tcga_participant_barcode CLI_age CLI_vitalstatus CLI_daystodeath CLI_daystolastfollowup CLI_neoplasm.diseasestage CLI_pathology.T.stage CLI_pathology.N.stage CLI_pathology.M.stage CLI_dccuploaddate CLI_gender CLI_radiationtherapy CLI_radiations.radiation.regimenindication CLI_race CLI_ethnicity CLI_batchnumber CLUS_CN_cNMF CLUS_Methlyation_cNMF CLUS_RPPA_cNMF CLUS_RPPA_cHierarchical CLUS_mRNAseq_cNMF CLUS_mRNAseq_cHierarchical CLUS_miRseq_cNMF CLUS_miRseq_cHierarchical CLUS_miRseq_Mature_cNMF CLUS_miRseq_Mature_cHierarchical SMG_mutsig2.0_AATK SMG_mutsig2.0_ACIN1 SMG_mutsig2.0_ADAD2 SMG_mutsig2.0_AKAP2 SMG_mutsig2.0_ALPPL2 SMG_mutsig2.0_AMDHD1 SMG_mutsig2.0_APOE SMG_mutsig2.0_APOLD1 SMG_mutsig2.0_AQP7 SMG_mutsig2.0_ARRDC4 SMG_mutsig2.0_ASB16 SMG_mutsig2.0_ASPDH SMG_mutsig2.0_ATOH8 SMG_mutsig2.0_ATP6V0E2 SMG_mutsig2.0_ATP9B SMG_mutsig2.0_ATXN1 SMG_mutsig2.0_AVL9 SMG_mutsig2.0_B3GNT6 SMG_mutsig2.0_BAG1 SMG_mutsig2.0_BAGE2 SMG_mutsig2.0_BHLHE22 SMG_mutsig2.0_BICD2 SMG_mutsig2.0_BMP8A SMG_mutsig2.0_BTBD11 SMG_mutsig2.0_BTNL9 SMG_mutsig2.0_C12orf65 SMG_mutsig2.0_C14orf180 SMG_mutsig2.0_C14orf39 SMG_mutsig2.0_C16orf3 SMG_mutsig2.0_C16orf90 SMG_mutsig2.0_C19orf10 SMG_mutsig2.0_C1orf106 SMG_mutsig2.0_C2orf81 SMG_mutsig2.0_C4orf32 SMG_mutsig2.0_C9orf66 SMG_mutsig2.0_CACNA1D SMG_mutsig2.0_CCDC102A SMG_mutsig2.0_CCDC105 SMG_mutsig2.0_CCDC96 SMG_mutsig2.0_CD320 SMG_mutsig2.0_CHDH SMG_mutsig2.0_CHIT1 SMG_mutsig2.0_CLDN23 SMG_mutsig2.0_CLIC6 SMG_mutsig2.0_COL18A1 SMG_mutsig2.0_COQ2 SMG_mutsig2.0_CRIPAK SMG_mutsig2.0_CSGALNACT2 SMG_mutsig2.0_CTGF SMG_mutsig2.0_CTNNB1 SMG_mutsig2.0_DAXX SMG_mutsig2.0_DLEU7 SMG_mutsig2.0_DMKN SMG_mutsig2.0_DMRT1 SMG_mutsig2.0_DMWD SMG_mutsig2.0_DOK7 SMG_mutsig2.0_DSPP SMG_mutsig2.0_DSTN SMG_mutsig2.0_EP400 SMG_mutsig2.0_EPHA10 SMG_mutsig2.0_ERCC2 SMG_mutsig2.0_FAM108A1 SMG_mutsig2.0_FAM110C SMG_mutsig2.0_FAM157A SMG_mutsig2.0_FAM184B SMG_mutsig2.0_FAM194B SMG_mutsig2.0_FAM46A SMG_mutsig2.0_FAM83H SMG_mutsig2.0_FAM9A SMG_mutsig2.0_FANK1 SMG_mutsig2.0_FBRSL1 SMG_mutsig2.0_FEZ2 SMG_mutsig2.0_FOXQ1 SMG_mutsig2.0_FPGS SMG_mutsig2.0_FZD1 SMG_mutsig2.0_GARS SMG_mutsig2.0_GGN SMG_mutsig2.0_GLB1L2 SMG_mutsig2.0_GLI3 SMG_mutsig2.0_GLTPD2 SMG_mutsig2.0_GLTSCR2 SMG_mutsig2.0_GPR111 SMG_mutsig2.0_GPR144 SMG_mutsig2.0_GPR158 SMG_mutsig2.0_GPR20 SMG_mutsig2.0_GPR62 SMG_mutsig2.0_GPRIN2 SMG_mutsig2.0_HECTD2 SMG_mutsig2.0_HGC6.3 SMG_mutsig2.0_HHIPL1 SMG_mutsig2.0_HLA-A SMG_mutsig2.0_HLA-B SMG_mutsig2.0_HNRNPCL1 SMG_mutsig2.0_HSD17B1 SMG_mutsig2.0_IDI1 SMG_mutsig2.0_IDUA SMG_mutsig2.0_IER5 SMG_mutsig2.0_IRF2 SMG_mutsig2.0_IRX3 SMG_mutsig2.0_JMJD4 SMG_mutsig2.0_KANK3 SMG_mutsig2.0_KBTBD13 SMG_mutsig2.0_KCNK17 SMG_mutsig2.0_KCNQ4 SMG_mutsig2.0_KCP SMG_mutsig2.0_KCTD3 SMG_mutsig2.0_KIAA1211 SMG_mutsig2.0_KNDC1 SMG_mutsig2.0_KPRP SMG_mutsig2.0_KRTAP10-7 SMG_mutsig2.0_KRTAP4-5 SMG_mutsig2.0_KRTAP4-7 SMG_mutsig2.0_KRTAP5-5 SMG_mutsig2.0_LACTB SMG_mutsig2.0_LENG9 SMG_mutsig2.0_LMX1B SMG_mutsig2.0_LPPR2 SMG_mutsig2.0_LRIG1 SMG_mutsig2.0_LRP11 SMG_mutsig2.0_LRP3 SMG_mutsig2.0_LRRC4B SMG_mutsig2.0_LRRN4 SMG_mutsig2.0_LTK SMG_mutsig2.0_LZTR1 SMG_mutsig2.0_MADCAM1 SMG_mutsig2.0_MAL2 SMG_mutsig2.0_MAP1S SMG_mutsig2.0_MAP7 SMG_mutsig2.0_MEN1 SMG_mutsig2.0_MME SMG_mutsig2.0_MN1 SMG_mutsig2.0_MSH3 SMG_mutsig2.0_MSX1 SMG_mutsig2.0_MTFMT SMG_mutsig2.0_MUC2 SMG_mutsig2.0_MUC21 SMG_mutsig2.0_MUC4 SMG_mutsig2.0_MUC5B SMG_mutsig2.0_NEFH SMG_mutsig2.0_NMU SMG_mutsig2.0_NOL9 SMG_mutsig2.0_NOM1 SMG_mutsig2.0_NOTCH2 SMG_mutsig2.0_NOXA1 SMG_mutsig2.0_NPTX1 SMG_mutsig2.0_NSMAF SMG_mutsig2.0_OBSCN SMG_mutsig2.0_ODF3L2 SMG_mutsig2.0_OPRD1 SMG_mutsig2.0_OR2M5 SMG_mutsig2.0_OR5H2 SMG_mutsig2.0_PABPC1 SMG_mutsig2.0_PANK2 SMG_mutsig2.0_PAQR4 SMG_mutsig2.0_PCGF6 SMG_mutsig2.0_PCMTD1 SMG_mutsig2.0_PDCD6 SMG_mutsig2.0_PLEC SMG_mutsig2.0_PLIN5 SMG_mutsig2.0_PNPLA2 SMG_mutsig2.0_POLRMT SMG_mutsig2.0_PRKAR1A SMG_mutsig2.0_PRR21 SMG_mutsig2.0_PRSS27 SMG_mutsig2.0_PTPLA SMG_mutsig2.0_PTX4 SMG_mutsig2.0_QRICH2 SMG_mutsig2.0_RASIP1 SMG_mutsig2.0_RCCD1 SMG_mutsig2.0_RGMB SMG_mutsig2.0_RGS9BP SMG_mutsig2.0_RINL SMG_mutsig2.0_RNF135 SMG_mutsig2.0_RNF149 SMG_mutsig2.0_RNF222 SMG_mutsig2.0_RNF39 SMG_mutsig2.0_RREB1 SMG_mutsig2.0_SAC3D1 SMG_mutsig2.0_SALL3 SMG_mutsig2.0_SAMD11 SMG_mutsig2.0_SARM1 SMG_mutsig2.0_SCRT1 SMG_mutsig2.0_SEMA5B SMG_mutsig2.0_SEZ6L2 SMG_mutsig2.0_SHOX2 SMG_mutsig2.0_SIX6 SMG_mutsig2.0_SNED1 SMG_mutsig2.0_SPERT SMG_mutsig2.0_SYT8 SMG_mutsig2.0_TAF5 SMG_mutsig2.0_TEKT4 SMG_mutsig2.0_THEM4 SMG_mutsig2.0_TMEM189 SMG_mutsig2.0_TMEM194B SMG_mutsig2.0_TMEM200C SMG_mutsig2.0_TMEM74 SMG_mutsig2.0_TNIP2 SMG_mutsig2.0_TOR3A SMG_mutsig2.0_TP53 SMG_mutsig2.0_TPO SMG_mutsig2.0_TPSD1 SMG_mutsig2.0_TRIOBP SMG_mutsig2.0_TSC22D2 SMG_mutsig2.0_TULP1 SMG_mutsig2.0_UGT2B11 SMG_mutsig2.0_UQCRFS1 SMG_mutsig2.0_USP42 SMG_mutsig2.0_UTS2R SMG_mutsig2.0_WDR34 SMG_mutsig2.0_ZAR1 SMG_mutsig2.0_ZC3H12D SMG_mutsig2.0_ZFPM1 SMG_mutsig2.0_ZNF285 SMG_mutsig2.0_ZNF517 SMG_mutsig2.0_ZNF598 SMG_mutsig2.0_ZNF628 SMG_mutsig2.0_ZNF775 SMG_mutsig2.0_ZNF814 SMG_mutsig.CV_AMDHD1 SMG_mutsig.CV_APOE SMG_mutsig.CV_ASPDH SMG_mutsig.CV_ATP6V0E2 SMG_mutsig.CV_ATXN1 SMG_mutsig.CV_B3GNT6 SMG_mutsig.CV_BHLHE22 SMG_mutsig.CV_C10orf95 SMG_mutsig.CV_C14orf180 SMG_mutsig.CV_C16orf3 SMG_mutsig.CV_C19orf10 SMG_mutsig.CV_C1orf106 SMG_mutsig.CV_C4orf32 SMG_mutsig.CV_CCDC102A SMG_mutsig.CV_CCDC105 SMG_mutsig.CV_CD320 SMG_mutsig.CV_CLDN23 SMG_mutsig.CV_CLIC6 SMG_mutsig.CV_CRIPAK SMG_mutsig.CV_CTNNB1 SMG_mutsig.CV_DLEU7 SMG_mutsig.CV_ERCC2 SMG_mutsig.CV_FPGS SMG_mutsig.CV_FZD1 SMG_mutsig.CV_GARS SMG_mutsig.CV_GDF1 SMG_mutsig.CV_GLTPD2 SMG_mutsig.CV_GPRIN2 SMG_mutsig.CV_HES3 SMG_mutsig.CV_HHIPL1 SMG_mutsig.CV_IDUA SMG_mutsig.CV_IRX3 SMG_mutsig.CV_KBTBD13 SMG_mutsig.CV_KCNK17 SMG_mutsig.CV_KRTAP4-5 SMG_mutsig.CV_KRTAP5-5 SMG_mutsig.CV_LACTB SMG_mutsig.CV_LRP11 SMG_mutsig.CV_LZTR1 SMG_mutsig.CV_MAL2 SMG_mutsig.CV_MEN1 SMG_mutsig.CV_NMU SMG_mutsig.CV_NOL9 SMG_mutsig.CV_OPRD1 SMG_mutsig.CV_PANK2 SMG_mutsig.CV_PCGF6 SMG_mutsig.CV_PDCD6 SMG_mutsig.CV_PRKAR1A SMG_mutsig.CV_PTPLA SMG_mutsig.CV_RGMB SMG_mutsig.CV_RINL SMG_mutsig.CV_RNF149 SMG_mutsig.CV_SPERT SMG_mutsig.CV_SYT8 SMG_mutsig.CV_THEM4 SMG_mutsig.CV_TMEM189 SMG_mutsig.CV_TOR3A SMG_mutsig.CV_TP53 SMG_mutsig.CV_TPO SMG_mutsig.CV_UQCRFS1 SMG_mutsig.CV_ZAR1 SMG_mutsig.CV_ZFPM1 SMG_mutsig.CV_ZNF517 SMG_mutsig.CV_ZNF598 SMG_mutsig.CV_ZNF628 SMG_mutsig.2CV_AATK SMG_mutsig.2CV_ADAD2 SMG_mutsig.2CV_AKAP2 SMG_mutsig.2CV_AMDHD1 SMG_mutsig.2CV_APOE SMG_mutsig.2CV_AR SMG_mutsig.2CV_ASPDH SMG_mutsig.2CV_ATXN1 SMG_mutsig.2CV_AVL9 SMG_mutsig.2CV_BHLHE22 SMG_mutsig.2CV_BTBD11 SMG_mutsig.2CV_C10orf95 SMG_mutsig.2CV_C16orf3 SMG_mutsig.2CV_C19orf10 SMG_mutsig.2CV_C1orf106 SMG_mutsig.2CV_C9orf66 SMG_mutsig.2CV_CCDC102A SMG_mutsig.2CV_CCDC105 SMG_mutsig.2CV_CCDC150 SMG_mutsig.2CV_CD320 SMG_mutsig.2CV_CLDN23 SMG_mutsig.2CV_CLIC6 SMG_mutsig.2CV_COQ2 SMG_mutsig.2CV_CRIPAK SMG_mutsig.2CV_CTBP2 SMG_mutsig.2CV_CTNNB1 SMG_mutsig.2CV_DLEU7 SMG_mutsig.2CV_DMKN SMG_mutsig.2CV_DSPP SMG_mutsig.2CV_ERCC2 SMG_mutsig.2CV_FANK1 SMG_mutsig.2CV_FEZ2 SMG_mutsig.2CV_FPGS SMG_mutsig.2CV_GARS SMG_mutsig.2CV_GLTPD2 SMG_mutsig.2CV_GPRIN2 SMG_mutsig.2CV_HHIPL1 SMG_mutsig.2CV_HSD17B1 SMG_mutsig.2CV_IDUA SMG_mutsig.2CV_IER5 SMG_mutsig.2CV_IRX3 SMG_mutsig.2CV_JMJD4 SMG_mutsig.2CV_KBTBD13 SMG_mutsig.2CV_KCNK17 SMG_mutsig.2CV_KIAA1984 SMG_mutsig.2CV_KLHL1 SMG_mutsig.2CV_KNDC1 SMG_mutsig.2CV_KRTAP4-5 SMG_mutsig.2CV_KRTAP5-5 SMG_mutsig.2CV_LACTB SMG_mutsig.2CV_LRIG1 SMG_mutsig.2CV_LRP11 SMG_mutsig.2CV_LZTR1 SMG_mutsig.2CV_MAL2 SMG_mutsig.2CV_MAP1S SMG_mutsig.2CV_MAP7 SMG_mutsig.2CV_MEN1 SMG_mutsig.2CV_MUC5B SMG_mutsig.2CV_NEFH SMG_mutsig.2CV_NF1 SMG_mutsig.2CV_NMU SMG_mutsig.2CV_NOM1 SMG_mutsig.2CV_NOTCH2 SMG_mutsig.2CV_NOXA1 SMG_mutsig.2CV_NPTX1 SMG_mutsig.2CV_OBSCN SMG_mutsig.2CV_OPRD1 SMG_mutsig.2CV_PABPC1 SMG_mutsig.2CV_PANK2 SMG_mutsig.2CV_PDCD6 SMG_mutsig.2CV_PLEC SMG_mutsig.2CV_PLIN5 SMG_mutsig.2CV_PRKAR1A SMG_mutsig.2CV_PRSS27 SMG_mutsig.2CV_PTPLA SMG_mutsig.2CV_PTX4 SMG_mutsig.2CV_RASIP1 SMG_mutsig.2CV_RGMB SMG_mutsig.2CV_RGS9BP SMG_mutsig.2CV_RINL SMG_mutsig.2CV_RNF135 SMG_mutsig.2CV_RNF149 SMG_mutsig.2CV_RNF39 SMG_mutsig.2CV_RREB1 SMG_mutsig.2CV_SARM1 SMG_mutsig.2CV_SCRT1 SMG_mutsig.2CV_SEMA5B SMG_mutsig.2CV_SEZ6L2 SMG_mutsig.2CV_SGK223 SMG_mutsig.2CV_SHOX2 SMG_mutsig.2CV_SNED1 SMG_mutsig.2CV_SPIRE2 SMG_mutsig.2CV_SRPX SMG_mutsig.2CV_SYT8 SMG_mutsig.2CV_TAF5 SMG_mutsig.2CV_THEM4 SMG_mutsig.2CV_TMEM189 SMG_mutsig.2CV_TNIP2 SMG_mutsig.2CV_TOR3A SMG_mutsig.2CV_TP53 SMG_mutsig.2CV_TPO SMG_mutsig.2CV_TRIOBP SMG_mutsig.2CV_TSC22D2 SMG_mutsig.2CV_UQCRFS1 SMG_mutsig.2CV_USP42 SMG_mutsig.2CV_VARS SMG_mutsig.2CV_WDR34 SMG_mutsig.2CV_ZAR1 SMG_mutsig.2CV_ZFPM1 SMG_mutsig.2CV_ZNF517 SMG_mutsig.2CV_ZNF598 SMG_mutsig.2CV_ZNF628 SMG_mutsig.2CV_ZNF814 rate_non rate_sil SMG_AATK_mRNA SMG_ACIN1_mRNA SMG_ADAD2_mRNA SMG_AKAP2_mRNA SMG_AMDHD1_mRNA SMG_APOE_mRNA SMG_APOLD1_mRNA SMG_AQP7_mRNA SMG_ARRDC4_mRNA SMG_AR_mRNA SMG_ASB16_mRNA SMG_ASPDH_mRNA SMG_ATOH8_mRNA SMG_ATP6V0E2_mRNA SMG_ATP9B_mRNA SMG_ATXN1_mRNA SMG_AVL9_mRNA SMG_BAG1_mRNA SMG_BAGE2_mRNA SMG_BHLHE22_mRNA SMG_BICD2_mRNA SMG_BMP8A_mRNA SMG_BTBD11_mRNA SMG_BTNL9_mRNA SMG_C10orf95_mRNA SMG_C12orf65_mRNA SMG_C14orf180_mRNA SMG_C16orf3_mRNA SMG_C19orf10_mRNA SMG_C1orf106_mRNA SMG_C2orf81_mRNA SMG_C4orf32_mRNA SMG_C9orf66_mRNA SMG_CACNA1D_mRNA SMG_CCDC102A_mRNA SMG_CCDC150_mRNA SMG_CCDC96_mRNA SMG_CD320_mRNA SMG_CHDH_mRNA SMG_CHIT1_mRNA SMG_CLDN23_mRNA SMG_CLIC6_mRNA SMG_COL18A1_mRNA SMG_COQ2_mRNA SMG_CRIPAK_mRNA SMG_CSGALNACT2_mRNA SMG_CTBP2_mRNA SMG_CTGF_mRNA SMG_CTNNB1_mRNA SMG_DAXX_mRNA SMG_DLEU7_mRNA SMG_DMKN_mRNA SMG_DMRT1_mRNA SMG_DMWD_mRNA SMG_DOK7_mRNA SMG_DSPP_mRNA SMG_DSTN_mRNA SMG_EP400_mRNA SMG_EPHA10_mRNA SMG_ERCC2_mRNA SMG_FAM108A1_mRNA SMG_FAM110C_mRNA SMG_FAM157A_mRNA SMG_FAM184B_mRNA SMG_FAM46A_mRNA SMG_FAM83H_mRNA SMG_FANK1_mRNA SMG_FBRSL1_mRNA SMG_FEZ2_mRNA SMG_FOXQ1_mRNA SMG_FPGS_mRNA SMG_FZD1_mRNA SMG_GARS_mRNA SMG_GDF1_mRNA SMG_GGN_mRNA SMG_GLB1L2_mRNA SMG_GLI3_mRNA SMG_GLTSCR2_mRNA SMG_GPR144_mRNA SMG_GPR158_mRNA SMG_GPR20_mRNA SMG_GPR62_mRNA SMG_HECTD2_mRNA SMG_HHIPL1_mRNA SMG_HLA-A_mRNA SMG_HLA-B_mRNA SMG_HSD17B1_mRNA SMG_IDI1_mRNA SMG_IDUA_mRNA SMG_IER5_mRNA SMG_IRF2_mRNA SMG_IRX3_mRNA SMG_JMJD4_mRNA SMG_KANK3_mRNA SMG_KCNK17_mRNA SMG_KCNQ4_mRNA SMG_KCP_mRNA SMG_KCTD3_mRNA SMG_KIAA1211_mRNA SMG_KIAA1984_mRNA SMG_KNDC1_mRNA SMG_LACTB_mRNA SMG_LENG9_mRNA SMG_LMX1B_mRNA SMG_LPPR2_mRNA SMG_LRIG1_mRNA SMG_LRP11_mRNA SMG_LRP3_mRNA SMG_LRRC4B_mRNA SMG_LRRN4_mRNA SMG_LTK_mRNA SMG_LZTR1_mRNA SMG_MADCAM1_mRNA SMG_MAL2_mRNA SMG_MAP1S_mRNA SMG_MAP7_mRNA SMG_MEN1_mRNA SMG_MME_mRNA SMG_MN1_mRNA SMG_MSH3_mRNA SMG_MSX1_mRNA SMG_MTFMT_mRNA SMG_MUC21_mRNA SMG_MUC4_mRNA SMG_MUC5B_mRNA SMG_NEFH_mRNA SMG_NF1_mRNA SMG_NMU_mRNA SMG_NOL9_mRNA SMG_NOM1_mRNA SMG_NOTCH2_mRNA SMG_NOXA1_mRNA SMG_NPTX1_mRNA SMG_NSMAF_mRNA SMG_OBSCN_mRNA SMG_ODF3L2_mRNA SMG_PABPC1_mRNA SMG_PANK2_mRNA SMG_PAQR4_mRNA SMG_PCGF6_mRNA SMG_PCMTD1_mRNA SMG_PDCD6_mRNA SMG_PLEC_mRNA SMG_PLIN5_mRNA SMG_PNPLA2_mRNA SMG_POLRMT_mRNA SMG_PRKAR1A_mRNA SMG_PRSS27_mRNA SMG_PTPLA_mRNA SMG_PTX4_mRNA SMG_QRICH2_mRNA SMG_RASIP1_mRNA SMG_RCCD1_mRNA SMG_RGMB_mRNA SMG_RGS9BP_mRNA SMG_RINL_mRNA SMG_RNF135_mRNA SMG_RNF149_mRNA SMG_RNF222_mRNA SMG_RNF39_mRNA SMG_RREB1_mRNA SMG_SAC3D1_mRNA SMG_SAMD11_mRNA SMG_SARM1_mRNA SMG_SCRT1_mRNA SMG_SEMA5B_mRNA SMG_SEZ6L2_mRNA SMG_SGK223_mRNA SMG_SHOX2_mRNA SMG_SNED1_mRNA SMG_SPIRE2_mRNA SMG_SRPX_mRNA SMG_SYT8_mRNA SMG_TAF5_mRNA SMG_TEKT4_mRNA SMG_THEM4_mRNA SMG_TMEM189_mRNA SMG_TMEM194B_mRNA SMG_TMEM200C_mRNA SMG_TMEM74_mRNA SMG_TNIP2_mRNA SMG_TOR3A_mRNA SMG_TP53_mRNA SMG_TPSD1_mRNA SMG_TRIOBP_mRNA SMG_TSC22D2_mRNA SMG_TULP1_mRNA SMG_UQCRFS1_mRNA SMG_USP42_mRNA SMG_VARS_mRNA SMG_WDR34_mRNA SMG_ZC3H12D_mRNA SMG_ZFPM1_mRNA SMG_ZNF285_mRNA SMG_ZNF517_mRNA SMG_ZNF598_mRNA SMG_ZNF628_mRNA SMG_ZNF775_mRNA SMG_ZNF814_mRNA Amp_1q22 Amp_4p16.3 Amp_4q35.1 Amp_5p15.33 Amp_5q35.3 Amp_6p21.31 Amp_6q24.3 Amp_7p22.1 Amp_9q31.3 Amp_12q14.1 Amp_14q11.2 Amp_16p13.3 Amp_16q22.1 Amp_16q24.2 Amp_17q25.3 Amp_19p13.12 Amp_19q12 Amp_Xp11.22 Amp_Xq28 Del_1p36.23 Del_1q43 Del_2q22.1 Del_2q37.3 Del_3q13.31 Del_4q34.3 Del_6p24.3 Del_6q26 Del_7q36.3 Del_9p23 Del_9p21.3 Del_10q23.1 Del_11p15.5 Del_11q14.1 Del_12q14.2 Del_13q14.2 Del_14q21.2 Del_16q23.1 Del_17q11.2 Del_17q21.31 Del_17q24.2 Del_18q21.2 Del_20p12.1 Del_22q12.1 CN_10p_Amp CN_10q_Amp CN_11p_Amp CN_11q_Amp CN_12p_Amp CN_12q_Amp CN_13q_Amp CN_14q_Amp CN_15q_Amp CN_16p_Amp CN_16q_Amp CN_17p_Amp CN_17q_Amp CN_18p_Amp CN_18q_Amp CN_19p_Amp CN_19q_Amp CN_1p_Amp CN_1q_Amp CN_20p_Amp CN_20q_Amp CN_21q_Amp CN_22q_Amp CN_2p_Amp CN_2q_Amp CN_3p_Amp CN_3q_Amp CN_4p_Amp CN_4q_Amp CN_5p_Amp CN_5q_Amp CN_6p_Amp CN_6q_Amp CN_7p_Amp CN_7q_Amp CN_8p_Amp CN_8q_Amp CN_9p_Amp CN_9q_Amp CN_Xq_Amp CN_10p_Del CN_10q_Del CN_11p_Del CN_11q_Del CN_12p_Del CN_12q_Del CN_13q_Del CN_14q_Del CN_15q_Del CN_16p_Del CN_16q_Del CN_17p_Del CN_17q_Del CN_18p_Del CN_18q_Del CN_19p_Del CN_19q_Del CN_1p_Del CN_1q_Del CN_20p_Del CN_20q_Del CN_21q_Del CN_22q_Del CN_2p_Del CN_2q_Del CN_3p_Del CN_3q_Del CN_4p_Del CN_4q_Del CN_5p_Del CN_5q_Del CN_6p_Del CN_6q_Del CN_7p_Del CN_7q_Del CN_8p_Del CN_8q_Del CN_9p_Del CN_9q_Del CN_Xq_Del Amp_ARNT_1q22_mRNA Amp_AXIN1_16p13.3_mRNA Amp_BCL9_1q22_mRNA Amp_BRD4_19p13.12_mRNA Amp_CARD11_7p22.1_mRNA Amp_CCNE1_19q12_mRNA Amp_CDK4_12q14.1_mRNA Amp_CHIC2_4q35.1_mRNA Amp_COX18_4q35.1_mRNA Amp_CREBBP_16p13.3_mRNA Amp_ETV1_7p22.1_mRNA Amp_FAT1_4q35.1_mRNA Amp_FBXW7_4q35.1_mRNA Amp_FGFR3_4p16.3_mRNA Amp_FIP1L1_4q35.1_mRNA Amp_KDM5C_Xp11.22_mRNA Amp_KDR_4q35.1_mRNA Amp_KIT_4q35.1_mRNA Amp_MCL1_1q22_mRNA Amp_MUC1_1q22_mRNA Amp_NOTCH2_1q22_mRNA Amp_NSD1_5q35.3_mRNA Amp_PDE4DIP_1q22_mRNA Amp_PDGFRA_4q35.1_mRNA Amp_PMS2_7p22.1_mRNA Amp_RAC1_7p22.1_mRNA Amp_RAP1GDS1_4q35.1_mRNA Amp_TERT_5p15.33_mRNA Amp_TET2_4q35.1_mRNA Amp_TPM3_1q22_mRNA Amp_TPM4_19p13.12_mRNA Amp_TRAF7_16p13.3_mRNA Amp_TSC2_16p13.3_mRNA Amp_WHSC1_4p16.3_mRNA Del_ABI1_10q23.1_mRNA Del_BMPR1A_10q23.1_mRNA Del_BRAF_7q36.3_mRNA Del_BRCA1_17q21.31_mRNA Del_BTG1_12q14.2_mRNA Del_CBFA2T3_16q23.1_mRNA Del_CCDC6_10q23.1_mRNA Del_CCNB1IP1_14q21.2_mRNA Del_CDK12_17q21.31_mRNA Del_CDK4_12q14.2_mRNA Del_CDKN2A_9p21.3_mRNA Del_CREB3L2_7q36.3_mRNA Del_DDIT3_12q14.2_mRNA Del_DEK_6p24.3_mRNA Del_E2F3_6p24.3_mRNA Del_ERBB2_17q21.31_mRNA Del_ERCC3_2q22.1_mRNA Del_ETV4_17q21.31_mRNA Del_EZH2_7q36.3_mRNA Del_FANCA_16q23.1_mRNA Del_FAT1_4q34.3_mRNA Del_FBXW7_4q34.3_mRNA Del_FGFR1OP_6q26_mRNA Del_FGFR2_10q23.1_mRNA Del_FH_1q43_mRNA Del_FOXA1_14q21.2_mRNA Del_GATA3_10q23.1_mRNA Del_GPHN_14q21.2_mRNA Del_HMGA2_12q14.2_mRNA Del_IMMP2L_7q36.3_mRNA Del_IRF4_6p24.3_mRNA Del_KIAA1549_7q36.3_mRNA Del_KIF5B_10q23.1_mRNA Del_KTN1_14q21.2_mRNA Del_LASP1_17q21.31_mRNA Del_LRIG3_12q14.2_mRNA Del_LRP1B_2q22.1_mRNA Del_MACROD2_20p12.1_mRNA Del_MAF_16q23.1_mRNA Del_MAX_14q21.2_mRNA Del_MDM2_12q14.2_mRNA Del_MET_7q36.3_mRNA Del_MLLT10_10q23.1_mRNA Del_MLLT4_6q26_mRNA Del_MLLT6_17q21.31_mRNA Del_NACA_12q14.2_mRNA Del_NCOA4_10q23.1_mRNA Del_NEDD9_6p24.3_mRNA Del_NFKB2_10q23.1_mRNA Del_NIN_14q21.2_mRNA Del_NT5C2_10q23.1_mRNA Del_PARK2_6q26_mRNA Del_PAX8_2q22.1_mRNA Del_POT1_7q36.3_mRNA Del_PRF1_10q23.1_mRNA Del_PRKAR1A_17q24.2_mRNA Del_PRKG1_10q23.1_mRNA Del_PTEN_10q23.1_mRNA Del_RARA_17q21.31_mRNA Del_RB1_13q14.2_mRNA Del_RET_10q23.1_mRNA Del_SMAD4_18q21.2_mRNA Del_SMARCE1_17q21.31_mRNA Del_SMO_7q36.3_mRNA Del_SMYD3_1q43_mRNA Del_STAT3_17q21.31_mRNA Del_STAT5B_17q21.31_mRNA Del_SUFU_10q23.1_mRNA Del_TCF7L2_10q23.1_mRNA Del_TLX1_10q23.1_mRNA Del_TRRAP_7q36.3_mRNA Del_TTL_2q22.1_mRNA Del_VTI1A_10q23.1_mRNA Del_WIF1_12q14.2_mRNA Del_WWOX_16q23.1_mRNA Del_ZMYND11_10q23.1_mRNA TCGA-OR-A5J1 58 1 1355 NA stage ii t2 n0 NA 16-10-2014 male yes yes white NA 304.32.0 1 1 NA NA 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9.70978e-07 7.282335e-07 4.80000942 11.73725791 1.52697021 4.69558187 2.11196609 14.44109722 8.48312650 1.94204526 10.82123028 -0.05799229 3.41256477 NA 8.15877578 7.55305479 9.00946419 8.61798715 6.20881571 9.99095954 NA 2.94202649 10.05381771 5.41776477 4.36829342 9.20529915 3.50762975 9.67589266 2.26396585 NA 10.13924667 2.84891833 5.29870230 7.64938912 6.30835177 10.26677307 6.14170254 6.04006172 7.52323025 10.97476447 3.98642004 5.43388417 5.13185285 1.26393581 10.65799194 8.00002141 9.96578428 7.65283637 10.62458566 8.24352628 12.46006340 10.71887420 0.94200771 8.17564984 NA 8.22280070 2.52699525 NA 12.13509322 11.20265549 2.64247054 8.17325088 10.05967298 1.94204526 0.52697021 NA 9.59128615 10.17684733 6.21815344 10.41877616 9.51188545 3.89622340 10.40402092 7.50427239 10.68265397 3.40146664 0.52697021 2.74938409 6.62150979 11.05349165 1.26393581 3.64247054 NA -0.05799229 10.18222499 3.40146664 14.61254317 12.70705179 7.01916592 12.69205749 8.50808394 9.96578428 10.34290937 5.83684819 9.03573799 6.16119841 NA NA 2.40539338 12.51484855 4.40145981 1.26393581 8.62151016 8.27294698 5.59809718 5.96439863 9.22511825 9.74723364 11.06032217 10.20176727 4.18995894 -0.05799229 0.94200771 10.40072363 1.74940555 2.11196609 9.43688557 8.27965190 10.73319281 1.26393581 2.94202649 8.32901324 10.03081816 7.57138633 0.52697021 -1.05799229 -1.05799229 4.22743304 10.71434453 NA 6.46559252 8.54750960 11.15513414 5.96439863 10.44833749 9.27853657 9.06226772 -1.05799229 12.60914147 8.36619630 9.51946819 7.57502485 10.82658209 11.62699765 12.97914785 NA 11.05707357 10.05120758 12.74404134 6.32573359 3.46559579 0.94200771 5.43388417 8.98778954 9.06873449 8.37039012 4.22743304 5.60024001 9.05186066 9.79143496 NA -1.05799229 9.25717944 8.38289892 8.39099263 9.02707745 NA 4.46558926 10.98094890 6.05055394 7.02949264 10.53168108 6.36829517 5.13185285 11.57888108 7.17084843 2.64247054 8.40759621 10.26126741 5.86089329 5.52699212 3.89622340 9.03214245 9.33756415 9.13801729 NA 10.20764496 8.62502459 -1.05799229 9.34290937 7.74938476 11.10630840 10.55167039 -0.05799229 8.42785923 8.29738082 8.95465435 9.25150632 6.69691747 6.35142162 8.09431473 1.75990000 1.06630000 -0.00788630 1.93460000 0.88446000 0.00541390 -0.00899060 0.00319100 0.01084200 -0.00041585 -0.00180140 0.94282000 0.02838700 3.65690000 -0.00290910 0.02707600 1.23010000 -0.01648000 -0.02248400 0.03031000 0.00680440 0.00485790 0.00986690 -0.00138580 -0.00788630 0.00541390 -0.00899060 0.01153900 -0.02999400 -0.02999400 0.02300500 1.14700000 0.00555290 -0.00041585 -0.00041585 -0.00180140 0.02838700 -0.00553750 0.98039000 0.02104300 0.01293400 0.02146300 -0.00360110 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.878 -0.878 0.000 0.000 0.000 0.000 0.236 -0.941 0.000 0.000 0.000 0.000 0.000 0.000 -0.908 -0.908 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.878 -0.878 0.000 0.000 0.000 0.000 0.236 -0.941 0.000 0.000 0.000 0.000 0.000 0.000 -0.908 -0.908 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 9.657134 10.342909 7.947654 10.060971 5.787521 9.891857 10.492296 7.194696 10.222801 10.295177 10.742525 10.366196 9.278537 4.299582 8.866338 10.964745 8.449825 5.919309 11.901670 8.500451 11.155134 11.368557 9.166031 5.660940 10.201773 12.635299 9.390146 4.029497 8.680122 12.398769 11.659706 11.255874 10.750592 10.498536 9.3802812 9.6285305 5.1899589 5.3343466 12.4729239 7.3932411 9.4318778 9.7110412 9.1982385 10.4922958 8.0583739 11.1765480 9.4256743 10.2011847 7.9504585 9.3471713 10.2617020 4.5567421 6.2458113 4.8931972 10.3661962 9.2785366 8.6497168 7.9476545 11.2526427 6.3170689 9.7242091 8.5080839 4.4014598 6.7685787 1.9420453 9.5521321 11.4777913 11.5935302 10.5354211 7.1708484 0.5269702 5.7622079 9.8131652 10.1527012 11.8902146 6.7937789 8.1094483 8.9504585 11.9395623 13.9199359 11.4702398 7.0134924 10.9898355 9.3268137 10.3730051 5.6424705 8.1660315 8.1946953 4.7233893 12.7440413 4.9420312 9.9085354 8.5622497 10.5691078 0.9420077 10.2673354 11.2841046 9.4596992 8.4116716 10.9497581 9.1417023 8.2526427 8.8322941 0.5269702 10.0235933 8.2751854 8.0531657 2.2639658 9.0175091 9.7828079 TCGA-OR-A5J2 44 1 1677 NA stage iv t3 n0 NA 16-10-2014 female yes yes white hispanic or latino 304.32.0 1 2 1 1 2 1 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 4 0 0 0 0 4 0 4 0 0 0 0 0 0 4 0 0 4 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 4 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 4 0 6 0 0 0 6 0 0 4 0 0 0 0 0 0 0 0 0 4 0 0 4 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 4 0 4 0 4 0 0 0 0 0 2 0 4 0 4 0 0 6 0 0 0 0 0 0 0 0 6 0 0 4 0 1.8726e-06 1.144367e-06 10.0787071 10.9339716 3.5229471 9.1167673 5.7209515 12.4745122 10.2324924 1.6875087 8.1011558 7.4490793 4.0450760 -1.3125809 7.2189090 10.8660528 9.2573836 8.5793118 9.2469049 9.2642012 3.4159885 2.5944291 10.0395713 5.5077059 3.8969790 8.7112822 2.6211024 9.1053806 0.6875087 1.4948764 10.7633414 1.0094905 5.1326262 6.8920995 4.9163477 9.0307138 5.7960526 2.3879691 5.0273797 10.0985092 7.0318241 6.7428106 5.6300414 3.8168147 11.6326059 7.3844954 6.8064684 9.8599554 9.7257611 10.1273588 15.9352201 9.4843788 -1.3125809 5.6063919 1.2725010 9.6271072 2.2725010 NA 11.8348919 11.9888812 4.1793837 9.0105827 9.3608370 4.7749926 1.6875087 -1.2419527 7.5455090 7.9636521 6.0184450 10.9416708 10.0505675 NA 10.4721628 9.3555264 12.0230579 4.5229471 1.4948764 6.5701714 7.9283194 12.1635146 -1.3125809 5.0625664 -1.3125809 2.1469484 8.7291870 5.4424161 13.1951963 12.8260318 5.6236942 12.2039261 8.9269832 7.3277727 9.2266867 5.7428093 9.8721988 7.0318241 -1.3125809 4.4154477 3.8586574 12.4675550 5.3599533 2.3879691 12.2345430 8.7696769 8.0576485 3.4948892 9.6263723 7.7557422 10.0926481 9.8180985 4.1469566 -0.3124018 4.8372772 10.0622143 1.6875087 5.7319218 9.6278415 5.4424161 10.1793810 10.1464471 4.4948828 8.2456235 9.4332023 7.2985529 NA 2.1469484 2.5944291 9.9006321 11.2416371 0.6875087 7.3059131 9.6626595 12.9940881 6.1632612 12.9756010 9.1731964 11.5506921 1.8574635 14.3578246 8.3457397 10.4485057 8.3367841 10.5089034 10.5408375 13.2039051 2.1469484 11.4081997 10.3399248 12.9179988 2.5944291 3.7749873 4.4424128 6.7209515 9.5045116 8.1652864 5.2266858 4.9729316 6.0450803 7.8847444 9.2101095 NA 4.6648071 10.0312689 6.7319218 7.5367764 8.4570188 0.2725010 4.5701714 9.2554840 7.0004113 4.9729316 10.8878136 5.7209515 9.1011558 13.0291858 6.7428106 1.8574635 8.5235784 10.3944427 6.5944187 3.0798389 1.0094905 8.5853735 10.3524197 7.3705226 1.4948764 10.3797075 11.3036173 NA 10.5996688 9.1723507 10.8624536 9.1231983 -0.3124018 7.4052044 5.9163477 7.4721628 10.3979039 8.0384669 7.1592033 7.2189090 1.13120000 -0.02930200 -0.00012971 -0.14874000 -0.01380600 -0.02871700 -0.02807300 0.89609000 -0.00621580 1.31130000 0.00222820 0.00472790 0.00472790 0.00472790 -0.00179250 0.11082000 0.11082000 0.15353000 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9.635895 13.015431 9.790816 -1.312581 8.727818 12.920399 12.315404 11.050896 11.279751 10.129435 9.945116 9.736015 7.958991 7.472163 12.632972 6.925933 10.377089 8.711282 10.302698 12.348749 9.419695 12.653673 11.526643 10.837275 8.595921 7.944916 9.667668 9.619004 8.351086 7.432463 11.542396 8.534585 7.732195 10.091073 11.463344 3.972932 9.848660 8.268729 8.459018 7.242117 3.731922 9.800619 14.015361 12.232613 11.361499 6.653312 -1.312581 4.009455 7.510895 9.706423 9.868059 7.439072 10.542786 9.351975 11.396612 14.221557 12.562893 8.197303 9.970037 10.051115 10.591786 6.852435 7.163261 9.426465 5.163261 12.917999 4.302239 11.530271 8.909115 11.277647 4.570171 10.553509 10.500908 9.102213 9.622693 11.349751 10.399625 9.964815 9.026264 2.494876 11.689946 8.853691 9.060611 10.696657 7.167308 11.584617 TCGA-OR-A5J3 23 0 NA 2091 stage iii t3 n0 NA 16-10-2014 female yes yes white hispanic or latino 304.32.0 2 2 2 2 3 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 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NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.6175121 12.1552973 -0.5563933 7.5502689 4.8358382 9.5048940 11.8717521 1.7654499 9.7586723 3.1439648 2.4826676 NA 7.2540942 9.1740268 8.9913813 9.0508532 7.0397120 8.8771918 -1.5563933 2.0284984 10.1752661 4.7103105 7.0873790 9.6944133 0.8192594 9.7518619 NA 0.4435006 10.9985911 1.7654499 6.9088033 8.9050021 5.5415551 9.1594846 8.8812749 4.6333498 7.4322078 11.9002622 -0.5563933 NA 6.8272271 1.6134374 12.7292140 9.0864770 7.6985512 8.5203382 10.8880200 9.8947338 13.9344350 9.7615005 -1.5563933 5.4658896 NA 10.2987806 4.0284896 0.7654499 12.5825944 11.0630550 2.3504124 9.6991062 10.5408966 4.6134491 -1.5563933 -0.4723291 10.0392464 10.4125494 7.5546587 11.3217653 9.9182427 1.2509010 10.7939095 8.1900370 10.1782324 8.2004293 5.6033949 4.2764148 6.7744392 12.2889148 NA 1.0943036 1.2509010 -0.5563933 8.4631136 5.9592230 13.1331261 12.4376172 5.2622978 12.3842355 9.6765432 8.4265164 9.9787981 6.5096119 9.2095962 7.0765185 NA 2.1439484 3.3547342 12.3052882 3.4879108 3.5728048 9.5435280 8.5753797 9.3585730 7.6234316 11.3843869 9.2056474 10.7472692 12.4280294 9.1404903 -0.5563933 2.2508706 9.7038543 -0.5563933 6.0728797 10.2544960 8.2330564 9.9904172 3.8010759 4.4879172 8.9413646 10.8718829 7.3653636 NA -1.5563933 3.1984156 8.5069177 10.7292140 -1.5563933 6.3564115 8.6807326 11.6038669 4.7103105 14.3002158 9.5149852 9.3434309 3.3977208 13.9794056 9.2835139 11.9242019 7.7289252 10.9136732 12.5080971 13.8917681 1.0284984 11.3209986 10.6982562 12.9537924 5.2637030 4.9513174 3.6529797 5.8613748 8.5919995 7.5805141 8.1220173 4.0582299 6.4933719 8.7114798 9.1883567 -1.5563933 5.4093061 9.3246367 6.2700710 7.1217708 9.7439553 1.0284984 6.1714430 12.2147027 6.4933719 7.3594026 10.4971093 7.4851821 7.2281578 -0.5563933 5.9192566 3.5309821 8.3801606 10.7870694 5.4208024 6.1984097 1.9029611 9.1026266 9.5856298 10.1252005 NA 9.7977721 8.9283457 -0.5563933 11.6715898 7.7103092 10.6351989 9.7569727 1.4435006 8.8250656 6.7833728 8.9039785 9.8054666 8.8293850 7.1194796 9.1313971 -0.0125760 2.2105000 0.7379600 2.4245000 0.7484200 -0.0378980 -0.0579240 -0.0561730 0.7373900 1.4527000 2.2969000 0.7771400 0.7646600 0.7646600 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7.696188 4.900002 8.755271 12.345709 9.396992 3.572805 8.881275 12.242804 11.553190 10.963289 10.474879 9.135266 9.6134040 9.8739753 6.5149854 6.4491470 12.7275516 6.4988045 9.6705369 10.5856298 9.7062049 12.3490978 9.5919993 12.0781070 11.1420082 9.9111283 9.3406119 7.4208024 9.6896696 8.1159483 6.0508521 6.9627260 10.6308748 9.4596347 7.5381812 7.4658904 10.7727585 0.7654499 8.6008696 7.4960908 5.9353749 6.7789129 1.2509010 9.6302560 11.9942696 11.1476426 11.1378807 8.5843526 2.0284984 7.8507907 8.8802343 10.4293647 10.8147549 7.8336915 8.7699522 8.1124077 11.4302536 14.1275865 12.2182069 9.3337871 9.8087515 8.2100518 10.3322660 6.4035251 3.7289218 8.6541942 5.7289245 12.9537924 5.7922515 10.6435018 9.5021910 10.9070471 4.0284896 9.9253223 11.0244879 9.5939048 7.7541352 10.8350349 10.9817117 9.8320783 9.6252962 0.7654499 10.9544105 8.0378473 8.6403093 10.2720560 8.0434358 10.5624639 TCGA-OR-A5JA 53 1 922 NA stage iv t4 n0 NA 16-10-2014 female yes yes white NA 304.32.0 3 3 2 2 3 2 1 1 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8.0137788 9.7003078 10.5888730 9.5819251 10.7731392 8.4637920 3.5395187 9.5797345 12.3996189 8.8198684 8.4852296 12.3925455 5.5063512 10.5628959 10.1622370 9.7427562 5.1504784 9.8003321 12.5960341 9.4188243 -0.9200246 8.3374756 12.9501636 13.7302982 10.7821134 10.9835932 10.7999045 9.149014 8.439838 6.595787 7.838311 12.779877 6.893869 10.276075 10.164896 8.818180 12.298500 9.121747 11.895271 10.752703 11.833096 8.961202 9.123115 9.845788 7.328015 8.583914 8.665201 10.773139 8.463792 8.736370 5.900268 10.568932 4.124485 4.250014 8.408763 5.229834 7.080088 2.986975 8.301675 11.829119 12.264808 11.496358 4.694797 2.402013 3.834974 9.560878 10.501101 10.487356 5.821555 8.589863 9.179436 10.877749 13.915250 10.621669 9.386150 10.316700 10.968451 10.454584 7.804602 6.893869 8.775316 2.539531 12.451456 4.962729 9.780528 9.075855 10.084308 5.489479 9.844130 10.362018 5.229834 8.060227 11.768557 9.919292 8.838311 8.630835 NA 11.566068 9.202916 7.830862 3.472410 9.009346 9.738299 TCGA-OR-A5JB 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8.983641 10.649150 7.411196 2.534211 14.964860 12.551550 10.166922 10.241034 11.525074 4.558959 8.748152 12.751978 9.104062 NA 7.581960 14.694538 13.144876 10.710541 9.781403 10.598638 9.8610160 9.1924178 6.5616866 8.9796987 12.4530695 3.5342110 10.1266633 9.2756734 9.8024333 11.2875517 12.2963967 10.7574655 8.6738995 12.0429153 9.8160472 10.3365984 10.0036916 10.0739617 9.6987265 10.2454365 9.0383377 7.7041312 8.1078416 4.6411240 10.3724406 7.8139062 5.1913179 8.8421954 4.5342048 6.2260846 5.2431587 7.1052297 11.3639291 12.2442180 12.6719857 7.1511789 NA -1.1661789 10.4762697 10.9465319 11.6136911 8.6729705 8.9092457 8.9835138 11.0700798 13.6658160 11.2818829 6.6666572 11.1601961 10.5255101 9.9993017 0.8337402 7.1375476 7.7966626 9.2378438 12.1852580 0.8337402 10.7511387 9.5008781 8.6870761 3.1557007 9.4224813 11.4816747 8.4594755 7.7072107 11.7646887 10.5215796 8.6216691 9.5035376 NA 10.5394249 10.3450251 8.8459162 NA 6.3960087 10.0887951 TCGA-OR-A5JC 37 1 1750 NA NA NA NA NA 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6.8551937 9.2315692 6.8551937 8.0821086 7.1802891 10.1531104 NA 2.5173261 9.3175046 6.6602812 9.3972474 9.2146776 3.1792722 10.1921045 3.2542917 1.6693443 11.0672154 0.3474389 7.0862339 7.8551937 4.5568524 11.1924968 7.9248273 6.2177639 7.3917926 11.6486092 3.3473964 3.9323636 8.4348617 4.5953246 11.1956305 9.2285128 7.4766814 8.2452442 10.3753048 8.8492359 12.6125713 10.8073426 NA 8.6534606 NA 9.5714004 2.1547452 NA 13.1020776 10.7815057 6.6328004 10.7895181 10.4630927 3.1547614 2.5173261 1.5012098 10.0821084 8.7418613 8.6534606 10.4168485 8.7005455 -0.6526745 10.3523215 8.4585346 10.7965475 3.1065493 4.9323636 7.2422166 6.5762168 12.6994422 NA 2.1547452 0.9323636 0.9323636 9.3445782 3.4348550 15.9372494 15.5017375 5.9553198 12.0439339 8.8149025 9.2781360 9.9803940 6.4242150 8.9746225 8.0162840 -0.6526745 1.9323636 3.3518968 10.6760737 4.8068293 2.1547452 10.0702063 9.5881901 8.0490867 2.8068396 10.3544260 9.3904671 10.5519271 11.6591272 4.2053769 2.1547452 1.3473822 9.1221858 0.3474389 3.5953246 10.4208709 8.8650682 9.8312146 4.7397185 6.7986105 9.1081520 9.0547579 8.1991477 1.6693443 0.3474389 1.6693443 8.9584237 10.0556206 NA 6.2422157 8.5223245 10.6374176 4.7736641 10.2123587 9.7684116 11.6284594 4.4766798 14.3165154 9.0564825 10.6600435 7.5022168 10.9473116 12.1128921 13.0207079 2.6693216 11.1422207 10.3325292 12.2777665 4.4766798 3.4348550 0.3474389 6.7397158 10.2520333 7.8630985 8.2987417 3.3473964 5.6511809 8.8650682 9.4188612 NA 6.0056111 9.8392518 8.0408859 5.5588003 6.5457954 1.3473822 6.7137206 12.0650752 6.2177639 4.9912543 10.2617840 6.9019879 8.2482654 NA 6.7049508 4.8709614 8.8884955 11.1639225 5.1547533 1.3473822 0.3474389 9.1975856 9.2254497 9.9840233 1.3473822 10.0400143 8.6939124 1.6693443 12.1725563 7.4080945 10.9753886 10.0347745 1.6693443 8.3642069 6.8551937 8.3917931 9.3459893 8.2422166 5.5568524 9.7425580 -0.299220 0.260430 0.314660 1.426700 1.322100 0.515940 0.478210 -0.154000 -0.291060 0.835890 0.834900 0.381250 0.371410 0.411950 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7.537223 8.296963 9.009177 12.012513 9.692804 4.154753 8.364207 12.122598 13.575767 10.484159 10.679995 9.701648 9.5364943 9.0513025 5.0198220 6.7736641 11.9621086 5.3246774 10.1312156 9.2557915 9.2707263 12.3205580 9.5135618 10.4188611 9.8472845 10.6727042 9.5235720 9.0408859 9.7472108 7.7049508 6.6602812 7.5383100 7.6235231 9.4779693 9.0206903 8.1320339 10.7705147 4.1022886 1.9323636 7.9285995 -0.6526745 6.8472441 1.6693443 8.6648113 11.8792676 11.4282163 11.9556536 7.3586257 NA 6.1547533 9.8180577 10.8487384 11.5501348 6.4454304 9.0303935 8.8472447 11.1487029 15.0515186 11.6471792 7.7224380 10.4282163 9.1643823 11.0038236 7.5665671 8.4454308 7.6693266 6.2542898 12.2777665 3.9323636 10.4408163 8.8109231 9.7418615 3.1547614 8.5568520 10.6471792 8.6983380 8.3530233 9.2452442 10.2046022 9.3876884 8.9547291 NA 10.2218960 8.8412542 8.7196544 10.0625028 9.0770194 10.2407004 TCGA-OR-A5JD 57 0 NA 2782 stage ii t2 n0 NA 16-10-2014 female NA yes white NA 304.32.0 4 5 NA NA 4 4 3 2 3 3 0 0 0 0 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8.9127696 8.5272111 8.1090063 NA 2.7387246 1.6012211 6.0474686 10.8590711 NA 6.5272111 9.0753232 10.9525928 7.6324304 5.5830647 10.6742822 9.9206311 2.0866479 13.4817137 8.8165021 8.9668518 7.7751388 11.5881916 11.5870538 12.8366278 7.5129032 11.3158008 9.7284325 13.5893284 2.7387246 6.9517090 NA 7.0207511 7.8976694 8.5437263 7.9797236 2.4492180 5.9657843 9.6705274 9.2905110 -0.7207070 2.2792930 8.7610831 7.2040967 2.4572003 8.7310926 1.8642555 4.8338717 11.1790183 6.5739047 NA 8.5176887 6.9231397 11.2877124 0.2792930 6.2334797 0.8642555 8.2820987 10.3534252 4.6368334 2.8642555 1.8642555 9.4098542 9.2276511 9.7086904 4.5272142 10.3480621 8.3016517 -0.7207070 13.1645035 7.8679984 10.4454469 10.6790957 2.7387246 7.4591931 6.8338730 8.8067607 9.6992440 7.8415260 7.2792837 8.7545712 -0.772260 0.053806 0.063366 0.066160 0.070243 -0.775580 -0.778120 0.048404 0.054582 0.060794 -0.780070 0.037549 0.037549 0.091880 0.065656 0.019083 0.019083 -0.362150 -0.363180 -0.772260 -0.772260 -0.739410 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12.913755 10.356213 10.911370 10.167266 9.7438295 9.0441553 6.3127069 7.1496486 11.2644142 8.5295820 10.5266180 9.1372648 9.8958326 12.3851923 6.9446195 10.7242986 12.0003252 10.1657424 8.3720410 8.5272111 9.7771356 6.7949837 6.0207511 6.4805253 8.7771356 8.4492089 6.2181573 9.2651258 11.6758886 NA 4.0866394 8.0003832 0.8642555 8.5830643 3.1861677 8.1588672 11.7224863 11.6820294 11.5185839 8.1058321 3.2792781 6.9517090 9.9978167 9.6629880 11.7217090 9.8319529 9.4252159 8.8791966 11.1596326 13.9432309 12.6318790 7.7139123 9.6456060 8.6012118 11.0878458 7.8791966 8.1403707 9.1200616 6.8866136 13.5893284 6.8939931 10.6395822 9.2522636 9.9383877 6.6971358 9.7890587 11.0304093 9.4175555 7.3560998 11.8884625 12.1343469 8.9779885 8.7407633 NA 10.7920785 9.5944334 9.0790511 2.8642555 8.3851924 11.1129645 TCGA-OR-A5JE 17 1 2105 NA stage i t1 n0 NA 16-10-2014 female yes yes white NA 304.32.0 1 1 NA NA 1 1 1 4 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 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NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.3174334 11.0888991 2.6373088 NA 9.7543661 17.5933719 9.3824528 1.9852454 8.0202322 NA 1.1778540 -0.8221460 5.9058034 8.5151246 9.0155096 8.9159741 7.5177316 10.7890449 NA 0.7628165 9.3602760 4.5354309 5.2439699 8.3775541 2.6786804 9.6009976 -0.8221460 1.1778540 11.7283880 NA 6.0361121 8.1494255 6.6290928 4.7925899 8.5485692 6.8573615 6.7925912 12.3206270 0.1778540 2.1778859 6.7247758 2.6373088 11.7324706 8.5420165 6.7628444 7.1665668 9.5915096 9.3664706 13.5496584 11.3621372 -0.8221460 9.4540062 -0.8221460 9.3187116 1.7628590 NA 13.2337573 11.3326998 3.8783232 10.5337834 10.0825163 3.8783232 0.1778540 NA 10.1349838 9.4609700 7.0420675 10.8212870 10.2215926 1.1778540 10.6449777 6.2002493 10.8865345 4.0437994 1.7628590 4.6373146 7.7515287 13.1200296 NA NA NA 0.1778540 6.5701988 3.3478074 14.4720666 14.0340913 6.9049176 13.8025949 7.8289336 9.1580214 10.1679857 6.7014437 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8.713157 9.421056 6.508798 10.064340 10.228411 10.979186 12.359655 7.959242 8.751529 9.775934 9.450511 9.212681 8.038968 4.792590 9.036220 10.513830 8.834307 7.657662 11.544477 4.905803 9.737259 10.071942 8.319989 6.355501 8.639361 11.937146 8.657662 3.637309 7.126249 12.886858 11.985840 11.254704 10.182102 9.755311 8.3897698 8.0757273 2.4998076 7.3071644 11.6596811 8.5266100 9.3452999 10.2473314 9.1320781 12.3596552 10.4839434 9.0451603 10.3155006 11.0847723 8.3994689 7.2385777 10.1167262 8.6311523 7.9559590 8.9588807 9.2126807 8.0389684 8.5106344 9.8687528 11.9151291 1.1778540 9.3861160 8.8054156 8.7267035 4.7925899 NA 6.7401248 11.4420311 11.3222213 12.1236913 7.6896346 1.1778540 8.6332089 10.4481770 10.3952337 11.1683403 4.4998076 7.5221774 8.8904087 10.4884945 14.2468279 10.9435822 8.5177316 9.4446683 9.2222759 9.6444681 6.4258101 3.7628484 7.4862204 4.2222791 11.8661320 NA 9.7684687 7.8108768 9.3639961 6.6041470 9.4481770 10.7712729 7.8072383 9.9310984 11.4417377 10.3193502 10.0381928 8.6145932 0.7628165 9.2574065 9.7889065 7.9655234 NA 6.9657843 8.8449932 TCGA-OR-A5JF 69 0 NA 1259 stage ii t2 n0 NA 16-10-2014 female yes yes white NA 304.32.0 2 2 NA NA 2 2 2 2 3 2 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 4 0 0 0 0 0 0 0 0 0 4 0 0 0 0 4 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 4 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 1 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 4 0 4 0 0 0 0 0 0 0 0 0 4 0 0 0 0 4 0 0 0 4 0 0 0 0 0 4 0 0 0 2 0 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 4 0 0 5 0 0 0 0 0 0 4 0 0 0 0 4 4 0 0 0 0 4 0 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 4 0 0 0 0 0 0 4 0 0 0 4 0 0 0 0 4 0 0 1 3.537134e-06 1.803245e-06 8.1989400 10.8338963 4.6488911 6.6477232 7.5871894 13.3068322 8.3903994 1.4345615 9.6797552 2.0866139 2.8917302 NA 7.4663906 10.2223467 8.6688463 8.2177740 7.6130292 10.8643224 NA 3.7564683 10.3258919 5.5220055 8.0065656 8.5021687 0.6557182 9.5438131 0.6272333 3.0195062 11.1882364 NA 6.9956937 7.9648093 6.0108917 6.2565446 7.8293111 3.3276299 8.3345464 11.4207905 5.4216037 0.9491240 5.7870589 4.7971116 13.4129461 9.6073268 8.2455727 8.7225842 10.3267597 9.9457300 13.4655008 10.1468235 -1.3729535 3.0195062 4.5579247 9.6377153 1.9491240 -1.3729535 13.6919720 9.7344043 7.1970427 9.6612984 9.9383678 3.0195062 2.6271866 2.1731594 9.5784719 10.1812963 8.5519997 9.2710435 9.8027367 -1.3729535 10.0855938 9.0065656 11.3659128 1.7078340 4.2996110 8.1856079 7.8939737 12.4055723 0.9491240 4.4085488 1.2121335 1.7970960 7.4632374 3.7971168 14.3782560 13.4552681 5.0375975 11.6679118 9.3859683 9.4199774 10.0011398 2.7146412 9.2912877 6.8317582 2.7146412 0.2121335 2.6316864 12.1589341 4.2996110 3.2121491 9.1120102 9.8584083 8.2827178 3.2710372 11.2402859 7.0251617 11.3197983 11.7270001 3.2121491 0.6272333 NA 10.3401440 0.9491240 5.4851692 9.8798526 7.2960719 9.8372496 0.6272333 3.9491147 8.7535303 9.1750457 8.1448565 NA -1.3729535 1.7970960 8.5857400 10.0130496 NA 7.5549648 9.9770213 9.9962392 6.6384142 12.2752076 9.2951858 7.5259397 2.6271866 14.3540439 9.2737460 11.5528529 7.0534524 10.0466207 12.3109494 13.7279316 5.1663459 11.5949538 10.5453050 12.5779253 3.5813874 3.9491147 4.4600741 5.6495551 9.0344548 8.2960724 8.7215948 3.5340741 5.8655922 8.9263950 8.8881067 -0.3727667 7.0365781 9.4011504 7.4052640 4.6969342 7.5516137 0.2121335 3.0866139 12.0597290 5.3820758 3.7971168 9.9786786 7.4183502 8.6229541 NA 5.5579247 2.3276299 8.6550931 12.4125896 4.3820723 2.0866139 0.2121335 8.8715511 9.7977382 9.8974825 NA 10.5412358 8.1740818 -1.3729535 12.3413253 8.2619980 10.6471253 11.1731169 0.6272333 8.4553235 7.2083875 9.0763357 10.4691445 8.2818234 6.7040032 9.3006818 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8.668846 10.713987 10.594413 10.255177 9.996784 9.495238 4.776936 9.792716 12.210505 9.502168 6.028067 12.527488 3.271037 9.996239 10.426874 8.845145 8.523535 9.970373 13.037506 10.358082 NA 8.517451 12.102921 12.017490 11.503459 10.755826 9.704003 9.3761514 8.4537357 6.1740808 5.6271866 13.0330599 5.7971116 9.6578543 9.2065031 9.5242763 12.0336579 8.2492391 11.7210998 11.0790576 10.0747871 8.5144079 6.4150893 9.5711671 8.0280668 6.8986498 7.6758646 9.9967845 9.4952381 7.5189403 7.5813836 11.0529276 3.2710372 3.9125924 7.6384142 6.0783985 7.5549648 -0.3727667 9.8064742 11.6312320 11.1443644 11.2015442 7.9102758 0.9491240 7.5579247 9.0108914 10.1280290 12.2772292 8.9355263 9.0269992 8.3189305 10.5733624 14.0596964 11.6790758 7.7409296 8.8845750 8.8342014 10.5810199 7.3482864 8.7996148 8.9091172 3.2710372 12.5779253 5.9218076 10.5479122 8.6426023 9.9395030 6.6384142 9.3577167 10.3804039 9.0670180 8.5726309 11.0539760 10.7477491 9.1049454 8.6016018 -1.3729535 11.1409814 8.7500152 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NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.6119101 11.5949666 2.1023222 7.7712630 8.0956375 14.9003075 10.0252128 4.5959690 9.9813999 -0.8959318 3.2740380 -0.8959318 8.2230566 11.0759323 8.6701697 7.9620967 7.0813961 10.9346033 NA 1.1041353 10.2178579 4.9114711 9.4439657 9.1320218 1.1220100 9.4316685 NA 0.1040682 11.7222718 1.1041353 7.1950217 6.9242947 1.9114615 5.9114711 6.8114749 4.5303829 6.0348540 11.9583998 0.6891202 3.1915784 6.6510101 1.4260500 11.3656230 9.3825652 7.4748035 8.4192654 9.6481141 10.0517527 12.8793135 11.3741190 -0.8959318 7.2538626 3.1915784 9.4758925 2.2740529 -0.8959318 13.4547097 11.4386684 4.3135724 10.0821111 10.1627841 -0.8959318 0.1040682 NA 9.3998848 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11.5640314 3.7945198 7.4854623 3.8876325 11.9299768 9.2927748 4.3470632 8.0475046 5.0575586 2.2409554 NA 8.8035128 10.4660062 8.0322915 8.6087327 6.3633673 10.1535063 NA 5.9100011 10.1068020 5.0575586 8.4306654 8.5494116 1.5105569 9.7824512 -0.1123188 NA 11.4617539 -0.1123188 8.5334719 8.3794867 3.8876325 6.7078119 8.6525051 4.9750982 7.3714491 11.4977355 3.6949916 0.8876033 8.4763481 4.9750982 11.4889400 8.9072242 7.2185506 8.6189526 10.2831677 9.4364555 11.9213903 10.1272320 NA 1.4725917 NA 9.6307849 3.0575542 0.8876033 13.2988796 9.9196791 4.6949860 9.1753459 10.1637578 3.9750982 -0.1123188 NA 10.4912599 7.3222617 8.0625594 9.3075936 9.8805718 NA 9.3653918 9.5635906 10.4650623 3.3325647 3.8876325 6.0373800 7.6558176 12.5000413 NA 5.7205247 2.2095469 NA 8.9750962 4.1355595 15.6753052 14.1838335 6.6246449 9.3915585 9.5932658 8.6291005 10.3264253 6.0373800 9.1116592 8.0725089 5.5023433 2.2095469 3.7964420 11.5224445 5.2799504 2.4725917 10.4977355 9.4968122 7.6521731 -0.1123188 10.8094744 9.4666477 11.3959235 11.7537455 5.9961582 2.2095469 -0.1123188 9.3012614 3.3470703 3.4725917 10.2885129 8.0625594 9.4763481 10.5811204 6.6558183 8.5621081 8.5600588 7.2799513 NA 2.2095469 NA 8.2005166 11.0259053 NA 6.2799504 8.2670118 10.3784843 6.1544192 4.3470632 9.8876334 7.3633665 6.8064968 13.4927657 9.0897574 12.0100473 7.6425211 10.9169207 11.6751280 13.9373119 2.6949916 10.9258666 9.6917645 13.3356207 3.5880730 5.7456138 1.8876422 5.3794858 8.7763768 7.7702767 8.1074310 2.4725917 5.5314906 9.7990254 9.6771671 -0.1123188 4.2095625 9.2319294 7.5529695 5.4547517 8.2994832 NA 6.6820493 13.5920775 7.4111957 -0.1123188 11.3475773 6.0774588 10.9790689 0.8876033 6.1914146 2.8876422 7.9909214 10.9797299 5.2451838 5.6425196 -0.1123188 8.8677729 9.2095616 9.1684044 0.8876033 9.7221045 8.3914593 -0.1123188 11.3455273 7.1164521 10.4612806 10.5880731 1.4725917 7.2274831 6.8064968 7.4800906 9.0194904 7.6820493 6.2451857 9.2604985 -0.4454100 0.4725100 0.4478700 0.4754300 0.4754300 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7.182254 8.929293 4.887632 9.339648 10.879864 11.229152 6.347065 11.688938 2.887642 10.378484 10.011755 8.542270 10.242555 9.211814 12.681846 9.647522 NA 9.220789 12.529459 14.007385 10.166873 10.216308 9.262673 9.6817405 9.5041824 5.1355595 5.3470668 12.8250073 8.6591229 10.4345279 8.6223433 9.4782205 12.5811204 9.9279233 12.3817390 10.3633669 10.3138983 8.8418297 9.1308073 9.5404785 2.8876422 5.3470668 6.2133434 7.1822543 8.9292927 7.0957219 7.8819870 10.4489214 -0.1123188 4.9750982 7.9697825 3.0575542 6.9856655 4.2095625 9.1402989 11.7502708 11.9207123 12.1848364 7.8005227 2.6949916 6.2799504 9.9361204 10.8389182 11.3944369 10.0836208 8.6558176 8.7975267 10.1660830 14.6853457 11.6164043 7.9483293 9.8094744 8.6525051 11.0130470 7.3552392 7.6358262 8.3633669 6.6949888 13.3356207 6.3138988 11.2523154 9.9550678 9.9631127 6.6558183 9.4209632 11.4321150 8.8447356 7.9644489 11.5815560 11.1764996 9.6274141 9.0675425 NA 10.2131188 9.5169900 8.7362565 0.8876033 8.4033333 10.5323911 TCGA-OR-A5JJ 65 1 490 309 stage iv t4 n1 NA 16-10-2014 male yes yes white NA 304.32.0 2 3 NA NA 2 2 1 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.5671765 12.1224151 2.1577875 5.8760921 6.6237601 16.3053243 9.4028626 2.0057952 9.7015906 5.1212600 3.1757002 NA 6.0157674 10.2230939 8.5135768 8.3436521 6.8965528 9.6944446 -1.9500905 2.6432097 11.0529063 5.0837835 5.0057817 8.4524060 1.6818540 9.8442860 -1.1642376 1.1577552 11.0483538 2.5363016 7.8937948 7.4797132 5.8470849 8.0932454 8.6829145 4.1934091 8.0932454 12.8132267 5.0057817 2.7427392 7.6938382 6.4057133 14.4000068 10.4846643 9.2346010 8.1757072 10.1757073 9.2558175 12.7736872 10.1840322 NA 7.6073466 NA 9.3885264 2.8358635 NA 12.9100825 11.9394730 3.8358534 9.1757075 10.3211836 3.5907457 1.8358432 1.7731946 7.7547205 9.3466214 6.8358571 9.9365197 8.8637635 -0.1640759 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0.000 1.279 1.279 0.000 0.000 0.000 0.000 1.203 1.203 0.000 0.000 0.000 1.316 1.390 1.158 0.000 0.000 0.000 0.000 2.520 2.520 1.456 1.456 0.000 0.000 1.426 1.426 0.000 1.493 1.018 2.658 0.494 8.422697 10.361867 7.872031 10.487806 4.742750 9.976048 12.001550 8.744250 10.898578 10.560797 10.034302 10.655238 8.171248 5.790053 10.352414 11.206000 9.144196 9.830211 11.196430 5.343653 11.239402 10.160038 7.925970 7.913368 9.744250 12.644017 8.817425 1.643210 7.681347 12.375259 12.083637 11.252679 10.713525 11.248956 8.5756379 7.7695483 5.6432126 7.8106449 12.6740764 7.6302730 8.9206658 9.6671646 9.0622696 12.0015495 9.9586854 11.1529873 10.0126040 10.8857059 7.8159968 7.5118143 9.5915796 9.1270281 9.5003047 8.4713940 10.6552381 8.1712479 7.8773798 8.0932454 11.7560241 0.8358432 7.5328250 8.7665948 6.4357703 7.7031360 4.5907457 9.1611629 11.2279064 12.0951593 10.5944970 7.3476099 1.4208327 6.0837857 8.1999918 11.2070895 10.2860377 7.0501762 7.9126732 8.9325726 11.2284431 14.1842051 11.0204228 7.6335191 8.1419191 9.7761710 9.6407950 6.5705677 4.3277089 9.2537099 6.0057817 12.2981040 5.1396373 9.8159969 8.8231214 8.2452484 4.0453119 9.6568340 10.2798369 9.2891281 8.7077625 11.1313393 10.1020582 8.3711328 8.4019116 NA 11.0830016 8.9352051 7.9415301 10.4971901 8.5397610 9.9120049 TCGA-OR-A5JK 49 0 NA 1497 stage iv t4 n0 NA 16-10-2014 male yes yes white NA 304.32.0 2 4 NA NA 4 2 1 1 1 1 0 0 0 0 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 4 0 4 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 4 0 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 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9.7411892 11.0303452 6.8090041 5.3097728 8.5693342 8.1250321 12.2982383 4.9312623 10.6475655 8.4889154 10.0282390 1.1942762 9.5086893 10.5686098 8.4134633 9.9962725 11.3205691 10.5511136 9.4453826 8.7047292 NA 10.6386955 8.7334537 8.7660727 8.1171267 8.9580605 10.5101991 TCGA-OR-A5JL 36 0 NA 670 stage i t1 n0 NA 16-10-2014 female yes yes white NA 304.32.0 4 5 NA NA 3 4 1 3 1 1 0 0 0 0 0 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 6 0 0 0 0 4 0 0 0 0 4 4 0 0 0 0 0 0 0 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 4 0 0 4 0 0 0 0 0 7 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 4 0 0 0 0 0 4 0 6 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 2 4 0 0 4 6 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 4 6 0 0 0 0 0 0 0 4 0 0 0 0 2 0 0 0 0 0 0 4 0 0 0 0 0 0 0 6 0 0 4 0 4 4 0 0 0 4 0 0 0 0 0 4 0 0 0 0 4 0 0 4 0 0 0 4 0 0 0 0 0 0 4 0 0 2 6 0 0 0 4 0 0 4 0 4 6 0 0 0 2 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 4 0 4 4 0 0 0 0 4 4 0 0 0 0 0 0 0 0 0 4 0 0 4 0 0 0 0 0 4 0 0 0 4 0 0 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 2 4 0 6 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 4 0 0 0 4 0 0 4 6 0 0 0 0 4 0 0 0 2 0 0 0 0 2.011312e-06 1.2484e-06 8.92975372 11.93114285 3.96196590 7.16948211 8.92557788 16.30581419 11.01345074 4.23209278 9.98430438 5.17694903 1.70717136 NA 7.74305308 9.65761750 8.58788250 8.75251312 8.78514412 10.94507536 0.91019539 2.36960607 9.47240532 3.36959211 8.98831374 9.58964310 -1.07552001 9.33117582 6.56837419 NA 9.72153757 5.41795713 4.31513144 7.66505019 3.61060558 9.84606466 6.33642801 4.74305173 8.83794072 10.32484817 5.79280591 3.61060558 5.09998945 1.49513230 10.68412627 10.61276854 7.17225748 7.61060263 9.40101388 6.34479122 13.38538969 10.35879546 -0.08988138 7.27648550 -0.08988138 8.40001100 2.49513230 1.49513230 12.69643254 10.70213969 6.46475157 8.93806903 8.68165236 3.71751741 0.49508112 -0.92631685 9.56658781 7.90168451 7.63467676 9.96273091 10.27703151 NA 10.59096199 8.61924682 12.10998859 2.23496109 1.23210813 7.39800313 6.97085940 10.40551826 2.08007774 2.91015700 0.49508112 -0.08988138 7.57549916 2.81705016 16.12370964 16.77752383 3.81897323 14.37368505 6.41168215 7.73988590 9.75722031 5.23209278 9.16480186 6.73671175 1.23210813 -1.08988138 3.76863956 11.21963926 4.49512590 1.49513230 10.23039938 10.44883685 5.66371464 3.30247991 9.56121462 7.23960044 12.24610449 9.95995703 3.15809462 NA 1.91015700 9.13155682 1.71751741 6.04971353 8.94770998 9.57015873 9.42979922 0.91019539 8.28954125 9.00728634 8.04715391 8.78206810 0.49508112 0.49508112 2.49513230 9.42979922 10.43078162 NA 7.49136330 9.20593177 10.19902900 7.82604250 11.06244778 9.79814499 8.86871578 0.49508112 12.48475645 8.61233554 10.29383486 6.00819553 10.43666210 12.44980643 11.34426983 6.15809058 10.61795336 9.67005108 9.36856954 3.49511950 3.76814197 -1.08988138 5.35310800 8.07255443 9.36240413 8.64148209 2.36960607 4.95455927 8.71751775 9.38792125 NA 7.76503144 9.82678886 8.47049579 NA 8.19685929 2.23207742 5.46475321 8.69643241 5.59666387 3.15809462 9.33852314 5.59666387 7.05482135 2.99761759 6.65163009 2.36960607 8.78821391 9.93684535 6.25001222 4.69152300 -1.08988138 9.41299465 8.99231185 8.76034971 NA 10.57416567 8.33852291 -1.08988138 12.41547826 8.08008787 11.29224650 8.66337949 1.91015700 6.03944550 6.58258761 7.66838580 9.16046141 6.82902627 6.37776928 7.15861272 -9.9341e-02 8.8666e-01 8.8666e-01 9.7853e-01 9.7853e-01 9.7564e-01 9.4062e-01 9.8432e-01 -1.1963e-01 9.6935e-01 1.0914e+00 6.2970e-01 -3.9937e-02 -3.9937e-02 -3.0853e-02 3.8099e-02 3.8099e-02 2.7995e-01 2.7995e-01 -9.9341e-02 -1.5200e-01 -1.3245e-01 -1.3245e-01 -1.7006e-01 8.8666e-01 9.7564e-01 9.4062e-01 9.8432e-01 -1.1963e-01 -1.1963e-01 -1.2130e-01 -1.2267e-01 -1.2267e-01 9.6935e-01 9.5468e-01 9.8245e-01 -3.9937e-02 -3.0853e-02 -3.0853e-02 -3.0853e-02 -1.5395e-01 6.1273e-05 1.3492e-02 0.000 0.000 -0.123 -0.123 0.482 0.969 0.955 1.030 0.985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.507 0.000 -0.132 -0.132 -0.170 -0.170 0.887 0.887 0.979 0.979 0.976 0.976 0.984 0.984 -0.147 -0.147 0.000 0.000 0.280 0.000 0.000 -0.123 -0.123 0.482 0.969 0.955 1.030 0.985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.507 0.000 -0.132 -0.132 -0.170 -0.170 0.887 0.887 0.979 0.979 0.976 0.976 0.984 0.984 -0.147 -0.147 0.000 0.000 0.280 8.754084 8.989648 9.462832 9.909458 6.589644 8.351032 11.830330 7.114735 11.104612 10.473836 10.420927 10.986645 8.881707 7.158091 9.892115 11.895471 10.489479 7.080088 11.680414 NA 10.199029 10.475741 9.039446 5.846330 9.727946 12.610386 10.339570 NA 8.643178 12.253765 10.929406 10.430040 9.930448 10.260550 9.118105 8.062448 7.319554 6.293867 11.488064 5.898847 10.000275 9.071295 9.305697 11.830330 6.018688 11.558745 10.959287 11.171082 10.317962 7.008196 9.701326 7.162828 7.353106 6.337351 10.986645 8.881707 8.174840 9.600161 11.744634 2.080078 7.039446 9.187450 2.495132 8.665051 2.717517 8.615795 12.423644 12.964767 11.433725 6.393979 6.258892 7.755653 9.565694 10.267165 9.832004 6.829026 8.777442 9.654997 10.131146 13.860719 11.846065 9.064981 8.931143 10.201334 10.770474 9.230963 5.817053 9.204784 5.997627 9.368570 5.353108 9.806495 8.768144 11.032344 8.274298 9.318493 10.658356 8.673375 7.984305 11.079462 10.389943 8.256677 7.951822 NA 11.062853 8.671714 8.078735 NA 8.319554 10.466669 TCGA-OR-A5JM 25 1 562 NA stage iv t4 n0 NA 16-10-2014 female yes yes white NA 304.32.0 1 1 NA NA 1 1 2 2 2 2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.0210038 11.2468429 1.4503799 6.7480774 8.4097567 15.0768120 8.6987644 1.1078218 6.8786322 -1.2142402 3.5444978 NA 6.0896549 8.4060949 8.2473546 9.5827259 8.1565625 9.6431953 -0.6099927 NA 10.2220662 4.5137939 8.7386165 7.2897008 0.8038057 8.6822077 NA 0.7858435 10.8258223 3.1078050 4.6508048 8.3950538 5.3708373 9.1749686 7.4863146 6.0432636 6.2288187 11.4115840 -0.2140729 -1.2142402 5.9254274 5.6685191 11.2611019 8.0550020 6.7516592 8.6593191 10.4710620 8.4635947 14.6925061 11.0827914 NA 7.7225132 NA 9.4932344 2.6927619 -1.2142402 11.7017546 11.2638864 4.8082409 9.9356222 10.2747195 4.7166123 -0.2140729 -0.1300497 10.1439769 10.8082430 6.6623921 10.1652536 10.6064531 NA 9.3811326 6.3094363 10.6700457 -0.7599910 1.9557963 5.5540608 8.2696910 12.0361736 NA 7.1032878 -0.2140729 1.3708338 9.0146939 2.5932342 12.6225055 11.8864127 4.5672351 14.8134834 7.4929235 8.0074624 9.6692821 4.4863154 9.2974501 7.3094372 NA 0.3708338 2.3732306 12.6230103 4.9953307 3.8733408 8.6438562 7.9099963 6.5247783 6.4005857 9.9298960 6.5164470 11.5009771 10.0666402 1.7858853 NA 1.9557963 9.8799529 1.1078218 1.3708338 9.9273438 8.4880478 9.9470071 -1.2142402 4.8519639 8.3078483 7.9532932 6.9953285 NA -1.2142402 -0.2140729 10.4767462 11.2311487 6.7225125 7.4476536 8.2350238 12.1963265 8.2696910 13.0602533 9.5573647 10.7458771 1.5932103 14.2402066 7.4583008 10.2857410 8.7458770 9.6219255 10.3708377 13.5102292 3.5407588 11.5723490 11.1134278 11.7567001 3.8302655 1.5932103 2.1077883 6.1867541 9.0074624 8.5474263 6.4244552 4.6187672 4.7400695 7.9855477 10.0993252 NA 4.4005857 9.6890038 8.6282257 3.2866742 6.6800866 NA 3.6927619 10.4001249 4.7631566 8.0827915 9.4088422 7.4152322 9.4369268 1.9557963 7.6623921 -1.2142402 8.2857212 10.7498369 7.3670757 NA -1.2142402 8.5851567 9.5026946 9.0998919 NA 10.7837603 9.8234222 NA 11.1652535 8.1368143 11.1145501 10.7834075 NA 6.5606630 5.4297298 7.9305333 9.3064940 7.8465710 6.2453074 7.5844439 0.00819590 -0.00664320 -0.58363000 -0.65771000 0.00462100 0.53661000 0.00569190 -0.01230000 0.01712400 3.65690000 0.58345000 0.03340800 0.03510000 0.03510000 0.39595000 0.85601000 1.08400000 -0.03626500 -0.03626500 -0.55995000 0.53239000 -0.03721800 -0.02616700 -0.00047523 -0.58363000 0.53661000 1.06630000 -0.60410000 -0.56406000 -0.55987000 0.55460000 0.00791750 0.00791750 0.59332000 0.00194180 0.02258500 0.03510000 0.52258000 0.52258000 -1.21320000 -0.59039000 -1.20440000 0.03735900 0.000 0.555 0.000 0.000 0.531 0.000 0.000 -0.583 -0.564 0.000 0.000 -0.565 0.000 0.000 0.000 0.769 0.000 -0.555 -0.555 -0.499 0.000 -0.508 0.000 0.508 0.000 0.000 0.000 -0.533 -0.533 -0.604 -0.604 0.512 0.000 0.000 0.000 0.548 0.548 -0.560 -0.560 0.000 0.000 0.555 0.000 0.000 0.531 0.000 0.000 -0.583 -0.564 0.000 0.000 -0.565 0.000 0.000 0.000 0.769 0.000 -0.555 -0.555 -0.499 0.000 -0.508 0.000 0.508 0.000 0.000 0.000 -0.533 -0.533 -0.604 -0.604 0.512 0.000 0.000 0.000 0.548 0.548 -0.560 -0.560 0.000 9.737888 9.042084 9.188887 11.507188 1.593210 10.219461 13.431252 8.442300 8.489779 10.060836 10.237086 12.040166 7.891784 3.643856 9.516804 11.954704 8.191017 7.094214 12.371894 4.340463 12.196327 10.528185 8.442300 5.599142 8.847921 12.590712 8.940693 2.486302 8.530709 13.040092 13.137919 10.842713 10.059671 10.478491 9.5681691 9.6677540 5.2288187 9.2936698 11.9392689 2.6927619 9.4351314 10.2621151 10.3094371 13.4312522 9.4224998 10.2432561 11.2594541 12.0695424 9.4405113 6.6987644 10.6795559 11.0352850 8.0804962 8.9314381 12.0401657 7.8917837 8.4895365 8.0338029 11.4340080 NA 8.5205849 7.9904461 11.2819850 5.5802902 -1.2142402 8.0573382 13.0674430 11.6189629 12.0320220 10.0993252 0.3708338 6.4512111 5.5672351 9.1167920 13.2950316 4.9953307 9.1630858 9.2976277 11.1875547 13.6243405 11.8229073 7.0712779 10.1167920 9.8411577 10.6938924 6.2453074 5.2936684 7.7773974 -0.2140729 11.7567001 0.3708338 10.7214086 7.5900061 10.8950529 3.5407588 9.6329325 11.8792928 9.7624393 9.3201780 11.7558013 10.3395045 8.6344982 9.1920802 1.3708338 9.7364748 9.9781680 8.7069870 5.1609162 9.2877124 10.5078288 TCGA-OR-A5JO 26 0 NA 889 stage i t1 n0 NA 16-10-2014 female yes yes white NA 304.32.0 1 4 NA NA 4 3 3 3 3 3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.7832314 11.3542764 4.3936153 9.7238208 5.6957684 16.9614679 10.8185954 6.4683569 10.4880154 0.1107641 3.7083307 NA 8.5946206 7.6499639 8.6806605 9.7609591 6.6265048 10.9335868 NA 10.5110760 9.6314235 5.4506537 4.6957656 7.6265048 -0.8051565 8.8370230 0.6957266 0.1107641 10.8241914 6.8921651 6.1950818 8.6768591 7.0533199 0.6957266 7.6499639 4.2400853 6.5116847 9.6730474 4.2400853 1.1108309 6.7832301 -0.8892359 12.3027894 8.0474430 8.2706761 8.4966673 10.3117035 10.0378421 12.0773085 10.6126421 -0.8892359 3.4327323 NA 9.0866530 2.9181572 NA 12.5681858 9.7365137 1.4327457 8.9903882 10.1929540 3.3587338 1.4327457 NA 9.8514289 7.7690166 6.1108059 9.4088674 10.6141338 NA 11.1407822 9.6314235 10.6976447 NA 2.5702443 5.3006289 8.4100129 13.3289897 -0.8892359 2.4327457 1.9181572 2.5702443 7.4191436 5.2400891 15.7880826 16.3634070 5.7459795 10.1807312 8.7654409 10.0304132 9.9531552 6.1331730 9.7635872 9.9421121 0.6957266 -0.8892359 7.6620132 10.7582634 3.8112449 0.1107641 8.7144313 8.9842490 7.5353913 NA 9.2245470 10.4390086 10.0907873 11.6232713 4.4683552 0.6957266 3.2807337 10.1795832 1.1108309 NA 9.5824802 6.5702367 9.6653938 0.6957266 6.9052209 7.9485588 7.0415420 7.9181596 1.6957712 1.1108309 1.6957712 8.6402355 10.3545739 NA 7.0236945 8.1956134 12.0452330 6.6265048 0.6957266 9.3202583 6.7618570 1.4327457 13.9521727 8.8822943 7.8551681 7.8250504 11.1919554 10.6868168 12.2930440 4.5031197 11.6742395 9.3587325 12.5090142 5.3587338 5.4145855 NA 5.9436940 10.0048647 7.6343667 8.0994898 0.6957266 7.0533199 9.7447082 9.9896221 0.1107641 7.1164292 9.3178191 8.0176954 8.4158634 8.2390571 0.1107641 5.9436940 10.9325788 8.2271490 NA 10.8835319 6.1660867 8.6421864 NA 6.4683569 0.1107641 8.9578624 9.9440587 7.3539787 1.1108309 NA 10.0003088 10.7761408 9.9100865 7.4771268 11.0916585 8.2477961 NA 11.0240684 7.9436952 10.5132841 10.0671810 2.9181572 6.7328566 6.4771268 8.3822678 9.4836699 7.7618564 7.6692259 8.6594533 -1.0307e-03 -1.3862e-04 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9.9043188 8.6557693 5.5201959 6.0880843 12.7606224 6.6806605 10.3208674 9.5031223 9.0809108 11.9191658 9.0620896 12.0456015 9.5586216 10.7977431 7.6615515 10.1185330 9.8378745 3.8656912 6.1220328 7.1853750 9.3634703 8.1359447 6.4054257 9.0010692 10.5365453 0.6957266 6.1660867 8.4945092 1.0443941 8.5412573 5.3396220 6.0994888 10.8382999 11.6333864 12.2775956 7.7438004 NA 5.0649992 10.7209070 10.9273886 10.9574706 6.5201959 9.0191976 9.9788557 11.6133881 14.1831888 12.3181243 9.5946208 10.4896416 9.4417219 11.4105853 7.0415420 4.8112449 8.6006530 9.5031223 12.5090142 5.4858454 10.9617731 9.8640216 10.0048647 6.0880843 10.6538367 11.2497166 9.9625539 7.8112443 12.1295267 11.6896493 9.2048826 9.3396236 NA 10.2304723 9.1164295 8.2137516 NA 8.0650014 10.7102529 TCGA-OR-A5JP 40 0 NA 149 stage ii t2 n0 NA 16-10-2014 male yes yes white NA 304.32.0 1 1 2 4 1 1 1 4 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 4 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 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9.4312512 5.3674549 6.8950142 8.1900760 5.6708460 7.3940665 13.1899406 5.6583572 1.6202110 5.0607953 3.1347959 12.3436378 9.2148118 7.7465566 8.0889901 10.1911605 11.7324740 12.1135028 10.7535464 NA 8.8366201 NA 10.7076834 7.2008829 -1.1870500 12.7315426 10.6548231 5.0607953 9.8240930 10.7279981 3.0607910 1.1348124 -1.1031469 10.5232417 10.7361932 8.4531105 10.1846423 10.0696640 NA 10.2784322 8.0726091 10.9546536 6.3222455 3.7197530 5.0607953 7.9600709 13.5426457 NA 5.0982679 -1.1870500 NA 7.1835530 2.3978303 13.0200928 12.2642224 5.3415944 13.4651561 7.8517846 8.2073282 10.1775476 5.2051813 10.3067862 7.9108975 1.3978030 1.1348124 3.9835956 12.0224714 5.3206616 2.8128678 7.6040283 7.3520249 9.3977437 9.8976741 11.1297129 8.7008784 10.5727539 11.9813780 8.3770153 0.3978030 -0.1872143 7.8896816 1.8128678 4.2051813 10.0332440 7.7815328 10.6866942 1.9828020 5.0796512 7.8195283 10.6402084 6.9877915 0.3978030 5.1347918 2.2722920 9.8558930 8.3597601 NA 7.2640766 8.5793948 10.6121473 4.6955095 13.6329449 8.4349176 9.4910257 4.6708460 14.4565246 9.0866612 9.3741059 8.3674545 10.4706307 11.8186657 12.9985155 2.8128678 12.6412006 11.6003602 13.4665505 5.5543341 6.3978286 0.3978030 7.6677339 8.7815325 8.9122136 7.4546283 5.8352344 6.2222559 8.0536571 9.6007684 NA 5.3978269 8.8936832 8.5046093 4.2494909 8.6261018 3.4567273 5.9727363 11.7522613 8.9865429 6.4201960 10.1632524 9.7443419 11.9694229 NA 7.7107114 4.6708460 8.7858454 10.0993425 6.9575235 5.6583572 -1.1870500 9.8829867 9.7692418 8.1813719 1.8128678 11.0274884 8.3616877 0.3978030 12.8080145 7.4746437 11.4857330 11.3529937 -1.1870500 7.6924488 4.8128678 7.8240932 10.4485838 8.3442471 6.7728675 8.3403428 -0.0029091 0.4880200 -0.1184800 0.0343950 -0.0215100 -0.2196200 -0.0042929 -0.2196100 0.0218840 0.5030700 0.5387200 -0.0103700 0.5217100 0.0073609 0.4074400 0.7566200 0.8307900 0.0533790 -0.0015243 -0.5984700 0.5035900 0.0652260 0.0806010 -0.5218700 -0.5704100 -0.7685100 -0.0193140 -0.0515860 -0.5423900 -0.5423900 0.5345000 0.0000000 0.0000000 0.5030700 -0.5293000 0.5387200 0.0073609 -1.2929000 -0.5457600 0.4935500 -0.5276700 0.0013455 -0.5507600 0.534 0.534 0.000 0.000 0.503 0.503 -0.529 0.539 0.000 0.000 0.000 -0.540 -0.540 -0.528 -0.528 0.831 0.831 0.000 0.000 0.000 0.000 0.000 -0.551 0.216 0.000 -0.519 -0.519 0.000 0.000 0.000 0.000 -0.220 -0.220 -0.162 0.000 0.521 0.521 -0.499 0.000 0.000 0.534 0.534 0.000 0.000 0.503 0.503 -0.529 0.539 0.000 0.000 0.000 -0.540 -0.540 -0.528 -0.528 0.831 0.831 0.000 0.000 0.000 0.000 0.000 -0.551 0.216 0.000 -0.519 -0.519 0.000 0.000 0.000 0.000 -0.220 -0.220 -0.162 0.000 0.521 0.521 -0.499 0.000 0.000 9.092476 9.213745 8.371287 11.628049 4.205181 10.228079 11.407890 8.438574 9.173713 10.181918 9.259949 11.490365 9.879628 8.420196 9.154084 10.402985 8.787280 5.527111 12.572130 6.352024 10.612147 10.236507 8.836620 7.780870 8.232826 12.037772 10.287586 4.134796 8.924001 12.561792 10.987791 11.598400 10.988727 10.564828 9.581646 9.184642 5.427576 6.390295 12.588064 6.088990 10.583942 10.446315 9.237032 11.407890 9.527970 10.552224 10.083996 9.763422 7.677052 5.889680 9.983417 7.434918 8.968949 8.007105 11.490365 9.879628 7.126293 7.442222 12.012845 6.689383 9.728745 9.147139 9.840772 6.002691 2.513314 7.561059 11.658160 12.806158 11.356381 7.695509 5.731729 10.572338 9.490585 10.412779 11.608094 5.620220 8.569422 7.952417 10.237557 14.551116 11.877103 8.012538 10.954015 9.701609 11.002073 6.633045 3.060791 8.014990 4.170414 13.466551 2.134780 11.271272 8.121205 9.160487 6.554333 9.826886 10.830370 9.444952 8.288599 10.954654 9.997741 9.868826 8.815681 5.239131 10.465796 8.670847 8.738376 4.695509 7.017436 10.680531 TCGA-OR-A5JQ 26 0 NA 1103 stage ii t2 n0 NA 16-10-2014 female yes yes white NA 304.32.0 4 5 NA NA 4 4 3 2 3 2 0 0 4 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 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NA 7.3855527 1.9932396 11.7772157 8.8070164 8.3906961 8.6196742 10.0684470 10.3639226 14.0275173 9.5462885 1.6712934 3.1307332 1.2562861 9.6204042 2.6713160 NA 13.1144449 9.8406058 4.8005893 8.6411974 9.7706550 4.0975687 0.9932033 NA 10.5218846 9.0902138 6.0463470 9.2230153 9.7653847 NA 9.8983213 8.8134141 11.3357544 6.7865585 3.8005893 6.9613258 6.6543009 12.0478395 NA 5.3578089 1.9932396 NA 7.2487360 3.7157067 14.5039962 13.6341932 6.4310630 10.0891491 9.1047882 9.2553301 9.9601731 5.3437311 9.3918848 7.5691523 1.4786612 -1.3287972 3.3750672 12.3285139 4.9380929 0.9932033 9.8549425 9.0211413 7.9868643 -1.3287972 11.1376385 10.4276800 10.4657189 11.0582474 5.3151641 0.2562861 0.6712934 10.0598626 1.9932396 3.8412284 9.7252330 8.1142504 10.0343467 10.5886792 6.0806982 8.9797484 7.8928943 7.5073578 NA NA 0.6712934 7.7454484 11.2263755 NA 7.1830597 8.9392642 11.4182412 5.9474324 11.2249364 10.0352556 8.2674969 4.3992258 13.6400639 9.5729283 12.6797865 7.0288586 11.1931529 11.7839095 13.0371511 4.8005893 11.0676443 10.0506855 13.7902887 1.4786612 5.3295183 1.8412486 4.2860162 8.0679119 8.4378361 7.9005348 1.2562861 6.2933594 9.5759417 9.4060168 -1.3287972 6.5961197 8.5214940 7.6684865 6.2367528 9.1445359 -1.3287972 6.0891591 12.6168424 7.6255036 4.2562710 9.6255034 6.5600500 11.8879014 NA 5.8807614 1.2562861 8.2860171 11.1478711 5.9750867 5.9659274 0.6712934 9.7088540 9.6853275 9.7889503 2.9932396 10.0452597 8.8771004 NA 11.5731168 7.8185119 9.9813518 10.6185788 1.8412486 5.9567095 6.0721873 8.3472644 9.2979287 7.0419942 6.9192352 8.7381095 -0.38817 0.52066 0.49234 0.59314 0.59134 -0.40462 -0.40307 0.52363 0.23086 0.58773 -0.39274 0.53415 0.53415 0.53415 0.58291 0.50672 0.50672 0.00000 0.00000 -0.38817 -0.38817 -0.36289 -0.35624 0.57911 0.46047 -0.40462 -0.40307 0.52363 0.27679 0.27679 -0.39252 -0.39308 -0.39308 0.58773 -0.56724 -0.39274 0.53415 0.58291 0.58291 0.58291 -0.40862 0.61788 -0.42963 -0.393 -0.393 -0.393 -0.393 0.588 0.588 -0.567 -0.393 -0.382 0.534 0.534 0.583 0.583 -0.409 -0.409 0.507 0.507 -0.388 -0.388 0.618 0.618 -0.396 -0.430 -0.359 -0.359 0.579 0.579 0.460 0.460 0.593 0.593 -0.405 -0.405 0.524 0.524 0.588 0.588 0.277 0.277 0.000 -0.393 -0.393 -0.393 -0.393 0.588 0.588 -0.567 -0.393 -0.382 0.534 0.534 0.583 0.583 -0.409 -0.409 0.507 0.507 -0.388 -0.388 0.618 0.618 -0.396 -0.430 -0.359 -0.359 0.579 0.579 0.460 0.460 0.593 0.593 -0.405 -0.405 0.524 0.524 0.588 0.588 0.277 0.277 0.000 8.902528 9.933402 9.531618 10.609784 6.890476 8.383834 12.403687 7.721156 10.686722 10.698868 11.563281 10.048518 9.014493 4.578196 9.552750 11.424942 10.136873 7.563091 11.656260 2.993240 11.418241 9.988154 9.109059 9.286541 9.528511 12.799060 9.460841 NA 8.570664 11.829286 12.829838 10.302771 10.659637 9.537813 9.144059 8.817239 5.769338 8.286017 13.342295 9.244954 9.636370 7.945103 9.959020 12.403687 8.700594 12.356494 10.223155 10.738069 8.216272 7.846233 9.685328 3.529284 7.126634 7.907225 10.048518 9.014493 6.875878 5.130737 11.259788 4.028861 4.426198 7.252507 3.715707 7.198784 5.343731 9.600565 11.414669 11.808939 12.409505 8.067912 -0.328616 5.478661 9.441145 9.909115 11.697139 10.227813 8.278638 8.246847 10.475035 13.766622 10.966502 7.607945 9.924564 8.497855 10.438664 7.138913 6.263765 8.628409 6.710226 13.790289 7.465723 10.521494 10.282793 10.291985 4.900128 9.693675 11.541286 9.627683 7.293359 11.683408 11.784398 8.852459 8.200738 NA 10.984785 8.343732 7.823110 11.413195 7.519930 10.249680 TCGA-OR-A5JR 45 0 NA 3688 stage i t1 n0 NA 16-10-2014 male yes yes white NA 304.32.0 2 4 3 6 4 4 3 2 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 4 0 0 0 0 0 4 0 4 0 0 0 0 0 0 0 4 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 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8.5493916 9.1026720 7.1484105 7.2666985 11.4749627 -1.0908029 2.9091394 8.7917897 6.0588944 8.3889270 1.7165081 9.4598935 11.4699570 12.0144003 11.9059731 8.9926260 0.4941596 8.6539804 9.3510532 9.4385771 11.7735262 10.7694576 8.9549061 9.5238563 10.2716383 14.2330457 11.4221339 8.1641753 10.0319746 8.7902605 10.5380478 7.0989711 6.4941083 9.7499246 6.9034999 13.1920902 8.5691424 10.1295249 8.8734875 10.5127730 5.3014633 9.6558205 10.4808992 6.7229277 7.3848804 11.6709056 11.2439785 9.0293844 8.1991653 NA 11.7195535 8.9329009 8.3336697 0.4941596 8.6182302 10.2841861 TCGA-OR-A5JS 65 0 NA 383 stage ii t2 n0 NA 16-10-2014 female yes yes white NA 304.32.0 1 5 1 7 1 1 1 4 2 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 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9.4218641 8.2536887 9.7942571 -0.4345978 3.2092974 7.1653512 9.0850748 8.2128971 NA NA 2.2658869 1.3727850 9.5752671 NA 7.3983281 9.2933590 9.7453476 7.2693418 12.3920863 9.6931749 8.3286507 1.1504297 13.9312141 7.6369008 11.4987732 7.3102719 10.4629058 11.2647940 12.9740336 0.1504297 11.5342852 10.3178191 11.8374850 6.4783279 6.0411729 3.7353597 6.1276807 8.7011477 9.8640739 8.9214503 3.6528995 5.7552642 7.6869718 9.0228194 NA 1.8873693 10.4408039 8.4093595 5.1033550 8.5355588 0.1504297 4.2378620 11.6392453 4.7353651 0.1504297 8.6166473 8.5640290 9.4715775 -1.4344028 6.2449194 1.5654509 9.2484331 11.3745755 6.6739634 6.0890002 -1.4344028 8.3319676 10.7046700 10.0682703 NA 10.8186950 10.0026705 NA 11.4016861 8.0929157 11.4361885 10.3085899 0.5654022 8.0042306 5.8783207 8.3647199 9.9848720 7.8062300 6.2307737 8.0428123 0.0810330 -0.4227600 -1.2929000 0.0044411 3.1067000 0.0715350 -0.2456900 0.0492560 0.0362290 0.0637070 0.0853650 0.0709600 0.0709600 0.0709600 -0.9049500 0.0196430 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9.6410462 9.1956102 11.4582455 14.7110309 11.0715293 8.1860028 10.9608632 8.7461186 10.8297304 7.9261780 8.9395807 8.2365180 6.2457961 12.1847973 5.4415200 10.9906009 9.4033372 10.1755221 3.1827876 8.6090509 10.8394663 10.1674080 8.8632713 11.5235899 10.9371964 9.5970182 10.4060983 NA 10.8210202 8.5848844 8.8525823 4.4198220 9.0636814 10.3223374 TCGA-OR-A5JY 68 1 552 NA stage iv t4 n1 NA 16-10-2014 female yes yes white NA 304.32.0 1 1 4 5 1 1 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 4 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 1 4 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 4 0 0 0 0 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 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11.6868988 4.7452588 1.8410070 1.4259963 7.8211566 11.1376462 NA 6.0406886 NA NA 7.8661563 2.0109588 14.0430587 14.1648442 5.2500672 14.0108298 8.1673338 9.8668485 9.5010127 2.7479029 9.0294200 5.3956044 NA 1.6483734 5.1660084 10.2662327 8.8353702 5.8025241 3.2333359 9.5318877 7.7415816 7.9754433 8.5431896 5.6343929 11.3083294 5.8962985 5.2160551 NA 1.4259963 11.3759616 -1.1590736 7.9258250 10.0140692 8.8799358 10.1025240 8.3975228 5.8633835 9.7049784 8.3428538 8.6739069 NA 3.1629512 -0.1589125 8.3840485 11.1316117 NA 7.2290341 9.8778772 11.8397835 7.6707398 15.4536261 9.5027948 7.3420578 1.1629190 14.1835082 9.4080221 9.4822285 7.1674462 9.8962993 11.6643840 10.7632295 5.9071070 10.6244243 10.4676384 12.4891496 3.2333359 1.4259963 0.4259963 5.7717536 8.7893840 7.4222170 7.4836820 1.8410070 5.1629431 5.6989991 9.8104033 NA 3.9703015 9.9410219 7.8410170 4.8010189 7.8131347 NA 5.5275177 10.6370564 5.9178327 6.1808659 7.7418836 5.3801753 9.6058884 NA 6.7479070 3.9284840 8.7732315 11.5518447 6.8689225 NA -0.1589125 8.9495411 7.8211566 8.0770309 NA 9.9284796 9.2525278 NA 11.2474875 9.0480310 9.9933016 10.3045412 2.0109588 6.5414560 4.3328726 7.7021034 9.0948642 7.6092009 7.2504074 7.2376211 0.0038854 -0.3587400 -0.9139400 1.6764000 0.0332670 0.0530940 -0.4184900 1.4172000 -0.2104800 2.1835000 0.0678050 -0.3469800 -0.2871500 -0.2448100 0.1869200 0.0086135 0.0086135 0.6715900 1.4519000 -0.3338700 -0.1216100 -0.3882800 0.4667300 -0.5179400 -0.9259200 0.0498240 -0.3982600 0.1404300 -0.4650400 -0.4650400 -0.3557800 -0.8297600 0.0000000 2.1835000 -0.5243000 0.4275500 0.2163700 0.0417410 0.0757030 0.0757030 0.0785820 0.0726550 -0.8010300 -0.356 -0.356 -0.376 0.000 0.000 0.000 0.000 -0.364 0.000 -0.304 -0.304 0.000 0.000 -0.374 -0.374 0.000 0.000 -0.122 -0.122 0.000 0.000 -0.402 -0.801 0.000 0.000 -0.391 -0.391 -0.430 -0.430 0.766 0.766 -0.808 -0.808 0.848 0.140 0.000 0.000 -0.313 0.148 -0.325 -0.356 -0.356 -0.376 0.000 0.000 0.000 0.000 -0.364 0.000 -0.304 -0.304 0.000 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9.3045412 10.7542802 6.3879105 4.8182984 8.6627908 4.0109409 12.4891496 2.5414653 10.0382334 8.9258250 10.2963439 0.8410070 9.8268588 10.8300564 6.1808659 10.0853806 12.3408626 11.4584842 9.2651830 8.0308415 -1.1590736 11.7532081 9.1066318 7.8403405 3.3645724 8.1287290 10.3631078 TCGA-OR-A5JZ 60 0 NA 211 stage ii t2 n0 NA 16-10-2014 male yes yes white NA 304.32.0 2 4 4 3 4 4 3 2 3 2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.5958259 11.4152930 -0.5741111 9.5419955 0.4258889 12.8234394 9.8873780 3.0108693 9.4413135 7.4757472 0.4258889 NA 3.5958259 9.9187531 9.0127382 6.9177516 8.2460774 9.3945654 2.1461664 6.7113008 9.6280222 6.1673660 10.5298419 6.0258106 0.4615286 9.4468784 NA 0.4258889 10.1891108 NA 5.2458227 6.4919877 2.9644356 9.8469113 7.0697548 3.7478278 7.5807168 9.4675577 4.4258956 NA 5.2332515 2.0108514 11.2432819 8.0588939 6.3085411 8.0876766 9.3024155 9.5513120 12.3201460 10.0089812 1.7478170 2.0108514 NA 8.5212954 NA NA 13.5017119 10.6206553 7.6206553 9.4825361 8.9317099 5.7657495 0.4258889 6.4279263 10.7187953 6.3207157 9.0552550 9.1924275 10.9107214 NA 10.3632723 7.6595179 10.7624050 2.2778955 0.4258889 8.7701944 5.8688423 12.3588514 3.1263452 7.0912344 0.4258889 NA 7.3859004 4.1807844 15.8834551 16.4694975 5.1036907 9.6460955 7.3267656 9.6832863 9.6292464 3.1263452 8.7066462 6.3916835 NA -0.5741111 2.2352982 11.6583194 -0.5741111 3.5958259 11.3577440 9.2776475 6.9530627 -0.5741111 8.8374094 7.2514294 9.9395669 9.5500199 -0.5741111 1.7478170 0.4258889 9.6304697 1.4258889 -0.5741111 9.5318070 6.4371262 9.4440986 1.4258889 9.6643033 8.6069763 7.1740918 7.3916827 -0.5741111 0.4258889 NA 10.6039408 11.0355390 NA 7.5396404 8.6426442 11.2885359 5.6547162 10.1932554 10.5383380 9.1504124 5.5133613 14.3291684 9.4482662 10.1556212 6.6738263 11.3942053 12.0618433 14.3093532 2.7478170 11.9393794 9.4117404 13.3041410 -0.5741111 4.0108604 0.4258889 0.4258889 6.9336930 8.7228147 7.9881410 NA 3.4259024 7.7020230 9.6243435 NA 9.4343271 10.1932554 7.6690721 NA 9.3666966 NA 3.7478278 12.3913221 5.5958229 0.4258889 8.3085415 7.9957542 9.2170613 NA 5.5551812 2.8853206 7.9533753 11.0688527 5.6926838 NA NA 8.6329127 9.2284149 9.3815484 1.4258889 10.7911273 8.1018554 NA 10.6856417 7.2524469 10.3640078 10.6649003 -0.5741111 8.6157231 5.8853303 8.1572176 10.0202231 6.9804869 5.0983227 7.3847993 0.0000000 -0.0160960 1.9296000 3.1748000 1.7205000 0.0016642 0.0016642 -0.0136770 -0.0258930 1.6889000 -0.0106460 1.6008000 1.4663000 1.4663000 -0.0283700 0.0239870 -0.0209090 0.2345700 0.2345700 -0.0308130 0.0000000 0.0423320 0.0025512 0.0146200 0.0274970 0.0016642 -0.0502860 -0.0136770 -0.0261820 -0.0261820 -0.0363390 -0.0359930 -0.0228200 1.6889000 -0.0091286 0.0148880 1.4663000 -0.0426090 -0.0118870 -0.0283700 -0.0291750 1.6018000 -0.0615550 0.000 0.000 0.000 0.000 1.689 1.689 0.000 0.000 0.000 1.601 1.466 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.602 1.602 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.446 0.000 0.000 0.000 0.000 0.000 1.669 1.669 0.000 0.000 0.235 0.000 0.000 0.000 0.000 1.689 1.689 0.000 0.000 0.000 1.601 1.466 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.602 1.602 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.446 0.000 0.000 0.000 0.000 0.000 1.669 1.669 0.000 0.000 0.235 9.930718 10.019290 9.467558 10.571194 4.783451 10.049780 12.894268 6.702023 9.543542 11.463445 6.180786 7.635352 11.276085 NA 9.384321 11.900365 9.986231 6.575645 12.539641 NA 11.288536 10.304716 8.907698 2.032348 8.813916 12.001438 8.997651 5.818217 8.133258 12.462072 12.462759 10.558880 11.036923 9.538338 9.428714 9.257206 5.835290 7.682060 11.779321 10.128937 10.310832 8.467557 10.621271 12.894268 9.067950 11.821700 10.641856 10.595197 8.635352 8.296263 9.380095 1.010851 6.988140 8.775047 7.635352 11.276085 6.944433 9.157218 10.279988 2.595814 3.126345 8.856351 6.344761 7.126338 1.010851 7.917752 11.799036 12.223965 12.132394 10.134982 7.565450 8.105378 9.029525 10.372805 12.539152 7.200686 9.107137 10.128937 10.220314 14.488155 11.924498 7.774627 10.292405 9.361064 10.885842 7.180786 8.852163 8.919754 6.692685 13.304141 8.781250 9.908706 10.076053 10.555825 2.595814 9.927736 10.972793 3.818217 7.706669 12.300688 10.845859 9.416002 8.286986 NA 11.235317 8.552603 8.077488 3.595826 9.020223 10.792767 TCGA-OR-A5K0 69 0 NA 1029 stage ii t2 n0 NA 16-10-2014 female yes yes white NA 304.32.0 1 1 1 1 1 1 2 2 2 2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.78744683 11.21835968 1.66502887 7.50416988 7.39750094 9.80033209 8.41100458 1.66502887 8.77357475 0.08011186 4.09578099 -0.92002462 3.93806932 9.96538013 9.43983753 8.14078377 6.79433398 10.16202394 NA 1.08011186 10.46648937 4.57194373 6.62698224 5.52303183 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10.483100 13.128915 6.738299 11.770741 10.583417 8.250013 6.884735 9.488418 12.254389 9.779660 NA 8.413243 12.737518 11.401452 10.668432 10.554301 9.605609 8.72574627 8.37470870 3.93806932 7.17585390 13.30159951 1.66502887 8.75251312 10.29197622 9.22602003 11.22474617 7.95353182 10.89106111 10.26105380 11.04406770 6.32801603 9.24499477 10.14348296 6.15690421 7.03428396 7.48036935 3.88744729 9.24876014 6.64918431 10.26620220 11.00081291 NA 2.78052008 8.34921443 5.93806932 5.80800914 -0.92002462 7.90026667 11.74808645 11.92302747 10.53900717 4.57194373 5.05736795 3.40201266 6.23995934 10.31908962 11.89326785 8.10522758 9.01377851 8.56591738 12.32102827 13.95880942 11.66293553 7.74186603 9.80460184 8.13265601 10.37757745 4.66505161 6.64994305 8.20162161 3.40201266 12.99960305 4.93806932 9.47025682 9.20291599 9.27361333 3.08009480 10.47615746 11.07408773 8.83330473 9.40764061 12.03845937 11.53335855 9.71580605 8.26991258 0.08011186 10.31434850 9.43102701 8.37206450 11.39410460 5.41993659 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1.308 1.308 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.289 1.289 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.346 1.346 0.000 0.000 1.340 1.340 1.321 1.321 0.000 0.000 0.292 9.247508 9.911508 9.270904 10.493573 4.975800 9.320329 13.398086 6.877619 9.883955 10.842265 6.966277 9.357229 8.567076 3.535232 8.974565 11.370826 10.449826 6.907781 12.480880 1.727877 9.939760 9.757159 7.548051 6.305604 10.092007 13.159109 8.655650 6.120190 7.442117 12.148622 12.469550 11.180062 10.933666 9.280541 9.1995475 8.3825082 5.4283133 7.0407555 12.8222799 8.4693394 9.7108658 8.5352272 9.5966948 13.3980859 8.2824611 11.8915219 11.6073100 9.9746129 7.8153353 7.1457243 9.6467355 1.7278769 8.0941944 8.3102779 9.3572289 8.5670761 6.7298994 5.6105140 11.3305711 0.7278769 2.5352318 8.2396248 7.5796214 7.6526851 2.0498050 8.4927437 11.3892050 11.8801571 11.7232861 8.2396248 6.0498006 7.6586100 8.9397605 10.1687414 11.6467355 7.4283116 8.8337807 9.0039968 9.9626897 14.7020179 11.3263901 8.9176967 10.3905407 8.8699793 10.9102666 7.3717287 4.2514313 9.0632627 6.9757998 12.5482507 5.0498006 9.8839554 9.9115076 10.4064724 4.9757998 9.4489715 10.9638865 5.5352287 7.9993354 11.6105153 10.9189315 8.9470407 8.1499371 NA 11.3407776 8.6674515 8.1831997 2.5352318 8.4038292 10.0565472 TCGA-OR-A5K2 32 1 994 NA stage iii t4 n0 NA 16-10-2014 female yes yes white NA 304.32.0 1 1 NA NA 1 1 1 4 2 1 0 0 0 0 0 0 0 0 0 4 4 4 0 0 0 0 0 0 0 0 0 0 0 4 0 4 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 4 0 0 0 0 0 4 0 0 0 4 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 1 0 0 4 4 0 0 0 0 4 0 0 0 0 4 4 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 4 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4 4 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 4 0 0 0 0 0 4 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 4 0 0 0 4 0 0 0 0 0 0 0 0 0 0 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0.000 0.000 0.467 0.000 0.428 0.428 0.064 0.519 -0.480 0.869 -0.470 -0.021 -0.309 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCGA-OR-A5KO 39 0 NA 1414 stage iv t4 n0 NA 16-10-2014 female yes yes white not hispanic or latino 304.32.0 4 2 2 2 3 2 1 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 4 4 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 4 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 4 0 0 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10.20507527 2.22835695 2.22835695 1.30152912 10.57221988 9.38419814 9.09502879 8.11101096 8.77680443 NA 10.14782716 9.64284180 11.24656812 1.96303015 3.15437258 7.78602322 8.11101096 12.09580113 1.71378378 0.90642886 1.90642886 0.90642886 8.09131531 3.36587447 14.50745060 14.48745147 5.98111742 12.23218798 8.42760827 6.75818856 10.27221546 3.43000420 8.46732677 5.91766805 NA NA 3.81525776 12.09038528 3.15437258 3.43000420 10.81069815 8.65295429 7.25175601 4.63436093 10.51052970 6.57241526 10.57401264 11.53419485 2.49139136 -0.09357114 -0.09357114 10.24294637 3.43000420 5.52114813 10.66507943 6.72022100 9.58063206 0.90642886 7.74564340 9.26823015 8.36587141 7.59643801 2.22835695 -0.09357114 -1.09357114 8.36587141 10.02862067 -1.09357114 6.55029582 9.04854681 10.48292419 8.39829307 9.66049228 10.07242714 8.64490357 1.90642886 14.29375039 8.39428004 12.36158593 7.25073613 10.92776685 12.04198878 13.01120235 4.68779977 9.74879010 9.99589036 12.53100685 5.38217267 5.86063510 3.36587447 7.90925468 9.80655188 8.69597364 8.31809897 2.49139136 6.55749127 8.26399166 9.12802707 -1.09357114 7.18721052 10.10242718 8.03829680 6.12415441 6.31234752 1.49139136 5.63436093 11.93088696 5.39829222 2.36586048 9.58855668 5.44559760 9.13405584 NA 6.91766685 -1.09357114 7.81032163 10.95002086 6.81333100 3.99390076 4.03572067 9.28039242 9.09626449 7.99124802 NA 10.73695506 9.42115386 1.22835695 11.50588780 8.80125762 10.60036231 12.01496430 -0.09357114 8.03572287 7.13044186 8.58063206 10.02343349 7.82828059 6.31583066 8.75048659 -0.0158790 1.7581000 1.5858000 3.5056000 1.7164000 1.7241000 3.6569000 1.6818000 1.8536000 -0.0692710 1.8640000 1.9669000 1.7182000 3.6569000 -0.0027707 1.8525000 1.8525000 0.6072400 1.0538000 -0.0339260 -0.0694140 -0.0309590 -0.0327230 1.7062000 1.5450000 1.7241000 -0.1840800 1.6706000 1.7443000 1.7303000 -0.0628980 -0.0319050 -0.0628980 -0.0692710 -1.2929000 -0.1542600 1.7709000 0.0000000 0.0000000 -0.0704670 -0.0760120 -0.0532530 -1.2929000 1.646 0.000 0.000 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9.4072818 8.3801454 7.9473324 10.5633115 10.6283934 -1.0935711 3.2987609 8.0738577 5.7683961 8.2215895 NA 9.0574562 12.6273253 12.5678839 11.9532228 7.3158307 0.4913914 6.1638268 8.4819790 10.6688219 9.9426135 6.9007932 9.6301007 8.8751067 10.7997413 13.0308843 10.9667980 7.5753244 9.2507357 10.2181882 10.6918923 7.1110115 7.3617675 9.5303213 2.9939098 12.5310068 4.4610308 10.1195441 8.2944572 6.3493830 6.2010614 9.9945656 10.7012618 8.4705893 8.6546328 10.7424902 10.0568218 8.4358702 9.1767352 NA 11.1346693 9.1340558 8.6884717 2.4913914 9.0110385 10.4047904 TCGA-OR-A5KP 45 0 NA 2777 stage ii t2 n0 NA 16-10-2014 female yes yes white not hispanic or latino 313.27.0 1 NA NA NA NA NA NA NA NA NA 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 4 0 0 0 4 0 0 0 0 4 0 0 0 4 0 0 0 0 0 0 0 4 0 0 0 2 0 5 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 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11.668728 12.048959 9.569171 10.401642 9.248785 10.306442 8.918571 7.326428 4.775614 12.188424 6.750079 10.519207 10.436078 9.260136 12.279369 8.593775 11.680604 11.307933 10.616474 9.488653 7.051247 9.549128 9.978210 6.998006 7.087790 8.046011 9.458423 8.263388 8.287019 10.169737 -1.057392 4.497312 8.870501 3.112650 7.356351 -1.057392 9.936369 12.706765 12.566147 10.699696 7.209510 NA 6.825366 9.851866 10.605391 11.708216 7.117648 10.452993 9.363736 10.815013 14.634957 12.408672 7.512579 10.053859 10.757305 10.938490 8.404202 3.849609 9.196570 4.466288 12.126203 4.942721 10.469222 7.931408 10.606726 4.466288 10.020427 9.165518 9.259005 7.876414 10.077149 9.589282 9.257873 9.600934 2.527696 11.773353 9.409309 8.300539 10.754098 8.591979 11.140554 TCGA-OR-A5LP 37 0 NA 1857 stage ii t2 n0 NA 16-10-2014 female yes yes NA NA 304.32.0 2 5 3 3 4 4 3 2 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 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3.0659858 8.1218417 5.8733432 2.6254108 6.2937953 11.5174166 9.0238544 -0.1819675 6.4253922 3.5184974 12.2688856 7.9028695 6.9678084 8.7766136 9.9265855 10.5357375 12.5453391 10.1235528 2.9055242 2.1399933 1.6254108 10.2417022 3.9055242 NA 13.6257178 10.7219429 7.4869460 8.9026703 9.6310404 5.6884266 2.7249558 1.7268748 10.9636748 8.3917080 6.6698106 9.3591576 10.5357375 NA 9.7664282 9.4020839 12.5122012 2.6171574 2.2774790 8.4528721 6.6760417 12.8704593 NA 3.7722552 3.2103733 0.8180325 7.5357373 4.9678096 14.3801731 14.0930983 4.9213506 9.7638121 8.5559676 8.7664282 9.0311652 5.3099147 8.8871886 7.2815851 0.4030495 2.7249558 2.8207712 10.9256050 3.9055242 2.5185100 11.8320815 10.3707301 7.8729906 NA 9.9114786 8.8230678 10.2973007 12.0882103 4.9473435 -0.1819675 1.1399933 10.2854016 9.2242661 2.9879938 9.9942342 7.7896047 9.6775958 9.3649554 7.1887481 9.0798503 7.1843835 5.1399892 NA 0.4030495 0.8180325 10.7369243 10.3528502 -1.1818039 7.1034630 9.4851726 11.4833970 4.8404280 7.2897358 10.0999910 8.7582865 6.1399892 13.3252362 9.3099142 11.2898074 6.7487980 10.8024794 11.6167353 13.2673387 3.6254108 11.6702004 10.7177956 13.1919457 2.7249558 6.1126814 3.6254108 5.3099147 8.6092238 7.9954806 7.9239698 1.9879757 5.7007033 8.7722575 9.2826068 NA 9.4030235 9.9703459 7.3688076 3.7099633 9.1813526 NA 5.9979698 11.7965927 7.1843835 2.5185100 9.4771651 7.8868391 12.2857939 NA 5.6509512 3.2103733 8.0372296 10.6123104 5.5459807 3.6760417 -0.1819675 8.4437699 9.6026959 9.7264537 4.6760417 10.8875108 8.9550521 NA 12.2525589 8.4290857 10.4700097 9.8074556 2.8180529 7.1489778 7.4327707 7.5425746 9.8425081 7.7751632 6.6124764 8.9465967 -0.0018014 -0.0776110 0.0173950 1.1908000 1.1912000 -0.0033243 -0.0033243 1.1436000 -0.0190080 1.1223000 -0.0105080 1.0356000 1.0356000 1.0356000 -0.0538810 0.9820400 0.9820400 0.2291600 0.2291600 -0.0018014 -0.0018014 0.0244080 0.0266420 0.0038854 0.0173950 -0.0033243 -0.0033243 1.1436000 -0.0029091 -0.0029091 -0.0172540 -0.0135400 -0.0135400 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6.921348 12.575451 12.279721 10.086603 8.146736 6.856979 9.627829 3.625411 6.309915 7.601747 8.169000 7.618961 6.904568 7.261004 11.459887 2.403022 3.862451 7.572949 4.027517 7.490487 4.065986 9.407712 12.113543 12.177811 11.235122 7.376481 4.139985 6.605964 9.629436 9.888182 11.899544 11.291259 9.270302 9.252689 10.598601 14.476719 12.048382 8.184383 9.653322 8.802480 10.720059 7.218940 6.921348 9.533165 6.612476 13.191946 8.925278 10.231689 9.364955 10.447873 5.572947 9.620812 10.296325 6.341623 6.992987 11.928218 11.035110 8.569605 7.859720 NA 11.918605 9.293794 8.139741 5.818061 8.639835 10.589551 TCGA-OR-A5LR 30 0 NA 853 stage ii t2 n0 NA 16-10-2014 female yes yes NA NA 304.32.0 2 5 NA NA 4 4 3 2 3 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 4 4 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 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10.8063845 12.9444946 9.8090785 0.7429548 2.9129181 NA 8.8277978 3.8304480 1.3279747 13.7704635 10.5719192 7.7087735 8.8876477 8.8171308 3.7429871 4.1353050 0.8473556 10.5390290 8.3686981 7.9861634 10.1555593 10.8124392 NA 9.2448267 8.3540144 10.4836135 1.7501777 1.3279747 9.3185286 5.7429898 11.8892398 -0.2570452 8.6796272 2.9129181 0.7429548 7.5821932 3.2024177 15.3182917 15.5117356 4.6831574 10.1229309 6.5243490 9.9041213 9.8876476 5.8927359 9.1464915 8.4364763 NA -0.2570452 0.7501777 11.4299275 4.2024177 1.7429979 10.7080521 9.4399570 7.6925827 NA 8.8825407 7.4684579 10.0156191 9.2348426 4.6009714 2.0649173 -0.2570452 9.3082439 NA 6.8410221 9.6618525 7.5631680 9.5422710 1.3279747 9.0828393 8.6343174 8.2898838 7.5947381 3.9129181 -0.2570452 NA 10.3493946 10.1661053 NA 7.6195062 8.6971858 10.1342330 5.7429898 7.2898843 10.3704412 8.7288314 3.6498798 14.0984093 9.2821481 9.9155420 6.2507835 11.4717602 11.7443976 13.6758500 2.0649173 11.6480002 10.2626257 13.2382198 3.6498798 1.3279747 -0.2570452 5.1005404 7.6678020 8.1438689 8.5947385 0.7429548 6.1005404 7.9328142 9.6118120 -0.2570452 9.0260777 9.7722766 7.9909169 3.3327509 8.4503832 -0.2570452 5.8927359 12.6485644 6.0649173 -0.2570452 9.0399055 7.8619306 9.9078964 NA 6.3868454 -0.2570452 8.2547419 10.5227087 5.6009714 2.9129181 -0.2570452 8.5045405 8.8619306 9.3447602 NA 10.9861634 8.2146645 NA 10.8291256 7.7653571 10.5078609 11.3980728 -0.2570452 8.4224693 6.4844556 8.2975785 9.7359278 6.7542168 6.3279514 8.0917173 -0.00055444 0.00000000 0.00000000 1.57460000 1.60650000 0.00013863 0.00013863 -0.01684100 -0.01161100 1.54180000 -0.00926660 1.52320000 1.52320000 1.52320000 0.00152550 0.01740400 0.01740400 0.28137000 0.28137000 -0.00055444 -0.00055444 0.01530800 0.01530800 0.00444110 0.00000000 0.00013863 -0.03172500 -0.01684100 -0.01161100 -0.01161100 -0.01697900 -0.02425100 -0.02425100 1.54180000 -0.00193990 -0.00926660 1.52320000 0.00152550 0.00152550 0.00152550 0.03129500 1.49140000 -0.02821800 0.000 0.000 0.000 0.000 1.542 1.542 0.000 0.000 0.000 1.523 1.523 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.491 1.491 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.575 1.575 0.000 0.000 0.000 0.000 1.529 1.529 0.000 0.000 0.281 0.000 0.000 0.000 0.000 1.542 1.542 0.000 0.000 0.000 1.523 1.523 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.491 1.491 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.575 1.575 0.000 0.000 0.000 0.000 1.529 1.529 0.000 0.000 0.281 9.744398 9.543889 10.121284 10.562370 5.357700 9.643856 12.866787 7.160842 9.909153 11.036461 8.357699 8.202421 8.950004 6.841022 9.195416 12.165317 10.495370 6.470909 12.505994 2.064917 10.134233 10.480237 9.152380 8.535487 9.374166 12.051044 9.078380 NA 8.210595 12.301171 12.032432 10.623973 11.508275 9.289884 9.4372777 8.7316741 5.4434276 6.7764120 12.6722478 9.1502571 9.5631684 9.3279518 9.9475605 12.8667875 8.1136765 11.4932777 10.7555301 10.1201999 7.8825410 8.2227698 9.8331018 5.5503435 7.0828399 8.7130954 8.2024212 8.9500038 6.7554458 7.0739059 10.8502065 -0.2570452 4.0649173 8.6468712 6.8515142 6.7542168 2.0649173 7.9956547 11.3061857 11.9334314 12.1369161 9.7777884 6.3429014 7.6913569 9.4189464 10.2126312 12.0601193 5.9328147 8.9885421 9.5519535 11.0364610 14.3476584 11.8738817 8.2782650 10.1848960 8.9328139 11.2699776 7.4572348 8.6707674 8.3128448 5.5243490 13.2382198 7.7202696 10.1093116 9.6942741 10.1838585 5.1005404 9.8211402 10.8475881 6.7873841 8.0739064 11.6094956 10.9172909 9.0191139 8.4810817 NA 11.4190302 8.4776992 8.0783798 3.8304480 9.3429023 10.5471204 TCGA-OR-A5LS 34 0 NA 1096 stage ii t2 n0 NA 16-10-2014 female yes yes NA NA 304.32.0 3 3 1 1 2 2 1 4 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.7983014 11.3185177 3.7503492 7.7898883 7.1596504 11.5707300 10.2256380 6.2965327 10.0495765 4.9304062 3.1389946 3.2459063 5.2714406 10.4391010 8.2777556 8.4553601 8.7354680 10.8094842 1.7604765 -0.5614942 10.4300735 5.3211957 8.0751764 10.0523412 2.4547023 9.1407242 NA 2.8979761 10.9576964 1.0235392 5.6898918 8.0931878 7.2740967 10.1424552 8.4581425 4.0824046 7.3211948 11.5157012 3.1389946 3.5260187 7.5260148 6.6769570 13.2092156 9.9931405 8.1698709 9.2050806 10.3181349 2.7604765 12.8809717 9.8114168 NA 7.5046410 NA 9.3166026 3.3454390 -0.5614942 13.0989933 11.6637591 7.0679086 9.3257723 9.6661675 4.4829451 0.4385058 2.0801119 9.5378994 8.8773437 7.7872797 10.1976075 9.5857565 -0.5614942 10.0036537 7.7694683 11.0774400 3.3616982 5.1389905 7.4719743 7.7694683 11.5233600 1.0235392 1.0235392 NA 1.7604765 8.4243935 5.1389905 11.5106641 12.6398639 5.8404557 13.2862580 9.2408257 8.2362132 8.6034587 2.8979761 9.2656404 6.3810670 -0.5614942 2.0235038 2.9019192 12.7333160 4.4385524 3.3454390 11.3473196 10.0131452 8.7337695 6.6283755 11.4958665 7.6967881 12.1766291 11.4532696 6.2459063 0.4385058 -0.5614942 10.0596877 2.0235038 5.6283770 9.4692187 6.9304050 9.7750583 -0.5614942 1.0235392 9.2936848 7.8222560 7.9183320 NA 1.4385590 3.0235215 8.0272663 10.0578546 3.9621140 7.5365837 9.2651002 10.9709076 7.0084073 15.2429096 9.1984399 9.2385132 1.7604765 13.1707191 8.7806264 11.1360406 7.2651002 10.8141342 12.1517233 12.2233910 2.8979761 11.2726276 10.2753910 12.8029599 4.4385524 4.3454390 3.5260187 6.7146755 8.5233600 8.4581425 8.5933698 4.4829451 5.6480052 8.2840417 9.3898363 1.4385590 3.9621140 9.9892984 7.5678344 -0.2510236 6.5839237 NA 2.7604765 12.6648133 5.7053393 -0.5614942 10.6852923 6.3454425 6.6959395 3.9621140 6.2840421 0.4385058 8.2166290 9.3027378 5.1389905 2.2459215 1.0235392 8.4609195 10.1180317 9.8015913 NA 9.5019333 9.0660854 NA 13.0458820 8.3027376 10.1942739 9.9747989 NA 7.5678344 6.5882994 7.2840421 9.7308733 8.3514411 6.6959395 8.6315347 -0.52348 0.75108 -0.54118 0.77753 2.14120 -0.54421 -0.54421 0.74613 0.74670 0.73038 0.74784 0.67715 0.73076 0.73076 -0.54017 0.65656 0.65656 0.00000 0.00000 -0.52348 0.75036 -0.48575 -0.47965 -0.53287 -0.49986 -0.54421 -0.54421 0.75605 0.74670 0.74670 0.74290 -0.52164 -0.52882 0.73038 -1.12330 -0.70334 0.73076 -0.54017 -0.54017 -0.54017 -0.52061 0.12344 -1.29290 0.743 0.743 -0.522 -0.522 0.730 0.730 -1.123 0.754 -0.526 0.731 0.731 -0.540 -0.540 -0.521 -0.521 0.657 0.657 -0.523 0.226 0.123 0.123 0.764 -0.535 -0.486 -0.486 -0.548 0.210 0.751 0.751 2.141 2.141 -0.544 -0.544 0.746 0.746 -0.536 -0.536 0.747 0.747 0.000 0.743 0.743 -0.522 -0.522 0.730 0.730 -1.123 0.754 -0.526 0.731 0.731 -0.540 -0.540 -0.521 -0.521 0.657 0.657 -0.523 0.226 0.123 0.123 0.764 -0.535 -0.486 -0.486 -0.548 0.210 0.751 0.751 2.141 2.141 -0.544 -0.544 0.746 0.746 -0.536 -0.536 0.747 0.747 0.000 7.9142853 9.3409267 9.0532615 10.5372418 4.7961045 8.6959395 11.4469803 7.2965327 10.5774634 10.8436931 10.0651734 8.5496873 7.8731802 3.7604765 9.2826768 11.1842260 10.7834023 10.3854579 11.8907929 4.4829451 10.9709076 10.8200946 8.0272663 6.3073119 9.1850660 12.2990567 9.8679584 0.4385058 8.4938342 12.4892506 10.8452881 10.6232411 10.9020761 10.0815059 10.303921 8.908194 7.166472 6.308916 11.912004 8.027266 10.826031 9.236213 9.710015 11.446980 7.541839 11.349569 10.078507 10.511354 9.379599 6.460919 9.593370 9.279330 7.657720 7.110057 8.549687 7.873180 7.902485 8.707678 11.781182 2.897976 5.667370 8.107437 5.914285 7.593369 NA 9.994099 12.482946 12.247516 11.873440 7.145911 1.023539 6.008406 9.636997 10.432198 11.865078 6.985446 8.860616 8.771707 11.401809 13.747104 11.252734 7.200103 10.207563 11.222368 11.317752 6.897983 3.245906 8.693580 4.082405 12.802960 6.847943 10.954744 7.864816 9.519369 8.299638 9.581590 10.017868 9.557493 8.746891 10.809239 9.983516 9.291861 9.231342 NA 10.807696 8.950304 9.464148 1.438559 7.809239 10.781182 TCGA-OR-A5LT 57 0 NA 549 stage iii t3 n0 NA 16-10-2014 male yes yes NA NA 304.32.0 4 2 2 6 4 4 3 3 3 3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.2739065 11.0270315 1.2463473 7.1455766 3.3510770 9.1797399 7.7940181 1.3510629 9.6116019 6.6364767 4.7898127 NA 8.0234999 10.4258939 7.8050312 8.5309837 6.4940331 10.2388230 0.8704239 NA 10.3566990 4.3510770 9.5392511 6.1059630 2.3534644 9.7773392 NA 2.0880398 11.0772926 -0.2339562 7.8904400 6.2896740 2.3510629 7.5990023 6.7547967 5.3207013 7.0789951 11.4816450 4.0880398 NA 4.8953947 NA 10.4639483 9.2377872 8.7829203 9.4420689 10.3844974 7.6487552 12.6135530 10.3033303 1.7661287 -0.2339562 NA 9.9171284 1.3510629 2.0880398 13.1440003 10.8070866 4.7203058 8.3623016 9.9018213 3.4665488 4.3510770 NA 11.8362329 8.1712534 8.4207481 9.1059619 9.0092859 NA 9.7647024 8.5990019 10.0902925 7.0092856 4.9360348 NA 6.3954690 12.0000311 NA 5.3207013 NA -0.2339562 9.7056911 2.3510629 14.9351757 13.4767139 6.6482655 10.0349229 9.8253212 8.4526123 9.5159815 5.0140383 8.7800207 3.4665488 NA NA 2.0909212 11.8989330 7.9804309 4.3654266 10.5276632 9.2798394 7.6909248 NA 11.6399405 8.6861374 10.4171636 11.7720873 2.3510629 -0.2339562 0.7661287 10.6240929 -0.2339562 3.0880398 9.4923301 6.4243242 9.0744508 9.9031031 4.6240950 8.7376553 8.0328987 7.7433918 NA -0.2339562 NA 6.8213939 11.1659239 NA 5.4099679 7.9158591 10.0869124 7.4665513 4.8105048 9.3491947 7.6669788 3.4665488 12.8350581 8.7376553 11.8978242 7.4803572 10.1137333 11.4743337 12.6724389 5.5734654 11.1535908 10.1913279 13.4532689 0.7661287 2.9360443 -0.2339562 7.8105061 7.3435411 8.3918210 8.6463690 -0.2339562 3.8535765 8.0925415 9.5042042 NA 3.8535765 9.4063568 7.2499279 9.1835426 7.6422604 NA 4.0880398 10.8050309 5.7884795 NA 10.2549563 5.4099679 9.4473505 -0.2339562 6.4099679 2.5734715 8.5309837 11.7954130 4.9755660 5.4665521 1.3510629 9.2357539 9.3473124 9.5589022 NA 10.4526124 8.5958348 NA 11.4910521 7.2499279 10.0128526 11.2479114 1.7661287 6.9755648 6.8322014 7.4734712 9.1776228 7.6302984 5.7433911 9.1476550 -0.087826 2.776600 0.872060 3.656900 1.717000 -0.109410 -0.092097 -0.109560 1.747900 1.760100 -0.119410 0.778270 0.778270 0.778270 1.551600 1.587500 1.587500 0.457490 0.489580 -0.168280 -0.013468 -0.031597 -0.020017 0.249470 0.872060 -0.109410 -0.092097 -0.108820 1.776600 1.747900 0.760150 -0.101370 -0.094604 1.760100 -0.088523 -0.102380 0.778270 1.551600 1.551600 1.551600 -0.106460 1.734900 -0.173620 0.760 0.760 0.000 0.000 1.760 1.760 0.000 -0.102 -0.121 0.778 0.778 1.552 1.552 -0.106 -0.106 1.478 1.478 0.000 0.000 1.735 1.735 0.000 -0.174 0.000 0.000 0.826 0.826 2.727 0.872 3.657 3.657 -0.109 -0.109 -0.110 -0.110 0.000 0.000 1.748 1.748 0.490 0.760 0.760 0.000 0.000 1.760 1.760 0.000 -0.102 -0.121 0.778 0.778 1.552 1.552 -0.106 -0.106 1.478 1.478 0.000 0.000 1.735 1.735 0.000 -0.174 0.000 0.000 0.826 0.826 2.727 0.872 3.657 3.657 -0.109 -0.109 -0.110 -0.110 0.000 0.000 1.748 1.748 0.490 9.123664 8.950987 9.537601 10.826808 4.624095 8.941038 11.997633 8.114840 10.585493 9.934784 8.420748 6.225543 8.866774 1.766129 9.783366 11.461775 12.604528 6.965784 12.237533 5.051516 10.086912 10.043399 9.832201 9.606386 8.799535 11.448229 9.579893 9.986490 9.219382 12.193949 13.732257 10.405833 10.599002 11.072174 9.646507 9.411770 4.573465 8.586291 13.339286 8.510946 10.681991 8.714479 10.072174 11.997633 9.021140 10.532641 10.963120 9.842927 8.731896 7.754797 9.741960 2.573471 6.351075 7.564162 6.225543 8.866774 7.027925 10.142237 10.460470 2.088040 5.051516 7.815960 4.624095 5.895395 NA 7.534296 12.038450 11.674505 11.859199 9.099267 6.225543 6.507579 8.799535 9.942285 11.987699 8.734779 8.864144 8.162717 12.216808 14.481538 11.027619 6.648754 9.576683 8.494032 11.210609 6.351075 9.186072 8.289674 3.466549 13.453269 6.335967 10.672251 10.140065 10.832874 2.936044 9.380822 11.490199 3.573471 7.487211 11.848594 11.466985 9.088040 8.507579 NA 10.117051 9.245892 8.782753 NA 7.373442 10.523502 TCGA-OU-A5PI 53 0 NA 709 stage iv t2 n1 NA 16-10-2014 female yes yes white not hispanic or latino 304.32.0 3 3 4 8 2 2 1 5 1 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.8845796 11.9647558 NA 9.0144373 7.1723445 12.8252961 8.6812043 3.3592822 7.5556735 6.6405616 2.7850902 0.1894134 6.1082150 10.4956009 8.8932548 8.8564629 8.6135177 10.3060721 1.7743338 1.1893502 10.1259891 5.7285110 8.5269733 7.7966815 2.2161444 9.8457761 -0.8107131 1.5112656 10.0574021 NA 6.9992796 7.8828380 5.7926810 6.8897911 7.6198040 2.3592681 7.9542231 11.4283530 6.2661662 1.1893502 7.7246264 3.5112783 11.9383826 9.9805142 7.6239795 9.7506392 11.0317016 11.7499229 13.2104162 10.3605280 -0.8107131 7.7168284 2.8897850 9.4931319 0.7743338 NA 13.8882729 10.7168283 6.5292010 9.7458573 8.3914752 3.4372810 4.4372810 0.2459824 8.4109385 6.8546876 6.6650843 9.7080044 9.1751932 3.2768093 10.4295463 9.8377088 11.4437894 4.4380400 5.2337462 7.3692606 8.4109385 11.4564305 0.7743338 3.8332038 0.7743338 0.7743338 7.8475629 6.3592769 13.0989519 13.0450179 4.3890229 13.7758041 7.3336527 8.9723495 10.2959142 3.6487875 8.4555286 6.2768149 NA NA 0.7791336 12.1048572 5.5469037 2.1893502 12.0180828 8.9189720 8.2107756 5.7129121 11.1182397 8.5228867 10.8988400 11.1471788 6.3592769 3.6487875 0.1894134 9.6050930 2.3592681 5.6156164 10.8012982 6.4372793 9.7001154 3.7743127 6.0222413 9.3046030 8.6812043 7.8223465 NA 1.7743338 0.7743338 8.3237776 9.8573498 NA 7.0285548 9.0902180 11.1500773 6.9308177 13.0223401 9.0871968 7.2729367 0.1894134 12.3838003 8.0063351 11.7121559 7.0285548 9.6931770 12.0767623 12.8209831 3.7743127 11.0508259 9.5654767 12.6504469 3.0962450 4.2768167 4.7743127 6.0841685 7.9442388 7.8404028 9.8407797 4.3592752 5.2554403 8.6872031 9.0143101 NA 3.4372810 9.3630285 7.3030930 6.5173088 9.0681532 1.5112656 4.6156164 11.7841424 6.0095308 NA 9.3365561 6.5469037 8.4839721 -0.8107131 6.7129135 3.3592822 7.8932548 10.6673068 4.3186350 5.6322944 1.9967141 8.3441694 9.3043949 10.4133529 NA 10.0293423 9.0158998 NA 11.9735771 8.3816442 10.1311325 9.7985300 1.7743338 8.2172574 6.7743140 7.1837048 10.5084589 8.0962418 6.5987419 7.9719889 -0.544620 0.725650 0.591340 0.672520 1.971800 -0.572190 -0.582560 0.666410 0.669370 0.652590 2.034000 0.660140 1.858700 0.754140 -0.534190 1.806300 0.631890 0.000000 0.008892 -0.544620 -0.544620 -0.514450 -0.514450 0.662900 0.644140 -0.561470 -0.582560 0.681610 0.669370 0.669370 0.677340 -0.550660 -0.541380 0.652590 -0.562160 0.664200 0.695520 -0.526850 -0.526850 -0.551160 -1.292900 0.545410 -0.551260 0.677 0.677 -0.551 -0.551 0.653 0.653 -0.562 0.664 -0.542 0.657 0.657 -0.527 -0.527 -0.552 -0.552 0.645 0.645 -0.545 -0.545 -0.480 0.233 0.687 -0.551 -0.514 -0.514 0.109 0.684 0.639 0.639 1.967 1.967 -0.572 -0.572 0.666 0.666 -0.575 -0.575 0.669 0.669 0.000 0.677 0.677 -0.551 -0.551 0.653 0.653 -0.562 0.664 -0.542 0.657 0.657 -0.527 -0.527 -0.552 -0.552 0.645 0.645 -0.545 -0.545 -0.480 0.233 0.687 -0.551 -0.514 -0.514 0.109 0.684 0.639 0.639 1.967 1.967 -0.572 -0.572 0.666 0.666 -0.575 -0.575 0.669 0.669 0.000 8.8932548 9.6971459 8.8564629 11.5872932 5.9575362 8.7343157 11.5814003 7.8150598 9.9350256 11.3298615 10.5870259 10.0902180 8.3466981 6.3289029 9.8544118 12.3479609 9.1851185 9.3378279 12.1415465 1.5112656 11.1500773 11.1259892 8.6281429 8.7861187 9.4012396 12.5936945 10.0841690 0.1894134 8.2473432 12.0397335 11.8710289 10.4937083 10.9329234 9.8546872 10.115647 8.993482 7.328903 5.728511 12.064717 7.693177 10.561128 9.563304 9.598742 11.581400 7.015900 11.596619 12.204379 10.610890 9.012718 8.217257 9.591297 10.604565 7.465476 6.718782 10.090218 8.346698 7.738212 9.911305 10.687702 2.511291 7.102240 7.568730 4.774313 6.937544 NA 10.286725 12.128747 11.984782 11.963315 7.732383 4.615616 5.143549 9.475909 10.741059 11.269836 7.451446 9.134795 8.804061 11.514938 13.734497 12.396366 6.861777 9.867951 10.228956 10.884144 6.632294 4.474754 8.271500 4.648782 12.650447 6.681205 11.044609 8.646732 9.994289 8.753501 7.047332 9.861777 9.041100 8.406097 11.705544 10.635401 10.195677 9.522507 1.189350 10.769223 8.792978 9.349727 5.889790 7.585956 10.925330 TCGA-P6-A5OF 55 1 207 NA stage iii t4 n0 NA 16-10-2014 female yes yes white not hispanic or latino 304.32.0 NA 3 NA NA 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 7 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 7 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 4 0 0 0 0 0 0 0 0 0 1.387111e-06 1.109689e-06 6.5464145 11.3276646 1.2257068 7.6792739 5.7116381 14.5388731 9.7806157 4.9123337 8.9572962 4.4784347 3.2986143 NA 6.4137328 9.8706528 8.6994736 8.7902061 8.1924423 9.9872724 2.4425720 2.3459924 10.6459000 6.1293634 8.1513596 8.4657268 1.2894214 9.2030115 2.2305105 2.5524263 10.9170108 0.2304490 7.0288200 7.7902058 4.2305105 9.7290272 7.4004355 4.3459853 6.6455475 11.0349103 2.6455403 2.1049740 6.4399638 3.9309454 12.8262340 8.7683759 8.2058807 9.5396076 10.8079392 10.3970919 13.0920458 10.8003660 1.2305105 3.5035268 NA 9.9344139 -0.3543906 NA 13.4863749 10.7975157 5.9584298 9.8415351 9.9111629 1.8154525 2.8154730 1.8919635 8.8427645 9.9753442 8.6170913 10.2943548 9.1827663 -1.3543906 10.4070991 9.6532759 10.8677390 5.8975502 3.9309454 7.7008302 8.8129660 12.6294321 -0.3543906 3.5524386 NA -1.3543906 8.3001837 4.8743642 13.5010305 13.1819390 5.0073166 12.9331773 8.3177608 9.3819497 10.2272192 5.1049782 8.4265306 6.3937405 1.6455633 -0.3543906 3.0419789 12.2204961 4.5524386 4.2894066 10.5467918 8.5733257 8.4185222 7.7089432 11.3201815 7.3935054 10.6950016 11.4819829 0.9674638 0.6455172 0.2304490 10.4851453 2.2305105 5.2154029 9.9418905 5.9942765 7.8279422 4.7330126 7.6399014 8.5589908 9.4488718 7.3179733 -1.3543906 1.4529117 1.9674638 10.3507482 10.1558175 NA 6.8501193 9.3153187 10.8946613 7.3494511 11.5135987 9.7651374 8.3914069 2.6455403 14.2554191 9.1029287 11.5491680 7.3802576 10.9496139 11.6002894 13.4407251 4.5524386 11.0235717 10.5913574 12.8502718 3.7330072 3.4004286 4.0030985 7.5464145 9.6727626 8.3529068 8.6551246 1.8154525 6.2602572 8.0008991 9.3563542 NA 5.5997433 9.8403048 7.3320482 6.1211999 9.2164471 2.3459924 4.7116381 11.3920621 5.8647161 3.1691072 10.2703433 8.1769291 8.9663483 0.9674638 6.5159127 2.9674822 7.6953960 11.4327321 4.6455460 2.8934787 3.1049740 9.2210870 9.4318174 10.0905626 NA 11.1941290 8.4170373 1.8154525 11.8375323 7.9123343 10.1996570 11.1742461 1.6455633 7.4689148 6.3250284 8.6844667 10.3721918 7.7035396 6.8982132 8.5539406 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.311772 10.161248 9.058118 11.113917 5.303759 10.241272 11.708437 8.113154 9.649768 10.964091 10.389120 11.396673 8.933260 3.503527 9.874060 11.736653 8.710291 7.852562 12.154085 5.037865 10.894661 10.672417 8.772252 9.891404 9.347721 13.038938 10.152847 1.452912 9.330296 12.764165 12.746046 11.239623 11.081739 9.728362 10.210174 9.127347 6.845220 6.303759 13.251953 8.651172 10.244996 10.049093 9.659568 11.708437 8.090563 12.014736 10.587432 10.049625 8.282172 7.777405 9.669995 7.605550 6.695397 7.561188 11.396673 8.933260 6.888865 8.460931 10.341211 2.104974 5.121281 8.273082 5.478438 7.651172 1.230510 9.392062 12.488782 11.971275 11.876469 7.314433 2.733007 7.576286 9.407930 9.944756 11.344686 6.667916 9.736983 9.052816 11.485145 13.915989 11.683609 8.423625 9.528955 10.222032 10.876469 7.356354 4.985396 9.428546 4.230510 12.850272 7.475271 11.091339 9.106004 11.195333 7.484752 9.954456 10.030332 7.976464 8.891100 11.680003 10.635652 9.534291 8.850119 1.815452 10.714927 8.893475 8.344166 8.472096 8.241738 10.524748 TCGA-P6-A5OG 45 1 383 NA stage iv t4 n0 NA 16-10-2014 female yes yes white not hispanic or latino 304.32.0 1 4 4 5 1 3 2 2 2 3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.4839802 11.7939820 5.0170177 9.6204510 2.6013400 13.5274740 13.1165439 2.7008836 8.2472525 1.3789555 3.4378403 NA 7.0513699 9.4123675 7.7683967 8.8627604 7.4306064 9.9885788 0.2162376 5.3638369 9.8654444 6.8383757 4.8814444 9.7590448 0.7940207 8.0131507 NA 3.0419088 11.0937624 3.3789416 6.8853645 9.4909495 3.4944156 2.1158989 8.8654444 6.7128447 5.1690230 10.6189407 5.8163488 1.3789555 5.1862985 2.9638995 14.2065518 8.3292573 7.4450339 9.6842463 10.6457310 13.6414798 12.6416227 10.7302519 1.1158989 8.0793840 0.3789555 9.2296523 1.6013162 NA 12.8027607 10.2191979 NA 10.2503364 9.7719773 NA 2.7939791 2.5753365 9.8593981 9.3976083 4.8163488 9.6165529 10.4896453 3.7939791 10.5871788 8.3619381 11.7810683 2.0941009 5.0419088 10.6846263 7.5883976 12.1826720 NA -1.2058961 0.7940207 1.1158989 7.8191214 5.7008725 15.0677585 15.4551707 7.2219650 9.7797883 8.4646380 10.2661651 9.4584294 8.8370094 9.2989401 8.7496318 7.6109658 NA 5.8714396 10.3229245 6.9025066 2.6013400 1.6013162 8.6157562 7.5836131 -1.2058961 9.4952884 7.9806903 8.1884444 8.7291469 3.1862945 3.2534145 3.1159155 10.7386940 3.6519587 NA 9.9707785 3.9639087 10.5030658 5.6013370 6.0034358 8.1212652 7.2818225 7.4450339 NA 1.6013162 0.7940207 11.5404963 10.1187252 7.4734622 8.5687690 9.1102635 11.3214590 4.7008725 3.7939791 9.1438161 8.3125957 2.8814493 14.4219148 9.4287931 9.0201894 8.2997937 9.3628882 10.7676794 12.6685792 7.4769762 10.9831888 10.1948615 11.9513289 3.2534145 7.1646696 NA 6.0793845 10.3543148 8.3714108 10.4061041 0.3789555 6.4593185 8.8641029 10.8080025 NA 1.7939791 8.9500650 8.9838065 5.2573426 7.3799960 -0.2060625 7.3253630 9.9354506 9.1776864 7.7423492 8.1404960 6.1948612 8.6628047 1.3789555 7.2160464 -0.2060625 7.7187945 9.9284084 7.2410651 -1.2058961 0.7940207 10.6351532 10.1679347 9.6712661 -1.2058961 10.7061228 8.6189408 0.7940207 10.5973059 8.0886028 11.5455260 10.7510841 2.9638995 6.5219019 6.0513699 7.1338317 10.3155824 7.2244349 6.7939817 8.1603041 0.305050 -0.026329 0.013773 0.070716 0.112570 -0.309090 -0.309090 -0.078544 -0.165230 -0.107360 -0.117300 -0.137550 0.856600 0.474260 -0.107880 -0.106180 -0.106180 0.045849 0.025671 0.220520 0.305050 -0.043668 -0.043668 0.114040 0.013773 -0.114950 -0.309090 -0.016017 -0.165230 -0.165230 0.266400 0.445860 0.783130 -0.107360 -0.122110 -0.117300 -0.177780 -0.107880 -0.107880 -0.107880 -0.127590 -0.069689 -0.144380 0.266 0.266 0.783 0.783 -0.105 -0.105 -0.117 -0.117 -0.122 -0.112 0.857 -0.108 -0.108 -0.128 -0.128 -0.106 -0.106 0.059 0.059 0.000 0.000 -0.121 -0.144 0.000 0.000 0.114 0.114 0.000 0.000 0.142 0.142 -0.309 -0.309 0.000 0.000 0.000 0.000 -0.165 -0.165 0.000 0.266 0.266 0.783 0.783 -0.105 -0.105 -0.117 -0.117 -0.122 -0.112 0.857 -0.108 -0.108 -0.128 -0.128 -0.106 -0.106 0.059 0.059 0.000 0.000 -0.121 -0.144 0.000 0.000 0.114 0.114 0.000 0.000 0.142 0.142 -0.309 -0.309 0.000 0.000 0.000 0.000 -0.165 -0.165 0.000 9.955744 9.614161 7.724719 10.530384 6.753984 8.142710 11.966097 8.273762 8.155926 10.364312 9.814962 10.190587 8.860071 5.133831 9.230288 11.407081 11.265911 5.378945 14.640819 6.555534 11.321459 10.094335 10.333626 9.134266 8.947534 12.467733 10.835299 5.022803 8.753984 13.643338 14.380470 10.923893 10.402237 11.531018 10.5385131 8.5099440 6.5818845 8.8906972 11.2628606 5.7008725 10.7430792 9.2223421 9.6535167 11.9660969 11.1209732 10.1476801 9.0820521 11.2431307 9.1592109 9.6480712 9.8280932 8.3619381 9.4196908 11.1541377 10.1905868 8.8600711 7.7384889 1.7939791 10.7982024 7.5981128 5.1159113 8.5455260 10.4588737 6.7769751 5.6887986 6.7826667 11.6135624 10.8774613 12.8289529 7.1382779 1.1158989 0.7940207 10.6589419 10.3695212 10.2270457 9.3379804 9.6720330 9.4909495 11.2413235 13.4464349 11.6113654 10.6620329 10.9245526 9.9258389 10.0642773 3.1159155 8.8135728 8.8080024 9.7925725 11.9513289 5.4521935 11.2541819 9.9187495 10.1198496 5.5883968 9.9129230 10.5761612 7.4342271 8.3292573 11.3540760 10.4206037 9.0897510 8.9936543 NA 10.5296946 10.4137434 9.1402408 NA 6.3638369 10.3180339 TCGA-P6-A5OH 59 1 0 NA stage iv t4 n0 NA 16-10-2014 female yes yes white not hispanic or latino 313.27.0 1 NA NA NA NA NA NA NA NA NA 0 0 0 0 0 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7.80880719 7.30903154 4.41053106 5.76961043 12.02491805 10.00590745 8.22458828 8.02139255 2.05689562 11.84950089 8.90933419 6.27928370 8.48873712 9.48129087 10.40856677 12.99230116 9.84334244 0.88697928 -0.11309873 0.88697928 9.81177878 6.96378159 NA 13.58398818 10.05689128 6.82360417 9.68948263 9.82507565 5.50167480 2.34638963 0.01135251 10.42029607 6.89259139 5.45682257 9.17467881 10.08110764 NA 10.58349925 9.54874447 11.44706028 3.56784963 2.69432306 1.69430077 6.98499827 13.46957879 NA -0.11309873 2.88695978 0.47196779 8.24231764 2.97443754 14.48728407 14.15707876 5.64038378 9.45578708 7.41811403 9.27282874 9.67405258 3.53081987 8.81067991 7.76041059 NA 0.88697928 2.05848968 11.11036474 4.01624670 2.20889178 10.72538245 10.32679719 8.18089774 NA 10.26037528 9.42565001 10.26358553 12.57783734 6.05689128 0.88697928 2.34638963 10.01780070 8.01882331 6.75115304 9.45302035 7.86424620 9.31427915 11.85994611 7.27067096 9.00921195 7.33817747 7.92313967 -0.11309873 1.47191578 NA 8.88696648 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10.493705 10.737934 9.193028 9.3841396 8.8742305 7.3463976 6.5235902 12.9764996 6.5874055 10.1307354 8.6534954 9.6724188 12.6479981 7.7355892 12.1671571 11.8395820 10.1055296 7.8784881 6.3381766 9.5917346 2.5874130 6.7511530 7.0713454 7.6284331 8.8191812 6.9258855 3.9313616 11.6503862 2.2088918 4.7198570 7.6846280 3.7938543 7.2489105 4.2445218 9.3818219 11.6235797 12.0290734 11.1467096 8.6029282 0.4719678 5.2088957 10.8577912 10.0379829 11.8697817 8.5035153 9.0303496 9.3111325 10.6029283 14.9084669 12.1138301 9.0341711 9.2652613 9.5199615 10.5593917 7.5308222 5.8177026 9.7604104 7.5272111 13.0007899 8.2356945 10.3042914 9.9517092 10.4808242 3.7938543 9.8421077 10.3677565 5.5016748 8.2984773 11.8547329 11.4954522 8.6301178 7.8469684 NA 11.1292741 9.1455323 8.4060719 3.5874010 7.6943210 10.4582449 TCGA-PK-A5H8 42 0 NA 3240 NA NA NA NA 16-10-2014 male yes yes white not hispanic or latino 304.32.0 NA 3 3 7 3 4 1 3 NA NA 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 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9.7304177 1.3210045 2.9059862 11.1913914 NA 6.8369630 7.3817229 5.8288220 10.5630098 5.2279182 6.6429542 7.5108512 11.2013755 1.6429326 1.3210045 2.7804571 3.7133439 10.8899328 8.7865931 8.0725705 8.0991037 8.0591189 7.1975440 11.5668378 11.0197314 1.3210045 3.0214620 NA 9.0574286 NA 0.9059670 13.1829859 11.0696389 7.5924899 10.6428026 9.8504572 NA 1.6429326 1.7752191 9.4438546 9.6236655 9.0557363 10.7773811 9.0127703 NA 9.5182434 7.1975440 11.0395596 NA 3.7133439 8.3898051 6.5304797 13.7103891 NA 1.9060055 -0.6789955 NA 7.8640586 1.9060055 14.4902851 14.0332506 5.9172169 11.5556945 7.3526861 9.6840664 9.6960662 2.1283924 8.7215647 6.4295507 -0.6789955 NA 3.1324946 10.6971521 1.9060055 4.1283841 10.4399678 9.6440814 8.0488448 0.3210045 9.9657843 8.0013159 10.4701386 8.1283816 4.4084877 0.9059670 1.3210045 9.5108512 1.3210045 NA 10.3654208 7.1913919 9.6917140 2.9059862 7.5736919 8.8244948 6.5009359 7.3322541 2.7804571 3.1283759 -0.6789955 8.2369059 10.4758448 NA 6.5594322 9.3461662 9.6664319 5.9934525 9.4347689 9.8298118 9.8808531 4.4084877 14.8480149 9.3735947 9.2966598 6.8128794 10.9302054 11.7149534 12.5668765 4.2279182 10.9176824 10.3489327 12.5196252 5.7304171 2.6429557 2.1283924 6.2635415 8.4682318 8.1790079 8.4137840 3.4084945 5.7639692 8.8168816 9.5377725 -0.6789955 11.8920682 10.3182062 9.2279172 -0.3455645 7.2286388 -0.6789955 6.4707744 12.1435975 5.2517645 1.9060055 8.5304801 9.2188722 7.1089290 NA 6.8601856 3.9648791 8.7886322 11.3078358 5.1023852 0.9059670 1.9060055 8.5304801 9.2664706 9.5268200 NA 9.8659912 9.3125486 0.3210045 11.3938292 8.3626860 10.9036391 10.8088667 2.1283924 7.6339099 7.6202345 9.3681507 9.6971521 7.9209393 6.1913909 9.7759839 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.357200 9.689533 9.416424 11.497512 6.935737 10.749387 12.642673 7.102386 9.279579 11.320322 7.920939 6.713344 9.099104 0.905967 8.971199 11.431510 9.024930 4.747291 11.942163 1.321004 9.666432 10.262074 9.399178 4.342953 10.020599 12.132803 8.933895 10.016255 8.749387 12.501713 12.905050 10.976526 11.075497 9.638439 9.1790076 8.4321623 6.3654213 7.5206988 13.0508598 9.0974596 9.9283570 10.2795794 9.1443939 12.6426730 8.4503098 11.1348079 10.6180690 10.2021406 8.9190793 7.7047309 10.1130036 0.3210045 7.8640586 9.3648059 6.7133439 9.0991037 8.0802158 8.2752231 10.9430785 NA -0.6789955 8.3599459 7.6653224 7.7722380 NA 9.7229728 11.6239512 12.1433984 11.6165087 8.7493868 NA 9.0875557 10.9969837 10.7441426 11.9352764 6.0624930 9.2354119 9.4256255 10.0361307 14.9829161 10.8861287 8.2954411 9.3238418 9.4554530 10.9026981 8.2158446 5.0489467 9.6508231 4.2752231 12.5196252 4.2752231 10.0708962 8.4984464 10.3599456 3.5689563 9.3308553 10.6219512 3.4084945 8.1665166 10.9508386 10.4827884 9.2234018 8.7722377 NA 11.6119613 9.0022651 8.2688390 3.9648791 9.4567359 9.7378241 TCGA-PK-A5H9 27 0 NA 616 stage ii t2 n0 NA 16-10-2014 female yes yes asian not hispanic or latino 304.32.0 1 4 2 8 4 3 1 3 1 3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.82093969 11.94282247 4.28586085 11.11645619 6.65601291 16.30487118 11.47508701 7.90944731 9.93487235 3.69054002 3.56557281 -1.51911450 5.71949287 6.13751172 9.15262836 9.63653798 8.48811448 10.33458783 0.99457972 8.78125675 9.34217425 5.69054002 1.28841763 8.48671196 1.83580283 8.43818929 0.80297899 0.48109224 9.66410217 9.80245174 3.41134489 8.25422648 6.22800478 3.69054002 6.26244631 6.44108836 6.60520836 8.52957423 5.70990541 0.48109224 5.62063919 1.48109224 12.32402679 8.30604619 7.96490282 8.75953670 10.14775505 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10.54009364 9.19103256 9.8152544 9.3351764 7.2326310 6.2492709 12.2970709 5.6807604 10.2608067 8.6295639 9.9415431 11.1664931 6.7939700 11.8653314 7.9937485 10.6825986 8.5200061 10.2409754 9.9492021 0.4810922 5.5791198 7.0913740 10.9754428 8.4612269 7.2371765 11.4656837 11.2564918 1.0660547 3.0046452 8.6346394 -1.5191145 8.0183059 2.6510172 8.0490431 11.3261852 12.1029102 11.6267010 5.0809987 -1.5191145 6.2292803 9.9389812 10.2665397 10.9611200 9.2467876 9.9958013 11.3541468 11.2134667 12.7800090 12.3350790 10.1017652 9.7882880 9.3390683 10.9423108 6.7431824 3.8030203 8.6560129 6.3819547 13.1363943 5.1953318 10.4014401 9.1526284 10.3629659 8.4640809 11.0666977 11.1869356 9.7956705 8.8430310 11.2164317 11.6833642 9.6911497 9.2276015 NA 11.1160140 9.1797919 8.4648218 NA 7.5948292 10.9666650 TCGA-PK-A5HA 63 0 NA 1201 stage i t1 n0 NA 16-10-2014 male yes yes NA NA 304.32.0 1 3 3 3 4 4 3 2 3 2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 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NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.5158646 11.7706375 3.4605853 10.0199953 1.1408441 12.3403445 10.3188679 -0.8590905 7.5417053 -0.8590905 5.3876141 NA 7.1520526 10.0890614 8.1181053 9.0979276 8.4285377 11.6791188 NA 4.2701103 10.0462126 4.8957146 6.0234683 6.9156129 1.4941596 9.4829003 NA 1.4627329 10.8303868 1.4627329 4.5519097 7.1351788 2.8412687 8.6722072 7.5754538 3.8412687 4.9481803 10.5806565 -0.8590905 2.8412687 6.6165591 1.9481897 13.1164049 8.0234688 7.6326783 9.1080518 10.5038652 10.0522175 12.9872934 10.5044128 1.7257848 2.4627591 1.1408441 10.0833401 0.7257848 -0.8590905 13.0547434 10.3845946 5.1408236 10.3449809 9.7837798 4.7555339 2.7257848 3.6080995 10.0034630 8.1769994 7.3207347 9.7656209 9.6799844 NA 10.0019124 7.5544538 11.1055274 3.1116824 2.3107473 7.1852194 5.4446074 12.7541546 NA 9.3392706 0.7257848 1.9481897 7.0416920 6.0477151 15.7716883 16.1310819 5.8768902 9.6585048 8.7144729 9.0537150 9.6476289 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5.6799839 10.5956389 8.7918772 9.9784535 3.8412687 9.5245515 10.2414878 5.2493505 9.2069147 11.6326786 10.5082403 9.2216432 8.9287280 NA 11.0389167 8.4582380 8.8455594 NA 8.2149670 10.7720026 TCGA-PK-A5HB 63 0 NA 1293 NA NA NA NA 16-10-2014 male yes yes NA NA 304.32.0 1 3 NA NA 3 2 2 4 2 1 0 0 4 0 0 4 4 0 0 1 0 4 0 0 4 0 0 2 0 0 0 0 0 0 4 0 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 0 6 0 1 0 0 0 0 0 6 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 4 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 4 0 0 0 0 4 0 4 0 0 4 0 0 0 4 0 0 0 0 6 0 0 4 4 1 0 0 0 0 0 0 1 0 6 0 0 0 0 0 0 0 6 4 0 0 4 0 4 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 4 0 0 0 0 4 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 0 4 4 5 0 0 0 4 0 0 0 0 0 4 0 0 6 0 4 4 0 0 0 4 4 4 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 1 0 0 4 0 0 4 0 0 0 4 0 0 6 0 4 0 0 0 0 0 0 0 0 0 0 0 4 4 4 5 0 0 0 6 4 4 0 0 4 0 4 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 6 1 0 0 0 0 0 4 1 0 0 4 0 0 0 0 4 4 0 0 0 0 0 4 4 0 0 1 0 6 4 0 7 0 0 4 0 0 4 0 0 0 0 0 0 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NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA all_q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.13e-08 0.0967 2.25e-13 3.07e-06 2.25e-13 2.25e-13 1.47e-11 0.00707 0.0208 9.11e-08 4.14e-12 2.25e-13 1.98e-06 2.6e-05 2.25e-13 2.25e-13 1.04e-05 2.25e-13 2.25e-13 0.0138 2.78e-12 0.0213 0.000795 1.41e-08 0.000132 0.0507 5.02e-08 0.0967 0 0.0839 2.25e-13 2.25e-13 2.25e-13 2.25e-13 4.36e-05 0.0534 2.25e-13 2.25e-13 0.0424 0.000105 2.25e-13 0.00601 2.25e-13 2.25e-13 0.0192 2.23e-09 0.0171 2.25e-13 2.25e-13 2.25e-13 0.0516 4.73e-09 2.25e-13 2.25e-13 0.0158 0.00193 2.25e-13 0.0567 0.00844 0.0279 2.25e-13 0.0753 0.000499 4.8e-07 2.25e-13 2.25e-13 3.64e-06 0.00758 0.0655 4.22e-05 0.000254 4.25e-07 1.46e-05 2.25e-13 2.25e-13 2.25e-13 0.00174 0.0574 3.63e-06 2.25e-13 2.25e-13 0.0702 0.0431 0.0721 0.0279 0.065 2.25e-13 2.25e-13 0.0209 2.25e-13 0.068 9.24e-09 1.38e-06 2.74e-07 2.6e-05 2.25e-13 0.00516 0.0638 2.25e-13 2.5e-08 0.00747 2.06e-06 2.25e-13 0.0376 0.00184 2.25e-13 0.0619 2.25e-13 0.0725 0.00156 2.25e-13 7.07e-06 1.58e-09 2.25e-13 0.0035 0.0462 2.25e-13 2.25e-13 2.25e-13 0.0786 0.00245 5.48e-05 8.27e-05 9.45e-07 1.41e-05 2.25e-13 2.25e-13 0.00255 3.16e-05 0.0285 0.00738 2.25e-13 0.000146 0.00827 2.25e-13 0.0483 0.00182 2.25e-13 2.25e-13 2.25e-13 2.25e-13 2.06e-06 2.25e-13 2.25e-13 6.49e-06 0.0201 2.25e-13 0.00115 2.25e-13 0.0089 0.0596 0.00561 2.25e-13 0.000432 2.45e-06 0.034 8.45e-06 0.082 9.47e-07 0.00523 0.0285 7.06e-06 3.33e-05 0.000464 4.01e-08 0.0558 0.0032 9.36e-10 0.000578 5.49e-06 2.25e-13 2.25e-13 0.00132 2.25e-13 2.71e-13 2.25e-13 2.25e-13 0.00193 0.0191 0.0208 2.25e-13 3.39e-11 2.25e-13 6.12e-08 0.00222 7.03e-05 2.25e-13 2.75e-07 2.25e-13 2.25e-13 0.000273 2.25e-13 2.25e-13 0.0161 2.25e-13 0.0619 2.25e-13 2.25e-13 2.05e-12 2.25e-13 0.00603 2.25e-13 1.31e-10 0.0215 0.0701 2.25e-13 5.36e-13 0.00359 2.25e-13 6.26e-13 5.73e-08 2.25e-13 8.33e-05 2.25e-13 2.25e-13 2.25e-13 0.000177 2.25e-13 0.0007160872 0.0004793583 1.823641e-11 0.06634209 2.894083e-08 0.002239002 2.208508e-06 0.001557086 9.204359e-06 2.914871e-07 6.451746e-05 0.01681032 6.25011e-06 1.897324e-11 0.01421292 0.02577329 7.235128e-10 0.0214168 0.0001327921 6.602691e-05 0.0002242458 3.076669e-06 8.175023e-08 0.0003207177 1.823641e-11 0.004375331 1.553472e-11 0.003738568 0.005030059 0.0005491497 0.0008603975 1.553472e-11 2.244482e-11 8.365592e-11 0.0003667368 8.36343e-06 2.244482e-11 0.005393658 0.09844688 1.553472e-11 5.869641e-06 5.021009e-06 0.0234385 1.553472e-11 6.25011e-06 0.01221224 0.0008434247 0.001557086 0.04012758 0.01159621 1.116727e-09 0.09706413 0.0001336671 6.451746e-05 0.0002230025 9.497424e-06 1.707854e-11 5.244504e-06 0.0003543894 4.879166e-05 1.823641e-11 2.026268e-12 1.553472e-11 0.01531342 0.01159621 6.166093e-05 0.02203265 0.008908536 0.02461193 7.16023e-08 0.01364298 2.598571e-07 3.079549e-05 0.01611849 0.000680848 0.0004053258 9.466442e-06 4.151455e-06 5.112211e-05 3.01747e-06 0.09891721 3.048833e-13 5.017395e-06 0.003177131 0.00207465 3.048833e-13 0.02461193 0.04837368 0.02461193 0.04446805 3.86015e-06 0.05386285 0.000680848 0.02461193 9.395168e-07 0.009933176 0.05134682 0.000426595 0.003321153 0.001494872 3.282647e-06 5.161999e-06 0.04500441 0.005072468 0.01755563 0.0004064509 0.04500441 0.01276976 3.647204e-07 0.004389894 0.05959363 0.01575232 4.241694e-05 0.06672324 3.048833e-13 3.01747e-06 0.0287109 7.682131e-07 3.048833e-13 0.008114749 0.02493098 0.0004582193 0.00369668 0.01039562 0.008908536 0.01885866 0.02481637 0.009299467 2.38808e-05 0.01039562 0.0007685493 4.167007e-05 0.006139152 0.001004831 0.02955133 0.02359654 3.584645e-05 0.04451823 0.001956563 0.001956563 0.0287109 0.01360044 0.02461193 5.118069e-06 9.395168e-07 0.05768165 0.001082542 0.005839926 0.001073234 0.000116216 0.00806116 0.002563309 0.01575232 0.07187762 0.03218207 0.00164996 0.05959363 0.005070167 1.968299e-06 0.003272127 2.782129e-05 0.02203265 0.005070167 8.70399e-12 2.428542e-09 0.001850645 0.0001200826 2.069051e-05 0.04318198 2.373966e-09 0.01755563 0.0003669226 1.450297e-07 3.048833e-13 3.048833e-13 0.0002408396 0.0003974537 0.02461193 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.077256 0.022386 0.22208 2.1179e-08 0.00020364 0.19557 0.10369 0.2356 0.12028 0.0043919 0.032075 0.22723 0.004052 0.075299 0.014283 0.020068 0.04544 0.075299 0.0114 5.8114e-09 0.23015 0.16089 0.027232 4.6428e-12 7.6683e-12 0.17423 0.039612 0.10871 0.0014894 2.7993e-06 0.17943 0.012075 0.042501 0.18438 0.00026571 0.17943 0.053507 0.041396 0.0039521 0.0014894 0.10216 0.025834 1.5177e-26 1 0.395 1 1 0 0 1 0.502 1 1.21e-07 4.72e-06 1 1 1 1 2.62e-13 3.08e-12 1 1 4.42e-05 3.01e-06 0.177 1 1 1 1 1 0.0405 0.0259 2.39e-10 4.88e-14 1 1 5.79e-06 4.69e-09 0.0677 0.000621 1 0.175 4.79e-06 0.999 0.999 0.999 0.999 0.999 0.999 0.0129 0.999 0.999 0.999 0.999 0.806 0.806 0.528 0.558 0.999 0.999 0.0138 0.999 0.999 0.999 0.999 8.3e-06 0.999 0.999 0.999 0.999 0.999 0.999 0.999 0.999 0.999 0.999 0.999 0.999 0.999 0.999 0.999 0.999 0.812 0.077256 0.22723 0.077256 0.020068 0.2356 0.04544 0.0043919 0.22208 0.22208 0.22723 0.2356 0.22208 0.22208 0.022386 0.22208 0.075299 0.22208 0.22208 0.077256 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