This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 80 arm-level events and 10 molecular subtypes across 408 patients, 68 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'CN_CNMF'.
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2p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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2q gain cnv correlated to 'CN_CNMF'.
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3p gain cnv correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3q gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p gain cnv correlated to 'CN_CNMF'.
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7p gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7q gain cnv correlated to 'CN_CNMF'.
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9p gain cnv correlated to 'CN_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9q gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10p gain cnv correlated to 'CN_CNMF'.
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10q gain cnv correlated to 'CN_CNMF'.
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12p gain cnv correlated to 'CN_CNMF'.
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18p gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19p gain cnv correlated to 'CN_CNMF'.
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19q gain cnv correlated to 'CN_CNMF'.
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20p gain cnv correlated to 'CN_CNMF'.
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20q gain cnv correlated to 'CN_CNMF'.
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21q gain cnv correlated to 'CN_CNMF'.
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2q loss cnv correlated to 'CN_CNMF'.
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3p loss cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4p loss cnv correlated to 'CN_CNMF'.
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4q loss cnv correlated to 'CN_CNMF'.
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5q loss cnv correlated to 'CN_CNMF'.
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6p loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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6q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8p loss cnv correlated to 'CN_CNMF'.
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9p loss cnv correlated to 'CN_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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11p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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11q loss cnv correlated to 'CN_CNMF'.
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12q loss cnv correlated to 'CN_CNMF'.
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13q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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14q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p loss cnv correlated to 'CN_CNMF'.
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16q loss cnv correlated to 'CN_CNMF'.
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17p loss cnv correlated to 'CN_CNMF'.
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22q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
9q loss | 169 (41%) | 239 |
1e-05 (0.008) |
4e-05 (0.0302) |
0.0282 (1.00) |
0.0104 (1.00) |
0.00046 (0.335) |
1e-05 (0.008) |
0.027 (1.00) |
0.00068 (0.492) |
1e-05 (0.008) |
1e-05 (0.008) |
3p loss | 52 (13%) | 356 |
0.301 (1.00) |
0.125 (1.00) |
0.0217 (1.00) |
0.0248 (1.00) |
1e-05 (0.008) |
1e-05 (0.008) |
0.442 (1.00) |
0.00092 (0.661) |
3e-05 (0.0227) |
0.00015 (0.112) |
11p loss | 180 (44%) | 228 |
1e-05 (0.008) |
1e-05 (0.008) |
0.181 (1.00) |
0.799 (1.00) |
0.00011 (0.0821) |
0.00038 (0.277) |
0.132 (1.00) |
0.0879 (1.00) |
0.00023 (0.171) |
0.00069 (0.497) |
15q loss | 144 (35%) | 264 |
1e-05 (0.008) |
0.00033 (0.242) |
0.106 (1.00) |
0.315 (1.00) |
0.342 (1.00) |
0.0167 (1.00) |
0.0153 (1.00) |
1e-05 (0.008) |
0.0125 (1.00) |
0.00013 (0.0968) |
9p gain | 68 (17%) | 340 |
1e-05 (0.008) |
0.13 (1.00) |
0.858 (1.00) |
0.585 (1.00) |
0.447 (1.00) |
0.41 (1.00) |
0.379 (1.00) |
0.245 (1.00) |
6e-05 (0.0449) |
1e-05 (0.008) |
9p loss | 174 (43%) | 234 |
1e-05 (0.008) |
0.00175 (1.00) |
0.289 (1.00) |
0.0898 (1.00) |
0.0628 (1.00) |
0.00329 (1.00) |
0.0422 (1.00) |
0.00136 (0.962) |
2e-05 (0.0152) |
1e-05 (0.008) |
2p gain | 110 (27%) | 298 |
1e-05 (0.008) |
0.00029 (0.214) |
0.326 (1.00) |
0.735 (1.00) |
0.196 (1.00) |
0.0337 (1.00) |
0.0968 (1.00) |
0.0141 (1.00) |
0.232 (1.00) |
0.00196 (1.00) |
3q gain | 178 (44%) | 230 |
4e-05 (0.0302) |
0.951 (1.00) |
0.453 (1.00) |
0.994 (1.00) |
0.215 (1.00) |
0.0636 (1.00) |
0.00898 (1.00) |
0.00942 (1.00) |
0.00641 (1.00) |
1e-05 (0.008) |
7p gain | 172 (42%) | 236 |
1e-05 (0.008) |
0.0129 (1.00) |
0.0135 (1.00) |
0.338 (1.00) |
0.63 (1.00) |
0.121 (1.00) |
0.295 (1.00) |
0.0346 (1.00) |
0.246 (1.00) |
0.00025 (0.185) |
9q gain | 56 (14%) | 352 |
5e-05 (0.0375) |
0.0277 (1.00) |
0.88 (1.00) |
0.0295 (1.00) |
0.0389 (1.00) |
0.00259 (1.00) |
0.849 (1.00) |
0.311 (1.00) |
0.00049 (0.356) |
3e-05 (0.0227) |
18p gain | 116 (28%) | 292 |
1e-05 (0.008) |
0.00053 (0.385) |
0.951 (1.00) |
0.911 (1.00) |
0.201 (1.00) |
0.0592 (1.00) |
0.39 (1.00) |
0.127 (1.00) |
0.0585 (1.00) |
5e-05 (0.0375) |
6p loss | 100 (25%) | 308 |
1e-05 (0.008) |
0.00027 (0.199) |
0.637 (1.00) |
0.758 (1.00) |
0.121 (1.00) |
0.00544 (1.00) |
0.242 (1.00) |
0.0108 (1.00) |
0.224 (1.00) |
0.00096 (0.687) |
6q loss | 156 (38%) | 252 |
1e-05 (0.008) |
0.00387 (1.00) |
0.832 (1.00) |
0.488 (1.00) |
0.395 (1.00) |
0.0894 (1.00) |
0.179 (1.00) |
0.00456 (1.00) |
0.598 (1.00) |
5e-05 (0.0375) |
10q loss | 127 (31%) | 281 |
1e-05 (0.008) |
0.00023 (0.171) |
0.513 (1.00) |
0.581 (1.00) |
0.0177 (1.00) |
0.156 (1.00) |
0.183 (1.00) |
0.0589 (1.00) |
0.253 (1.00) |
0.0321 (1.00) |
13q loss | 85 (21%) | 323 |
0.0003 (0.221) |
0.161 (1.00) |
0.0104 (1.00) |
0.103 (1.00) |
0.0393 (1.00) |
0.162 (1.00) |
0.24 (1.00) |
1e-05 (0.008) |
0.0131 (1.00) |
0.0014 (0.988) |
14q loss | 119 (29%) | 289 |
1e-05 (0.008) |
0.649 (1.00) |
0.0679 (1.00) |
0.0375 (1.00) |
0.0908 (1.00) |
0.00037 (0.27) |
0.00167 (1.00) |
0.031 (1.00) |
0.00753 (1.00) |
6e-05 (0.0449) |
22q loss | 159 (39%) | 249 |
1e-05 (0.008) |
0.00516 (1.00) |
0.636 (1.00) |
0.0165 (1.00) |
0.0127 (1.00) |
0.0211 (1.00) |
0.153 (1.00) |
0.00332 (1.00) |
0.0716 (1.00) |
3e-05 (0.0227) |
1p gain | 89 (22%) | 319 |
4e-05 (0.0302) |
0.027 (1.00) |
0.292 (1.00) |
0.223 (1.00) |
0.444 (1.00) |
0.734 (1.00) |
0.788 (1.00) |
0.249 (1.00) |
0.794 (1.00) |
0.0485 (1.00) |
2q gain | 55 (13%) | 353 |
1e-05 (0.008) |
0.135 (1.00) |
0.616 (1.00) |
0.297 (1.00) |
0.732 (1.00) |
0.71 (1.00) |
0.101 (1.00) |
0.36 (1.00) |
0.682 (1.00) |
0.426 (1.00) |
3p gain | 140 (34%) | 268 |
0.00048 (0.349) |
0.781 (1.00) |
0.158 (1.00) |
0.234 (1.00) |
0.00875 (1.00) |
0.0137 (1.00) |
0.0132 (1.00) |
0.0412 (1.00) |
0.00975 (1.00) |
0.0003 (0.221) |
5p gain | 166 (41%) | 242 |
1e-05 (0.008) |
0.39 (1.00) |
0.0427 (1.00) |
0.24 (1.00) |
0.167 (1.00) |
0.00143 (1.00) |
0.837 (1.00) |
0.00253 (1.00) |
0.0915 (1.00) |
0.00459 (1.00) |
7q gain | 150 (37%) | 258 |
1e-05 (0.008) |
0.00682 (1.00) |
0.163 (1.00) |
0.83 (1.00) |
0.501 (1.00) |
0.135 (1.00) |
0.108 (1.00) |
0.118 (1.00) |
0.848 (1.00) |
0.00456 (1.00) |
10p gain | 117 (29%) | 291 |
1e-05 (0.008) |
0.787 (1.00) |
0.817 (1.00) |
0.468 (1.00) |
0.605 (1.00) |
0.0253 (1.00) |
0.93 (1.00) |
0.753 (1.00) |
0.765 (1.00) |
0.00931 (1.00) |
10q gain | 44 (11%) | 364 |
0.00022 (0.163) |
0.195 (1.00) |
0.362 (1.00) |
0.371 (1.00) |
0.474 (1.00) |
0.0255 (1.00) |
0.419 (1.00) |
0.994 (1.00) |
0.137 (1.00) |
0.0735 (1.00) |
12p gain | 115 (28%) | 293 |
3e-05 (0.0227) |
0.0461 (1.00) |
0.705 (1.00) |
0.404 (1.00) |
0.855 (1.00) |
0.872 (1.00) |
0.899 (1.00) |
0.0249 (1.00) |
0.338 (1.00) |
0.127 (1.00) |
19p gain | 88 (22%) | 320 |
0.00033 (0.242) |
0.62 (1.00) |
0.507 (1.00) |
0.597 (1.00) |
0.137 (1.00) |
0.38 (1.00) |
0.609 (1.00) |
0.473 (1.00) |
0.127 (1.00) |
0.738 (1.00) |
19q gain | 135 (33%) | 273 |
1e-05 (0.008) |
0.313 (1.00) |
0.443 (1.00) |
0.679 (1.00) |
0.53 (1.00) |
0.433 (1.00) |
0.5 (1.00) |
0.0397 (1.00) |
0.152 (1.00) |
0.195 (1.00) |
20p gain | 202 (50%) | 206 |
2e-05 (0.0152) |
0.024 (1.00) |
0.569 (1.00) |
0.0486 (1.00) |
0.287 (1.00) |
0.022 (1.00) |
0.314 (1.00) |
0.0707 (1.00) |
0.0268 (1.00) |
0.0608 (1.00) |
20q gain | 230 (56%) | 178 |
1e-05 (0.008) |
0.0639 (1.00) |
0.372 (1.00) |
0.18 (1.00) |
0.461 (1.00) |
0.211 (1.00) |
0.2 (1.00) |
0.128 (1.00) |
0.219 (1.00) |
0.0153 (1.00) |
21q gain | 117 (29%) | 291 |
1e-05 (0.008) |
0.00936 (1.00) |
0.5 (1.00) |
0.266 (1.00) |
0.00381 (1.00) |
0.00433 (1.00) |
0.00264 (1.00) |
0.00439 (1.00) |
0.0204 (1.00) |
0.173 (1.00) |
2q loss | 90 (22%) | 318 |
0.00026 (0.192) |
0.00099 (0.707) |
0.752 (1.00) |
0.543 (1.00) |
0.0506 (1.00) |
0.0553 (1.00) |
0.733 (1.00) |
0.694 (1.00) |
0.0356 (1.00) |
0.0119 (1.00) |
4p loss | 142 (35%) | 266 |
1e-05 (0.008) |
0.00934 (1.00) |
0.386 (1.00) |
0.445 (1.00) |
0.0207 (1.00) |
0.00162 (1.00) |
0.0781 (1.00) |
0.0285 (1.00) |
0.0308 (1.00) |
0.101 (1.00) |
4q loss | 136 (33%) | 272 |
1e-05 (0.008) |
0.00226 (1.00) |
0.139 (1.00) |
0.192 (1.00) |
0.163 (1.00) |
0.00461 (1.00) |
0.592 (1.00) |
0.0523 (1.00) |
0.00384 (1.00) |
0.00314 (1.00) |
5q loss | 159 (39%) | 249 |
1e-05 (0.008) |
0.0107 (1.00) |
0.795 (1.00) |
0.188 (1.00) |
0.334 (1.00) |
0.0599 (1.00) |
0.227 (1.00) |
0.019 (1.00) |
0.288 (1.00) |
0.0135 (1.00) |
8p loss | 185 (45%) | 223 |
1e-05 (0.008) |
0.0189 (1.00) |
0.146 (1.00) |
0.102 (1.00) |
0.0258 (1.00) |
0.15 (1.00) |
0.167 (1.00) |
0.151 (1.00) |
0.285 (1.00) |
0.00379 (1.00) |
11q loss | 131 (32%) | 277 |
1e-05 (0.008) |
0.00096 (0.687) |
0.0419 (1.00) |
0.156 (1.00) |
0.0412 (1.00) |
0.194 (1.00) |
0.594 (1.00) |
0.493 (1.00) |
0.528 (1.00) |
0.228 (1.00) |
12q loss | 57 (14%) | 351 |
2e-05 (0.0152) |
0.435 (1.00) |
0.367 (1.00) |
0.407 (1.00) |
0.813 (1.00) |
0.664 (1.00) |
1 (1.00) |
0.653 (1.00) |
0.828 (1.00) |
0.0689 (1.00) |
16p loss | 106 (26%) | 302 |
1e-05 (0.008) |
0.0242 (1.00) |
0.658 (1.00) |
0.604 (1.00) |
0.848 (1.00) |
0.605 (1.00) |
0.313 (1.00) |
0.117 (1.00) |
0.0663 (1.00) |
0.0106 (1.00) |
16q loss | 104 (25%) | 304 |
1e-05 (0.008) |
0.0201 (1.00) |
0.589 (1.00) |
0.903 (1.00) |
0.495 (1.00) |
0.885 (1.00) |
0.915 (1.00) |
0.0689 (1.00) |
0.773 (1.00) |
0.00756 (1.00) |
17p loss | 182 (45%) | 226 |
1e-05 (0.008) |
0.641 (1.00) |
0.911 (1.00) |
0.53 (1.00) |
0.446 (1.00) |
0.00942 (1.00) |
0.676 (1.00) |
0.0154 (1.00) |
0.163 (1.00) |
0.00347 (1.00) |
1q gain | 128 (31%) | 280 |
0.00155 (1.00) |
0.329 (1.00) |
0.675 (1.00) |
0.973 (1.00) |
0.452 (1.00) |
0.829 (1.00) |
0.332 (1.00) |
0.532 (1.00) |
0.306 (1.00) |
0.47 (1.00) |
4p gain | 39 (10%) | 369 |
0.0602 (1.00) |
0.00389 (1.00) |
0.606 (1.00) |
0.416 (1.00) |
0.0183 (1.00) |
0.00716 (1.00) |
0.01 (1.00) |
0.547 (1.00) |
0.323 (1.00) |
0.57 (1.00) |
4q gain | 25 (6%) | 383 |
0.0386 (1.00) |
0.215 (1.00) |
0.546 (1.00) |
0.204 (1.00) |
0.0799 (1.00) |
0.321 (1.00) |
0.0328 (1.00) |
0.466 (1.00) |
0.319 (1.00) |
0.27 (1.00) |
5q gain | 51 (12%) | 357 |
0.0173 (1.00) |
0.694 (1.00) |
0.00997 (1.00) |
0.136 (1.00) |
0.383 (1.00) |
0.362 (1.00) |
0.486 (1.00) |
0.187 (1.00) |
0.621 (1.00) |
0.0686 (1.00) |
6p gain | 75 (18%) | 333 |
0.00365 (1.00) |
0.413 (1.00) |
0.848 (1.00) |
0.133 (1.00) |
0.575 (1.00) |
0.172 (1.00) |
0.944 (1.00) |
0.665 (1.00) |
0.222 (1.00) |
0.297 (1.00) |
6q gain | 41 (10%) | 367 |
0.0442 (1.00) |
0.329 (1.00) |
0.975 (1.00) |
0.0405 (1.00) |
0.599 (1.00) |
0.181 (1.00) |
0.503 (1.00) |
0.445 (1.00) |
0.0412 (1.00) |
0.0254 (1.00) |
8p gain | 92 (23%) | 316 |
0.00064 (0.463) |
0.273 (1.00) |
0.15 (1.00) |
0.037 (1.00) |
0.286 (1.00) |
0.806 (1.00) |
0.22 (1.00) |
0.0196 (1.00) |
0.701 (1.00) |
0.107 (1.00) |
8q gain | 204 (50%) | 204 |
0.00087 (0.626) |
0.125 (1.00) |
0.0556 (1.00) |
0.138 (1.00) |
0.807 (1.00) |
0.98 (1.00) |
0.357 (1.00) |
0.0328 (1.00) |
0.737 (1.00) |
0.0582 (1.00) |
11p gain | 29 (7%) | 379 |
0.00412 (1.00) |
0.115 (1.00) |
0.195 (1.00) |
0.153 (1.00) |
0.214 (1.00) |
0.0537 (1.00) |
0.968 (1.00) |
0.469 (1.00) |
0.00401 (1.00) |
0.0333 (1.00) |
11q gain | 48 (12%) | 360 |
0.00638 (1.00) |
0.534 (1.00) |
0.199 (1.00) |
0.0316 (1.00) |
0.646 (1.00) |
0.00295 (1.00) |
0.814 (1.00) |
0.751 (1.00) |
0.0158 (1.00) |
0.121 (1.00) |
12q gain | 90 (22%) | 318 |
0.00228 (1.00) |
0.554 (1.00) |
0.0682 (1.00) |
0.0129 (1.00) |
0.152 (1.00) |
0.249 (1.00) |
0.593 (1.00) |
0.057 (1.00) |
0.8 (1.00) |
0.0376 (1.00) |
13q gain | 100 (25%) | 308 |
0.00966 (1.00) |
0.835 (1.00) |
0.942 (1.00) |
0.748 (1.00) |
0.381 (1.00) |
0.593 (1.00) |
0.722 (1.00) |
0.825 (1.00) |
0.232 (1.00) |
0.0162 (1.00) |
14q gain | 59 (14%) | 349 |
0.00057 (0.413) |
0.355 (1.00) |
0.379 (1.00) |
0.15 (1.00) |
0.0512 (1.00) |
0.0906 (1.00) |
0.743 (1.00) |
0.213 (1.00) |
0.569 (1.00) |
0.453 (1.00) |
15q gain | 34 (8%) | 374 |
0.285 (1.00) |
0.0022 (1.00) |
0.709 (1.00) |
0.576 (1.00) |
0.775 (1.00) |
0.0215 (1.00) |
0.1 (1.00) |
0.73 (1.00) |
0.209 (1.00) |
0.146 (1.00) |
16p gain | 75 (18%) | 333 |
0.0416 (1.00) |
0.303 (1.00) |
0.43 (1.00) |
0.274 (1.00) |
0.31 (1.00) |
0.0796 (1.00) |
0.448 (1.00) |
0.264 (1.00) |
0.539 (1.00) |
0.453 (1.00) |
16q gain | 81 (20%) | 327 |
0.114 (1.00) |
0.0985 (1.00) |
0.327 (1.00) |
0.196 (1.00) |
0.26 (1.00) |
0.0879 (1.00) |
0.228 (1.00) |
0.137 (1.00) |
0.639 (1.00) |
0.204 (1.00) |
17p gain | 56 (14%) | 352 |
0.00036 (0.264) |
0.165 (1.00) |
0.427 (1.00) |
0.96 (1.00) |
0.482 (1.00) |
0.0348 (1.00) |
0.0261 (1.00) |
0.195 (1.00) |
0.113 (1.00) |
0.027 (1.00) |
17q gain | 136 (33%) | 272 |
0.00079 (0.569) |
0.0745 (1.00) |
0.508 (1.00) |
0.541 (1.00) |
0.109 (1.00) |
0.273 (1.00) |
0.17 (1.00) |
0.175 (1.00) |
0.164 (1.00) |
0.00133 (0.943) |
18q gain | 63 (15%) | 345 |
0.00118 (0.841) |
0.0119 (1.00) |
0.323 (1.00) |
0.302 (1.00) |
0.597 (1.00) |
0.99 (1.00) |
0.0872 (1.00) |
0.549 (1.00) |
0.299 (1.00) |
0.00595 (1.00) |
22q gain | 50 (12%) | 358 |
0.00129 (0.916) |
0.00146 (1.00) |
0.591 (1.00) |
0.567 (1.00) |
0.00128 (0.91) |
0.0664 (1.00) |
0.139 (1.00) |
0.329 (1.00) |
0.0526 (1.00) |
0.104 (1.00) |
xq gain | 49 (12%) | 359 |
0.0193 (1.00) |
0.0814 (1.00) |
0.749 (1.00) |
0.78 (1.00) |
0.491 (1.00) |
0.348 (1.00) |
0.148 (1.00) |
0.225 (1.00) |
0.251 (1.00) |
0.568 (1.00) |
1p loss | 30 (7%) | 378 |
0.115 (1.00) |
0.521 (1.00) |
0.252 (1.00) |
0.122 (1.00) |
0.62 (1.00) |
0.388 (1.00) |
0.417 (1.00) |
0.834 (1.00) |
0.784 (1.00) |
0.785 (1.00) |
1q loss | 30 (7%) | 378 |
0.0303 (1.00) |
0.846 (1.00) |
0.4 (1.00) |
0.957 (1.00) |
0.534 (1.00) |
0.602 (1.00) |
0.857 (1.00) |
0.257 (1.00) |
0.52 (1.00) |
0.0501 (1.00) |
2p loss | 44 (11%) | 364 |
0.0881 (1.00) |
0.161 (1.00) |
0.961 (1.00) |
0.749 (1.00) |
0.22 (1.00) |
0.0891 (1.00) |
0.49 (1.00) |
0.698 (1.00) |
0.183 (1.00) |
0.161 (1.00) |
3q loss | 23 (6%) | 385 |
0.599 (1.00) |
0.44 (1.00) |
0.00328 (1.00) |
0.0134 (1.00) |
0.058 (1.00) |
0.0139 (1.00) |
0.89 (1.00) |
0.233 (1.00) |
0.00094 (0.674) |
0.142 (1.00) |
5p loss | 54 (13%) | 354 |
0.0358 (1.00) |
0.444 (1.00) |
0.316 (1.00) |
0.665 (1.00) |
0.514 (1.00) |
0.017 (1.00) |
0.896 (1.00) |
0.702 (1.00) |
0.0595 (1.00) |
0.0265 (1.00) |
7p loss | 19 (5%) | 389 |
0.305 (1.00) |
0.629 (1.00) |
0.268 (1.00) |
0.62 (1.00) |
0.803 (1.00) |
0.776 (1.00) |
0.244 (1.00) |
0.0988 (1.00) |
0.263 (1.00) |
0.239 (1.00) |
7q loss | 27 (7%) | 381 |
0.0334 (1.00) |
0.838 (1.00) |
0.323 (1.00) |
0.428 (1.00) |
0.683 (1.00) |
0.989 (1.00) |
0.44 (1.00) |
0.232 (1.00) |
0.562 (1.00) |
0.296 (1.00) |
8q loss | 33 (8%) | 375 |
0.0991 (1.00) |
0.815 (1.00) |
0.32 (1.00) |
0.0096 (1.00) |
0.0879 (1.00) |
0.187 (1.00) |
0.287 (1.00) |
0.649 (1.00) |
0.647 (1.00) |
0.669 (1.00) |
10p loss | 73 (18%) | 335 |
0.0376 (1.00) |
0.0148 (1.00) |
0.911 (1.00) |
0.266 (1.00) |
0.00474 (1.00) |
0.00412 (1.00) |
0.544 (1.00) |
0.125 (1.00) |
0.415 (1.00) |
0.348 (1.00) |
12p loss | 53 (13%) | 355 |
0.00745 (1.00) |
0.621 (1.00) |
0.944 (1.00) |
0.474 (1.00) |
0.086 (1.00) |
0.117 (1.00) |
0.523 (1.00) |
0.44 (1.00) |
0.143 (1.00) |
0.269 (1.00) |
17q loss | 42 (10%) | 366 |
0.00134 (0.949) |
0.705 (1.00) |
0.814 (1.00) |
0.697 (1.00) |
0.569 (1.00) |
0.745 (1.00) |
0.794 (1.00) |
0.774 (1.00) |
0.837 (1.00) |
0.582 (1.00) |
18p loss | 98 (24%) | 310 |
0.00068 (0.492) |
0.466 (1.00) |
0.45 (1.00) |
0.365 (1.00) |
0.596 (1.00) |
0.266 (1.00) |
0.171 (1.00) |
0.835 (1.00) |
0.114 (1.00) |
0.256 (1.00) |
18q loss | 144 (35%) | 264 |
0.0052 (1.00) |
0.412 (1.00) |
0.683 (1.00) |
0.744 (1.00) |
0.638 (1.00) |
0.777 (1.00) |
0.00185 (1.00) |
0.00217 (1.00) |
0.0833 (1.00) |
0.334 (1.00) |
19p loss | 94 (23%) | 314 |
0.00127 (0.904) |
0.529 (1.00) |
0.641 (1.00) |
0.49 (1.00) |
0.0922 (1.00) |
0.0286 (1.00) |
0.256 (1.00) |
0.306 (1.00) |
0.339 (1.00) |
0.0686 (1.00) |
19q loss | 57 (14%) | 351 |
0.0166 (1.00) |
1 (1.00) |
0.204 (1.00) |
0.0935 (1.00) |
0.399 (1.00) |
0.294 (1.00) |
0.0704 (1.00) |
0.628 (1.00) |
0.268 (1.00) |
0.0188 (1.00) |
20p loss | 33 (8%) | 375 |
0.206 (1.00) |
0.0399 (1.00) |
0.251 (1.00) |
0.0376 (1.00) |
1 (1.00) |
0.917 (1.00) |
0.795 (1.00) |
0.957 (1.00) |
0.401 (1.00) |
0.304 (1.00) |
20q loss | 16 (4%) | 392 |
0.0956 (1.00) |
0.0473 (1.00) |
0.736 (1.00) |
0.46 (1.00) |
0.486 (1.00) |
0.531 (1.00) |
0.455 (1.00) |
0.64 (1.00) |
0.402 (1.00) |
0.751 (1.00) |
21q loss | 77 (19%) | 331 |
0.0344 (1.00) |
0.101 (1.00) |
0.0684 (1.00) |
0.33 (1.00) |
0.00256 (1.00) |
0.011 (1.00) |
0.173 (1.00) |
0.127 (1.00) |
0.00281 (1.00) |
0.0183 (1.00) |
xq loss | 78 (19%) | 330 |
0.00638 (1.00) |
0.256 (1.00) |
0.971 (1.00) |
0.816 (1.00) |
0.702 (1.00) |
0.579 (1.00) |
0.0697 (1.00) |
0.275 (1.00) |
0.0227 (1.00) |
0.0127 (1.00) |
P value = 4e-05 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
1P GAIN MUTATED | 19 | 37 | 17 | 16 |
1P GAIN WILD-TYPE | 68 | 66 | 139 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
2P GAIN MUTATED | 42 | 41 | 12 | 15 |
2P GAIN WILD-TYPE | 45 | 62 | 144 | 47 |
P value = 0.00029 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 137 | 68 |
2P GAIN MUTATED | 48 | 49 | 7 |
2P GAIN WILD-TYPE | 110 | 88 | 61 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
2Q GAIN MUTATED | 24 | 19 | 8 | 4 |
2Q GAIN WILD-TYPE | 63 | 84 | 148 | 58 |
P value = 3e-04 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 46 | 93 | 66 | 31 | 84 |
3P GAIN MUTATED | 27 | 25 | 36 | 23 | 2 | 22 |
3P GAIN WILD-TYPE | 47 | 21 | 57 | 43 | 29 | 62 |
P value = 4e-05 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
3Q GAIN MUTATED | 45 | 61 | 46 | 26 |
3Q GAIN WILD-TYPE | 42 | 42 | 110 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 46 | 93 | 66 | 31 | 84 |
3Q GAIN MUTATED | 30 | 30 | 49 | 31 | 3 | 29 |
3Q GAIN WILD-TYPE | 44 | 16 | 44 | 35 | 28 | 55 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
5P GAIN MUTATED | 39 | 54 | 33 | 40 |
5P GAIN WILD-TYPE | 48 | 49 | 123 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
7P GAIN MUTATED | 51 | 56 | 32 | 33 |
7P GAIN WILD-TYPE | 36 | 47 | 124 | 29 |
P value = 0.00025 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 46 | 93 | 66 | 31 | 84 |
7P GAIN MUTATED | 24 | 18 | 45 | 31 | 3 | 44 |
7P GAIN WILD-TYPE | 50 | 28 | 48 | 35 | 28 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
7Q GAIN MUTATED | 48 | 45 | 32 | 25 |
7Q GAIN WILD-TYPE | 39 | 58 | 124 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
9P GAIN MUTATED | 11 | 22 | 9 | 26 |
9P GAIN WILD-TYPE | 76 | 81 | 147 | 36 |
P value = 6e-05 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 43 | 134 | 119 |
9P GAIN MUTATED | 32 | 5 | 14 | 14 |
9P GAIN WILD-TYPE | 66 | 38 | 120 | 105 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 46 | 93 | 66 | 31 | 84 |
9P GAIN MUTATED | 13 | 6 | 13 | 2 | 1 | 30 |
9P GAIN WILD-TYPE | 61 | 40 | 80 | 64 | 30 | 54 |
P value = 5e-05 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
9Q GAIN MUTATED | 9 | 16 | 11 | 20 |
9Q GAIN WILD-TYPE | 78 | 87 | 145 | 42 |
P value = 3e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 46 | 93 | 66 | 31 | 84 |
9Q GAIN MUTATED | 9 | 6 | 10 | 2 | 0 | 26 |
9Q GAIN WILD-TYPE | 65 | 40 | 83 | 64 | 31 | 58 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
10P GAIN MUTATED | 43 | 40 | 14 | 20 |
10P GAIN WILD-TYPE | 44 | 63 | 142 | 42 |
P value = 0.00022 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
10Q GAIN MUTATED | 18 | 15 | 6 | 5 |
10Q GAIN WILD-TYPE | 69 | 88 | 150 | 57 |
P value = 3e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
12P GAIN MUTATED | 38 | 32 | 25 | 20 |
12P GAIN WILD-TYPE | 49 | 71 | 131 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
18P GAIN MUTATED | 27 | 44 | 13 | 32 |
18P GAIN WILD-TYPE | 60 | 59 | 143 | 30 |
P value = 5e-05 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 46 | 93 | 66 | 31 | 84 |
18P GAIN MUTATED | 15 | 10 | 36 | 21 | 0 | 30 |
18P GAIN WILD-TYPE | 59 | 36 | 57 | 45 | 31 | 54 |
P value = 0.00033 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
19P GAIN MUTATED | 17 | 38 | 22 | 11 |
19P GAIN WILD-TYPE | 70 | 65 | 134 | 51 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
19Q GAIN MUTATED | 42 | 49 | 29 | 15 |
19Q GAIN WILD-TYPE | 45 | 54 | 127 | 47 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
20P GAIN MUTATED | 50 | 57 | 54 | 41 |
20P GAIN WILD-TYPE | 37 | 46 | 102 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
20Q GAIN MUTATED | 60 | 68 | 61 | 41 |
20Q GAIN WILD-TYPE | 27 | 35 | 95 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
21Q GAIN MUTATED | 28 | 54 | 20 | 15 |
21Q GAIN WILD-TYPE | 59 | 49 | 136 | 47 |
P value = 0.00026 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
2Q LOSS MUTATED | 25 | 26 | 18 | 21 |
2Q LOSS WILD-TYPE | 62 | 77 | 138 | 41 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 98 | 159 | 96 |
3P LOSS MUTATED | 4 | 9 | 27 |
3P LOSS WILD-TYPE | 94 | 150 | 69 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 101 | 114 | 78 | 60 |
3P LOSS MUTATED | 2 | 7 | 26 | 5 |
3P LOSS WILD-TYPE | 99 | 107 | 52 | 55 |
P value = 3e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 43 | 134 | 119 |
3P LOSS MUTATED | 26 | 1 | 15 | 8 |
3P LOSS WILD-TYPE | 72 | 42 | 119 | 111 |
P value = 0.00015 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 46 | 93 | 66 | 31 | 84 |
3P LOSS MUTATED | 2 | 2 | 15 | 10 | 1 | 20 |
3P LOSS WILD-TYPE | 72 | 44 | 78 | 56 | 30 | 64 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
4P LOSS MUTATED | 37 | 47 | 24 | 34 |
4P LOSS WILD-TYPE | 50 | 56 | 132 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
4Q LOSS MUTATED | 35 | 42 | 23 | 36 |
4Q LOSS WILD-TYPE | 52 | 61 | 133 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
5Q LOSS MUTATED | 48 | 49 | 32 | 30 |
5Q LOSS WILD-TYPE | 39 | 54 | 124 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
6P LOSS MUTATED | 40 | 29 | 16 | 15 |
6P LOSS WILD-TYPE | 47 | 74 | 140 | 47 |
P value = 0.00027 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 137 | 68 |
6P LOSS MUTATED | 25 | 49 | 14 |
6P LOSS WILD-TYPE | 133 | 88 | 54 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
6Q LOSS MUTATED | 63 | 46 | 22 | 25 |
6Q LOSS WILD-TYPE | 24 | 57 | 134 | 37 |
P value = 5e-05 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 46 | 93 | 66 | 31 | 84 |
6Q LOSS MUTATED | 26 | 23 | 46 | 31 | 2 | 25 |
6Q LOSS WILD-TYPE | 48 | 23 | 47 | 35 | 29 | 59 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
8P LOSS MUTATED | 30 | 66 | 47 | 42 |
8P LOSS WILD-TYPE | 57 | 37 | 109 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
9P LOSS MUTATED | 48 | 49 | 72 | 5 |
9P LOSS WILD-TYPE | 39 | 54 | 84 | 57 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 43 | 134 | 119 |
9P LOSS MUTATED | 23 | 24 | 70 | 53 |
9P LOSS WILD-TYPE | 75 | 19 | 64 | 66 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 46 | 93 | 66 | 31 | 84 |
9P LOSS MUTATED | 24 | 24 | 43 | 39 | 21 | 19 |
9P LOSS WILD-TYPE | 50 | 22 | 50 | 27 | 10 | 65 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
9Q LOSS MUTATED | 47 | 43 | 74 | 5 |
9Q LOSS WILD-TYPE | 40 | 60 | 82 | 57 |
P value = 4e-05 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 137 | 68 |
9Q LOSS MUTATED | 46 | 74 | 35 |
9Q LOSS WILD-TYPE | 112 | 63 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 101 | 114 | 78 | 60 |
9Q LOSS MUTATED | 56 | 60 | 20 | 14 |
9Q LOSS WILD-TYPE | 45 | 54 | 58 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 43 | 134 | 119 |
9Q LOSS MUTATED | 17 | 24 | 76 | 49 |
9Q LOSS WILD-TYPE | 81 | 19 | 58 | 70 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 46 | 93 | 66 | 31 | 84 |
9Q LOSS MUTATED | 28 | 23 | 43 | 35 | 25 | 12 |
9Q LOSS WILD-TYPE | 46 | 23 | 50 | 31 | 6 | 72 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
10Q LOSS MUTATED | 31 | 48 | 22 | 26 |
10Q LOSS WILD-TYPE | 56 | 55 | 134 | 36 |
P value = 0.00023 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 137 | 68 |
10Q LOSS MUTATED | 41 | 60 | 13 |
10Q LOSS WILD-TYPE | 117 | 77 | 55 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
11P LOSS MUTATED | 53 | 64 | 49 | 14 |
11P LOSS WILD-TYPE | 34 | 39 | 107 | 48 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 137 | 68 |
11P LOSS MUTATED | 42 | 81 | 34 |
11P LOSS WILD-TYPE | 116 | 56 | 34 |
P value = 0.00011 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 98 | 159 | 96 |
11P LOSS MUTATED | 34 | 88 | 30 |
11P LOSS WILD-TYPE | 64 | 71 | 66 |
P value = 0.00023 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 43 | 134 | 119 |
11P LOSS MUTATED | 25 | 22 | 70 | 57 |
11P LOSS WILD-TYPE | 73 | 21 | 64 | 62 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
11Q LOSS MUTATED | 42 | 45 | 29 | 15 |
11Q LOSS WILD-TYPE | 45 | 58 | 127 | 47 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
12Q LOSS MUTATED | 16 | 13 | 9 | 19 |
12Q LOSS WILD-TYPE | 71 | 90 | 147 | 43 |
P value = 3e-04 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
13Q LOSS MUTATED | 23 | 30 | 16 | 16 |
13Q LOSS WILD-TYPE | 64 | 73 | 140 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 89 | 99 | 93 | 70 | 54 |
13Q LOSS MUTATED | 28 | 28 | 8 | 18 | 3 |
13Q LOSS WILD-TYPE | 61 | 71 | 85 | 52 | 51 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
14Q LOSS MUTATED | 30 | 52 | 25 | 12 |
14Q LOSS WILD-TYPE | 57 | 51 | 131 | 50 |
P value = 6e-05 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 46 | 93 | 66 | 31 | 84 |
14Q LOSS MUTATED | 19 | 20 | 32 | 28 | 1 | 16 |
14Q LOSS WILD-TYPE | 55 | 26 | 61 | 38 | 30 | 68 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
15Q LOSS MUTATED | 36 | 55 | 22 | 31 |
15Q LOSS WILD-TYPE | 51 | 48 | 134 | 31 |
P value = 0.00033 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 137 | 68 |
15Q LOSS MUTATED | 64 | 51 | 10 |
15Q LOSS WILD-TYPE | 94 | 86 | 58 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 89 | 99 | 93 | 70 | 54 |
15Q LOSS MUTATED | 29 | 49 | 17 | 34 | 15 |
15Q LOSS WILD-TYPE | 60 | 50 | 76 | 36 | 39 |
P value = 0.00013 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 46 | 93 | 66 | 31 | 84 |
15Q LOSS MUTATED | 23 | 23 | 37 | 21 | 1 | 35 |
15Q LOSS WILD-TYPE | 51 | 23 | 56 | 45 | 30 | 49 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
16P LOSS MUTATED | 27 | 28 | 13 | 38 |
16P LOSS WILD-TYPE | 60 | 75 | 143 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
16Q LOSS MUTATED | 30 | 34 | 8 | 32 |
16Q LOSS WILD-TYPE | 57 | 69 | 148 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
17P LOSS MUTATED | 60 | 50 | 50 | 22 |
17P LOSS WILD-TYPE | 27 | 53 | 106 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 87 | 103 | 156 | 62 |
22Q LOSS MUTATED | 27 | 59 | 25 | 48 |
22Q LOSS WILD-TYPE | 60 | 44 | 131 | 14 |
P value = 3e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 46 | 93 | 66 | 31 | 84 |
22Q LOSS MUTATED | 23 | 14 | 44 | 30 | 1 | 42 |
22Q LOSS WILD-TYPE | 51 | 32 | 49 | 36 | 30 | 42 |
-
Copy number data file = transformed.cor.cli.txt
-
Molecular subtypes file = BLCA-TP.transferedmergedcluster.txt
-
Number of patients = 408
-
Number of significantly arm-level cnvs = 80
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.