4                             0                               9
  CLUS_5                             0                              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       49     13      6
  DEL PEAK 23(10Q23.31) WILD-TYPE    116     76    165
D74V4, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            49                             116
  CLUS_2                            13                              76
  CLUS_3                             6                             165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10Q23.31) MUTATED        4      7      3      1      0      2
  DEL PEAK 23(10Q23.31) WILD-TYPE     37     30     36     11     41     22
D74V5, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             4                              37
  CLUS_2                             7                              30
  CLUS_3                             3                              36
  CLUS_4                             1                              11
  CLUS_5                             0                              41
  CLUS_6                             2                              22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q23.31) MUTATED        6      6      4      1
  DEL PEAK 23(10Q23.31) WILD-TYPE     61     61     39     16
D74V6, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             6                              61
  CLUS_2                             6                              61
  CLUS_3                             4                              39
  CLUS_4                             1                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED        4     62      8
  DEL PEAK 23(10Q23.31) WILD-TYPE    147    168    141
D74V7, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             4                             147
  CLUS_2                            62                             168
  CLUS_3                             8                             141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       14     52      8
  DEL PEAK 23(10Q23.31) WILD-TYPE    202    117    137
D74V8, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            14                             202
  CLUS_2                            52                             117
  CLUS_3                             8                             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       61      7      8
  DEL PEAK 23(10Q23.31) WILD-TYPE    165    136    153
D74V9, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            61                             165
  CLUS_2                             7                             136
  CLUS_3                             8                             153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q23.31) MUTATED        9      1     42     24
  DEL PEAK 23(10Q23.31) WILD-TYPE    132     59     81    182
D74V10, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             9                             132
  CLUS_2                             1                              59
  CLUS_3                            42                              81
  CLUS_4                            24                             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       43     12     12
  DEL PEAK 23(10Q23.31) WILD-TYPE    129     84    118
D74V11, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            43                             129
  CLUS_2                            12                              84
  CLUS_3                            12                             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       41      7     19
  DEL PEAK 23(10Q23.31) WILD-TYPE    103    108    120
D74V12, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            41                             103
  CLUS_2                             7                             108
  CLUS_3                            19                             120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = DEL PEAK 24(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11P15.5) MUTATED        1      3      0      0
  DEL PEAK 24(11P15.5) WILD-TYPE     13     14     12     10
D75V1, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11P15.5) MUTATED        2      2      0      0      0
  DEL PEAK 24(11P15.5) WILD-TYPE     12      7      7      7     16
D75V2, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11P15.5) MUTATED       94      1      6      4      1
  DEL PEAK 24(11P15.5) WILD-TYPE     75    304     13      5     36
D75V3, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           94                             75
  CLUS_2                            1                            304
  CLUS_3                            6                             13
  CLUS_4                            4                              5
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       74     17      6
  DEL PEAK 24(11P15.5) WILD-TYPE     91     72    165
D75V4, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           74                             91
  CLUS_2                           17                             72
  CLUS_3                            6                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11P15.5) MUTATED        4      6      2      0      2      4
  DEL PEAK 24(11P15.5) WILD-TYPE     37     31     37     12     39     20
D75V5, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            6                             31
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            2                             39
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11P15.5) MUTATED        9      2      4      3
  DEL PEAK 24(11P15.5) WILD-TYPE     58     65     39     14
D75V6, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            2                             65
  CLUS_3                            4                             39
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED        3     88     12
  DEL PEAK 24(11P15.5) WILD-TYPE    148    142    137
D75V7, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            3                            148
  CLUS_2                           88                            142
  CLUS_3                           12                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       15     76     12
  DEL PEAK 24(11P15.5) WILD-TYPE    201     93    133
D75V8, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           15                            201
  CLUS_2                           76                             93
  CLUS_3                           12                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       84      8     13
  DEL PEAK 24(11P15.5) WILD-TYPE    142    135    148
D75V9, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           84                            142
  CLUS_2                            8                            135
  CLUS_3                           13                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11P15.5) MUTATED       13      1     64     27
  DEL PEAK 24(11P15.5) WILD-TYPE    128     59     59    179
D75V10, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           13                            128
  CLUS_2                            1                             59
  CLUS_3                           64                             59
  CLUS_4                           27                            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       66     18     13
  DEL PEAK 24(11P15.5) WILD-TYPE    106     78    117
D75V11, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           66                            106
  CLUS_2                           18                             78
  CLUS_3                           13                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       62     12     23
  DEL PEAK 24(11P15.5) WILD-TYPE     82    103    116
D75V12, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           62                             82
  CLUS_2                           12                            103
  CLUS_3                           23                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = DEL PEAK 25(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11Q14.1) MUTATED        0      1      0      0
  DEL PEAK 25(11Q14.1) WILD-TYPE     14     16     12     10
D76V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 25(11Q14.1) MUTATED"
clus
  DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE 
                             1                             52 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11Q14.1) MUTATED        1      0      0      0      0
  DEL PEAK 25(11Q14.1) WILD-TYPE     13      9      7      7     16
D76V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 25(11Q14.1) MUTATED"
clus
  DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE 
                             1                             52 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11Q14.1) MUTATED       61      0      4      4      1
  DEL PEAK 25(11Q14.1) WILD-TYPE    108    305     15      5     36
D76V3, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           61                            108
  CLUS_2                            0                            305
  CLUS_3                            4                             15
  CLUS_4                            4                              5
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED       51     10      5
  DEL PEAK 25(11Q14.1) WILD-TYPE    114     79    166
D76V4, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           51                            114
  CLUS_2                           10                             79
  CLUS_3                            5                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11Q14.1) MUTATED        3      4      2      0      1      3
  DEL PEAK 25(11Q14.1) WILD-TYPE     38     33     37     12     40     21
D76V5, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            4                             33
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11Q14.1) MUTATED        7      3      2      1
  DEL PEAK 25(11Q14.1) WILD-TYPE     60     64     41     16
D76V6, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                            7                             60
  CLUS_2                            3                             64
  CLUS_3                            2                             41
  CLUS_4                            1                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED        2     59      7
  DEL PEAK 25(11Q14.1) WILD-TYPE    149    171    142
D76V7, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                            2                            149
  CLUS_2                           59                            171
  CLUS_3                            7                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED        8     54      6
  DEL PEAK 25(11Q14.1) WILD-TYPE    208    115    139
D76V8, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                            8                            208
  CLUS_2                           54                            115
  CLUS_3                            6                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED       56      6      8
  DEL PEAK 25(11Q14.1) WILD-TYPE    170    137    153
D76V9, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           56                            170
  CLUS_2                            6                            137
  CLUS_3                            8                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11Q14.1) MUTATED        6      0     46     18
  DEL PEAK 25(11Q14.1) WILD-TYPE    135     60     77    188
D76V10, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                            6                            135
  CLUS_2                            0                             60
  CLUS_3                           46                             77
  CLUS_4                           18                            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED       46     12      7
  DEL PEAK 25(11Q14.1) WILD-TYPE    126     84    123
D76V11, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           46                            126
  CLUS_2                           12                             84
  CLUS_3                            7                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED       42      6     17
  DEL PEAK 25(11Q14.1) WILD-TYPE    102    109    122
D76V12, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           42                            102
  CLUS_2                            6                            109
  CLUS_3                           17                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = DEL PEAK 26(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q25) MUTATED        0      2      0      0
  DEL PEAK 26(11Q25) WILD-TYPE     14     15     12     10
D77V1, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 26(11Q25) MUTATED"
clus
  DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A053                   TCGA-AP-A054 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A056                   TCGA-AP-A05A 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A05H                   TCGA-AP-A05J 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A05N                   TCGA-AP-A05P 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0L8                   TCGA-AP-A0L9 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LD                   TCGA-AP-A0LG 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LH                   TCGA-AP-A0LJ 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LN                   TCGA-AP-A0LT 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LV                   TCGA-AX-A05S 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05T                   TCGA-AX-A05U 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05W                   TCGA-AX-A05Y 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05Z                   TCGA-AX-A060 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A062                   TCGA-AX-A063 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A064                   TCGA-AX-A06B 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A06F                   TCGA-AX-A06J 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A0IW                   TCGA-AX-A0J1 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0JR                   TCGA-B5-A0JZ 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 26(11Q25) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(11Q25) MUTATED        0      2      0      0      0
  DEL PEAK 26(11Q25) WILD-TYPE     14      7      7      7     16
D77V2, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 26(11Q25) MUTATED"
clus
  DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A053                   TCGA-AP-A054 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A056                   TCGA-AP-A05A 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A05H                   TCGA-AP-A05J 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A05N                   TCGA-AP-A05P 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0L8                   TCGA-AP-A0L9 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LD                   TCGA-AP-A0LG 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LH                   TCGA-AP-A0LJ 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LN                   TCGA-AP-A0LT 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LV                   TCGA-AX-A05S 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05T                   TCGA-AX-A05U 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05W                   TCGA-AX-A05Y 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05Z                   TCGA-AX-A060 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A062                   TCGA-AX-A063 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A064                   TCGA-AX-A06B 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A06F                   TCGA-AX-A06J 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A0IW                   TCGA-AX-A0J1 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0JR                   TCGA-B5-A0JZ 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 26(11Q25) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(11Q25) MUTATED       77      3      6      4      3
  DEL PEAK 26(11Q25) WILD-TYPE     92    302     13      5     34
D77V3, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         77                           92
  CLUS_2                          3                          302
  CLUS_3                          6                           13
  CLUS_4                          4                            5
  CLUS_5                          3                           34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       66     11      7
  DEL PEAK 26(11Q25) WILD-TYPE     99     78    164
D77V4, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         66                           99
  CLUS_2                         11                           78
  CLUS_3                          7                          164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(11Q25) MUTATED        2      7      4      1      1      4
  DEL PEAK 26(11Q25) WILD-TYPE     39     30     35     11     40     20
D77V5, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                          2                           39
  CLUS_2                          7                           30
  CLUS_3                          4                           35
  CLUS_4                          1                           11
  CLUS_5                          1                           40
  CLUS_6                          4                           20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q25) MUTATED        7      7      4      1
  DEL PEAK 26(11Q25) WILD-TYPE     60     60     39     16
D77V6, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                          7                           60
  CLUS_2                          7                           60
  CLUS_3                          4                           39
  CLUS_4                          1                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED        6     75     10
  DEL PEAK 26(11Q25) WILD-TYPE    145    155    139
D77V7, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                          6                          145
  CLUS_2                         75                          155
  CLUS_3                         10                          139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       17     65      9
  DEL PEAK 26(11Q25) WILD-TYPE    199    104    136
D77V8, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         17                          199
  CLUS_2                         65                          104
  CLUS_3                          9                          136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       68     11     12
  DEL PEAK 26(11Q25) WILD-TYPE    158    132    149
D77V9, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         68                          158
  CLUS_2                         11                          132
  CLUS_3                         12                          149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q25) MUTATED        7      1     52     31
  DEL PEAK 26(11Q25) WILD-TYPE    134     59     71    175
D77V10, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                          7                          134
  CLUS_2                          1                           59
  CLUS_3                         52                           71
  CLUS_4                         31                          175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       53     18     11
  DEL PEAK 26(11Q25) WILD-TYPE    119     78    119
D77V11, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         53                          119
  CLUS_2                         18                           78
  CLUS_3                         11                          119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       49      8     25
  DEL PEAK 26(11Q25) WILD-TYPE     95    107    114
D77V12, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         49                           95
  CLUS_2                          8                          107
  CLUS_3                         25                          114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = DEL PEAK 27(12Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q23.1) MUTATED        0      2      0      0
  DEL PEAK 27(12Q23.1) WILD-TYPE     14     15     12     10
D78V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 27(12Q23.1) MUTATED"
clus
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 27(12Q23.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q23.1) MUTATED        0      2      0      0      0
  DEL PEAK 27(12Q23.1) WILD-TYPE     14      7      7      7     16
D78V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 27(12Q23.1) MUTATED"
clus
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 27(12Q23.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q23.1) MUTATED       54      0      1      0      1
  DEL PEAK 27(12Q23.1) WILD-TYPE    115    305     18      9     36
D78V3, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           54                            115
  CLUS_2                            0                            305
  CLUS_3                            1                             18
  CLUS_4                            0                              9
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       42      6      0
  DEL PEAK 27(12Q23.1) WILD-TYPE    123     83    171
D78V4, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           42                            123
  CLUS_2                            6                             83
  CLUS_3                            0                            171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED        3      7      2      0      0      2
  DEL PEAK 27(12Q23.1) WILD-TYPE     38     30     37     12     41     22
D78V5, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            7                             30
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            0                             41
  CLUS_6                            2                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q23.1) MUTATED        9      3      0      2
  DEL PEAK 27(12Q23.1) WILD-TYPE     58     64     43     15
D78V6, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            3                             64
  CLUS_3                            0                             43
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED        1     50      4
  DEL PEAK 27(12Q23.1) WILD-TYPE    150    180    145
D78V7, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            1                            150
  CLUS_2                           50                            180
  CLUS_3                            4                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED        3     47      5
  DEL PEAK 27(12Q23.1) WILD-TYPE    213    122    140
D78V8, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            3                            213
  CLUS_2                           47                            122
  CLUS_3                            5                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       46      6      2
  DEL PEAK 27(12Q23.1) WILD-TYPE    180    137    159
D78V9, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           46                            180
  CLUS_2                            6                            137
  CLUS_3                            2                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q23.1) MUTATED        0      1     37     16
  DEL PEAK 27(12Q23.1) WILD-TYPE    141     59     86    190
D78V10, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            0                            141
  CLUS_2                            1                             59
  CLUS_3                           37                             86
  CLUS_4                           16                            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       32     11      4
  DEL PEAK 27(12Q23.1) WILD-TYPE    140     85    126
D78V11, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           32                            140
  CLUS_2                           11                             85
  CLUS_3                            4                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       30      2     15
  DEL PEAK 27(12Q23.1) WILD-TYPE    114    113    124
D78V12, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           30                            114
  CLUS_2                            2                            113
  CLUS_3                           15                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = DEL PEAK 28(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q24.33) MUTATED        0      2      0      0
  DEL PEAK 28(12Q24.33) WILD-TYPE     14     15     12     10
D79V1, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 28(12Q24.33) MUTATED"
clus
  DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE 
                              2                              51 
                     TCGA-A5-A0G2                      TCGA-A5-A0G5 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GA                      TCGA-A5-A0GB 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GE                      TCGA-A5-A0GH 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GM                      TCGA-A5-A0GP 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GU                      TCGA-AP-A051 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A053                      TCGA-AP-A054 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A056                      TCGA-AP-A05A 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05D                      TCGA-AP-A05J 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05N                      TCGA-AP-A05P 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0L8                      TCGA-AP-A0L9 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LD                      TCGA-AP-A0LG 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LH                      TCGA-AP-A0LJ 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LN                      TCGA-AP-A0LT 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LV                      TCGA-AX-A05S 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05T                      TCGA-AX-A05U 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05W                      TCGA-AX-A05Y 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05Z                      TCGA-AX-A060 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A062                      TCGA-AX-A063 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A064                      TCGA-AX-A06B 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A06F                      TCGA-AX-A06J 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A0IW                      TCGA-AX-A0J1 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0JR                      TCGA-B5-A0JZ 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K0                      TCGA-B5-A0K1 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K4                      TCGA-BG-A0LW 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-BG-A0MI                      TCGA-BK-A0C9 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-BK-A0CC 
"DEL PEAK 28(12Q24.33) WILD-TYPE" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q24.33) MUTATED        0      2      0      0      0
  DEL PEAK 28(12Q24.33) WILD-TYPE     14      7      7      7     16
D79V2, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 28(12Q24.33) MUTATED"
clus
  DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE 
                              2                              51 
                     TCGA-A5-A0G2                      TCGA-A5-A0G5 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GA                      TCGA-A5-A0GB 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GE                      TCGA-A5-A0GH 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GM                      TCGA-A5-A0GP 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GU                      TCGA-AP-A051 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A053                      TCGA-AP-A054 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A056                      TCGA-AP-A05A 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05D                      TCGA-AP-A05J 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05N                      TCGA-AP-A05P 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0L8                      TCGA-AP-A0L9 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LD                      TCGA-AP-A0LG 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LH                      TCGA-AP-A0LJ 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LN                      TCGA-AP-A0LT 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LV                      TCGA-AX-A05S 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05T                      TCGA-AX-A05U 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05W                      TCGA-AX-A05Y 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05Z                      TCGA-AX-A060 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A062                      TCGA-AX-A063 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A064                      TCGA-AX-A06B 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A06F                      TCGA-AX-A06J 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A0IW                      TCGA-AX-A0J1 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0JR                      TCGA-B5-A0JZ 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K0                      TCGA-B5-A0K1 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K4                      TCGA-BG-A0LW 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-BG-A0MI                      TCGA-BK-A0C9 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-BK-A0CC 
"DEL PEAK 28(12Q24.33) WILD-TYPE" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q24.33) MUTATED       63      1      1      0      1
  DEL PEAK 28(12Q24.33) WILD-TYPE    106    304     18      9     36
D79V3, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            63                             106
  CLUS_2                             1                             304
  CLUS_3                             1                              18
  CLUS_4                             0                               9
  CLUS_5                             1                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED       50      8      3
  DEL PEAK 28(12Q24.33) WILD-TYPE    115     81    168
D79V4, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            50                             115
  CLUS_2                             8                              81
  CLUS_3                             3                             168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.33) MUTATED        2      6      1      0      0      2
  DEL PEAK 28(12Q24.33) WILD-TYPE     39     31     38     12     41     22
D79V5, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                             2                              39
  CLUS_2                             6                              31
  CLUS_3                             1                              38
  CLUS_4                             0                              12
  CLUS_5                             0                              41
  CLUS_6                             2                              22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q24.33) MUTATED        7      2      0      2
  DEL PEAK 28(12Q24.33) WILD-TYPE     60     65     43     15
D79V6, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                             7                              60
  CLUS_2                             2                              65
  CLUS_3                             0                              43
  CLUS_4                             2                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED        1     61      3
  DEL PEAK 28(12Q24.33) WILD-TYPE    150    169    146
D79V7, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                             1                             150
  CLUS_2                            61                             169
  CLUS_3                             3                             146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED        9     52      4
  DEL PEAK 28(12Q24.33) WILD-TYPE    207    117    141
D79V8, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                             9                             207
  CLUS_2                            52                             117
  CLUS_3                             4                             141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED       55      6      3
  DEL PEAK 28(12Q24.33) WILD-TYPE    171    137    158
D79V9, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            55                             171
  CLUS_2                             6                             137
  CLUS_3                             3                             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q24.33) MUTATED        2      1     39     22
  DEL PEAK 28(12Q24.33) WILD-TYPE    139     59     84    184
D79V10, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                             2                             139
  CLUS_2                             1                              59
  CLUS_3                            39                              84
  CLUS_4                            22                             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED       40     12      7
  DEL PEAK 28(12Q24.33) WILD-TYPE    132     84    123
D79V11, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            40                             132
  CLUS_2                            12                              84
  CLUS_3                             7                             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED       37      4     18
  DEL PEAK 28(12Q24.33) WILD-TYPE    107    111    121
D79V12, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            37                             107
  CLUS_2                             4                             111
  CLUS_3                            18                             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = DEL PEAK 29(13Q11) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q11) MUTATED        1      4      1      0
  DEL PEAK 29(13Q11) WILD-TYPE     13     13     11     10
D80V1, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          4                           13
  CLUS_3                          1                           11
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q11) MUTATED        3      3      0      0      0
  DEL PEAK 29(13Q11) WILD-TYPE     11      6      7      7     16
D80V2, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          3                           11
  CLUS_2                          3                            6
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q11) MUTATED       80      3      6      3      6
  DEL PEAK 29(13Q11) WILD-TYPE     89    302     13      6     31
D80V3, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         80                           89
  CLUS_2                          3                          302
  CLUS_3                          6                           13
  CLUS_4                          3                            6
  CLUS_5                          6                           31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       57     17     10
  DEL PEAK 29(13Q11) WILD-TYPE    108     72    161
D80V4, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         57                          108
  CLUS_2                         17                           72
  CLUS_3                         10                          161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q11) MUTATED        4      7      1      0      3      3
  DEL PEAK 29(13Q11) WILD-TYPE     37     30     38     12     38     21
D80V5, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          4                           37
  CLUS_2                          7                           30
  CLUS_3                          1                           38
  CLUS_4                          0                           12
  CLUS_5                          3                           38
  CLUS_6                          3                           21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q11) MUTATED        8      5      4      1
  DEL PEAK 29(13Q11) WILD-TYPE     59     62     39     16
D80V6, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          8                           59
  CLUS_2                          5                           62
  CLUS_3                          4                           39
  CLUS_4                          1                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED        6     75     16
  DEL PEAK 29(13Q11) WILD-TYPE    145    155    133
D80V7, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          6                          145
  CLUS_2                         75                          155
  CLUS_3                         16                          133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       21     61     15
  DEL PEAK 29(13Q11) WILD-TYPE    195    108    130
D80V8, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         21                          195
  CLUS_2                         61                          108
  CLUS_3                         15                          130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       71     13     13
  DEL PEAK 29(13Q11) WILD-TYPE    155    130    148
D80V9, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         71                          155
  CLUS_2                         13                          130
  CLUS_3                         13                          148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q11) MUTATED       12      2     48     35
  DEL PEAK 29(13Q11) WILD-TYPE    129     58     75    171
D80V10, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         12                          129
  CLUS_2                          2                           58
  CLUS_3                         48                           75
  CLUS_4                         35                          171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       42     24     17
  DEL PEAK 29(13Q11) WILD-TYPE    130     72    113
D80V11, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         42                          130
  CLUS_2                         24                           72
  CLUS_3                         17                          113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       38     13     32
  DEL PEAK 29(13Q11) WILD-TYPE    106    102    107
D80V12, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         38                          106
  CLUS_2                         13                          102
  CLUS_3                         32                          107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = DEL PEAK 30(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q14.2) MUTATED        1      3      1      0
  DEL PEAK 30(13Q14.2) WILD-TYPE     13     14     11     10
D81V1, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(13Q14.2) MUTATED        4      1      0      0      0
  DEL PEAK 30(13Q14.2) WILD-TYPE     10      8      7      7     16
D81V2, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            1                              8
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(13Q14.2) MUTATED       86      5      8      3      5
  DEL PEAK 30(13Q14.2) WILD-TYPE     83    300     11      6     32
D81V3, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           86                             83
  CLUS_2                            5                            300
  CLUS_3                            8                             11
  CLUS_4                            3                              6
  CLUS_5                            5                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       60     20     14
  DEL PEAK 30(13Q14.2) WILD-TYPE    105     69    157
D81V4, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           60                            105
  CLUS_2                           20                             69
  CLUS_3                           14                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(13Q14.2) MUTATED        5      9      1      1      3      3
  DEL PEAK 30(13Q14.2) WILD-TYPE     36     28     38     11     38     21
D81V5, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            9                             28
  CLUS_3                            1                             38
  CLUS_4                            1                             11
  CLUS_5                            3                             38
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q14.2) MUTATED       10      6      5      1
  DEL PEAK 30(13Q14.2) WILD-TYPE     57     61     38     16
D81V6, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                            6                             61
  CLUS_3                            5                             38
  CLUS_4                            1                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED        7     78     19
  DEL PEAK 30(13Q14.2) WILD-TYPE    144    152    130
D81V7, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            7                            144
  CLUS_2                           78                            152
  CLUS_3                           19                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       26     60     18
  DEL PEAK 30(13Q14.2) WILD-TYPE    190    109    127
D81V8, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           26                            190
  CLUS_2                           60                            109
  CLUS_3                           18                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       72     17     17
  DEL PEAK 30(13Q14.2) WILD-TYPE    154    126    144
D81V9, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           72                            154
  CLUS_2                           17                            126
  CLUS_3                           17                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q14.2) MUTATED       15      4     47     40
  DEL PEAK 30(13Q14.2) WILD-TYPE    126     56     76    166
D81V10, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           15                            126
  CLUS_2                            4                             56
  CLUS_3                           47                             76
  CLUS_4                           40                            166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       49     25     20
  DEL PEAK 30(13Q14.2) WILD-TYPE    123     71    110
D81V11, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           49                            123
  CLUS_2                           25                             71
  CLUS_3                           20                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       47     17     30
  DEL PEAK 30(13Q14.2) WILD-TYPE     97     98    109
D81V12, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           47                             97
  CLUS_2                           17                             98
  CLUS_3                           30                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = DEL PEAK 31(14Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q13.1) MUTATED        0      5      0      0
  DEL PEAK 31(14Q13.1) WILD-TYPE     14     12     12     10
D82V1, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            5                             12
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(14Q13.1) MUTATED        1      4      0      0      0
  DEL PEAK 31(14Q13.1) WILD-TYPE     13      5      7      7     16
D82V2, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(14Q13.1) MUTATED       63      2      2      3      3
  DEL PEAK 31(14Q13.1) WILD-TYPE    106    303     17      6     34
D82V3, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           63                            106
  CLUS_2                            2                            303
  CLUS_3                            2                             17
  CLUS_4                            3                              6
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       51      8      5
  DEL PEAK 31(14Q13.1) WILD-TYPE    114     81    166
D82V4, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           51                            114
  CLUS_2                            8                             81
  CLUS_3                            5                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(14Q13.1) MUTATED        2      5      0      0      1      3
  DEL PEAK 31(14Q13.1) WILD-TYPE     39     32     39     12     40     21
D82V5, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            2                             39
  CLUS_2                            5                             32
  CLUS_3                            0                             39
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q13.1) MUTATED        4      3      1      3
  DEL PEAK 31(14Q13.1) WILD-TYPE     63     64     42     14
D82V6, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            4                             63
  CLUS_2                            3                             64
  CLUS_3                            1                             42
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED        4     61      6
  DEL PEAK 31(14Q13.1) WILD-TYPE    147    169    143
D82V7, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            4                            147
  CLUS_2                           61                            169
  CLUS_3                            6                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       11     54      6
  DEL PEAK 31(14Q13.1) WILD-TYPE    205    115    139
D82V8, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           11                            205
  CLUS_2                           54                            115
  CLUS_3                            6                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       58     10      4
  DEL PEAK 31(14Q13.1) WILD-TYPE    168    133    157
D82V9, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           58                            168
  CLUS_2                           10                            133
  CLUS_3                            4                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q13.1) MUTATED        4      1     44     23
  DEL PEAK 31(14Q13.1) WILD-TYPE    137     59     79    183
D82V10, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            4                            137
  CLUS_2                            1                             59
  CLUS_3                           44                             79
  CLUS_4                           23                            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       37     18      9
  DEL PEAK 31(14Q13.1) WILD-TYPE    135     78    121
D82V11, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           37                            135
  CLUS_2                           18                             78
  CLUS_3                            9                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       38      5     21
  DEL PEAK 31(14Q13.1) WILD-TYPE    106    110    118
D82V12, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           38                            106
  CLUS_2                            5                            110
  CLUS_3                           21                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = DEL PEAK 32(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q15.1) MUTATED        1      5      0      0
  DEL PEAK 32(15Q15.1) WILD-TYPE     13     12     12     10
D83V1, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            5                             12
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q15.1) MUTATED        1      4      0      1      0
  DEL PEAK 32(15Q15.1) WILD-TYPE     13      5      7      6     16
D83V2, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            1                              6
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q15.1) MUTATED      119      5      8      5      3
  DEL PEAK 32(15Q15.1) WILD-TYPE     50    300     11      4     34
D83V3, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                          119                             50
  CLUS_2                            5                            300
  CLUS_3                            8                             11
  CLUS_4                            5                              4
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       90     23     12
  DEL PEAK 32(15Q15.1) WILD-TYPE     75     66    159
D83V4, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           90                             75
  CLUS_2                           23                             66
  CLUS_3                           12                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q15.1) MUTATED        4     12      2      2      2      6
  DEL PEAK 32(15Q15.1) WILD-TYPE     37     25     37     10     39     18
D83V5, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                           12                             25
  CLUS_3                            2                             37
  CLUS_4                            2                             10
  CLUS_5                            2                             39
  CLUS_6                            6                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q15.1) MUTATED       12      6      6      4
  DEL PEAK 32(15Q15.1) WILD-TYPE     55     61     37     13
D83V6, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           12                             55
  CLUS_2                            6                             61
  CLUS_3                            6                             37
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED        9    119     12
  DEL PEAK 32(15Q15.1) WILD-TYPE    142    111    137
D83V7, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            9                            142
  CLUS_2                          119                            111
  CLUS_3                           12                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       29     99     12
  DEL PEAK 32(15Q15.1) WILD-TYPE    187     70    133
D83V8, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           29                            187
  CLUS_2                           99                             70
  CLUS_3                           12                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED      112     14     12
  DEL PEAK 32(15Q15.1) WILD-TYPE    114    129    149
D83V9, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                          112                            114
  CLUS_2                           14                            129
  CLUS_3                           12                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q15.1) MUTATED       11      2     79     46
  DEL PEAK 32(15Q15.1) WILD-TYPE    130     58     44    160
D83V10, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           11                            130
  CLUS_2                            2                             58
  CLUS_3                           79                             44
  CLUS_4                           46                            160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       70     34     18
  DEL PEAK 32(15Q15.1) WILD-TYPE    102     62    112
D83V11, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           70                            102
  CLUS_2                           34                             62
  CLUS_3                           18                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       67     12     43
  DEL PEAK 32(15Q15.1) WILD-TYPE     77    103     96
D83V12, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           67                             77
  CLUS_2                           12                            103
  CLUS_3                           43                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = DEL PEAK 33(15Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q23) MUTATED        0      6      0      0
  DEL PEAK 33(15Q23) WILD-TYPE     14     11     12     10
D84V1, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          6                           11
  CLUS_3                          0                           12
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(15Q23) MUTATED        1      5      0      0      0
  DEL PEAK 33(15Q23) WILD-TYPE     13      4      7      7     16
D84V2, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          5                            4
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(15Q23) MUTATED       95      4      7      6      3
  DEL PEAK 33(15Q23) WILD-TYPE     74    301     12      3     34
D84V3, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         95                           74
  CLUS_2                          4                          301
  CLUS_3                          7                           12
  CLUS_4                          6                            3
  CLUS_5                          3                           34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       77     16      8
  DEL PEAK 33(15Q23) WILD-TYPE     88     73    163
D84V4, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         77                           88
  CLUS_2                         16                           73
  CLUS_3                          8                          163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(15Q23) MUTATED        2      8      3      1      2      4
  DEL PEAK 33(15Q23) WILD-TYPE     39     29     36     11     39     20
D84V5, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          2                           39
  CLUS_2                          8                           29
  CLUS_3                          3                           36
  CLUS_4                          1                           11
  CLUS_5                          2                           39
  CLUS_6                          4                           20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q23) MUTATED        6      7      4      3
  DEL PEAK 33(15Q23) WILD-TYPE     61     60     39     14
D84V6, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          6                           61
  CLUS_2                          7                           60
  CLUS_3                          4                           39
  CLUS_4                          3                           14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED        8     97      9
  DEL PEAK 33(15Q23) WILD-TYPE    143    133    140
D84V7, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          8                          143
  CLUS_2                         97                          133
  CLUS_3                          9                          140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       21     85      8
  DEL PEAK 33(15Q23) WILD-TYPE    195     84    137
D84V8, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         21                          195
  CLUS_2                         85                           84
  CLUS_3                          8                          137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       90     14      9
  DEL PEAK 33(15Q23) WILD-TYPE    136    129    152
D84V9, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         90                          136
  CLUS_2                         14                          129
  CLUS_3                          9                          152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q23) MUTATED        8      2     65     38
  DEL PEAK 33(15Q23) WILD-TYPE    133     58     58    168
D84V10, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          8                          133
  CLUS_2                          2                           58
  CLUS_3                         65                           58
  CLUS_4                         38                          168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       64     22     12
  DEL PEAK 33(15Q23) WILD-TYPE    108     74    118
D84V11, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         64                          108
  CLUS_2                         22                           74
  CLUS_3                         12                          118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       59      7     32
  DEL PEAK 33(15Q23) WILD-TYPE     85    108    107
D84V12, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         59                           85
  CLUS_2                          7                          108
  CLUS_3                         32                          107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(85) Variable = DEL PEAK 34(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED        1      6      0      0
  DEL PEAK 34(16P13.3) WILD-TYPE     13     11     12     10
D85V1, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16P13.3) MUTATED        3      4      0      0      0
  DEL PEAK 34(16P13.3) WILD-TYPE     11      5      7      7     16
D85V2, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16P13.3) MUTATED       84      2      3      1      2
  DEL PEAK 34(16P13.3) WILD-TYPE     85    303     16      8     35
D85V3, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           84                             85
  CLUS_2                            2                            303
  CLUS_3                            3                             16
  CLUS_4                            1                              8
  CLUS_5                            2                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       62     17      4
  DEL PEAK 34(16P13.3) WILD-TYPE    103     72    167
D85V4, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           62                            103
  CLUS_2                           17                             72
  CLUS_3                            4                            167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(16P13.3) MUTATED        4      7      1      0      1      3
  DEL PEAK 34(16P13.3) WILD-TYPE     37     30     38     12     40     21
D85V5, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            7                             30
  CLUS_3                            1                             38
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED        9      2      2      3
  DEL PEAK 34(16P13.3) WILD-TYPE     58     65     41     14
D85V6, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            2                             65
  CLUS_3                            2                             41
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED        2     82      7
  DEL PEAK 34(16P13.3) WILD-TYPE    149    148    142
D85V7, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            2                            149
  CLUS_2                           82                            148
  CLUS_3                            7                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       13     71      7
  DEL PEAK 34(16P13.3) WILD-TYPE    203     98    138
D85V8, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           13                            203
  CLUS_2                           71                             98
  CLUS_3                            7                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       76      7      7
  DEL PEAK 34(16P13.3) WILD-TYPE    150    136    154
D85V9, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           76                            150
  CLUS_2                            7                            136
  CLUS_3                            7                            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED        5      1     59     25
  DEL PEAK 34(16P13.3) WILD-TYPE    136     59     64    181
D85V10, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            5                            136
  CLUS_2                            1                             59
  CLUS_3                           59                             64
  CLUS_4                           25                            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       51     21     10
  DEL PEAK 34(16P13.3) WILD-TYPE    121     75    120
D85V11, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           51                            121
  CLUS_2                           21                             75
  CLUS_3                           10                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       49      6     27
  DEL PEAK 34(16P13.3) WILD-TYPE     95    109    112
D85V12, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           49                             95
  CLUS_2                            6                            109
  CLUS_3                           27                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(86) Variable = DEL PEAK 35(16Q21) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q21) MUTATED        0      8      1      0
  DEL PEAK 35(16Q21) WILD-TYPE     14      9     11     10
D86V1, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          8                            9
  CLUS_3                          1                           11
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(16Q21) MUTATED        1      7      0      0      1
  DEL PEAK 35(16Q21) WILD-TYPE     13      2      7      7     15
D86V2, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          7                            2
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          1                           15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(16Q21) MUTATED      128     14      7      1      4
  DEL PEAK 35(16Q21) WILD-TYPE     41    291     12      8     33
D86V3, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                        128                           41
  CLUS_2                         14                          291
  CLUS_3                          7                           12
  CLUS_4                          1                            8
  CLUS_5                          4                           33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED       93     26     16
  DEL PEAK 35(16Q21) WILD-TYPE     72     63    155
D86V4, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         93                           72
  CLUS_2                         26                           63
  CLUS_3                         16                          155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(16Q21) MUTATED        6     11      3      1      6      7
  DEL PEAK 35(16Q21) WILD-TYPE     35     26     36     11     35     17
D86V5, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                          6                           35
  CLUS_2                         11                           26
  CLUS_3                          3                           36
  CLUS_4                          1                           11
  CLUS_5                          6                           35
  CLUS_6                          7                           17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q21) MUTATED       12     11      6      5
  DEL PEAK 35(16Q21) WILD-TYPE     55     56     37     12
D86V6, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         12                           55
  CLUS_2                         11                           56
  CLUS_3                          6                           37
  CLUS_4                          5                           12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED       14    123     16
  DEL PEAK 35(16Q21) WILD-TYPE    137    107    133
D86V7, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         14                          137
  CLUS_2                        123                          107
  CLUS_3                         16                          133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED       33    105     15
  DEL PEAK 35(16Q21) WILD-TYPE    183     64    130
D86V8, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         33                          183
  CLUS_2                        105                           64
  CLUS_3                         15                          130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED      111     22     17
  DEL PEAK 35(16Q21) WILD-TYPE    115    121    144
D86V9, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                        111                          115
  CLUS_2                         22                          121
  CLUS_3                         17                          144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q21) MUTATED       16      7     82     45
  DEL PEAK 35(16Q21) WILD-TYPE    125     53     41    161
D86V10, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         16                          125
  CLUS_2                          7                           53
  CLUS_3                         82                           41
  CLUS_4                         45                          161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED       78     31     22
  DEL PEAK 35(16Q21) WILD-TYPE     94     65    108
D86V11, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         78                           94
  CLUS_2                         31                           65
  CLUS_3                         22                          108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED       72     16     43
  DEL PEAK 35(16Q21) WILD-TYPE     72     99     96
D86V12, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         72                           72
  CLUS_2                         16                           99
  CLUS_3                         43                           96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = DEL PEAK 36(16Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q22.3) MUTATED        1      7      2      0
  DEL PEAK 36(16Q22.3) WILD-TYPE     13     10     10     10
D87V1, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            7                             10
  CLUS_3                            2                             10
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(16Q22.3) MUTATED        4      5      0      0      1
  DEL PEAK 36(16Q22.3) WILD-TYPE     10      4      7      7     15
D87V2, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              4
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(16Q22.3) MUTATED      129     17      7      1      4
  DEL PEAK 36(16Q22.3) WILD-TYPE     40    288     12      8     33
D87V3, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                          129                             40
  CLUS_2                           17                            288
  CLUS_3                            7                             12
  CLUS_4                            1                              8
  CLUS_5                            4                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q22.3) MUTATED       91     28     19
  DEL PEAK 36(16Q22.3) WILD-TYPE     74     61    152
D87V4, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                           91                             74
  CLUS_2                           28                             61
  CLUS_3                           19                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(16Q22.3) MUTATED        8     14      4      2      6      4
  DEL PEAK 36(16Q22.3) WILD-TYPE     33     23     35     10     35     20
D87V5, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                            8                             33
  CLUS_2                           14                             23
  CLUS_3                            4                             35
  CLUS_4                            2                             10
  CLUS_5                            6                             35
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q22.3) MUTATED       15     13      8      2
  DEL PEAK 36(16Q22.3) WILD-TYPE     52     54     35     15
D87V6, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                           15                             52
  CLUS_2                           13                             54
  CLUS_3                            8                             35
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q22.3) MUTATED       15    125     18
  DEL PEAK 36(16Q22.3) WILD-TYPE    136    105    131
D87V7, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                           15                            136
  CLUS_2                          125                            105
  CLUS_3                           18                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q22.3) MUTATED       36    105     17
  DEL PEAK 36(16Q22.3) WILD-TYPE    180     64    128
D87V8, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                           36                            180
  CLUS_2                          105                             64
  CLUS_3                           17                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q22.3) MUTATED      112     23     19
  DEL PEAK 36(16Q22.3) WILD-TYPE    114    120    142
D87V9, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                          112                            114
  CLUS_2                           23                            120
  CLUS_3                           19                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q22.3) MUTATED       18      7     84     45
  DEL PEAK 36(16Q22.3) WILD-TYPE    123     53     39    161
D87V10, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                           18                            123
  CLUS_2                            7                             53
  CLUS_3                           84                             39
  CLUS_4                           45                            161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q22.3) MUTATED       75     34     25
  DEL PEAK 36(16Q22.3) WILD-TYPE     97     62    105
D87V11, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                           75                             97
  CLUS_2                           34                             62
  CLUS_3                           25                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q22.3) MUTATED       68     16     50
  DEL PEAK 36(16Q22.3) WILD-TYPE     76     99     89
D87V12, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                           68                             76
  CLUS_2                           16                             99
  CLUS_3                           50                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = DEL PEAK 37(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED        1      9      2      0
  DEL PEAK 37(16Q23.1) WILD-TYPE     13      8     10     10
D88V1, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            9                              8
  CLUS_3                            2                             10
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(16Q23.1) MUTATED        4      7      0      0      1
  DEL PEAK 37(16Q23.1) WILD-TYPE     10      2      7      7     15
D88V2, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            7                              2
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(16Q23.1) MUTATED      134     19      8      1      4
  DEL PEAK 37(16Q23.1) WILD-TYPE     35    286     11      8     33
D88V3, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                          134                             35
  CLUS_2                           19                            286
  CLUS_3                            8                             11
  CLUS_4                            1                              8
  CLUS_5                            4                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       96     27     19
  DEL PEAK 37(16Q23.1) WILD-TYPE     69     62    152
D88V4, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           96                             69
  CLUS_2                           27                             62
  CLUS_3                           19                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(16Q23.1) MUTATED        8     15      4      2      6      6
  DEL PEAK 37(16Q23.1) WILD-TYPE     33     22     35     10     35     18
D88V5, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                            8                             33
  CLUS_2                           15                             22
  CLUS_3                            4                             35
  CLUS_4                            2                             10
  CLUS_5                            6                             35
  CLUS_6                            6                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED       16     13      8      4
  DEL PEAK 37(16Q23.1) WILD-TYPE     51     54     35     13
D88V6, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           16                             51
  CLUS_2                           13                             54
  CLUS_3                            8                             35
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       16    133     17
  DEL PEAK 37(16Q23.1) WILD-TYPE    135     97    132
D88V7, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           16                            135
  CLUS_2                          133                             97
  CLUS_3                           17                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       38    112     16
  DEL PEAK 37(16Q23.1) WILD-TYPE    178     57    129
D88V8, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           38                            178
  CLUS_2                          112                             57
  CLUS_3                           16                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED      120     23     18
  DEL PEAK 37(16Q23.1) WILD-TYPE    106    120    143
D88V9, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                          120                            106
  CLUS_2                           23                            120
  CLUS_3                           18                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED       16      7     92     46
  DEL PEAK 37(16Q23.1) WILD-TYPE    125     53     31    160
D88V10, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           16                            125
  CLUS_2                            7                             53
  CLUS_3                           92                             31
  CLUS_4                           46                            160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       80     35     23
  DEL PEAK 37(16Q23.1) WILD-TYPE     92     61    107
D88V11, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           80                             92
  CLUS_2                           35                             61
  CLUS_3                           23                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       72     15     51
  DEL PEAK 37(16Q23.1) WILD-TYPE     72    100     88
D88V12, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           72                             72
  CLUS_2                           15                            100
  CLUS_3                           51                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(89) Variable = DEL PEAK 38(17P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P13.3) MUTATED        0      8      1      0
  DEL PEAK 38(17P13.3) WILD-TYPE     14      9     11     10
D89V1, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            8                              9
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(17P13.3) MUTATED        1      7      1      0      0
  DEL PEAK 38(17P13.3) WILD-TYPE     13      2      6      7     16
D89V2, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            7                              2
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(17P13.3) MUTATED      109      4      5      1      3
  DEL PEAK 38(17P13.3) WILD-TYPE     60    301     14      8     34
D89V3, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                          109                             60
  CLUS_2                            4                            301
  CLUS_3                            5                             14
  CLUS_4                            1                              8
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P13.3) MUTATED       71     20     13
  DEL PEAK 38(17P13.3) WILD-TYPE     94     69    158
D89V4, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                           71                             94
  CLUS_2                           20                             69
  CLUS_3                           13                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(17P13.3) MUTATED        3     10      3      0      2      8
  DEL PEAK 38(17P13.3) WILD-TYPE     38     27     36     12     39     16
D89V5, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                           10                             27
  CLUS_3                            3                             36
  CLUS_4                            0                             12
  CLUS_5                            2                             39
  CLUS_6                            8                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P13.3) MUTATED       10      8      4      4
  DEL PEAK 38(17P13.3) WILD-TYPE     57     59     39     13
D89V6, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                            8                             59
  CLUS_3                            4                             39
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P13.3) MUTATED        6     98     15
  DEL PEAK 38(17P13.3) WILD-TYPE    145    132    134
D89V7, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                            6                            145
  CLUS_2                           98                            132
  CLUS_3                           15                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P13.3) MUTATED       19     84     16
  DEL PEAK 38(17P13.3) WILD-TYPE    197     85    129
D89V8, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                           19                            197
  CLUS_2                           84                             85
  CLUS_3                           16                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P13.3) MUTATED       91     13     15
  DEL PEAK 38(17P13.3) WILD-TYPE    135    130    146
D89V9, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                           91                            135
  CLUS_2                           13                            130
  CLUS_3                           15                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P13.3) MUTATED       15      2     65     37
  DEL PEAK 38(17P13.3) WILD-TYPE    126     58     58    169
D89V10, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                           15                            126
  CLUS_2                            2                             58
  CLUS_3                           65                             58
  CLUS_4                           37                            169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P13.3) MUTATED       60     26     14
  DEL PEAK 38(17P13.3) WILD-TYPE    112     70    116
D89V11, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                           60                            112
  CLUS_2                           26                             70
  CLUS_3                           14                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P13.3) MUTATED       53     15     32
  DEL PEAK 38(17P13.3) WILD-TYPE     91    100    107
D89V12, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                           53                             91
  CLUS_2                           15                            100
  CLUS_3                           32                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(90) Variable = DEL PEAK 39(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P11.2) MUTATED        0      8      1      0
  DEL PEAK 39(17P11.2) WILD-TYPE     14      9     11     10
D90V1, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            8                              9
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(17P11.2) MUTATED        0      8      1      0      0
  DEL PEAK 39(17P11.2) WILD-TYPE     14      1      6      7     16
D90V2, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            8                              1
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(17P11.2) MUTATED      116      4      4      1      3
  DEL PEAK 39(17P11.2) WILD-TYPE     53    301     15      8     34
D90V3, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                          116                             53
  CLUS_2                            4                            301
  CLUS_3                            4                             15
  CLUS_4                            1                              8
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       79     21     12
  DEL PEAK 39(17P11.2) WILD-TYPE     86     68    159
D90V4, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           79                             86
  CLUS_2                           21                             68
  CLUS_3                           12                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(17P11.2) MUTATED        6      8      3      0      1      8
  DEL PEAK 39(17P11.2) WILD-TYPE     35     29     36     12     40     16
D90V5, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            8                             29
  CLUS_3                            3                             36
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            8                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P11.2) MUTATED       10      8      3      5
  DEL PEAK 39(17P11.2) WILD-TYPE     57     59     40     12
D90V6, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                            8                             59
  CLUS_3                            3                             40
  CLUS_4                            5                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED        4    108     14
  DEL PEAK 39(17P11.2) WILD-TYPE    147    122    135
D90V7, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            4                            147
  CLUS_2                          108                            122
  CLUS_3                           14                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       18     93     15
  DEL PEAK 39(17P11.2) WILD-TYPE    198     76    130
D90V8, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           18                            198
  CLUS_2                           93                             76
  CLUS_3                           15                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       97     11     16
  DEL PEAK 39(17P11.2) WILD-TYPE    129    132    145
D90V9, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           97                            129
  CLUS_2                           11                            132
  CLUS_3                           16                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P11.2) MUTATED       15      1     72     36
  DEL PEAK 39(17P11.2) WILD-TYPE    126     59     51    170
D90V10, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           15                            126
  CLUS_2                            1                             59
  CLUS_3                           72                             51
  CLUS_4                           36                            170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       63     29     15
  DEL PEAK 39(17P11.2) WILD-TYPE    109     67    115
D90V11, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           63                            109
  CLUS_2                           29                             67
  CLUS_3                           15                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       57     15     35
  DEL PEAK 39(17P11.2) WILD-TYPE     87    100    104
D90V12, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           57                             87
  CLUS_2                           15                            100
  CLUS_3                           35                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(91) Variable = DEL PEAK 40(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED        0      7      0      0
  DEL PEAK 40(17Q11.2) WILD-TYPE     14     10     12     10
D91V1, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            7                             10
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17Q11.2) MUTATED        0      7      0      0      0
  DEL PEAK 40(17Q11.2) WILD-TYPE     14      2      7      7     16
D91V2, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            7                              2
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17Q11.2) MUTATED       93      2      5      1      4
  DEL PEAK 40(17Q11.2) WILD-TYPE     76    303     14      8     33
D91V3, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           93                             76
  CLUS_2                            2                            303
  CLUS_3                            5                             14
  CLUS_4                            1                              8
  CLUS_5                            4                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       58     18     14
  DEL PEAK 40(17Q11.2) WILD-TYPE    107     71    157
D91V4, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           58                            107
  CLUS_2                           18                             71
  CLUS_3                           14                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(17Q11.2) MUTATED        3      9      3      0      2      6
  DEL PEAK 40(17Q11.2) WILD-TYPE     38     28     36     12     39     18
D91V5, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            9                             28
  CLUS_3                            3                             36
  CLUS_4                            0                             12
  CLUS_5                            2                             39
  CLUS_6                            6                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED        8      8      4      3
  DEL PEAK 40(17Q11.2) WILD-TYPE     59     59     39     14
D91V6, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                            8                             59
  CLUS_3                            4                             39
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED        6     83     14
  DEL PEAK 40(17Q11.2) WILD-TYPE    145    147    135
D91V7, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            6                            145
  CLUS_2                           83                            147
  CLUS_3                           14                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       22     66     15
  DEL PEAK 40(17Q11.2) WILD-TYPE    194    103    130
D91V8, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           22                            194
  CLUS_2                           66                            103
  CLUS_3                           15                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       75     10     16
  DEL PEAK 40(17Q11.2) WILD-TYPE    151    133    145
D91V9, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           75                            151
  CLUS_2                           10                            133
  CLUS_3                           16                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED       15      2     50     34
  DEL PEAK 40(17Q11.2) WILD-TYPE    126     58     73    172
D91V10, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           15                            126
  CLUS_2                            2                             58
  CLUS_3                           50                             73
  CLUS_4                           34                            172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       50     21     17
  DEL PEAK 40(17Q11.2) WILD-TYPE    122     75    113
D91V11, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           50                            122
  CLUS_2                           21                             75
  CLUS_3                           17                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       44     15     29
  DEL PEAK 40(17Q11.2) WILD-TYPE    100    100    110
D91V12, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           44                            100
  CLUS_2                           15                            100
  CLUS_3                           29                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(92) Variable = DEL PEAK 41(17Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q21.31) MUTATED        0      9      0      0
  DEL PEAK 41(17Q21.31) WILD-TYPE     14      8     12     10
D92V1, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                             0                              14
  CLUS_2                             9                               8
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17Q21.31) MUTATED        1      8      0      0      0
  DEL PEAK 41(17Q21.31) WILD-TYPE     13      1      7      7     16
D92V2, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             8                               1
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17Q21.31) MUTATED      104      1      4      1      4
  DEL PEAK 41(17Q21.31) WILD-TYPE     65    304     15      8     33
D92V3, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                           104                              65
  CLUS_2                             1                             304
  CLUS_3                             4                              15
  CLUS_4                             1                               8
  CLUS_5                             4                              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       64     22     13
  DEL PEAK 41(17Q21.31) WILD-TYPE    101     67    158
D92V4, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            64                             101
  CLUS_2                            22                              67
  CLUS_3                            13                             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(17Q21.31) MUTATED        4     10      3      0      1      6
  DEL PEAK 41(17Q21.31) WILD-TYPE     37     27     36     12     40     18
D92V5, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                             4                              37
  CLUS_2                            10                              27
  CLUS_3                             3                              36
  CLUS_4                             0                              12
  CLUS_5                             1                              40
  CLUS_6                             6                              18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q21.31) MUTATED       11      7      3      3
  DEL PEAK 41(17Q21.31) WILD-TYPE     56     60     40     14
D92V6, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            11                              56
  CLUS_2                             7                              60
  CLUS_3                             3                              40
  CLUS_4                             3                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED        5     91     15
  DEL PEAK 41(17Q21.31) WILD-TYPE    146    139    134
D92V7, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                             5                             146
  CLUS_2                            91                             139
  CLUS_3                            15                             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       20     76     15
  DEL PEAK 41(17Q21.31) WILD-TYPE    196     93    130
D92V8, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            20                             196
  CLUS_2                            76                              93
  CLUS_3                            15                             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       80     12     17
  DEL PEAK 41(17Q21.31) WILD-TYPE    146    131    144
D92V9, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            80                             146
  CLUS_2                            12                             131
  CLUS_3                            17                             144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q21.31) MUTATED       17      1     58     33
  DEL PEAK 41(17Q21.31) WILD-TYPE    124     59     65    173
D92V10, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            17                             124
  CLUS_2                             1                              59
  CLUS_3                            58                              65
  CLUS_4                            33                             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       58     21     17
  DEL PEAK 41(17Q21.31) WILD-TYPE    114     75    113
D92V11, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            58                             114
  CLUS_2                            21                              75
  CLUS_3                            17                             113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       49     17     30
  DEL PEAK 41(17Q21.31) WILD-TYPE     95     98    109
D92V12, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            49                              95
  CLUS_2                            17                              98
  CLUS_3                            30                             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(93) Variable = DEL PEAK 42(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED        1      3      1      0
  DEL PEAK 42(18Q21.2) WILD-TYPE     13     14     11     10
D93V1, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(18Q21.2) MUTATED        2      2      1      0      0
  DEL PEAK 42(18Q21.2) WILD-TYPE     12      7      6      7     16
D93V2, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(18Q21.2) MUTATED       74      2      8      4      3
  DEL PEAK 42(18Q21.2) WILD-TYPE     95    303     11      5     34
D93V3, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           74                             95
  CLUS_2                            2                            303
  CLUS_3                            8                             11
  CLUS_4                            4                              5
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       57     14     10
  DEL PEAK 42(18Q21.2) WILD-TYPE    108     75    161
D93V4, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           57                            108
  CLUS_2                           14                             75
  CLUS_3                           10                            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(18Q21.2) MUTATED        6      7      1      1      1      4
  DEL PEAK 42(18Q21.2) WILD-TYPE     35     30     38     11     40     20
D93V5, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            7                             30
  CLUS_3                            1                             38
  CLUS_4                            1                             11
  CLUS_5                            1                             40
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED        9      6      3      2
  DEL PEAK 42(18Q21.2) WILD-TYPE     58     61     40     15
D93V6, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            6                             61
  CLUS_3                            3                             40
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED        5     75     11
  DEL PEAK 42(18Q21.2) WILD-TYPE    146    155    138
D93V7, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            5                            146
  CLUS_2                           75                            155
  CLUS_3                           11                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       25     56     10
  DEL PEAK 42(18Q21.2) WILD-TYPE    191    113    135
D93V8, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           25                            191
  CLUS_2                           56                            113
  CLUS_3                           10                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       72      7     11
  DEL PEAK 42(18Q21.2) WILD-TYPE    154    136    150
D93V9, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           72                            154
  CLUS_2                            7                            136
  CLUS_3                           11                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED        8      1     48     33
  DEL PEAK 42(18Q21.2) WILD-TYPE    133     59     75    173
D93V10, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            8                            133
  CLUS_2                            1                             59
  CLUS_3                           48                             75
  CLUS_4                           33                            173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       46     19     14
  DEL PEAK 42(18Q21.2) WILD-TYPE    126     77    116
D93V11, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           46                            126
  CLUS_2                           19                             77
  CLUS_3                           14                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       44     10     25
  DEL PEAK 42(18Q21.2) WILD-TYPE    100    105    114
D93V12, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           44                            100
  CLUS_2                           10                            105
  CLUS_3                           25                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(94) Variable = DEL PEAK 43(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q23) MUTATED        1      3      1      0
  DEL PEAK 43(18Q23) WILD-TYPE     13     14     11     10
D94V1, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          3                           14
  CLUS_3                          1                           11
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q23) MUTATED        2      2      1      0      0
  DEL PEAK 43(18Q23) WILD-TYPE     12      7      6      7     16
D94V2, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          2                            7
  CLUS_3                          1                            6
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q23) MUTATED       80      2      9      3      4
  DEL PEAK 43(18Q23) WILD-TYPE     89    303     10      6     33
D94V3, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         80                           89
  CLUS_2                          2                          303
  CLUS_3                          9                           10
  CLUS_4                          3                            6
  CLUS_5                          4                           33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       62     14     10
  DEL PEAK 43(18Q23) WILD-TYPE    103     75    161
D94V4, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         62                          103
  CLUS_2                         14                           75
  CLUS_3                         10                          161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q23) MUTATED        6      9      1      1      2      3
  DEL PEAK 43(18Q23) WILD-TYPE     35     28     38     11     39     21
D94V5, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          6                           35
  CLUS_2                          9                           28
  CLUS_3                          1                           38
  CLUS_4                          1                           11
  CLUS_5                          2                           39
  CLUS_6                          3                           21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q23) MUTATED        9      8      4      1
  DEL PEAK 43(18Q23) WILD-TYPE     58     59     39     16
D94V6, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          9                           58
  CLUS_2                          8                           59
  CLUS_3                          4                           39
  CLUS_4                          1                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED        5     81     11
  DEL PEAK 43(18Q23) WILD-TYPE    146    149    138
D94V7, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          5                          146
  CLUS_2                         81                          149
  CLUS_3                         11                          138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       23     63     11
  DEL PEAK 43(18Q23) WILD-TYPE    193    106    134
D94V8, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         23                          193
  CLUS_2                         63                          106
  CLUS_3                         11                          134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       75      9     12
  DEL PEAK 43(18Q23) WILD-TYPE    151    134    149
D94V9, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         75                          151
  CLUS_2                          9                          134
  CLUS_3                         12                          149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q23) MUTATED       10      2     54     30
  DEL PEAK 43(18Q23) WILD-TYPE    131     58     69    176
D94V10, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         10                          131
  CLUS_2                          2                           58
  CLUS_3                         54                           69
  CLUS_4                         30                          176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       49     22     13
  DEL PEAK 43(18Q23) WILD-TYPE    123     74    117
D94V11, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         49                          123
  CLUS_2                         22                           74
  CLUS_3                         13                          117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       44     11     29
  DEL PEAK 43(18Q23) WILD-TYPE    100    104    110
D94V12, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         44                          100
  CLUS_2                         11                          104
  CLUS_3                         29                          110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(95) Variable = DEL PEAK 44(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED        0     11      0      0
  DEL PEAK 44(19P13.3) WILD-TYPE     14      6     12     10
D95V1, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                           11                              6
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(19P13.3) MUTATED        2      9      0      0      0
  DEL PEAK 44(19P13.3) WILD-TYPE     12      0      7      7     16
D95V2, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            9                              0
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(19P13.3) MUTATED      145      0      5      3      1
  DEL PEAK 44(19P13.3) WILD-TYPE     24    305     14      6     36
D95V3, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                          145                             24
  CLUS_2                            0                            305
  CLUS_3                            5                             14
  CLUS_4                            3                              6
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED      108     23      5
  DEL PEAK 44(19P13.3) WILD-TYPE     57     66    166
D95V4, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                          108                             57
  CLUS_2                           23                             66
  CLUS_3                            5                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(19P13.3) MUTATED        7     14      2      0      1      7
  DEL PEAK 44(19P13.3) WILD-TYPE     34     23     37     12     40     17
D95V5, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            7                             34
  CLUS_2                           14                             23
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            7                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       16      8      2      5
  DEL PEAK 44(19P13.3) WILD-TYPE     51     59     41     12
D95V6, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           16                             51
  CLUS_2                            8                             59
  CLUS_3                            2                             41
  CLUS_4                            5                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED        4    138      9
  DEL PEAK 44(19P13.3) WILD-TYPE    147     92    140
D95V7, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            4                            147
  CLUS_2                          138                             92
  CLUS_3                            9                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       23    120      8
  DEL PEAK 44(19P13.3) WILD-TYPE    193     49    137
D95V8, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           23                            193
  CLUS_2                          120                             49
  CLUS_3                            8                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED      130      9     10
  DEL PEAK 44(19P13.3) WILD-TYPE     96    134    151
D95V9, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                          130                             96
  CLUS_2                            9                            134
  CLUS_3                           10                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       13      1     98     37
  DEL PEAK 44(19P13.3) WILD-TYPE    128     59     25    169
D95V10, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           13                            128
  CLUS_2                            1                             59
  CLUS_3                           98                             25
  CLUS_4                           37                            169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       83     31     18
  DEL PEAK 44(19P13.3) WILD-TYPE     89     65    112
D95V11, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           83                             89
  CLUS_2                           31                             65
  CLUS_3                           18                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       78     11     43
  DEL PEAK 44(19P13.3) WILD-TYPE     66    104     96
D95V12, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           78                             66
  CLUS_2                           11                            104
  CLUS_3                           43                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(96) Variable = DEL PEAK 45(19P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P12) MUTATED        1      1      0      0
  DEL PEAK 45(19P12) WILD-TYPE     13     16     12     10
D96V1, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 45(19P12) MUTATED"
clus
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A052                   TCGA-AP-A053 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A054                   TCGA-AP-A056 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05A                   TCGA-AP-A05H 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05J                   TCGA-AP-A05N 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05P                   TCGA-AP-A0L8 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0L9                   TCGA-AP-A0LD 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LG                   TCGA-AP-A0LH 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LJ                   TCGA-AP-A0LN 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LT                   TCGA-AP-A0LV 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05S                   TCGA-AX-A05T 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05U                   TCGA-AX-A05W 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05Y                   TCGA-AX-A05Z 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A060                   TCGA-AX-A062 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A063                   TCGA-AX-A064 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A06B                   TCGA-AX-A06F 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A06J                   TCGA-AX-A0IW 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A0J1                   TCGA-B5-A0JR 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 45(19P12) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19P12) MUTATED        0      1      0      1      0
  DEL PEAK 45(19P12) WILD-TYPE     14      8      7      6     16
D96V2, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 45(19P12) MUTATED"
clus
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A052                   TCGA-AP-A053 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A054                   TCGA-AP-A056 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05A                   TCGA-AP-A05H 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05J                   TCGA-AP-A05N 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05P                   TCGA-AP-A0L8 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0L9                   TCGA-AP-A0LD 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LG                   TCGA-AP-A0LH 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LJ                   TCGA-AP-A0LN 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LT                   TCGA-AP-A0LV 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05S                   TCGA-AX-A05T 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05U                   TCGA-AX-A05W 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05Y                   TCGA-AX-A05Z 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A060                   TCGA-AX-A062 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A063                   TCGA-AX-A064 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A06B                   TCGA-AX-A06F 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A06J                   TCGA-AX-A0IW 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A0J1                   TCGA-B5-A0JR 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 45(19P12) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19P12) MUTATED       50      1      5      1      1
  DEL PEAK 45(19P12) WILD-TYPE    119    304     14      8     36
D96V3, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         50                          119
  CLUS_2                          1                          304
  CLUS_3                          5                           14
  CLUS_4                          1                            8
  CLUS_5                          1                           36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       38     10      4
  DEL PEAK 45(19P12) WILD-TYPE    127     79    167
D96V4, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         38                          127
  CLUS_2                         10                           79
  CLUS_3                          4                          167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(19P12) MUTATED        1      5      1      0      2      1
  DEL PEAK 45(19P12) WILD-TYPE     40     32     38     12     39     23
D96V5, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          1                           40
  CLUS_2                          5                           32
  CLUS_3                          1                           38
  CLUS_4                          0                           12
  CLUS_5                          2                           39
  CLUS_6                          1                           23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P12) MUTATED        4      2      4      0
  DEL PEAK 45(19P12) WILD-TYPE     63     65     39     17
D96V6, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          4                           63
  CLUS_2                          2                           65
  CLUS_3                          4                           39
  CLUS_4                          0                           17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED        5     46      6
  DEL PEAK 45(19P12) WILD-TYPE    146    184    143
D96V7, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          5                          146
  CLUS_2                         46                          184
  CLUS_3                          6                          143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       13     39      5
  DEL PEAK 45(19P12) WILD-TYPE    203    130    140
D96V8, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         13                          203
  CLUS_2                         39                          130
  CLUS_3                          5                          140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       44      8      5
  DEL PEAK 45(19P12) WILD-TYPE    182    135    156
D96V9, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         44                          182
  CLUS_2                          8                          135
  CLUS_3                          5                          156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P12) MUTATED        5      2     28     22
  DEL PEAK 45(19P12) WILD-TYPE    136     58     95    184
D96V10, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          5                          136
  CLUS_2                          2                           58
  CLUS_3                         28                           95
  CLUS_4                         22                          184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       30     10     10
  DEL PEAK 45(19P12) WILD-TYPE    142     86    120
D96V11, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         30                          142
  CLUS_2                         10                           86
  CLUS_3                         10                          120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       32      5     13
  DEL PEAK 45(19P12) WILD-TYPE    112    110    126
D96V12, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         32                          112
  CLUS_2                          5                          110
  CLUS_3                         13                          126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(97) Variable = DEL PEAK 46(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19Q13.43) MUTATED        0      8      1      0
  DEL PEAK 46(19Q13.43) WILD-TYPE     14      9     11     10
D97V1, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             0                              14
  CLUS_2                             8                               9
  CLUS_3                             1                              11
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(19Q13.43) MUTATED        1      7      1      0      0
  DEL PEAK 46(19Q13.43) WILD-TYPE     13      2      6      7     16
D97V2, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             7                               2
  CLUS_3                             1                               6
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(19Q13.43) MUTATED       61      1      3      1      1
  DEL PEAK 46(19Q13.43) WILD-TYPE    108    304     16      8     36
D97V3, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            61                             108
  CLUS_2                             1                             304
  CLUS_3                             3                              16
  CLUS_4                             1                               8
  CLUS_5                             1                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       43     11      2
  DEL PEAK 46(19Q13.43) WILD-TYPE    122     78    169
D97V4, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            43                             122
  CLUS_2                            11                              78
  CLUS_3                             2                             169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(19Q13.43) MUTATED        2      5      1      0      1      4
  DEL PEAK 46(19Q13.43) WILD-TYPE     39     32     38     12     40     20
D97V5, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             2                              39
  CLUS_2                             5                              32
  CLUS_3                             1                              38
  CLUS_4                             0                              12
  CLUS_5                             1                              40
  CLUS_6                             4                              20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19Q13.43) MUTATED        4      5      1      3
  DEL PEAK 46(19Q13.43) WILD-TYPE     63     62     42     14
D97V6, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             4                              63
  CLUS_2                             5                              62
  CLUS_3                             1                              42
  CLUS_4                             3                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED        3     58      4
  DEL PEAK 46(19Q13.43) WILD-TYPE    148    172    145
D97V7, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             3                             148
  CLUS_2                            58                             172
  CLUS_3                             4                             145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       11     51      3
  DEL PEAK 46(19Q13.43) WILD-TYPE    205    118    142
D97V8, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            11                             205
  CLUS_2                            51                             118
  CLUS_3                             3                             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       55      4      4
  DEL PEAK 46(19Q13.43) WILD-TYPE    171    139    157
D97V9, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            55                             171
  CLUS_2                             4                             139
  CLUS_3                             4                             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19Q13.43) MUTATED        3      1     39     20
  DEL PEAK 46(19Q13.43) WILD-TYPE    138     59     84    186
D97V10, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             3                             138
  CLUS_2                             1                              59
  CLUS_3                            39                              84
  CLUS_4                            20                             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       32     15      9
  DEL PEAK 46(19Q13.43) WILD-TYPE    140     81    121
D97V11, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            32                             140
  CLUS_2                            15                              81
  CLUS_3                             9                             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       29      2     25
  DEL PEAK 46(19Q13.43) WILD-TYPE    115    113    114
D97V12, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            29                             115
  CLUS_2                             2                             113
  CLUS_3                            25                             114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(98) Variable = DEL PEAK 47(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(20P12.1) MUTATED        1      1      1      0
  DEL PEAK 47(20P12.1) WILD-TYPE     13     16     11     10
D98V1, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            1                             16
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(20P12.1) MUTATED        1      1      1      0      0
  DEL PEAK 47(20P12.1) WILD-TYPE     13      8      6      7     16
D98V2, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            1                              8
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(20P12.1) MUTATED       25      6      2      1      2
  DEL PEAK 47(20P12.1) WILD-TYPE    144    299     17      8     35
D98V3, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           25                            144
  CLUS_2                            6                            299
  CLUS_3                            2                             17
  CLUS_4                            1                              8
  CLUS_5                            2                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       17      5      6
  DEL PEAK 47(20P12.1) WILD-TYPE    148     84    165
D98V4, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           17                            148
  CLUS_2                            5                             84
  CLUS_3                            6                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(20P12.1) MUTATED        1      3      1      0      1      4
  DEL PEAK 47(20P12.1) WILD-TYPE     40     34     38     12     40     20
D98V5, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            1                             40
  CLUS_2                            3                             34
  CLUS_3                            1                             38
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(20P12.1) MUTATED        3      3      2      2
  DEL PEAK 47(20P12.1) WILD-TYPE     64     64     41     15
D98V6, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            3                             64
  CLUS_2                            3                             64
  CLUS_3                            2                             41
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED        3     26      6
  DEL PEAK 47(20P12.1) WILD-TYPE    148    204    143
D98V7, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            3                            148
  CLUS_2                           26                            204
  CLUS_3                            6                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED        8     22      5
  DEL PEAK 47(20P12.1) WILD-TYPE    208    147    140
D98V8, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            8                            208
  CLUS_2                           22                            147
  CLUS_3                            5                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       26      5      4
  DEL PEAK 47(20P12.1) WILD-TYPE    200    138    157
D98V9, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           26                            200
  CLUS_2                            5                            138
  CLUS_3                            4                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(20P12.1) MUTATED        7      2     19      7
  DEL PEAK 47(20P12.1) WILD-TYPE    134     58    104    199
D98V10, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            7                            134
  CLUS_2                            2                             58
  CLUS_3                           19                            104
  CLUS_4                            7                            199
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       18      6      5
  DEL PEAK 47(20P12.1) WILD-TYPE    154     90    125
D98V11, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           18                            154
  CLUS_2                            6                             90
  CLUS_3                            5                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       15      5      9
  DEL PEAK 47(20P12.1) WILD-TYPE    129    110    130
D98V12, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           15                            129
  CLUS_2                            5                            110
  CLUS_3                            9                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(99) Variable = DEL PEAK 48(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q13.32) MUTATED        0      9      0      0
  DEL PEAK 48(22Q13.32) WILD-TYPE     14      8     12     10
D99V1, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                             0                              14
  CLUS_2                             9                               8
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(22Q13.32) MUTATED        2      7      0      0      0
  DEL PEAK 48(22Q13.32) WILD-TYPE     12      2      7      7     16
D99V2, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             7                               2
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(22Q13.32) MUTATED      122      7      4      5      3
  DEL PEAK 48(22Q13.32) WILD-TYPE     47    298     15      4     34
D99V3, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                           122                              47
  CLUS_2                             7                             298
  CLUS_3                             4                              15
  CLUS_4                             5                               4
  CLUS_5                             3                              34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED       84     23     18
  DEL PEAK 48(22Q13.32) WILD-TYPE     81     66    153
D99V4, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            84                              81
  CLUS_2                            23                              66
  CLUS_3                            18                             153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(22Q13.32) MUTATED        9     13      3      1      1      5
  DEL PEAK 48(22Q13.32) WILD-TYPE     32     24     36     11     40     19
D99V5, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                             9                              32
  CLUS_2                            13                              24
  CLUS_3                             3                              36
  CLUS_4                             1                              11
  CLUS_5                             1                              40
  CLUS_6                             5                              19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q13.32) MUTATED       15     10      3      4
  DEL PEAK 48(22Q13.32) WILD-TYPE     52     57     40     13
D99V6, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            15                              52
  CLUS_2                            10                              57
  CLUS_3                             3                              40
  CLUS_4                             4                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED        8    111     19
  DEL PEAK 48(22Q13.32) WILD-TYPE    143    119    130
D99V7, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                             8                             143
  CLUS_2                           111                             119
  CLUS_3                            19                             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED       28     91     19
  DEL PEAK 48(22Q13.32) WILD-TYPE    188     78    126
D99V8, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            28                             188
  CLUS_2                            91                              78
  CLUS_3                            19                             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED      105     12     20
  DEL PEAK 48(22Q13.32) WILD-TYPE    121    131    141
D99V9, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                           105                             121
  CLUS_2                            12                             131
  CLUS_3                            20                             141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q13.32) MUTATED       19      1     75     42
  DEL PEAK 48(22Q13.32) WILD-TYPE    122     59     48    164
D99V10, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            19                             122
  CLUS_2                             1                              59
  CLUS_3                            75                              48
  CLUS_4                            42                             164
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED       69     28     22
  DEL PEAK 48(22Q13.32) WILD-TYPE    103     68    108
D99V11, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            69                             103
  CLUS_2                            28                              68
  CLUS_3                            22                             108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED       64     19     36
  DEL PEAK 48(22Q13.32) WILD-TYPE     80     96    103
D99V12, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            64                              80
  CLUS_2                            19                              96
  CLUS_3                            36                             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(100) Variable = DEL PEAK 49(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(XP21.1) MUTATED        0      7      0      0
  DEL PEAK 49(XP21.1) WILD-TYPE     14     10     12     10
D100V1, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           7                            10
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(XP21.1) MUTATED        2      5      0      0      0
  DEL PEAK 49(XP21.1) WILD-TYPE     12      4      7      7     16
D100V2, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(XP21.1) MUTATED       78      2      3      2      3
  DEL PEAK 49(XP21.1) WILD-TYPE     91    303     16      7     34
D100V3, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          78                            91
  CLUS_2                           2                           303
  CLUS_3                           3                            16
  CLUS_4                           2                             7
  CLUS_5                           3                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(XP21.1) MUTATED       54     12      9
  DEL PEAK 49(XP21.1) WILD-TYPE    111     77    162
D100V4, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          54                           111
  CLUS_2                          12                            77
  CLUS_3                           9                           162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 49(XP21.1) MUTATED        4     10      0      1      2      4
  DEL PEAK 49(XP21.1) WILD-TYPE     37     27     39     11     39     20
D100V5, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                          10                            27
  CLUS_3                           0                            39
  CLUS_4                           1                            11
  CLUS_5                           2                            39
  CLUS_6                           4                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(XP21.1) MUTATED        8      8      3      2
  DEL PEAK 49(XP21.1) WILD-TYPE     59     59     40     15
D100V6, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                           8                            59
  CLUS_2                           8                            59
  CLUS_3                           3                            40
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(XP21.1) MUTATED        5     75      6
  DEL PEAK 49(XP21.1) WILD-TYPE    146    155    143
D100V7, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                           5                           146
  CLUS_2                          75                           155
  CLUS_3                           6                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(XP21.1) MUTATED       17     64      5
  DEL PEAK 49(XP21.1) WILD-TYPE    199    105    140
D100V8, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          17                           199
  CLUS_2                          64                           105
  CLUS_3                           5                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(XP21.1) MUTATED       67      9      9
  DEL PEAK 49(XP21.1) WILD-TYPE    159    134    152
D100V9, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          67                           159
  CLUS_2                           9                           134
  CLUS_3                           9                           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(XP21.1) MUTATED        8      2     48     27
  DEL PEAK 49(XP21.1) WILD-TYPE    133     58     75    179
D100V10, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                           8                           133
  CLUS_2                           2                            58
  CLUS_3                          48                            75
  CLUS_4                          27                           179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(XP21.1) MUTATED       47     17     11
  DEL PEAK 49(XP21.1) WILD-TYPE    125     79    119
D100V11, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          47                           125
  CLUS_2                          17                            79
  CLUS_3                          11                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(XP21.1) MUTATED       44      6     25
  DEL PEAK 49(XP21.1) WILD-TYPE    100    109    114
D100V12, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          44                           100
  CLUS_2                           6                           109
  CLUS_3                          25                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
