Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q22	17 (19%)	73	0.0083299	1	0.00038	0.164	0.56266	1	0.39844	1	0.00251	1	0.00019	0.083	0.11614	1	0.15623	1	0.01357	1	0.43982	1
amp_4p16.3	41 (46%)	49	0.00074999	0.32	0.5468	1	0.91428	1	0.19009	1	0.0132	1	0.0057499	1	0.48757	1	0.04593	1	0.40757	1	0.95265	1
amp_4q35.1	29 (32%)	61	2e-05	0.00894	0.1974	1	0.76633	1	0.55935	1	0.00080999	0.344	0.00087999	0.373	0.056219	1	0.00109	0.457	0.067719	1	0.29575	1
amp_5p15.33	65 (72%)	25	9.9999e-06	0.00458	0.8829	1	0.45534	1	0.89016	1	0.0099799	1	0.00087999	0.373	0.04437	1	0.18025	1	0.01591	1	0.30454	1
amp_5q35.3	63 (70%)	27	9.9999e-06	0.00458	0.00132	0.549	0.19191	1	0.0069399	1	9.9999e-06	0.00458	9.9999e-06	0.00458	0.0063199	1	0.04782	1	0.01195	1	0.29146	1
amp_6p21.31	19 (21%)	71	0.064759	1	0.7983	1	1	1	0.8009	1	0.081059	1	1	1	0.14079	1	0.02662	1	0.40419	1	0.30309	1
amp_6q24.3	19 (21%)	71	0.02269	1	0.90861	1	0.9654	1	0.63826	1	0.04646	1	0.93449	1	0.67141	1	0.23355	1	0.6314	1	1	1
amp_7p22.1	54 (60%)	36	0.00199	0.812	0.48355	1	0.42518	1	0.67549	1	0.0074899	1	0.03315	1	0.56958	1	0.49149	1	0.80559	1	0.13298	1
amp_9q31.3	34 (38%)	56	0.00058999	0.253	0.02019	1	0.2288	1	0.13692	1	0.02894	1	0.01756	1	0.056689	1	0.19905	1	0.25105	1	0.12851	1
amp_12q14.1	70 (78%)	20	9.9999e-06	0.00458	0.28264	1	0.0197	1	0.01052	1	0.02242	1	0.0019	0.781	0.45884	1	0.48806	1	0.35143	1	0.090509	1
amp_14q11.2	27 (30%)	63	9.9999e-05	0.0443	0.01331	1	0.02213	1	0.02878	1	3e-05	0.0133	9.9999e-06	0.00458	0.00032	0.139	0.0068699	1	0.00066999	0.287	0.00102	0.429
amp_16p13.3	50 (56%)	40	9.9999e-06	0.00458	0.26334	1	0.93061	1	0.053929	1	0.00017	0.0745	9.9999e-06	0.00458	0.075979	1	0.0096499	1	0.052789	1	0.58408	1
amp_16q22.1	56 (62%)	34	9.9999e-06	0.00458	0.37131	1	0.92289	1	0.80402	1	0.02933	1	0.00016	0.0702	0.065979	1	0.02242	1	0.15327	1	0.85967	1
amp_16q24.2	49 (54%)	41	9.9999e-06	0.00458	0.02728	1	0.95407	1	0.32341	1	3e-04	0.131	9.9999e-06	0.00458	0.062979	1	0.00281	1	0.0051499	1	0.37985	1
amp_17q25.3	18 (20%)	72	0.03371	1	0.68965	1	0.57526	1	0.10043	1	0.12805	1	0.6721	1	0.39796	1	0.69456	1	0.30408	1	0.46569	1
amp_19p13.12	58 (64%)	32	0.00046	0.198	0.03398	1	0.18992	1	0.0096699	1	0.00194	0.795	0.00038	0.164	0.3248	1	0.47979	1	0.58369	1	0.17181	1
amp_19q12	56 (62%)	34	0.00104	0.437	0.02017	1	0.39605	1	0.16498	1	0.00189	0.779	0.00097999	0.414	0.19841	1	0.25284	1	0.51348	1	0.062949	1
amp_xp11.22	49 (54%)	41	0.00015	0.066	0.92008	1	0.43546	1	0.01704	1	0.03344	1	0.096329	1	0.76413	1	0.14363	1	0.74021	1	0.088949	1
amp_xq28	46 (51%)	44	0.00037	0.16	0.75703	1	0.21635	1	0.04476	1	0.0088199	1	0.01141	1	0.51205	1	0.26118	1	1	1	0.02948	1
del_1p36.23	38 (42%)	52	0.02256	1	0.00399	1	0.56598	1	0.14796	1	0.071209	1	0.00372	1	0.8334	1	0.55839	1	0.40456	1	0.82564	1
del_1q43	18 (20%)	72	0.01496	1	0.04541	1	0.1637	1	0.15937	1	0.59052	1	0.13976	1	0.52437	1	0.55507	1	0.19217	1	0.18101	1
del_2q22.1	18 (20%)	72	0.03902	1	0.00369	1	0.62353	1	0.79439	1	0.23873	1	0.089969	1	0.31437	1	0.66383	1	0.40712	1	0.48862	1
del_2q37.3	21 (23%)	69	0.0059999	1	0.02663	1	0.68938	1	0.83071	1	0.29675	1	0.091589	1	0.48241	1	0.52937	1	0.56929	1	0.93809	1
del_3q13.31	25 (28%)	65	0.29977	1	0.04541	1	0.41884	1	0.47288	1	0.15706	1	0.04012	1	0.44958	1	0.20049	1	0.85011	1	0.36961	1
del_4q34.3	25 (28%)	65	0.0011	0.46	0.064349	1	0.86444	1	0.63659	1	0.02183	1	0.03896	1	0.03718	1	0.04183	1	0.00011	0.0486	0.24772	1
del_4q34.3	28 (31%)	62	0.00146	0.604	0.00485	1	0.73147	1	0.14803	1	0.18549	1	0.18884	1	0.089749	1	0.1867	1	0.00012	0.0529	0.26331	1
del_4q35.1	30 (33%)	60	0.0054299	1	0.0124	1	0.45825	1	0.38757	1	0.095459	1	0.04241	1	0.19239	1	0.16559	1	0.00076999	0.328	0.68165	1
del_6p24.3	20 (22%)	70	0.10873	1	0.91786	1	0.57813	1	0.31896	1	0.62192	1	0.4815	1	1	1	0.098489	1	1	1	0.45935	1
del_6q26	21 (23%)	69	0.11914	1	0.85936	1	0.67142	1	0.31635	1	0.32191	1	0.30709	1	0.5047	1	0.34683	1	0.2242	1	0.5938	1
del_7q36.3	11 (12%)	79	0.03819	1	0.25567	1	0.53281	1	0.66294	1	0.17745	1	0.33895	1	0.89562	1	0.73645	1	0.096249	1	0.24529	1
del_9p23	24 (27%)	66	0.0090899	1	0.0083199	1	0.15467	1	0.050399	1	3e-05	0.0133	0.00138	0.573	0.0074799	1	0.17241	1	0.0080399	1	0.73146	1
del_9p21.3	27 (30%)	63	0.0070899	1	0.00362	1	0.16668	1	0.22405	1	2e-05	0.00894	0.00032	0.139	0.01711	1	0.18086	1	0.0087999	1	0.56679	1
del_10q23.1	11 (12%)	79	0.25709	1	0.25882	1	1	1	0.23826	1	0.23638	1	0.74664	1	1	1	0.96914	1	1	1	0.28684	1
del_11p15.5	27 (30%)	63	0.0074099	1	0.01994	1	0.45776	1	0.67277	1	0.089059	1	0.03327	1	0.12292	1	0.598	1	0.39136	1	0.5141	1
del_11q14.1	25 (28%)	65	0.02002	1	0.0065499	1	0.96514	1	0.55133	1	0.21841	1	0.35041	1	0.28099	1	0.74371	1	0.32499	1	0.58222	1
del_12q14.2	5 (6%)	85	0.090319	1	0.22241	1	NA	NA	NA	NA	0.17842	1	0.0011	0.46	0.59466	1	0.30524	1	0.85376	1	0.14989	1
del_13q14.2	42 (47%)	48	0.00306	1	0.088859	1	0.66437	1	0.84233	1	0.33414	1	0.55696	1	1	1	0.53401	1	0.40502	1	0.82735	1
del_14q21.2	20 (22%)	70	0.01968	1	0.92554	1	0.65475	1	0.57485	1	0.30182	1	0.28388	1	0.36968	1	0.73307	1	0.26953	1	0.15779	1
del_16p13.3	7 (8%)	83	0.080579	1	0.5568	1	0.87711	1	0.34101	1	0.54501	1	0.0082399	1	0.02434	1	0.5986	1	0.02001	1	0.76026	1
del_16q23.1	11 (12%)	79	0.0096999	1	0.5073	1	0.56636	1	0.23128	1	0.04261	1	0.01081	1	0.27494	1	0.13815	1	0.0106	1	0.54035	1
del_17q11.2	24 (27%)	66	0.01487	1	0.0055099	1	0.6425	1	0.62948	1	0.10199	1	0.10508	1	0.2582	1	0.01803	1	0.11131	1	0.39692	1
del_17q21.31	26 (29%)	64	0.00413	1	0.0090199	1	0.42641	1	0.5407	1	0.076969	1	0.04613	1	0.03459	1	0.00469	1	0.18524	1	0.062549	1
del_17q24.2	24 (27%)	66	0.00198	0.81	0.01391	1	0.81912	1	0.28903	1	0.15731	1	0.0404	1	0.15519	1	0.0269	1	0.051969	1	0.23852	1
del_18q21.2	36 (40%)	54	0.03066	1	0.32057	1	1	1	0.32491	1	0.82292	1	1	1	0.49516	1	0.91355	1	0.29175	1	0.35249	1
del_20p12.1	12 (13%)	78	0.0051399	1	0.64178	1	0.1178	1	0.61922	1	0.04343	1	0.02738	1	0.0065399	1	0.51634	1	0.00183	0.756	1	1
del_22q12.1	50 (56%)	40	0.00486	1	0.13847	1	0.6917	1	0.29175	1	0.74635	1	0.18237	1	0.6345	1	0.87981	1	0.91657	1	0.19965	1