Correlation between gene mutation status and molecular subtypes
Breast Invasive Carcinoma (Primary solid tumor)
17 October 2014  |  analyses__2014_10_17
Maintainer Information
Citation Information
doi:10.7908/C10Z7240
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2014): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C10Z7240
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 152 genes and 12 molecular subtypes across 976 patients, 46 significant findings detected with P value < 0.05 and Q value < 0.25.

  • PIK3CA mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TP53 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CDH1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GATA3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MAP3K1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CBFB mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 152 genes and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 46 significant findings detected.

Clinical
Features 		MRNA
CNMF 		MRNA
CHIERARCHICAL 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
PIK3CA 316 (32%) 660 1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		0.00014
(0.22) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161)
TP53 295 (30%) 681 1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161)
GATA3 97 (10%) 879 1e-05
(0.0161) 		1e-05
(0.0161) 		0.00243
(1.00) 		6e-05
(0.0944) 		0.0163
(1.00) 		0.00013
(0.204) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		2e-05
(0.0315) 		0.111
(1.00)
CDH1 106 (11%) 870 0.00031
(0.485) 		0.00641
(1.00) 		1e-05
(0.0161) 		1e-05
(0.0161) 		0.00798
(1.00) 		0.02
(1.00) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161) 		1e-05
(0.0161)
MAP3K1 70 (7%) 906 8e-05
(0.126) 		0.00012
(0.188) 		0.0007
(1.00) 		0.0486
(1.00) 		0.00041
(0.64) 		2e-05
(0.0315) 		0.00086
(1.00) 		0.00031
(0.485) 		8e-05
(0.126) 		0.00027
(0.423) 		0.109
(1.00) 		0.134
(1.00)
CBFB 23 (2%) 953 0.0974
(1.00) 		0.215
(1.00) 		0.0359
(1.00) 		0.132
(1.00) 		0.113
(1.00) 		0.0809
(1.00) 		0.0669
(1.00) 		0.16
(1.00) 		0.00205
(1.00) 		1e-05
(0.0161) 		0.0204
(1.00) 		0.00031
(0.485)
RUNX1 29 (3%) 947 0.0155
(1.00) 		0.0873
(1.00) 		0.00306
(1.00) 		0.168
(1.00) 		1
(1.00) 		0.3
(1.00) 		0.0953
(1.00) 		0.00794
(1.00) 		0.0329
(1.00) 		0.335
(1.00) 		0.311
(1.00) 		0.453
(1.00)
PTEN 35 (4%) 941 0.311
(1.00) 		0.905
(1.00) 		0.413
(1.00) 		0.651
(1.00) 		0.921
(1.00) 		0.974
(1.00) 		0.726
(1.00) 		0.382
(1.00) 		0.0461
(1.00) 		0.927
(1.00) 		0.65
(1.00) 		0.826
(1.00)
ARID1A 27 (3%) 949 0.303
(1.00) 		0.941
(1.00) 		0.0345
(1.00) 		0.259
(1.00) 		1
(1.00) 		0.242
(1.00) 		0.279
(1.00) 		0.761
(1.00) 		0.18
(1.00) 		0.308
(1.00) 		0.162
(1.00) 		0.568
(1.00)
MLL3 69 (7%) 907 0.666
(1.00) 		0.156
(1.00) 		0.775
(1.00) 		0.356
(1.00) 		0.636
(1.00) 		0.529
(1.00) 		0.0757
(1.00) 		0.161
(1.00) 		0.063
(1.00) 		0.0703
(1.00) 		0.408
(1.00) 		0.315
(1.00)
FOXA1 23 (2%) 953 0.367
(1.00) 		0.536
(1.00) 		0.171
(1.00) 		0.0442
(1.00) 		0.893
(1.00) 		0.951
(1.00) 		0.0278
(1.00) 		0.222
(1.00) 		0.089
(1.00) 		0.176
(1.00) 		0.183
(1.00) 		0.524
(1.00)
MAP2K4 32 (3%) 944 0.0582
(1.00) 		0.00411
(1.00) 		0.065
(1.00) 		0.048
(1.00) 		0.00215
(1.00) 		0.29
(1.00) 		0.0006
(0.937) 		0.00132
(1.00) 		0.00031
(0.485) 		0.0213
(1.00) 		0.0116
(1.00) 		0.0116
(1.00)
RBMX 14 (1%) 962 0.383
(1.00) 		0.107
(1.00) 		0.0916
(1.00) 		0.141
(1.00) 		0.558
(1.00) 		0.584
(1.00) 		0.145
(1.00) 		0.357
(1.00) 		0.319
(1.00) 		0.75
(1.00) 		0.0485
(1.00) 		1
(1.00)
TBX3 27 (3%) 949 0.581
(1.00) 		0.629
(1.00) 		0.303
(1.00) 		0.374
(1.00) 		0.0838
(1.00) 		0.974
(1.00) 		0.0507
(1.00) 		0.261
(1.00) 		0.297
(1.00) 		0.0511
(1.00) 		0.604
(1.00) 		0.723
(1.00)
THEM5 11 (1%) 965 0.261
(1.00) 		0.87
(1.00) 		0.11
(1.00) 		0.289
(1.00) 		0.208
(1.00) 		0.119
(1.00) 		0.77
(1.00) 		0.97
(1.00) 		0.376
(1.00) 		0.728
(1.00) 		0.0386
(1.00) 		0.287
(1.00)
RB1 19 (2%) 957 0.876
(1.00) 		0.304
(1.00) 		0.143
(1.00) 		0.119
(1.00) 		0.441
(1.00) 		0.775
(1.00) 		0.0891
(1.00) 		0.0652
(1.00) 		0.0438
(1.00) 		0.019
(1.00) 		0.0935
(1.00) 		0.214
(1.00)
NF1 27 (3%) 949 0.574
(1.00) 		0.804
(1.00) 		0.393
(1.00) 		0.152
(1.00) 		0.937
(1.00) 		0.266
(1.00) 		0.616
(1.00) 		0.302
(1.00) 		0.39
(1.00) 		0.704
(1.00) 		0.941
(1.00) 		0.542
(1.00)
ACTL6B 10 (1%) 966 0.351
(1.00) 		0.29
(1.00) 		0.0448
(1.00) 		0.285
(1.00) 		0.865
(1.00) 		0.349
(1.00) 		0.838
(1.00) 		0.32
(1.00) 		1
(1.00) 		0.358
(1.00) 		0.425
(1.00) 		0.716
(1.00)
SPEN 32 (3%) 944 0.665
(1.00) 		0.788
(1.00) 		0.59
(1.00) 		0.277
(1.00) 		0.943
(1.00) 		0.341
(1.00) 		0.274
(1.00) 		0.425
(1.00) 		0.0245
(1.00) 		0.00296
(1.00) 		0.0941
(1.00) 		0.659
(1.00)
CDKN1B 10 (1%) 966 0.637
(1.00) 		0.74
(1.00) 		0.129
(1.00) 		0.32
(1.00) 		0.739
(1.00) 		0.445
(1.00) 		0.0828
(1.00) 		0.0586
(1.00) 		0.0467
(1.00) 		0.125
(1.00) 		0.393
(1.00) 		0.0156
(1.00)
NCOR1 41 (4%) 935 0.74
(1.00) 		0.967
(1.00) 		0.859
(1.00) 		0.648
(1.00) 		0.438
(1.00) 		0.522
(1.00) 		0.617
(1.00) 		0.507
(1.00) 		1
(1.00) 		0.13
(1.00) 		0.717
(1.00) 		0.784
(1.00)
SF3B1 16 (2%) 960 0.845
(1.00) 		0.845
(1.00) 		0.483
(1.00) 		0.0474
(1.00) 		0.451
(1.00) 		0.167
(1.00) 		0.342
(1.00) 		0.273
(1.00) 		0.0683
(1.00) 		0.398
(1.00) 		0.35
(1.00) 		0.249
(1.00)
ZFP36L1 9 (1%) 967 0.404
(1.00) 		0.898
(1.00) 		0.00543
(1.00) 		0.0556
(1.00) 		0.0255
(1.00) 		0.232
(1.00) 		0.194
(1.00) 		0.259
(1.00) 		0.913
(1.00) 		0.992
(1.00) 		0.929
(1.00) 		0.714
(1.00)
KRAS 6 (1%) 970 0.537
(1.00) 		0.632
(1.00) 		0.379
(1.00) 		0.257
(1.00) 		0.203
(1.00) 		0.713
(1.00) 		0.75
(1.00) 		0.271
(1.00) 		0.866
(1.00) 		0.804
(1.00) 		0.92
(1.00) 		0.125
(1.00)
TCP11 6 (1%) 970 0.783
(1.00) 		0.512
(1.00) 		0.533
(1.00) 		0.864
(1.00) 		0.919
(1.00) 		0.75
(1.00) 		0.784
(1.00) 		0.765
(1.00) 		0.727
(1.00)
AQP12A 6 (1%) 970 0.628
(1.00) 		0.729
(1.00) 		0.288
(1.00) 		0.162
(1.00) 		0.2
(1.00) 		0.134
(1.00) 		0.871
(1.00) 		0.963
(1.00) 		0.764
(1.00) 		0.793
(1.00) 		0.386
(1.00) 		1
(1.00)
DLG1 13 (1%) 963 0.339
(1.00) 		0.319
(1.00) 		0.947
(1.00) 		0.103
(1.00) 		0.894
(1.00) 		0.0952
(1.00) 		0.0686
(1.00) 		0.37
(1.00) 		0.348
(1.00) 		0.0263
(1.00) 		0.667
(1.00) 		0.807
(1.00)
MYB 12 (1%) 964 0.739
(1.00) 		0.0292
(1.00) 		0.214
(1.00) 		0.622
(1.00) 		1
(1.00) 		0.684
(1.00) 		1
(1.00) 		0.133
(1.00) 		0.0337
(1.00) 		0.252
(1.00) 		0.284
(1.00) 		0.00144
(1.00)
RPGR 19 (2%) 957 0.968
(1.00) 		0.7
(1.00) 		0.756
(1.00) 		0.537
(1.00) 		0.745
(1.00) 		0.236
(1.00) 		0.294
(1.00) 		0.946
(1.00) 		0.61
(1.00) 		0.173
(1.00) 		0.683
(1.00) 		0.476
(1.00)
TBL1XR1 10 (1%) 966 0.157
(1.00) 		0.08
(1.00) 		0.0364
(1.00) 		0.927
(1.00) 		0.45
(1.00) 		0.133
(1.00) 		0.44
(1.00) 		0.0575
(1.00) 		0.147
(1.00) 		0.0156
(1.00) 		0.946
(1.00) 		0.179
(1.00)
KDM6A 16 (2%) 960 0.739
(1.00) 		0.345
(1.00) 		0.48
(1.00) 		0.627
(1.00) 		0.636
(1.00) 		0.874
(1.00) 		0.502
(1.00) 		0.298
(1.00) 		0.057
(1.00) 		0.697
(1.00) 		0.737
(1.00) 		0.279
(1.00)
MYH9 18 (2%) 958 0.396
(1.00) 		0.423
(1.00) 		0.222
(1.00) 		0.569
(1.00) 		0.821
(1.00) 		0.0212
(1.00) 		0.493
(1.00) 		0.467
(1.00) 		0.449
(1.00) 		0.514
(1.00) 		0.506
(1.00) 		0.261
(1.00)
HLA-C 9 (1%) 967 0.137
(1.00) 		0.85
(1.00) 		0.808
(1.00) 		0.274
(1.00) 		0.397
(1.00) 		0.771
(1.00) 		0.152
(1.00) 		0.228
(1.00) 		0.371
(1.00) 		0.0429
(1.00) 		0.0282
(1.00) 		0.594
(1.00)
RAB42 4 (0%) 972 0.406
(1.00) 		0.0708
(1.00) 		0.355
(1.00) 		0.398
(1.00) 		0.499
(1.00) 		0.123
(1.00) 		0.148
(1.00) 		0.556
(1.00) 		0.0379
(1.00)
FGFR2 11 (1%) 965 0.915
(1.00) 		0.874
(1.00) 		0.305
(1.00) 		0.368
(1.00) 		1
(1.00) 		0.917
(1.00) 		0.669
(1.00) 		0.448
(1.00) 		0.295
(1.00) 		0.341
(1.00) 		0.607
(1.00) 		0.67
(1.00)
ERBB2 21 (2%) 955 0.775
(1.00) 		0.574
(1.00) 		0.102
(1.00) 		0.059
(1.00) 		0.545
(1.00) 		0.879
(1.00) 		0.19
(1.00) 		0.182
(1.00) 		0.0948
(1.00) 		0.112
(1.00) 		0.322
(1.00) 		0.604
(1.00)
CTCF 17 (2%) 959 0.0588
(1.00) 		0.0438
(1.00) 		0.06
(1.00) 		0.0331
(1.00) 		0.0616
(1.00) 		0.125
(1.00) 		0.0876
(1.00) 		0.144
(1.00) 		0.199
(1.00) 		0.00147
(1.00) 		0.841
(1.00) 		0.615
(1.00)
ZMYM3 14 (1%) 962 0.496
(1.00) 		0.442
(1.00) 		0.878
(1.00) 		0.446
(1.00) 		0.128
(1.00) 		0.285
(1.00) 		0.468
(1.00) 		0.552
(1.00) 		0.645
(1.00) 		0.614
(1.00) 		0.232
(1.00) 		0.853
(1.00)
FRMPD2 12 (1%) 964 0.82
(1.00) 		1
(1.00) 		0.657
(1.00) 		0.0957
(1.00) 		0.467
(1.00) 		0.884
(1.00) 		0.644
(1.00) 		0.0794
(1.00) 		0.868
(1.00) 		0.73
(1.00) 		0.188
(1.00) 		0.754
(1.00)
TFE3 7 (1%) 969 0.674
(1.00) 		0.905
(1.00) 		0.75
(1.00) 		0.642
(1.00) 		1
(1.00) 		0.547
(1.00) 		0.695
(1.00) 		0.529
(1.00) 		1
(1.00) 		0.469
(1.00) 		0.859
(1.00) 		0.302
(1.00)
GPS2 11 (1%) 965 0.0136
(1.00) 		0.0488
(1.00) 		0.0677
(1.00) 		0.342
(1.00) 		0.264
(1.00) 		0.745
(1.00) 		0.0376
(1.00) 		0.0565
(1.00) 		0.445
(1.00) 		0.146
(1.00) 		0.476
(1.00) 		0.417
(1.00)
DOCK11 20 (2%) 956 0.665
(1.00) 		0.447
(1.00) 		0.243
(1.00) 		0.425
(1.00) 		0.364
(1.00) 		0.0667
(1.00) 		0.0891
(1.00) 		0.0392
(1.00) 		0.191
(1.00) 		0.0386
(1.00) 		0.0386
(1.00) 		0.117
(1.00)
HRNR 31 (3%) 945 0.988
(1.00) 		0.782
(1.00) 		0.124
(1.00) 		0.744
(1.00) 		0.592
(1.00) 		0.719
(1.00) 		0.788
(1.00) 		0.647
(1.00) 		0.759
(1.00) 		0.696
(1.00) 		0.148
(1.00) 		0.786
(1.00)
CASZ1 14 (1%) 962 0.938
(1.00) 		0.854
(1.00) 		0.958
(1.00) 		0.532
(1.00) 		0.113
(1.00) 		0.938
(1.00) 		0.777
(1.00) 		0.912
(1.00) 		0.873
(1.00) 		0.857
(1.00) 		0.428
(1.00) 		0.324
(1.00)
CDC42EP1 5 (1%) 971 0.521
(1.00) 		0.463
(1.00) 		0.441
(1.00) 		0.261
(1.00) 		1
(1.00) 		0.583
(1.00) 		0.235
(1.00) 		0.763
(1.00) 		0.855
(1.00) 		0.408
(1.00)
C1QTNF5 7 (1%) 969 0.643
(1.00) 		0.198
(1.00) 		0.396
(1.00) 		0.643
(1.00) 		0.712
(1.00) 		0.785
(1.00) 		0.406
(1.00) 		0.285
(1.00) 		0.124
(1.00) 		0.0136
(1.00) 		0.0792
(1.00)
TGS1 13 (1%) 963 0.634
(1.00) 		0.667
(1.00) 		0.478
(1.00) 		0.248
(1.00) 		0.112
(1.00) 		0.711
(1.00) 		0.937
(1.00) 		0.0974
(1.00) 		0.172
(1.00) 		0.2
(1.00) 		0.248
(1.00) 		0.354
(1.00)
USP36 8 (1%) 968 0.838
(1.00) 		0.181
(1.00) 		0.968
(1.00) 		1
(1.00) 		0.714
(1.00) 		0.313
(1.00) 		0.365
(1.00) 		0.0656
(1.00) 		0.904
(1.00) 		0.234
(1.00)
ASB10 8 (1%) 968 0.944
(1.00) 		0.0638
(1.00) 		0.884
(1.00) 		0.503
(1.00) 		0.366
(1.00) 		0.653
(1.00) 		0.383
(1.00) 		0.168
(1.00) 		0.902
(1.00) 		1
(1.00)
EIF4A2 9 (1%) 967 0.231
(1.00) 		1
(1.00) 		0.95
(1.00) 		0.229
(1.00) 		1
(1.00) 		0.19
(1.00) 		0.243
(1.00) 		0.0561
(1.00) 		0.284
(1.00) 		0.609
(1.00) 		0.372
(1.00) 		0.28
(1.00)
DNAH12 18 (2%) 958 1
(1.00) 		0.737
(1.00) 		0.647
(1.00) 		0.411
(1.00) 		0.451
(1.00) 		0.879
(1.00) 		1
(1.00) 		0.966
(1.00) 		0.953
(1.00) 		0.793
(1.00) 		0.16
(1.00) 		0.23
(1.00)
RHBG 4 (0%) 972 0.826
(1.00) 		0.00777
(1.00) 		0.098
(1.00) 		0.685
(1.00) 		0.124
(1.00)
PAX2 4 (0%) 972 0.945
(1.00) 		0.336
(1.00) 		0.355
(1.00) 		0.3
(1.00) 		0.379
(1.00) 		0.187
(1.00) 		0.178
(1.00) 		0.822
(1.00) 		0.0488
(1.00)
FXYD5 5 (1%) 971 0.566
(1.00) 		0.788
(1.00) 		0.299
(1.00) 		0.643
(1.00) 		1
(1.00) 		0.104
(1.00) 		0.68
(1.00) 		0.14
(1.00) 		0.831
(1.00)
BCORL1 15 (2%) 961 0.152
(1.00) 		0.833
(1.00) 		0.611
(1.00) 		0.171
(1.00) 		0.292
(1.00) 		0.00791
(1.00) 		0.0965
(1.00) 		0.573
(1.00) 		0.342
(1.00) 		0.953
(1.00) 		0.876
(1.00) 		0.666
(1.00)
ZNF362 5 (1%) 971 0.879
(1.00) 		0.872
(1.00) 		0.121
(1.00) 		0.154
(1.00) 		0.744
(1.00) 		0.423
(1.00) 		0.451
(1.00) 		0.244
(1.00) 		0.708
(1.00)
PTHLH 7 (1%) 969 0.229
(1.00) 		0.899
(1.00) 		0.0452
(1.00) 		0.181
(1.00) 		0.69
(1.00) 		0.676
(1.00) 		0.151
(1.00) 		0.337
(1.00) 		0.356
(1.00) 		0.859
(1.00)
GPRIN2 11 (1%) 965 0.601
(1.00) 		0.623
(1.00) 		0.875
(1.00) 		0.639
(1.00) 		0.876
(1.00) 		0.041
(1.00) 		0.48
(1.00) 		0.702
(1.00) 		0.915
(1.00) 		0.265
(1.00) 		0.401
(1.00) 		0.664
(1.00)
ANKRD12 18 (2%) 958 0.277
(1.00) 		0.134
(1.00) 		0.365
(1.00) 		0.873
(1.00) 		0.388
(1.00) 		0.119
(1.00) 		0.183
(1.00) 		0.107
(1.00) 		0.582
(1.00) 		0.345
(1.00) 		0.204
(1.00) 		0.715
(1.00)
ZNF687 11 (1%) 965 0.343
(1.00) 		0.13
(1.00) 		0.353
(1.00) 		0.13
(1.00) 		0.129
(1.00) 		0.0874
(1.00) 		0.0187
(1.00) 		0.241
(1.00) 		0.0754
(1.00) 		0.0273
(1.00) 		0.874
(1.00) 		0.593
(1.00)
KCNN3 9 (1%) 967 0.143
(1.00) 		0.51
(1.00) 		0.206
(1.00) 		0.0977
(1.00) 		0.324
(1.00) 		0.829
(1.00) 		0.269
(1.00) 		0.329
(1.00) 		0.374
(1.00) 		0.61
(1.00) 		0.581
(1.00) 		0.411
(1.00)
ICOSLG 5 (1%) 971 0.771
(1.00) 		0.132
(1.00) 		0.01
(1.00) 		0.515
(1.00) 		0.515
(1.00) 		1
(1.00) 		0.716
(1.00) 		0.0568
(1.00)
PIK3R1 15 (2%) 961 0.147
(1.00) 		0.184
(1.00) 		0.695
(1.00) 		0.237
(1.00) 		0.631
(1.00) 		0.0116
(1.00) 		0.0883
(1.00) 		0.185
(1.00) 		0.83
(1.00) 		0.553
(1.00) 		0.118
(1.00) 		0.671
(1.00)
MR1 7 (1%) 969 0.215
(1.00) 		0.706
(1.00) 		0.861
(1.00) 		0.346
(1.00) 		1
(1.00) 		1
(1.00) 		0.278
(1.00) 		0.662
(1.00) 		0.789
(1.00) 		0.224
(1.00)
CABYR 6 (1%) 970 0.681
(1.00) 		0.34
(1.00) 		0.121
(1.00) 		0.00665
(1.00) 		0.0664
(1.00) 		0.279
(1.00) 		0.874
(1.00) 		0.277
(1.00)
AKT2 5 (1%) 971 0.144
(1.00) 		1
(1.00) 		0.621
(1.00) 		0.244
(1.00) 		0.517
(1.00) 		0.0903
(1.00) 		0.515
(1.00) 		0.543
(1.00) 		0.675
(1.00) 		0.439
(1.00)
ZBTB7C 5 (1%) 971 0.463
(1.00) 		0.801
(1.00) 		0.613
(1.00) 		0.821
(1.00) 		0.612
(1.00) 		1
(1.00)
RIBC1 4 (0%) 972 0.591
(1.00) 		0.379
(1.00) 		0.599
(1.00) 		0.0522
(1.00) 		0.55
(1.00) 		0.839
(1.00) 		0.817
(1.00) 		0.966
(1.00)
CEP57 6 (1%) 970 0.375
(1.00) 		0.276
(1.00) 		0.332
(1.00) 		0.2
(1.00) 		1
(1.00) 		0.87
(1.00) 		0.0791
(1.00) 		0.927
(1.00) 		0.0804
(1.00) 		0.0386
(1.00)
TARBP2 6 (1%) 970 0.662
(1.00) 		0.96
(1.00) 		0.109
(1.00) 		0.65
(1.00) 		0.166
(1.00) 		0.272
(1.00) 		0.122
(1.00) 		0.442
(1.00) 		0.134
(1.00) 		0.508
(1.00) 		0.494
(1.00) 		0.77
(1.00)
OXCT2 4 (0%) 972 0.449
(1.00) 		0.542
(1.00) 		0.826
(1.00) 		1
(1.00) 		0.218
(1.00) 		1
(1.00) 		0.7
(1.00)
ANKRD20A4 7 (1%) 969 0.193
(1.00) 		0.0958
(1.00) 		0.804
(1.00) 		0.877
(1.00) 		0.781
(1.00) 		0.655
(1.00) 		0.319
(1.00) 		0.277
(1.00) 		0.889
(1.00) 		0.794
(1.00) 		0.479
(1.00) 		0.0365
(1.00)
HIST1H3B 11 (1%) 965 0.553
(1.00) 		0.96
(1.00) 		0.676
(1.00) 		0.661
(1.00) 		0.628
(1.00) 		0.661
(1.00) 		1
(1.00) 		0.208
(1.00) 		1
(1.00) 		0.151
(1.00) 		0.839
(1.00) 		0.666
(1.00)
MED23 14 (1%) 962 0.1
(1.00) 		0.283
(1.00) 		0.175
(1.00) 		0.0432
(1.00) 		0.154
(1.00) 		0.678
(1.00) 		0.0284
(1.00) 		0.0319
(1.00) 		0.275
(1.00) 		0.508
(1.00) 		0.281
(1.00) 		0.415
(1.00)
MUC6 14 (1%) 962 0.0213
(1.00) 		0.613
(1.00) 		0.537
(1.00) 		0.172
(1.00) 		0.365
(1.00) 		0.984
(1.00) 		0.242
(1.00) 		0.372
(1.00) 		0.417
(1.00) 		0.105
(1.00) 		0.286
(1.00) 		0.0516
(1.00)
PSIP1 8 (1%) 968 0.69
(1.00) 		0.717
(1.00) 		0.516
(1.00) 		0.876
(1.00) 		0.692
(1.00) 		1
(1.00) 		0.326
(1.00) 		0.764
(1.00) 		0.616
(1.00) 		0.798
(1.00) 		0.859
(1.00) 		0.13
(1.00)
PCNXL2 21 (2%) 955 0.953
(1.00) 		0.938
(1.00) 		0.786
(1.00) 		0.908
(1.00) 		0.481
(1.00) 		0.319
(1.00) 		0.278
(1.00) 		0.91
(1.00) 		0.446
(1.00) 		0.661
(1.00) 		0.972
(1.00) 		0.824
(1.00)
SLC35B2 7 (1%) 969 1
(1.00) 		0.243
(1.00) 		0.89
(1.00) 		0.557
(1.00) 		0.56
(1.00) 		0.697
(1.00) 		0.742
(1.00) 		0.788
(1.00) 		0.672
(1.00) 		0.931
(1.00) 		0.855
(1.00)
ANGPT4 10 (1%) 966 0.204
(1.00) 		1
(1.00) 		0.333
(1.00) 		0.133
(1.00) 		0.518
(1.00) 		0.55
(1.00) 		0.308
(1.00) 		0.0735
(1.00) 		0.414
(1.00) 		0.376
(1.00) 		0.96
(1.00) 		0.419
(1.00)
MKL1 5 (1%) 971 0.901
(1.00) 		0.686
(1.00) 		0.351
(1.00) 		0.78
(1.00) 		0.0975
(1.00) 		0.716
(1.00) 		0.0722
(1.00) 		1
(1.00) 		0.166
(1.00)
NBPF9 5 (1%) 971 0.613
(1.00) 		0.624
(1.00) 		0.804
(1.00) 		0.865
(1.00) 		1
(1.00) 		0.513
(1.00) 		0.13
(1.00) 		0.715
(1.00) 		0.0262
(1.00)
PRICKLE3 11 (1%) 965 0.26
(1.00) 		0.0274
(1.00) 		1
(1.00) 		0.0464
(1.00) 		0.506
(1.00) 		0.588
(1.00) 		0.188
(1.00) 		0.152
(1.00) 		0.578
(1.00) 		0.324
(1.00) 		0.607
(1.00) 		0.672
(1.00)
CCDC82 6 (1%) 970 0.46
(1.00) 		0.0587
(1.00) 		0.713
(1.00) 		0.0381
(1.00) 		0.276
(1.00) 		0.361
(1.00) 		0.00238
(1.00) 		0.58
(1.00) 		0.63
(1.00) 		1
(1.00) 		1
(1.00)
CXCR3 6 (1%) 970 0.604
(1.00) 		0.79
(1.00) 		0.535
(1.00) 		0.799
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.522
(1.00) 		1
(1.00) 		0.969
(1.00) 		0.503
(1.00) 		0.525
(1.00)
TPP2 8 (1%) 968 0.0871
(1.00) 		0.945
(1.00) 		0.968
(1.00) 		0.678
(1.00) 		0.901
(1.00) 		0.86
(1.00) 		0.265
(1.00) 		0.714
(1.00) 		0.874
(1.00) 		0.593
(1.00)
C15ORF39 9 (1%) 967 0.606
(1.00) 		0.506
(1.00) 		0.00574
(1.00) 		0.0151
(1.00) 		0.643
(1.00) 		0.503
(1.00) 		0.00651
(1.00) 		0.00096
(1.00) 		0.00407
(1.00) 		0.00564
(1.00) 		0.403
(1.00) 		0.127
(1.00)
SDC1 3 (0%) 973 1
(1.00) 		0.308
(1.00) 		0.011
(1.00) 		0.79
(1.00) 		0.783
(1.00)
CASP8 12 (1%) 964 0.466
(1.00) 		0.395
(1.00) 		0.387
(1.00) 		0.343
(1.00) 		0.531
(1.00) 		0.683
(1.00) 		0.932
(1.00) 		0.337
(1.00) 		0.868
(1.00) 		0.751
(1.00) 		0.179
(1.00) 		1
(1.00)
TNRC6B 18 (2%) 958 0.521
(1.00) 		0.157
(1.00) 		0.652
(1.00) 		0.943
(1.00) 		0.508
(1.00) 		0.414
(1.00) 		0.86
(1.00) 		0.482
(1.00) 		0.908
(1.00) 		0.464
(1.00) 		0.654
(1.00) 		0.367
(1.00)
IRS4 11 (1%) 965 0.145
(1.00) 		0.782
(1.00) 		0.238
(1.00) 		0.639
(1.00) 		0.385
(1.00) 		0.957
(1.00) 		0.258
(1.00) 		0.289
(1.00) 		0.657
(1.00) 		0.876
(1.00) 		0.948
(1.00) 		0.822
(1.00)
RHOA 6 (1%) 970 0.904
(1.00) 		0.587
(1.00) 		0.747
(1.00) 		0.396
(1.00) 		0.113
(1.00) 		0.284
(1.00) 		0.419
(1.00) 		0.3
(1.00) 		1
(1.00) 		0.679
(1.00)
TTPAL 4 (0%) 972 0.239
(1.00) 		0.305
(1.00) 		0.18
(1.00) 		0.643
(1.00) 		0.453
(1.00) 		0.0379
(1.00) 		0.518
(1.00) 		0.203
(1.00) 		0.141
(1.00)
MLL4 13 (1%) 963 0.398
(1.00) 		0.51
(1.00) 		0.806
(1.00) 		0.591
(1.00) 		0.129
(1.00) 		0.395
(1.00) 		0.622
(1.00) 		0.129
(1.00) 		0.209
(1.00) 		0.00224
(1.00) 		0.353
(1.00) 		0.302
(1.00)
ATHL1 10 (1%) 966 0.868
(1.00) 		0.318
(1.00) 		0.108
(1.00) 		0.335
(1.00) 		1
(1.00) 		0.707
(1.00) 		0.209
(1.00) 		0.137
(1.00) 		0.196
(1.00) 		0.222
(1.00) 		0.34
(1.00) 		0.686
(1.00)
TMEM120B 5 (1%) 971 0.255
(1.00) 		0.248
(1.00) 		0.933
(1.00) 		1
(1.00) 		0.238
(1.00) 		0.872
(1.00) 		0.368
(1.00) 		0.686
(1.00) 		1
(1.00) 		1
(1.00)
LILRA6 6 (1%) 970 0.658
(1.00) 		0.221
(1.00) 		0.747
(1.00) 		0.208
(1.00) 		0.617
(1.00) 		0.868
(1.00) 		0.857
(1.00) 		1
(1.00) 		0.85
(1.00)
MLH1 6 (1%) 970 0.801
(1.00) 		0.731
(1.00) 		1
(1.00) 		0.869
(1.00) 		0.358
(1.00) 		0.856
(1.00) 		0.493
(1.00) 		0.629
(1.00) 		0.95
(1.00) 		0.823
(1.00)
NUP93 4 (0%) 972 0.0204
(1.00) 		0.381
(1.00) 		0.125
(1.00) 		0.81
(1.00) 		1
(1.00) 		0.783
(1.00)
ALDH1L1 9 (1%) 967 0.646
(1.00) 		0.92
(1.00) 		0.253
(1.00) 		0.529
(1.00) 		0.692
(1.00) 		0.508
(1.00) 		0.456
(1.00) 		0.42
(1.00) 		0.313
(1.00) 		0.866
(1.00) 		0.9
(1.00) 		0.823
(1.00)
LRIG2 7 (1%) 969 0.563
(1.00) 		0.0321
(1.00) 		0.261
(1.00) 		0.613
(1.00) 		0.206
(1.00) 		0.278
(1.00) 		0.417
(1.00) 		0.431
(1.00) 		0.379
(1.00) 		1
(1.00) 		0.855
(1.00) 		1
(1.00)
CCDC78 5 (1%) 971 0.565
(1.00) 		0.668
(1.00) 		0.844
(1.00) 		0.473
(1.00) 		1
(1.00) 		0.263
(1.00) 		0.846
(1.00) 		0.595
(1.00)
GAL3ST1 5 (1%) 971 0.759
(1.00) 		0.648
(1.00) 		1
(1.00) 		1
(1.00) 		0.0207
(1.00) 		0.773
(1.00) 		0.264
(1.00) 		0.59
(1.00)
FAM20C 4 (0%) 972 0.545
(1.00) 		0.442
(1.00) 		0.468
(1.00) 		0.2
(1.00) 		0.0998
(1.00) 		0.499
(1.00) 		0.77
(1.00)
RCC1 3 (0%) 973 0.716
(1.00) 		0.112
(1.00) 		0.202
(1.00) 		0.31
(1.00) 		0.444
(1.00) 		1
(1.00) 		1
(1.00)
SPTAN1 11 (1%) 965 0.786
(1.00) 		0.644
(1.00) 		0.356
(1.00) 		0.785
(1.00) 		0.113
(1.00) 		0.0494
(1.00) 		0.0195
(1.00) 		0.29
(1.00) 		0.163
(1.00) 		0.229
(1.00) 		0.345
(1.00) 		0.136
(1.00)
CHD4 19 (2%) 957 0.23
(1.00) 		0.358
(1.00) 		0.621
(1.00) 		0.0834
(1.00) 		0.194
(1.00) 		0.619
(1.00) 		0.139
(1.00) 		0.377
(1.00) 		0.237
(1.00) 		0.0783
(1.00) 		0.75
(1.00) 		0.308
(1.00)
ZFP36L2 7 (1%) 969 0.397
(1.00) 		1
(1.00) 		0.0755
(1.00) 		0.543
(1.00) 		1
(1.00) 		1
(1.00) 		0.529
(1.00) 		0.227
(1.00) 		0.693
(1.00) 		0.867
(1.00) 		0.36
(1.00) 		0.855
(1.00)
STAG2 13 (1%) 963 0.289
(1.00) 		0.213
(1.00) 		0.257
(1.00) 		0.198
(1.00) 		0.878
(1.00) 		0.203
(1.00) 		0.282
(1.00) 		0.895
(1.00) 		0.359
(1.00) 		0.39
(1.00) 		0.901
(1.00) 		0.685
(1.00)
HIST1H2BC 6 (1%) 970 0.372
(1.00) 		0.0459
(1.00) 		0.784
(1.00) 		0.349
(1.00) 		0.396
(1.00) 		0.246
(1.00) 		0.074
(1.00) 		0.689
(1.00) 		0.764
(1.00) 		0.805
(1.00) 		0.949
(1.00) 		0.823
(1.00)
BPHL 5 (1%) 971 0.47
(1.00) 		0.466
(1.00) 		0.621
(1.00) 		0.689
(1.00) 		0.464
(1.00) 		0.716
(1.00) 		0.427
(1.00) 		0.719
(1.00) 		0.324
(1.00)
ATP2A1 11 (1%) 965 1
(1.00) 		0.679
(1.00) 		0.673
(1.00) 		0.731
(1.00) 		1
(1.00) 		0.849
(1.00) 		0.853
(1.00) 		0.82
(1.00) 		0.979
(1.00) 		0.689
(1.00)
LRRC37A3 10 (1%) 966 0.0366
(1.00) 		0.55
(1.00) 		0.772
(1.00) 		0.886
(1.00) 		0.398
(1.00) 		0.77
(1.00) 		1
(1.00) 		0.881
(1.00) 		0.414
(1.00) 		0.758
(1.00) 		0.355
(1.00) 		0.665
(1.00)
EPDR1 5 (1%) 971 0.315
(1.00) 		0.82
(1.00) 		0.758
(1.00) 		0.555
(1.00) 		0.132
(1.00) 		0.844
(1.00) 		0.472
(1.00) 		0.553
(1.00) 		1
(1.00)
EXOC4 8 (1%) 968 0.0108
(1.00) 		0.658
(1.00) 		0.313
(1.00) 		0.0744
(1.00) 		0.0406
(1.00) 		0.0288
(1.00) 		0.342
(1.00) 		0.677
(1.00) 		0.626
(1.00) 		0.418
(1.00)
C11ORF49 5 (1%) 971 0.178
(1.00) 		0.379
(1.00) 		0.0021
(1.00) 		0.0267
(1.00) 		0.0661
(1.00) 		0.0339
(1.00)
ACTG1 8 (1%) 968 0.287
(1.00) 		0.394
(1.00) 		0.893
(1.00) 		0.0409
(1.00) 		0.72
(1.00) 		0.391
(1.00) 		0.814
(1.00) 		0.366
(1.00) 		0.146
(1.00) 		1
(1.00)
ANXA11 3 (0%) 973 0.667
(1.00) 		0.496
(1.00) 		0.455
(1.00) 		0.0611
(1.00) 		0.9
(1.00) 		0.6
(1.00) 		0.84
(1.00) 		0.316
(1.00) 		0.0042
(1.00)
PFKP 7 (1%) 969 0.408
(1.00) 		0.0134
(1.00) 		0.266
(1.00) 		0.696
(1.00) 		0.279
(1.00) 		0.225
(1.00) 		0.418
(1.00) 		0.138
(1.00) 		0.068
(1.00) 		0.355
(1.00)
GYLTL1B 4 (0%) 972 0.418
(1.00) 		0.719
(1.00) 		1
(1.00) 		0.692
(1.00) 		0.535
(1.00) 		0.67
(1.00) 		0.364
(1.00) 		0.554
(1.00) 		0.303
(1.00)
ANGPTL6 3 (0%) 973 0.861
(1.00) 		0.784
(1.00) 		0.708
(1.00)
SP3 7 (1%) 969 0.881
(1.00) 		0.554
(1.00) 		0.516
(1.00) 		0.91
(1.00) 		0.322
(1.00) 		0.592
(1.00) 		0.615
(1.00) 		0.301
(1.00) 		0.318
(1.00) 		1
(1.00)
RUFY1 6 (1%) 970 0.381
(1.00) 		0.732
(1.00) 		0.366
(1.00) 		0.163
(1.00) 		0.566
(1.00) 		0.288
(1.00) 		0.356
(1.00) 		0.0269
(1.00) 		0.9
(1.00) 		0.412
(1.00)
LIFR 9 (1%) 967 0.324
(1.00) 		0.482
(1.00) 		0.226
(1.00) 		0.277
(1.00) 		0.00831
(1.00) 		0.0727
(1.00) 		0.675
(1.00) 		0.162
(1.00) 		0.413
(1.00) 		0.77
(1.00) 		0.629
(1.00) 		1
(1.00)
OR6C76 7 (1%) 969 0.296
(1.00) 		0.345
(1.00) 		0.392
(1.00) 		0.735
(1.00) 		0.517
(1.00) 		0.711
(1.00) 		0.319
(1.00) 		0.389
(1.00) 		0.0827
(1.00) 		0.502
(1.00) 		0.155
(1.00) 		0.254
(1.00)
HCFC2 10 (1%) 966 0.031
(1.00) 		0.553
(1.00) 		0.184
(1.00) 		0.842
(1.00) 		0.0161
(1.00) 		0.422
(1.00) 		0.782
(1.00) 		1
(1.00) 		0.611
(1.00) 		0.476
(1.00)
ACOT2 5 (1%) 971 0.183
(1.00) 		0.343
(1.00) 		0.35
(1.00) 		0.108
(1.00) 		0.611
(1.00) 		0.948
(1.00) 		1
(1.00) 		0.381
(1.00)
KIAA0430 15 (2%) 961 0.673
(1.00) 		0.75
(1.00) 		0.2
(1.00) 		0.151
(1.00) 		0.325
(1.00) 		0.279
(1.00) 		0.792
(1.00) 		0.215
(1.00) 		0.366
(1.00) 		0.396
(1.00) 		0.161
(1.00) 		0.569
(1.00)
GTF2IRD2 8 (1%) 968 0.571
(1.00) 		0.96
(1.00) 		0.08
(1.00) 		0.522
(1.00) 		0.385
(1.00) 		0.957
(1.00) 		0.521
(1.00) 		0.658
(1.00) 		0.789
(1.00) 		0.162
(1.00) 		0.129
(1.00) 		0.438
(1.00)
NPAS4 9 (1%) 967 0.672
(1.00) 		0.147
(1.00) 		0.193
(1.00) 		0.541
(1.00) 		0.836
(1.00) 		0.882
(1.00) 		0.327
(1.00) 		0.231
(1.00) 		0.143
(1.00) 		0.0832
(1.00) 		0.241
(1.00) 		0.822
(1.00)
JAK1 11 (1%) 965 0.496
(1.00) 		0.476
(1.00) 		0.735
(1.00) 		0.463
(1.00) 		1
(1.00) 		0.732
(1.00) 		0.0634
(1.00) 		0.36
(1.00) 		0.0154
(1.00) 		0.619
(1.00) 		0.216
(1.00) 		0.171
(1.00)
FGFR3 4 (0%) 972 0.0769
(1.00) 		0.922
(1.00) 		0.892
(1.00) 		0.438
(1.00) 		0.482
(1.00) 		0.202
(1.00) 		0.203
(1.00)
FBXW7 15 (2%) 961 0.814
(1.00) 		0.533
(1.00) 		0.185
(1.00) 		0.00377
(1.00) 		0.78
(1.00) 		0.549
(1.00) 		0.238
(1.00) 		0.0778
(1.00) 		0.283
(1.00) 		0.0517
(1.00) 		0.0618
(1.00) 		0.897
(1.00)
OR2T8 6 (1%) 970 0.781
(1.00) 		0.693
(1.00) 		0.651
(1.00) 		0.546
(1.00) 		0.107
(1.00) 		0.591
(1.00) 		0.167
(1.00) 		0.419
(1.00)
SHANK2 15 (2%) 961 0.104
(1.00) 		0.198
(1.00) 		0.889
(1.00) 		0.129
(1.00) 		0.0673
(1.00) 		0.125
(1.00) 		0.379
(1.00) 		0.57
(1.00) 		0.548
(1.00) 		0.432
(1.00) 		0.077
(1.00) 		0.183
(1.00)
TRMT2A 7 (1%) 969 0.954
(1.00) 		0.92
(1.00) 		0.584
(1.00) 		0.542
(1.00) 		0.392
(1.00) 		0.613
(1.00) 		1
(1.00) 		0.468
(1.00) 		0.427
(1.00) 		0.474
(1.00) 		0.552
(1.00) 		0.192
(1.00)
SHISA4 5 (1%) 971 0.0857
(1.00) 		0.732
(1.00) 		0.0848
(1.00) 		0.116
(1.00) 		0.843
(1.00) 		0.281
(1.00) 		0.244
(1.00) 		1
(1.00)
CCNL2 7 (1%) 969 0.864
(1.00) 		0.854
(1.00) 		1
(1.00) 		0.349
(1.00) 		0.53
(1.00) 		0.663
(1.00) 		0.613
(1.00) 		0.448
(1.00) 		0.948
(1.00) 		0.822
(1.00)
SEC14L5 7 (1%) 969 0.216
(1.00) 		0.00226
(1.00) 		0.568
(1.00) 		0.65
(1.00) 		0.394
(1.00) 		0.104
(1.00) 		0.0484
(1.00) 		0.0393
(1.00) 		0.00318
(1.00) 		0.182
(1.00) 		0.288
(1.00) 		1
(1.00)
SARM1 6 (1%) 970 0.561
(1.00) 		0.117
(1.00) 		0.683
(1.00) 		0.642
(1.00) 		0.0377
(1.00) 		0.122
(1.00) 		0.0184
(1.00) 		0.195
(1.00) 		0.161
(1.00) 		0.54
(1.00) 		0.303
(1.00)
CLEC18B 6 (1%) 970 0.564
(1.00) 		1
(1.00) 		0.65
(1.00) 		0.677
(1.00) 		0.398
(1.00) 		0.544
(1.00) 		0.648
(1.00) 		0.793
(1.00) 		0.674
(1.00) 		0.49
(1.00) 		0.857
(1.00) 		0.306
(1.00)
GIPC3 4 (0%) 972 0.831
(1.00) 		0.496
(1.00) 		0.457
(1.00) 		1
(1.00) 		0.171
(1.00) 		0.188
(1.00) 		0.107
(1.00) 		0.819
(1.00) 		0.312
(1.00)
HPS3 9 (1%) 967 0.121
(1.00) 		0.509
(1.00) 		0.279
(1.00) 		0.208
(1.00) 		0.111
(1.00) 		0.0492
(1.00) 		0.00535
(1.00) 		0.00419
(1.00) 		0.0097
(1.00) 		0.172
(1.00) 		0.0605
(1.00) 		0.577
(1.00)
OR2T35 4 (0%) 972 1
(1.00) 		0.0968
(1.00) 		0.828
(1.00) 		0.815
(1.00) 		0.506
(1.00) 		0.817
(1.00) 		0.46
(1.00)
PPIL2 6 (1%) 970 0.436
(1.00) 		0.677
(1.00) 		0.417
(1.00) 		0.812
(1.00) 		0.516
(1.00) 		0.956
(1.00) 		0.188
(1.00) 		0.039
(1.00)
ZNF397 7 (1%) 969 0.0716
(1.00) 		0.85
(1.00) 		0.554
(1.00) 		0.593
(1.00) 		1
(1.00) 		0.564
(1.00) 		0.689
(1.00) 		0.719
(1.00) 		0.604
(1.00) 		0.672
(1.00)
MLL 17 (2%) 959 0.648
(1.00) 		0.644
(1.00) 		0.265
(1.00) 		0.233
(1.00) 		0.775
(1.00) 		0.254
(1.00) 		0.162
(1.00) 		0.119
(1.00) 		0.0698
(1.00) 		0.426
(1.00) 		0.278
(1.00) 		0.0692
(1.00)
ACVR1B 7 (1%) 969 0.889
(1.00) 		1
(1.00) 		0.901
(1.00) 		0.87
(1.00) 		0.559
(1.00) 		0.0973
(1.00) 		0.18
(1.00) 		0.214
(1.00) 		0.239
(1.00) 		0.163
(1.00) 		0.539
(1.00) 		0.301
(1.00)
GPR158 3 (0%) 973 1
(1.00) 		0.311
(1.00) 		0.44
(1.00) 		0.792
(1.00) 		0.572
(1.00)
ARHGEF15 9 (1%) 967 0.465
(1.00) 		0.201
(1.00) 		0.761
(1.00) 		0.542
(1.00) 		0.892
(1.00) 		0.746
(1.00) 		0.326
(1.00) 		0.21
(1.00) 		0.138
(1.00) 		0.232
(1.00) 		0.857
(1.00) 		0.305
(1.00)
TXNDC2 4 (0%) 972 0.5
(1.00) 		0.617
(1.00) 		0.124
(1.00) 		0.205
(1.00) 		0.203
(1.00) 		0.447
(1.00)
COL9A2 3 (0%) 973 0.359
(1.00) 		0.216
(1.00) 		0.308
(1.00) 		0.294
(1.00)
PARP4 12 (1%) 964 0.734
(1.00) 		0.82
(1.00) 		0.351
(1.00) 		0.15
(1.00) 		0.272
(1.00) 		0.177
(1.00) 		0.0283
(1.00) 		0.232
(1.00) 		0.0582
(1.00) 		0.117
(1.00)
'PIK3CA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S1.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PIK3CA MUTATED 7 13 23 8 61 23 8 21
PIK3CA WILD-TYPE 14 25 91 89 47 50 11 18

Figure S1.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PIK3CA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S2.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PIK3CA MUTATED 19 70 39 5 31
PIK3CA WILD-TYPE 77 82 77 84 25

Figure S2.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S3.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
PIK3CA MUTATED 56 149 48 49 12
PIK3CA WILD-TYPE 179 217 34 189 29

Figure S3.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIK3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S4.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PIK3CA MUTATED 7 81 53 31 36
PIK3CA WILD-TYPE 109 100 104 52 75

Figure S4.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PIK3CA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.22

Table S5.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PIK3CA MUTATED 27 49 46
PIK3CA WILD-TYPE 119 80 72

Figure S5.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PIK3CA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S6.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PIK3CA MUTATED 30 51 12 23 6
PIK3CA WILD-TYPE 29 58 78 81 25

Figure S6.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S7.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
PIK3CA MUTATED 177 41 98
PIK3CA WILD-TYPE 315 232 110

Figure S7.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S8.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
PIK3CA MUTATED 52 55 129 57 7 16
PIK3CA WILD-TYPE 148 97 142 73 161 36

Figure S8.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S9.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
PIK3CA MUTATED 55 83 176
PIK3CA WILD-TYPE 242 122 279

Figure S9.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S10.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
PIK3CA MUTATED 69 33 125 66 15 6
PIK3CA WILD-TYPE 154 109 148 56 62 114

Figure S10.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S11.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
PIK3CA MUTATED 57 14 27 34 50
PIK3CA WILD-TYPE 121 106 39 58 62

Figure S11.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S12.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
PIK3CA MUTATED 52 75 55
PIK3CA WILD-TYPE 227 106 53

Figure S12.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S13.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TP53 MUTATED 7 6 18 73 6 41 7 6
TP53 WILD-TYPE 14 32 96 24 102 32 12 33

Figure S13.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TP53 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S14.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TP53 MUTATED 12 17 65 68 2
TP53 WILD-TYPE 84 135 51 21 54

Figure S14.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S15.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
TP53 MUTATED 53 50 8 170 11
TP53 WILD-TYPE 182 316 74 68 30

Figure S15.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S16.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TP53 MUTATED 85 13 48 11 33
TP53 WILD-TYPE 31 168 109 72 78

Figure S16.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S17.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TP53 MUTATED 94 10 33
TP53 WILD-TYPE 52 119 85

Figure S17.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S18.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TP53 MUTATED 4 18 67 30 18
TP53 WILD-TYPE 55 91 23 74 13

Figure S18.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S19.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
TP53 MUTATED 82 195 17
TP53 WILD-TYPE 410 78 191

Figure S19.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S20.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
TP53 MUTATED 24 65 38 3 125 39
TP53 WILD-TYPE 176 87 233 127 43 13

Figure S20.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S21.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
TP53 MUTATED 191 29 68
TP53 WILD-TYPE 106 176 387

Figure S21.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S22.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
TP53 MUTATED 64 84 31 15 4 90
TP53 WILD-TYPE 159 58 242 107 73 30

Figure S22.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S23.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
TP53 MUTATED 30 90 9 18 24
TP53 WILD-TYPE 148 30 57 74 88

Figure S23.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S24.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
TP53 MUTATED 120 35 16
TP53 WILD-TYPE 159 146 92

Figure S24.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.49

Table S25.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CDH1 MUTATED 0 6 2 1 10 6 1 7
CDH1 WILD-TYPE 21 32 112 96 98 67 18 32

Figure S25.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00641 (Fisher's exact test), Q value = 1

Table S26.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CDH1 MUTATED 4 19 7 1 2
CDH1 WILD-TYPE 92 133 109 88 54

Figure S26.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S27.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
CDH1 MUTATED 12 62 22 3 5
CDH1 WILD-TYPE 223 304 60 235 36

Figure S27.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S28.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CDH1 MUTATED 0 25 19 18 20
CDH1 WILD-TYPE 116 156 138 65 91

Figure S28.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00798 (Fisher's exact test), Q value = 1

Table S29.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CDH1 MUTATED 5 4 14
CDH1 WILD-TYPE 141 125 104

Figure S29.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.02 (Fisher's exact test), Q value = 1

Table S30.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CDH1 MUTATED 1 12 1 7 2
CDH1 WILD-TYPE 58 97 89 97 29

Figure S30.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S31.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
CDH1 MUTATED 42 7 57
CDH1 WILD-TYPE 450 266 151

Figure S31.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S32.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
CDH1 MUTATED 8 11 70 13 1 3
CDH1 WILD-TYPE 192 141 201 117 167 49

Figure S32.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S33.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
CDH1 MUTATED 6 59 39
CDH1 WILD-TYPE 291 146 416

Figure S33.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S34.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
CDH1 MUTATED 8 3 75 16 2 0
CDH1 WILD-TYPE 215 139 198 106 75 120

Figure S34.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S35.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
CDH1 MUTATED 9 1 20 12 32
CDH1 WILD-TYPE 169 119 46 80 80

Figure S35.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S36.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
CDH1 MUTATED 9 55 10
CDH1 WILD-TYPE 270 126 98

Figure S36.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S37.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
GATA3 MUTATED 1 6 27 2 18 4 2 0
GATA3 WILD-TYPE 20 32 87 95 90 69 17 39

Figure S37.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GATA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S38.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
GATA3 MUTATED 28 22 5 1 4
GATA3 WILD-TYPE 68 130 111 88 52

Figure S38.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00243 (Fisher's exact test), Q value = 1

Table S39.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
GATA3 MUTATED 32 43 9 11 1
GATA3 WILD-TYPE 203 323 73 227 40

Figure S39.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GATA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.094

Table S40.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
GATA3 MUTATED 0 22 19 11 5
GATA3 WILD-TYPE 116 159 138 72 106

Figure S40.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GATA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 1

Table S41.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
GATA3 MUTATED 12 24 10
GATA3 WILD-TYPE 134 105 108

Figure S41.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GATA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.2

Table S42.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
GATA3 MUTATED 12 8 2 21 3
GATA3 WILD-TYPE 47 101 88 83 28

Figure S42.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S43.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
GATA3 MUTATED 76 3 17
GATA3 WILD-TYPE 416 270 191

Figure S43.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GATA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S44.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
GATA3 MUTATED 37 14 21 24 0 0
GATA3 WILD-TYPE 163 138 250 106 168 52

Figure S44.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S45.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
GATA3 MUTATED 15 8 72
GATA3 WILD-TYPE 282 197 383

Figure S45.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S46.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
GATA3 MUTATED 25 10 20 24 16 0
GATA3 WILD-TYPE 198 132 253 98 61 120

Figure S46.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.031

Table S47.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
GATA3 MUTATED 33 0 5 10 9
GATA3 WILD-TYPE 145 120 61 82 103

Figure S47.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S48.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
GATA3 MUTATED 30 12 15
GATA3 WILD-TYPE 249 169 93
'MAP3K1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.13

Table S49.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MAP3K1 MUTATED 5 1 12 1 16 1 0 3
MAP3K1 WILD-TYPE 16 37 102 96 92 72 19 36

Figure S48.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MAP3K1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.19

Table S50.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MAP3K1 MUTATED 9 13 4 1 12
MAP3K1 WILD-TYPE 87 139 112 88 44

Figure S49.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-04 (Fisher's exact test), Q value = 1

Table S51.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
MAP3K1 MUTATED 14 42 6 6 2
MAP3K1 WILD-TYPE 221 324 76 232 39

Figure S50.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP3K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0486 (Fisher's exact test), Q value = 1

Table S52.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MAP3K1 MUTATED 3 18 5 5 7
MAP3K1 WILD-TYPE 113 163 152 78 104

Figure S51.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MAP3K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.64

Table S53.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MAP3K1 MUTATED 4 20 12
MAP3K1 WILD-TYPE 142 109 106

Figure S52.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MAP3K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.031

Table S54.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MAP3K1 MUTATED 16 14 1 5 0
MAP3K1 WILD-TYPE 43 95 89 99 31

Figure S53.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00086 (Fisher's exact test), Q value = 1

Table S55.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
MAP3K1 MUTATED 44 7 19
MAP3K1 WILD-TYPE 448 266 189

Figure S54.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAP3K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.49

Table S56.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
MAP3K1 MUTATED 24 8 22 13 3 0
MAP3K1 WILD-TYPE 176 144 249 117 165 52

Figure S55.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.13

Table S57.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
MAP3K1 MUTATED 7 18 45
MAP3K1 WILD-TYPE 290 187 410

Figure S56.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00027 (Fisher's exact test), Q value = 0.42

Table S58.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
MAP3K1 MUTATED 11 5 28 12 12 2
MAP3K1 WILD-TYPE 212 137 245 110 65 118

Figure S57.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S59.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
MAP3K1 MUTATED 15 3 3 10 7
MAP3K1 WILD-TYPE 163 117 63 82 105
'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S60.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
MAP3K1 MUTATED 15 11 12
MAP3K1 WILD-TYPE 264 170 96
'RUNX1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 1

Table S61.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RUNX1 MUTATED 3 1 3 0 5 2 0 4
RUNX1 WILD-TYPE 18 37 111 97 103 71 19 35

Figure S58.  Get High-res Image Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RUNX1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0873 (Fisher's exact test), Q value = 1

Table S62.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RUNX1 MUTATED 3 10 3 0 2
RUNX1 WILD-TYPE 93 142 113 89 54
'RUNX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00306 (Fisher's exact test), Q value = 1

Table S63.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
RUNX1 MUTATED 3 17 6 2 0
RUNX1 WILD-TYPE 232 349 76 236 41

Figure S59.  Get High-res Image Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RUNX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S64.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RUNX1 MUTATED 2 3 4 6 4
RUNX1 WILD-TYPE 114 178 153 77 107
'RUNX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S65.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
RUNX1 MUTATED 4 3 3
RUNX1 WILD-TYPE 142 126 115
'RUNX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S66.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
RUNX1 MUTATED 1 4 0 4 1
RUNX1 WILD-TYPE 58 105 90 100 30
'RUNX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 1

Table S67.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
RUNX1 MUTATED 15 4 10
RUNX1 WILD-TYPE 477 269 198
'RUNX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00794 (Fisher's exact test), Q value = 1

Table S68.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
RUNX1 MUTATED 2 9 13 4 1 0
RUNX1 WILD-TYPE 198 143 258 126 167 52

Figure S60.  Get High-res Image Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RUNX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 1

Table S69.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
RUNX1 MUTATED 3 7 19
RUNX1 WILD-TYPE 294 198 436

Figure S61.  Get High-res Image Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RUNX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S70.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
RUNX1 MUTATED 7 2 11 6 2 1
RUNX1 WILD-TYPE 216 140 262 116 75 119
'RUNX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S71.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
RUNX1 MUTATED 5 2 1 6 5
RUNX1 WILD-TYPE 173 118 65 86 107
'RUNX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S72.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
RUNX1 MUTATED 7 8 4
RUNX1 WILD-TYPE 272 173 104
'PTEN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S73.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PTEN MUTATED 2 2 3 1 4 1 0 0
PTEN WILD-TYPE 19 36 111 96 104 72 19 39
'PTEN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S74.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PTEN MUTATED 3 5 3 1 1
PTEN WILD-TYPE 93 147 113 88 55
'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S75.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
PTEN MUTATED 6 14 6 8 1
PTEN WILD-TYPE 229 352 76 230 40
'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S76.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PTEN MUTATED 6 5 9 3 6
PTEN WILD-TYPE 110 176 148 80 105
'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S77.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PTEN MUTATED 3 4 3
PTEN WILD-TYPE 143 125 115
'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S78.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PTEN MUTATED 2 3 2 3 0
PTEN WILD-TYPE 57 106 88 101 31
'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S79.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
PTEN MUTATED 16 10 9
PTEN WILD-TYPE 476 263 199
'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S80.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
PTEN MUTATED 3 6 12 6 5 3
PTEN WILD-TYPE 197 146 259 124 163 49
'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0461 (Fisher's exact test), Q value = 1

Table S81.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
PTEN MUTATED 6 13 16
PTEN WILD-TYPE 291 192 439

Figure S62.  Get High-res Image Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S82.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
PTEN MUTATED 8 6 11 5 1 4
PTEN WILD-TYPE 215 136 262 117 76 116
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S83.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
PTEN MUTATED 7 3 3 5 7
PTEN WILD-TYPE 171 117 63 87 105
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S84.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
PTEN MUTATED 11 9 5
PTEN WILD-TYPE 268 172 103
'ARID1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S85.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ARID1A MUTATED 3 1 4 2 3 1 0 1
ARID1A WILD-TYPE 18 37 110 95 105 72 19 38
'ARID1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S86.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ARID1A MUTATED 4 5 3 2 1
ARID1A WILD-TYPE 92 147 113 87 55
'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0345 (Fisher's exact test), Q value = 1

Table S87.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ARID1A MUTATED 12 9 0 3 2
ARID1A WILD-TYPE 223 357 82 235 39

Figure S63.  Get High-res Image Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S88.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ARID1A MUTATED 1 6 6 4 1
ARID1A WILD-TYPE 115 175 151 79 110
'ARID1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S89.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ARID1A MUTATED 4 3 3
ARID1A WILD-TYPE 142 126 115
'ARID1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S90.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ARID1A MUTATED 2 1 1 4 2
ARID1A WILD-TYPE 57 108 89 100 29
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S91.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ARID1A MUTATED 18 5 4
ARID1A WILD-TYPE 474 268 204
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S92.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ARID1A MUTATED 7 5 9 3 2 1
ARID1A WILD-TYPE 193 147 262 127 166 51
'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S93.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ARID1A MUTATED 4 7 16
ARID1A WILD-TYPE 293 198 439
'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S94.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ARID1A MUTATED 8 6 6 1 4 2
ARID1A WILD-TYPE 215 136 267 121 73 118
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S95.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ARID1A MUTATED 5 0 3 1 2
ARID1A WILD-TYPE 173 120 63 91 110
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S96.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ARID1A MUTATED 4 5 2
ARID1A WILD-TYPE 275 176 106
'CBFB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0974 (Fisher's exact test), Q value = 1

Table S97.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CBFB MUTATED 1 1 0 1 6 2 0 0
CBFB WILD-TYPE 20 37 114 96 102 71 19 39
'CBFB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S98.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CBFB MUTATED 0 6 2 1 2
CBFB WILD-TYPE 96 146 114 88 54
'CBFB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0359 (Fisher's exact test), Q value = 1

Table S99.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
CBFB MUTATED 5 13 4 1 0
CBFB WILD-TYPE 230 353 78 237 41

Figure S64.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CBFB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S100.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CBFB MUTATED 0 7 4 3 1
CBFB WILD-TYPE 116 174 153 80 110
'CBFB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S101.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CBFB MUTATED 1 6 3
CBFB WILD-TYPE 145 123 115
'CBFB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0809 (Fisher's exact test), Q value = 1

Table S102.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CBFB MUTATED 5 2 2 1 0
CBFB WILD-TYPE 54 107 88 103 31
'CBFB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 1

Table S103.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
CBFB MUTATED 16 2 5
CBFB WILD-TYPE 476 271 203
'CBFB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S104.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
CBFB MUTATED 6 3 5 7 1 1
CBFB WILD-TYPE 194 149 266 123 167 51
'CBFB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00205 (Fisher's exact test), Q value = 1

Table S105.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
CBFB MUTATED 1 3 18
CBFB WILD-TYPE 296 202 437

Figure S65.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CBFB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S106.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
CBFB MUTATED 1 0 7 13 1 0
CBFB WILD-TYPE 222 142 266 109 76 120

Figure S66.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CBFB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 1

Table S107.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
CBFB MUTATED 6 0 1 6 1
CBFB WILD-TYPE 172 120 65 86 111

Figure S67.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CBFB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.49

Table S108.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
CBFB MUTATED 4 1 9
CBFB WILD-TYPE 275 180 99

Figure S68.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S109.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MLL3 MUTATED 1 1 8 5 12 4 1 4
MLL3 WILD-TYPE 20 37 106 92 96 69 18 35
'MLL3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S110.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MLL3 MUTATED 6 10 6 5 9
MLL3 WILD-TYPE 90 142 110 84 47
'MLL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S111.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
MLL3 MUTATED 16 30 6 13 2
MLL3 WILD-TYPE 219 336 76 225 39
'MLL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S112.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MLL3 MUTATED 5 18 14 7 6
MLL3 WILD-TYPE 111 163 143 76 105
'MLL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S113.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MLL3 MUTATED 10 6 9
MLL3 WILD-TYPE 136 123 109
'MLL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S114.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MLL3 MUTATED 6 6 7 4 2
MLL3 WILD-TYPE 53 103 83 100 29
'MLL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 1

Table S115.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
MLL3 MUTATED 43 12 14
MLL3 WILD-TYPE 449 261 194
'MLL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S116.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
MLL3 MUTATED 13 15 15 15 8 3
MLL3 WILD-TYPE 187 137 256 115 160 49
'MLL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 1

Table S117.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
MLL3 MUTATED 13 13 40
MLL3 WILD-TYPE 284 192 415
'MLL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 1

Table S118.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
MLL3 MUTATED 12 8 21 16 5 4
MLL3 WILD-TYPE 211 134 252 106 72 116
'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S119.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
MLL3 MUTATED 16 4 4 5 8
MLL3 WILD-TYPE 162 116 62 87 104
'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S120.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
MLL3 MUTATED 14 14 9
MLL3 WILD-TYPE 265 167 99
'FOXA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S121.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
FOXA1 MUTATED 0 0 3 0 1 2 0 2
FOXA1 WILD-TYPE 21 38 111 97 107 71 19 37
'FOXA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S122.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
FOXA1 MUTATED 3 2 2 0 1
FOXA1 WILD-TYPE 93 150 114 89 55
'FOXA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S123.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
FOXA1 MUTATED 5 14 2 2 0
FOXA1 WILD-TYPE 230 352 80 236 41
'FOXA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 1

Table S124.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
FOXA1 MUTATED 0 5 9 1 2
FOXA1 WILD-TYPE 116 176 148 82 109

Figure S69.  Get High-res Image Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FOXA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S125.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
FOXA1 MUTATED 2 3 2
FOXA1 WILD-TYPE 144 126 116
'FOXA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S126.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
FOXA1 MUTATED 1 2 1 3 0
FOXA1 WILD-TYPE 58 107 89 101 31
'FOXA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 1

Table S127.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
FOXA1 MUTATED 12 2 9
FOXA1 WILD-TYPE 480 271 199

Figure S70.  Get High-res Image Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FOXA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S128.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
FOXA1 MUTATED 3 5 10 4 1 0
FOXA1 WILD-TYPE 197 147 261 126 167 52
'FOXA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.089 (Fisher's exact test), Q value = 1

Table S129.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
FOXA1 MUTATED 3 8 12
FOXA1 WILD-TYPE 294 197 443
'FOXA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S130.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
FOXA1 MUTATED 3 2 10 6 1 1
FOXA1 WILD-TYPE 220 140 263 116 76 119
'FOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S131.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
FOXA1 MUTATED 6 0 3 2 3
FOXA1 WILD-TYPE 172 120 63 90 109
'FOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S132.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
FOXA1 MUTATED 5 6 3
FOXA1 WILD-TYPE 274 175 105
'MAP2K4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 1

Table S133.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MAP2K4 MUTATED 0 3 3 0 8 2 1 2
MAP2K4 WILD-TYPE 21 35 111 97 100 71 18 37
'MAP2K4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00411 (Fisher's exact test), Q value = 1

Table S134.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MAP2K4 MUTATED 2 9 2 0 6
MAP2K4 WILD-TYPE 94 143 114 89 50

Figure S71.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MAP2K4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S135.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
MAP2K4 MUTATED 7 14 6 3 2
MAP2K4 WILD-TYPE 228 352 76 235 39
'MAP2K4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S136.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MAP2K4 MUTATED 1 13 7 2 2
MAP2K4 WILD-TYPE 115 168 150 81 109

Figure S72.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MAP2K4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00215 (Fisher's exact test), Q value = 1

Table S137.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MAP2K4 MUTATED 0 5 8
MAP2K4 WILD-TYPE 146 124 110

Figure S73.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MAP2K4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S138.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MAP2K4 MUTATED 2 7 1 3 0
MAP2K4 WILD-TYPE 57 102 89 101 31
'MAP2K4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 6e-04 (Fisher's exact test), Q value = 0.94

Table S139.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
MAP2K4 MUTATED 25 1 6
MAP2K4 WILD-TYPE 467 272 202

Figure S74.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAP2K4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00132 (Fisher's exact test), Q value = 1

Table S140.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
MAP2K4 MUTATED 15 4 10 3 0 0
MAP2K4 WILD-TYPE 185 148 261 127 168 52

Figure S75.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.49

Table S141.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
MAP2K4 MUTATED 2 4 26
MAP2K4 WILD-TYPE 295 201 429

Figure S76.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0213 (Fisher's exact test), Q value = 1

Table S142.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
MAP2K4 MUTATED 10 2 8 8 4 0
MAP2K4 WILD-TYPE 213 140 265 114 73 120

Figure S77.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 1

Table S143.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
MAP2K4 MUTATED 11 0 0 3 3
MAP2K4 WILD-TYPE 167 120 66 89 109

Figure S78.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 1

Table S144.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
MAP2K4 MUTATED 7 2 8
MAP2K4 WILD-TYPE 272 179 100

Figure S79.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RBMX MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S145.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RBMX MUTATED 0 0 0 3 2 0 0 1
RBMX WILD-TYPE 21 38 114 94 106 73 19 38
'RBMX MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S146.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RBMX MUTATED 0 3 0 3 0
RBMX WILD-TYPE 96 149 116 86 56
'RBMX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0916 (Fisher's exact test), Q value = 1

Table S147.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
RBMX MUTATED 0 6 1 6 1
RBMX WILD-TYPE 235 360 81 232 40
'RBMX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S148.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RBMX MUTATED 3 0 4 2 2
RBMX WILD-TYPE 113 181 153 81 109
'RBMX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S149.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
RBMX MUTATED 2 2 0
RBMX WILD-TYPE 144 127 118
'RBMX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S150.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
RBMX MUTATED 1 1 2 0 0
RBMX WILD-TYPE 58 108 88 104 31
'RBMX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S151.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
RBMX MUTATED 4 7 3
RBMX WILD-TYPE 488 266 205
'RBMX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S152.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
RBMX MUTATED 1 1 5 1 5 1
RBMX WILD-TYPE 199 151 266 129 163 51
'RBMX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S153.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
RBMX MUTATED 7 2 5
RBMX WILD-TYPE 290 203 450
'RBMX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S154.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
RBMX MUTATED 3 4 4 1 0 2
RBMX WILD-TYPE 220 138 269 121 77 118
'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0485 (Fisher's exact test), Q value = 1

Table S155.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
RBMX MUTATED 0 4 0 1 3
RBMX WILD-TYPE 178 116 66 91 109

Figure S80.  Get High-res Image Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S156.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
RBMX MUTATED 4 3 1
RBMX WILD-TYPE 275 178 107
'TBX3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S157.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TBX3 MUTATED 0 1 3 2 7 1 0 2
TBX3 WILD-TYPE 21 37 111 95 101 72 19 37
'TBX3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S158.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TBX3 MUTATED 3 6 3 1 3
TBX3 WILD-TYPE 93 146 113 88 53
'TBX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S159.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
TBX3 MUTATED 6 13 4 3 1
TBX3 WILD-TYPE 229 353 78 235 40
'TBX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S160.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TBX3 MUTATED 1 7 2 3 3
TBX3 WILD-TYPE 115 174 155 80 108
'TBX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 1

Table S161.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TBX3 MUTATED 1 3 6
TBX3 WILD-TYPE 145 126 112
'TBX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S162.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TBX3 MUTATED 2 3 2 3 0
TBX3 WILD-TYPE 57 106 88 101 31
'TBX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 1

Table S163.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
TBX3 MUTATED 14 3 10
TBX3 WILD-TYPE 478 270 198
'TBX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S164.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
TBX3 MUTATED 5 2 13 4 2 1
TBX3 WILD-TYPE 195 150 258 126 166 51
'TBX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S165.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
TBX3 MUTATED 5 8 14
TBX3 WILD-TYPE 292 197 441
'TBX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0511 (Fisher's exact test), Q value = 1

Table S166.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
TBX3 MUTATED 4 2 13 2 5 1
TBX3 WILD-TYPE 219 140 260 120 72 119
'TBX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S167.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
TBX3 MUTATED 3 2 3 2 4
TBX3 WILD-TYPE 175 118 63 90 108
'TBX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S168.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
TBX3 MUTATED 6 6 2
TBX3 WILD-TYPE 273 175 106
'THEM5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S169.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
THEM5 MUTATED 1 0 1 0 3 0 0 0
THEM5 WILD-TYPE 20 38 113 97 105 73 19 39
'THEM5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S170.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
THEM5 MUTATED 1 2 1 0 1
THEM5 WILD-TYPE 95 150 115 89 55
'THEM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S171.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
THEM5 MUTATED 2 2 3 3 1
THEM5 WILD-TYPE 233 364 79 235 40
'THEM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S172.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
THEM5 MUTATED 0 1 3 1 3
THEM5 WILD-TYPE 116 180 154 82 108
'THEM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S173.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
THEM5 MUTATED 1 3 0
THEM5 WILD-TYPE 145 126 118
'THEM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S174.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
THEM5 MUTATED 2 0 0 2 0
THEM5 WILD-TYPE 57 109 90 102 31
'THEM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S175.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
THEM5 MUTATED 5 2 3
THEM5 WILD-TYPE 487 271 205
'THEM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S176.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
THEM5 MUTATED 3 2 3 1 1 0
THEM5 WILD-TYPE 197 150 268 129 167 52
'THEM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S177.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
THEM5 MUTATED 2 4 4
THEM5 WILD-TYPE 295 201 451
'THEM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S178.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
THEM5 MUTATED 4 0 3 1 1 1
THEM5 WILD-TYPE 219 142 270 121 76 119
'THEM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 1

Table S179.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
THEM5 MUTATED 0 1 2 0 3
THEM5 WILD-TYPE 178 119 64 92 109

Figure S81.  Get High-res Image Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'THEM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S180.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
THEM5 MUTATED 2 4 0
THEM5 WILD-TYPE 277 177 108
'RB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S181.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RB1 MUTATED 0 0 2 4 2 2 0 0
RB1 WILD-TYPE 21 38 112 93 106 71 19 39
'RB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S182.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RB1 MUTATED 2 1 4 3 0
RB1 WILD-TYPE 94 151 112 86 56
'RB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S183.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
RB1 MUTATED 4 4 4 7 0
RB1 WILD-TYPE 231 362 78 231 41
'RB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S184.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RB1 MUTATED 5 2 2 2 0
RB1 WILD-TYPE 111 179 155 81 111
'RB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S185.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
RB1 MUTATED 5 3 1
RB1 WILD-TYPE 141 126 117
'RB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S186.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
RB1 MUTATED 1 2 4 2 0
RB1 WILD-TYPE 58 107 86 102 31
'RB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0891 (Fisher's exact test), Q value = 1

Table S187.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
RB1 MUTATED 9 9 1
RB1 WILD-TYPE 483 264 207
'RB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0652 (Fisher's exact test), Q value = 1

Table S188.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
RB1 MUTATED 5 5 1 1 6 1
RB1 WILD-TYPE 195 147 270 129 162 51
'RB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 1

Table S189.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
RB1 MUTATED 8 0 8
RB1 WILD-TYPE 289 205 447

Figure S82.  Get High-res Image Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.019 (Fisher's exact test), Q value = 1

Table S190.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
RB1 MUTATED 3 8 2 1 0 2
RB1 WILD-TYPE 220 134 271 121 77 118

Figure S83.  Get High-res Image Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0935 (Fisher's exact test), Q value = 1

Table S191.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
RB1 MUTATED 2 6 0 3 1
RB1 WILD-TYPE 176 114 66 89 111
'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S192.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
RB1 MUTATED 8 1 3
RB1 WILD-TYPE 271 180 105
'NF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S193.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
NF1 MUTATED 1 0 2 3 4 2 0 3
NF1 WILD-TYPE 20 38 112 94 104 71 19 36
'NF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S194.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
NF1 MUTATED 2 4 3 3 3
NF1 WILD-TYPE 94 148 113 86 53
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S195.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
NF1 MUTATED 3 13 3 7 0
NF1 WILD-TYPE 232 353 79 231 41
'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S196.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
NF1 MUTATED 3 2 7 1 6
NF1 WILD-TYPE 113 179 150 82 105
'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S197.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
NF1 MUTATED 4 5 4
NF1 WILD-TYPE 142 124 114
'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S198.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
NF1 MUTATED 0 6 2 5 0
NF1 WILD-TYPE 59 103 88 99 31
'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S199.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
NF1 MUTATED 12 10 5
NF1 WILD-TYPE 480 263 203
'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S200.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
NF1 MUTATED 2 7 9 2 6 1
NF1 WILD-TYPE 198 145 262 128 162 51
'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S201.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
NF1 MUTATED 6 4 16
NF1 WILD-TYPE 291 201 439
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S202.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
NF1 MUTATED 8 5 5 2 3 3
NF1 WILD-TYPE 215 137 268 120 74 117
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S203.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
NF1 MUTATED 4 4 1 3 3
NF1 WILD-TYPE 174 116 65 89 109
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S204.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
NF1 MUTATED 9 5 1
NF1 WILD-TYPE 270 176 107
'ACTL6B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S205.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ACTL6B MUTATED 1 0 1 2 0 2 0 0
ACTL6B WILD-TYPE 20 38 113 95 108 71 19 39
'ACTL6B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S206.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ACTL6B MUTATED 1 0 2 2 1
ACTL6B WILD-TYPE 95 152 114 87 55
'ACTL6B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0448 (Fisher's exact test), Q value = 1

Table S207.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ACTL6B MUTATED 1 2 0 5 2
ACTL6B WILD-TYPE 234 364 82 233 39

Figure S84.  Get High-res Image Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ACTL6B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S208.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ACTL6B MUTATED 3 3 1 0 0
ACTL6B WILD-TYPE 113 178 156 83 111
'ACTL6B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S209.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ACTL6B MUTATED 2 1 2
ACTL6B WILD-TYPE 144 128 116
'ACTL6B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S210.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ACTL6B MUTATED 0 3 2 0 0
ACTL6B WILD-TYPE 59 106 88 104 31
'ACTL6B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S211.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ACTL6B MUTATED 6 3 1
ACTL6B WILD-TYPE 486 270 207
'ACTL6B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S212.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ACTL6B MUTATED 3 3 1 0 3 0
ACTL6B WILD-TYPE 197 149 270 130 165 52
'ACTL6B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S213.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ACTL6B MUTATED 3 2 5
ACTL6B WILD-TYPE 294 203 450
'ACTL6B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S214.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ACTL6B MUTATED 2 1 1 2 2 2
ACTL6B WILD-TYPE 221 141 272 120 75 118
'ACTL6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S215.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ACTL6B MUTATED 3 0 0 0 2
ACTL6B WILD-TYPE 175 120 66 92 110
'ACTL6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S216.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ACTL6B MUTATED 3 2 0
ACTL6B WILD-TYPE 276 179 108
'SPEN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S217.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SPEN MUTATED 0 1 4 2 8 3 1 1
SPEN WILD-TYPE 21 37 110 95 100 70 18 38
'SPEN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S218.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SPEN MUTATED 4 8 5 2 1
SPEN WILD-TYPE 92 144 111 87 55
'SPEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S219.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
SPEN MUTATED 6 16 2 5 1
SPEN WILD-TYPE 229 350 80 233 40
'SPEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S220.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
SPEN MUTATED 1 6 9 3 5
SPEN WILD-TYPE 115 175 148 80 106
'SPEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S221.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
SPEN MUTATED 6 4 4
SPEN WILD-TYPE 140 125 114
'SPEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S222.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
SPEN MUTATED 1 5 2 3 3
SPEN WILD-TYPE 58 104 88 101 28
'SPEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S223.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
SPEN MUTATED 19 5 8
SPEN WILD-TYPE 473 268 200
'SPEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S224.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
SPEN MUTATED 5 7 11 5 2 2
SPEN WILD-TYPE 195 145 260 125 166 50
'SPEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 1

Table S225.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
SPEN MUTATED 5 4 23
SPEN WILD-TYPE 292 201 432

Figure S85.  Get High-res Image Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SPEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00296 (Fisher's exact test), Q value = 1

Table S226.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
SPEN MUTATED 16 0 8 5 1 2
SPEN WILD-TYPE 207 142 265 117 76 118

Figure S86.  Get High-res Image Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SPEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0941 (Fisher's exact test), Q value = 1

Table S227.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
SPEN MUTATED 5 1 4 0 3
SPEN WILD-TYPE 173 119 62 92 109
'SPEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S228.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
SPEN MUTATED 7 5 1
SPEN WILD-TYPE 272 176 107
'CDKN1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S229.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CDKN1B MUTATED 0 0 1 0 3 1 0 1
CDKN1B WILD-TYPE 21 38 113 97 105 72 19 38
'CDKN1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S230.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CDKN1B MUTATED 1 3 1 0 1
CDKN1B WILD-TYPE 95 149 115 89 55
'CDKN1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S231.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
CDKN1B MUTATED 1 5 3 1 0
CDKN1B WILD-TYPE 234 361 79 237 41
'CDKN1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S232.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CDKN1B MUTATED 0 3 0 1 1
CDKN1B WILD-TYPE 116 178 157 82 110
'CDKN1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S233.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CDKN1B MUTATED 1 2 2
CDKN1B WILD-TYPE 145 127 116
'CDKN1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S234.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CDKN1B MUTATED 2 2 0 1 0
CDKN1B WILD-TYPE 57 107 90 103 31
'CDKN1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 1

Table S235.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
CDKN1B MUTATED 7 0 3
CDKN1B WILD-TYPE 485 273 205
'CDKN1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0586 (Fisher's exact test), Q value = 1

Table S236.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
CDKN1B MUTATED 0 2 4 4 0 0
CDKN1B WILD-TYPE 200 150 267 126 168 52
'CDKN1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0467 (Fisher's exact test), Q value = 1

Table S237.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
CDKN1B MUTATED 0 4 6
CDKN1B WILD-TYPE 297 201 449

Figure S87.  Get High-res Image Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CDKN1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S238.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
CDKN1B MUTATED 2 0 4 4 0 0
CDKN1B WILD-TYPE 221 142 269 118 77 120
'CDKN1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S239.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
CDKN1B MUTATED 1 0 1 2 1
CDKN1B WILD-TYPE 177 120 65 90 111
'CDKN1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 1

Table S240.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
CDKN1B MUTATED 0 2 3
CDKN1B WILD-TYPE 279 179 105

Figure S88.  Get High-res Image Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NCOR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S241.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
NCOR1 MUTATED 0 2 4 3 7 3 0 0
NCOR1 WILD-TYPE 21 36 110 94 101 70 19 39
'NCOR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S242.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
NCOR1 MUTATED 3 6 4 3 3
NCOR1 WILD-TYPE 93 146 112 86 53
'NCOR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S243.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
NCOR1 MUTATED 12 16 2 8 1
NCOR1 WILD-TYPE 223 350 80 230 40
'NCOR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S244.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
NCOR1 MUTATED 4 7 9 6 4
NCOR1 WILD-TYPE 112 174 148 77 107
'NCOR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S245.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
NCOR1 MUTATED 5 2 5
NCOR1 WILD-TYPE 141 127 113
'NCOR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S246.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
NCOR1 MUTATED 1 5 2 2 2
NCOR1 WILD-TYPE 58 104 88 102 29
'NCOR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S247.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
NCOR1 MUTATED 24 10 7
NCOR1 WILD-TYPE 468 263 201
'NCOR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S248.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
NCOR1 MUTATED 6 11 12 4 6 2
NCOR1 WILD-TYPE 194 141 259 126 162 50
'NCOR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S249.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
NCOR1 MUTATED 13 9 19
NCOR1 WILD-TYPE 284 196 436
'NCOR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S250.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
NCOR1 MUTATED 16 5 11 5 0 4
NCOR1 WILD-TYPE 207 137 262 117 77 116
'NCOR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S251.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
NCOR1 MUTATED 7 4 3 1 4
NCOR1 WILD-TYPE 171 116 63 91 108
'NCOR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S252.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
NCOR1 MUTATED 8 7 4
NCOR1 WILD-TYPE 271 174 104
'SF3B1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S253.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SF3B1 MUTATED 0 0 1 1 3 2 0 1
SF3B1 WILD-TYPE 21 38 113 96 105 71 19 38
'SF3B1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S254.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SF3B1 MUTATED 1 4 2 1 0
SF3B1 WILD-TYPE 95 148 114 88 56
'SF3B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S255.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
SF3B1 MUTATED 7 6 1 2 0
SF3B1 WILD-TYPE 228 360 81 236 41
'SF3B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0474 (Fisher's exact test), Q value = 1

Table S256.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
SF3B1 MUTATED 0 7 5 2 0
SF3B1 WILD-TYPE 116 174 152 81 111

Figure S89.  Get High-res Image Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SF3B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S257.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
SF3B1 MUTATED 1 1 3
SF3B1 WILD-TYPE 145 128 115
'SF3B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S258.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
SF3B1 MUTATED 0 4 1 0 0
SF3B1 WILD-TYPE 59 105 89 104 31
'SF3B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S259.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
SF3B1 MUTATED 11 2 3
SF3B1 WILD-TYPE 481 271 205
'SF3B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S260.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
SF3B1 MUTATED 5 4 6 0 1 0
SF3B1 WILD-TYPE 195 148 265 130 167 52
'SF3B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0683 (Fisher's exact test), Q value = 1

Table S261.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
SF3B1 MUTATED 1 4 11
SF3B1 WILD-TYPE 296 201 444
'SF3B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S262.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
SF3B1 MUTATED 2 2 7 1 3 1
SF3B1 WILD-TYPE 221 140 266 121 74 119
'SF3B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S263.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
SF3B1 MUTATED 1 0 1 2 2
SF3B1 WILD-TYPE 177 120 65 90 110
'SF3B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S264.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
SF3B1 MUTATED 1 3 2
SF3B1 WILD-TYPE 278 178 106
'ZFP36L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S265.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ZFP36L1 MUTATED 1 0 1 0 1 1 0 1
ZFP36L1 WILD-TYPE 20 38 113 97 107 72 19 38
'ZFP36L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S266.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ZFP36L1 MUTATED 1 2 2 0 0
ZFP36L1 WILD-TYPE 95 150 114 89 56
'ZFP36L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00543 (Fisher's exact test), Q value = 1

Table S267.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ZFP36L1 MUTATED 4 1 3 0 1
ZFP36L1 WILD-TYPE 231 365 79 238 40

Figure S90.  Get High-res Image Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZFP36L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 1

Table S268.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ZFP36L1 MUTATED 1 0 4 0 0
ZFP36L1 WILD-TYPE 115 181 153 83 111
'ZFP36L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 1

Table S269.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ZFP36L1 MUTATED 0 0 3
ZFP36L1 WILD-TYPE 146 129 115

Figure S91.  Get High-res Image Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZFP36L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S270.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ZFP36L1 MUTATED 0 3 0 0 0
ZFP36L1 WILD-TYPE 59 106 90 104 31
'ZFP36L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S271.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ZFP36L1 MUTATED 7 2 0
ZFP36L1 WILD-TYPE 485 271 208
'ZFP36L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S272.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ZFP36L1 MUTATED 4 2 1 0 1 1
ZFP36L1 WILD-TYPE 196 150 270 130 167 51
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S273.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ZFP36L1 MUTATED 2 2 5
ZFP36L1 WILD-TYPE 295 203 450
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.992 (Fisher's exact test), Q value = 1

Table S274.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ZFP36L1 MUTATED 3 1 3 1 0 1
ZFP36L1 WILD-TYPE 220 141 270 121 77 119
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S275.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ZFP36L1 MUTATED 2 1 1 0 1
ZFP36L1 WILD-TYPE 176 119 65 92 111
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S276.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ZFP36L1 MUTATED 3 2 0
ZFP36L1 WILD-TYPE 276 179 108
'KRAS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S277.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
KRAS MUTATED 0 0 0 1 2 0 0 1
KRAS WILD-TYPE 21 38 114 96 106 73 19 38
'KRAS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S278.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
KRAS MUTATED 0 2 1 0 1
KRAS WILD-TYPE 96 150 115 89 55
'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S279.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
KRAS MUTATED 0 5 0 1 0
KRAS WILD-TYPE 235 361 82 237 41
'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S280.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
KRAS MUTATED 0 2 0 0 2
KRAS WILD-TYPE 116 179 157 83 109
'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S281.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
KRAS MUTATED 0 1 2
KRAS WILD-TYPE 146 128 116
'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S282.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
KRAS MUTATED 1 1 1 0 0
KRAS WILD-TYPE 58 108 89 104 31
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S283.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
KRAS MUTATED 3 1 2
KRAS WILD-TYPE 489 272 206
'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S284.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
KRAS MUTATED 2 0 3 0 0 1
KRAS WILD-TYPE 198 152 268 130 168 51
'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S285.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
KRAS MUTATED 1 1 4
KRAS WILD-TYPE 296 204 451
'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S286.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
KRAS MUTATED 3 1 2 0 0 0
KRAS WILD-TYPE 220 141 271 122 77 120
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S287.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
KRAS MUTATED 1 1 0 1 0
KRAS WILD-TYPE 177 119 66 91 112
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S288.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
KRAS MUTATED 1 0 2
KRAS WILD-TYPE 278 181 106
'TCP11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S289.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TCP11 MUTATED 0 1 2 1 1 0 0 1
TCP11 WILD-TYPE 21 37 112 96 107 73 19 38
'TCP11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S290.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TCP11 MUTATED 2 3 0 1 0
TCP11 WILD-TYPE 94 149 116 88 56
'TCP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S291.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
TCP11 MUTATED 1 3 0 1 1
TCP11 WILD-TYPE 234 363 82 237 40
'TCP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S292.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TCP11 MUTATED 2 1 2
TCP11 WILD-TYPE 144 128 116
'TCP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S293.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TCP11 MUTATED 0 2 1 2 0
TCP11 WILD-TYPE 59 107 89 102 31
'TCP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S294.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
TCP11 MUTATED 3 1 2
TCP11 WILD-TYPE 489 272 206
'TCP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S295.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
TCP11 MUTATED 0 1 3 1 1 0
TCP11 WILD-TYPE 200 151 268 129 167 52
'TCP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S296.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
TCP11 MUTATED 1 2 3
TCP11 WILD-TYPE 296 203 452
'TCP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S297.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
TCP11 MUTATED 2 0 2 0 1 1
TCP11 WILD-TYPE 221 142 271 122 76 119
'AQP12A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S298.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
AQP12A MUTATED 0 1 1 0 1 0 0 0
AQP12A WILD-TYPE 21 37 113 97 107 73 19 39
'AQP12A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S299.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
AQP12A MUTATED 1 2 0 0 0
AQP12A WILD-TYPE 95 150 116 89 56
'AQP12A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S300.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
AQP12A MUTATED 4 1 0 1 0
AQP12A WILD-TYPE 231 365 82 237 41
'AQP12A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S301.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
AQP12A MUTATED 1 0 3 0 0
AQP12A WILD-TYPE 115 181 154 83 111
'AQP12A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S302.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
AQP12A MUTATED 0 1 2
AQP12A WILD-TYPE 146 128 116
'AQP12A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S303.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
AQP12A MUTATED 0 0 0 3 0
AQP12A WILD-TYPE 59 109 90 101 31
'AQP12A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S304.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
AQP12A MUTATED 4 1 1
AQP12A WILD-TYPE 488 272 207
'AQP12A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S305.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
AQP12A MUTATED 2 1 1 1 1 0
AQP12A WILD-TYPE 198 151 270 129 167 52
'AQP12A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S306.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
AQP12A MUTATED 1 2 3
AQP12A WILD-TYPE 296 203 452
'AQP12A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S307.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
AQP12A MUTATED 1 0 2 1 1 1
AQP12A WILD-TYPE 222 142 271 121 76 119
'AQP12A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S308.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
AQP12A MUTATED 2 0 1 0 0
AQP12A WILD-TYPE 176 120 65 92 112
'AQP12A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S309.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
AQP12A MUTATED 2 1 0
AQP12A WILD-TYPE 277 180 108
'DLG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S310.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
DLG1 MUTATED 0 2 1 0 2 2 0 0
DLG1 WILD-TYPE 21 36 113 97 106 71 19 39
'DLG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S311.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
DLG1 MUTATED 0 4 2 0 1
DLG1 WILD-TYPE 96 148 114 89 55
'DLG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S312.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
DLG1 MUTATED 2 6 1 4 0
DLG1 WILD-TYPE 233 360 81 234 41
'DLG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S313.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
DLG1 MUTATED 3 1 1 0 4
DLG1 WILD-TYPE 113 180 156 83 107
'DLG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S314.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
DLG1 MUTATED 2 3 2
DLG1 WILD-TYPE 144 126 116
'DLG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0952 (Fisher's exact test), Q value = 1

Table S315.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
DLG1 MUTATED 2 2 0 1 2
DLG1 WILD-TYPE 57 107 90 103 29
'DLG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0686 (Fisher's exact test), Q value = 1

Table S316.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
DLG1 MUTATED 3 7 3
DLG1 WILD-TYPE 489 266 205
'DLG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S317.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
DLG1 MUTATED 1 3 4 2 1 2
DLG1 WILD-TYPE 199 149 267 128 167 50
'DLG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S318.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
DLG1 MUTATED 6 2 4
DLG1 WILD-TYPE 291 203 451
'DLG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 1

Table S319.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
DLG1 MUTATED 5 5 1 0 1 0
DLG1 WILD-TYPE 218 137 272 122 76 120

Figure S92.  Get High-res Image Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DLG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S320.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
DLG1 MUTATED 1 3 1 1 2
DLG1 WILD-TYPE 177 117 65 91 110
'DLG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S321.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
DLG1 MUTATED 4 2 2
DLG1 WILD-TYPE 275 179 106
'MYB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S322.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MYB MUTATED 0 0 2 2 4 0 0 1
MYB WILD-TYPE 21 38 112 95 104 73 19 38
'MYB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0292 (Fisher's exact test), Q value = 1

Table S323.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MYB MUTATED 0 2 1 2 4
MYB WILD-TYPE 96 150 115 87 52

Figure S93.  Get High-res Image Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MYB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S324.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
MYB MUTATED 1 6 3 2 0
MYB WILD-TYPE 234 360 79 236 41
'MYB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S325.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MYB MUTATED 2 1 1 1 0
MYB WILD-TYPE 114 180 156 82 111
'MYB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S326.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MYB MUTATED 2 2 1
MYB WILD-TYPE 144 127 117
'MYB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S327.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MYB MUTATED 2 1 1 1 0
MYB WILD-TYPE 57 108 89 103 31
'MYB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S328.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
MYB MUTATED 7 3 2
MYB WILD-TYPE 485 270 206
'MYB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S329.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
MYB MUTATED 1 1 2 5 3 0
MYB WILD-TYPE 199 151 269 125 165 52
'MYB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 1

Table S330.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
MYB MUTATED 2 0 10
MYB WILD-TYPE 295 205 445

Figure S94.  Get High-res Image Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MYB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S331.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
MYB MUTATED 1 3 2 3 2 1
MYB WILD-TYPE 222 139 271 119 75 119
'MYB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S332.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
MYB MUTATED 2 0 0 2 0
MYB WILD-TYPE 176 120 66 90 112
'MYB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00144 (Fisher's exact test), Q value = 1

Table S333.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
MYB MUTATED 0 0 4
MYB WILD-TYPE 279 181 104

Figure S95.  Get High-res Image Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RPGR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S334.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RPGR MUTATED 0 1 3 3 2 2 1 1
RPGR WILD-TYPE 21 37 111 94 106 71 18 38
'RPGR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S335.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RPGR MUTATED 3 5 2 3 0
RPGR WILD-TYPE 93 147 114 86 56
'RPGR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S336.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
RPGR MUTATED 6 6 2 3 0
RPGR WILD-TYPE 229 360 80 235 41
'RPGR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S337.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RPGR MUTATED 2 2 5 1 4
RPGR WILD-TYPE 114 179 152 82 107
'RPGR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S338.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
RPGR MUTATED 5 4 2
RPGR WILD-TYPE 141 125 116
'RPGR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S339.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
RPGR MUTATED 0 2 3 6 0
RPGR WILD-TYPE 59 107 87 98 31
'RPGR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S340.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
RPGR MUTATED 9 8 2
RPGR WILD-TYPE 483 265 206
'RPGR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S341.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
RPGR MUTATED 4 3 6 1 4 1
RPGR WILD-TYPE 196 149 265 129 164 51
'RPGR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S342.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
RPGR MUTATED 6 2 10
RPGR WILD-TYPE 291 203 445
'RPGR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S343.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
RPGR MUTATED 8 4 3 2 1 0
RPGR WILD-TYPE 215 138 270 120 76 120
'RPGR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S344.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
RPGR MUTATED 4 1 1 0 1
RPGR WILD-TYPE 174 119 65 92 111
'RPGR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S345.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
RPGR MUTATED 5 2 0
RPGR WILD-TYPE 274 179 108
'TBL1XR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S346.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TBL1XR1 MUTATED 1 0 1 0 5 1 0 0
TBL1XR1 WILD-TYPE 20 38 113 97 103 72 19 39
'TBL1XR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.08 (Fisher's exact test), Q value = 1

Table S347.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TBL1XR1 MUTATED 0 3 2 0 3
TBL1XR1 WILD-TYPE 96 149 114 89 53
'TBL1XR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 1

Table S348.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
TBL1XR1 MUTATED 1 6 3 0 0
TBL1XR1 WILD-TYPE 234 360 79 238 41

Figure S96.  Get High-res Image Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TBL1XR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S349.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TBL1XR1 MUTATED 0 1 1 0 1
TBL1XR1 WILD-TYPE 116 180 156 83 110
'TBL1XR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S350.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TBL1XR1 MUTATED 2 4 1
TBL1XR1 WILD-TYPE 144 125 117
'TBL1XR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S351.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TBL1XR1 MUTATED 3 2 0 1 1
TBL1XR1 WILD-TYPE 56 107 90 103 30
'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S352.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
TBL1XR1 MUTATED 6 1 3
TBL1XR1 WILD-TYPE 486 272 205
'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0575 (Fisher's exact test), Q value = 1

Table S353.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
TBL1XR1 MUTATED 1 1 3 5 0 0
TBL1XR1 WILD-TYPE 199 151 268 125 168 52
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S354.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
TBL1XR1 MUTATED 1 1 8
TBL1XR1 WILD-TYPE 296 204 447
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 1

Table S355.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
TBL1XR1 MUTATED 3 0 1 5 1 0
TBL1XR1 WILD-TYPE 220 142 272 117 76 120

Figure S97.  Get High-res Image Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S356.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
TBL1XR1 MUTATED 3 1 0 1 1
TBL1XR1 WILD-TYPE 175 119 66 91 111
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S357.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
TBL1XR1 MUTATED 2 1 3
TBL1XR1 WILD-TYPE 277 180 105
'KDM6A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S358.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
KDM6A MUTATED 0 1 1 2 3 0 0 1
KDM6A WILD-TYPE 21 37 113 95 105 73 19 38
'KDM6A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S359.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
KDM6A MUTATED 2 4 0 2 0
KDM6A WILD-TYPE 94 148 116 87 56
'KDM6A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S360.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
KDM6A MUTATED 4 5 3 3 1
KDM6A WILD-TYPE 231 361 79 235 40
'KDM6A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S361.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
KDM6A MUTATED 2 3 3 2 0
KDM6A WILD-TYPE 114 178 154 81 111
'KDM6A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S362.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
KDM6A MUTATED 4 2 1
KDM6A WILD-TYPE 142 127 117
'KDM6A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S363.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
KDM6A MUTATED 1 1 2 3 0
KDM6A WILD-TYPE 58 108 88 101 31
'KDM6A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S364.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
KDM6A MUTATED 6 6 4
KDM6A WILD-TYPE 486 267 204
'KDM6A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S365.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
KDM6A MUTATED 2 4 5 0 5 0
KDM6A WILD-TYPE 198 148 266 130 163 52
'KDM6A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 1

Table S366.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
KDM6A MUTATED 5 0 11
KDM6A WILD-TYPE 292 205 444
'KDM6A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S367.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
KDM6A MUTATED 3 2 5 2 0 4
KDM6A WILD-TYPE 220 140 268 120 77 116
'KDM6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S368.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
KDM6A MUTATED 4 3 0 2 1
KDM6A WILD-TYPE 174 117 66 90 111
'KDM6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S369.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
KDM6A MUTATED 6 1 3
KDM6A WILD-TYPE 273 180 105
'MYH9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S370.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MYH9 MUTATED 0 1 0 2 2 1 1 1
MYH9 WILD-TYPE 21 37 114 95 106 72 18 38
'MYH9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S371.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MYH9 MUTATED 0 4 3 1 0
MYH9 WILD-TYPE 96 148 113 88 56
'MYH9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S372.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
MYH9 MUTATED 3 11 0 2 0
MYH9 WILD-TYPE 232 355 82 236 41
'MYH9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S373.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MYH9 MUTATED 2 3 6 1 1
MYH9 WILD-TYPE 114 178 151 82 110
'MYH9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S374.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MYH9 MUTATED 4 2 2
MYH9 WILD-TYPE 142 127 116
'MYH9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0212 (Fisher's exact test), Q value = 1

Table S375.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MYH9 MUTATED 1 3 1 0 3
MYH9 WILD-TYPE 58 106 89 104 28

Figure S98.  Get High-res Image Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MYH9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S376.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
MYH9 MUTATED 7 7 4
MYH9 WILD-TYPE 485 266 204
'MYH9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S377.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
MYH9 MUTATED 1 3 6 3 3 2
MYH9 WILD-TYPE 199 149 265 127 165 50
'MYH9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S378.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
MYH9 MUTATED 4 6 8
MYH9 WILD-TYPE 293 199 447
'MYH9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S379.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
MYH9 MUTATED 2 3 8 3 0 2
MYH9 WILD-TYPE 221 139 265 119 77 118
'MYH9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S380.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
MYH9 MUTATED 3 3 2 0 3
MYH9 WILD-TYPE 175 117 64 92 109
'MYH9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S381.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
MYH9 MUTATED 6 5 0
MYH9 WILD-TYPE 273 176 108
'HLA-C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S382.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
HLA-C MUTATED 0 1 0 0 0 1 0 1
HLA-C WILD-TYPE 21 37 114 97 108 72 19 38
'HLA-C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S383.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
HLA-C MUTATED 0 2 1 0 0
HLA-C WILD-TYPE 96 150 115 89 56
'HLA-C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S384.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
HLA-C MUTATED 2 3 0 4 0
HLA-C WILD-TYPE 233 363 82 234 41
'HLA-C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S385.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
HLA-C MUTATED 4 2 1 0 1
HLA-C WILD-TYPE 112 179 156 83 110
'HLA-C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S386.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
HLA-C MUTATED 1 0 2
HLA-C WILD-TYPE 145 129 116
'HLA-C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S387.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
HLA-C MUTATED 0 1 0 2 0
HLA-C WILD-TYPE 59 108 90 102 31
'HLA-C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S388.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
HLA-C MUTATED 2 5 2
HLA-C WILD-TYPE 490 268 206
'HLA-C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S389.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
HLA-C MUTATED 0 1 2 2 4 0
HLA-C WILD-TYPE 200 151 269 128 164 52
'HLA-C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S390.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
HLA-C MUTATED 5 1 3
HLA-C WILD-TYPE 292 204 452
'HLA-C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 1

Table S391.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
HLA-C MUTATED 0 1 4 0 0 4
HLA-C WILD-TYPE 223 141 269 122 77 116

Figure S99.  Get High-res Image Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HLA-C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 1

Table S392.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
HLA-C MUTATED 0 4 0 0 1
HLA-C WILD-TYPE 178 116 66 92 111

Figure S100.  Get High-res Image Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'HLA-C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S393.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
HLA-C MUTATED 4 1 0
HLA-C WILD-TYPE 275 180 108
'RAB42 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S394.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RAB42 MUTATED 0 0 0 3 1 0 0 0
RAB42 WILD-TYPE 21 38 114 94 107 73 19 39
'RAB42 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0708 (Fisher's exact test), Q value = 1

Table S395.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RAB42 MUTATED 0 1 0 3 0
RAB42 WILD-TYPE 96 151 116 86 56
'RAB42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S396.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
RAB42 MUTATED 0 1 0 3 0
RAB42 WILD-TYPE 235 365 82 235 41
'RAB42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S397.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
RAB42 MUTATED 1 0 2
RAB42 WILD-TYPE 145 129 116
'RAB42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S398.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
RAB42 MUTATED 0 1 2 0 0
RAB42 WILD-TYPE 59 108 88 104 31
'RAB42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S399.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
RAB42 MUTATED 1 3 0
RAB42 WILD-TYPE 491 270 208
'RAB42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S400.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
RAB42 MUTATED 0 0 1 0 3 0
RAB42 WILD-TYPE 200 152 270 130 165 52
'RAB42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S401.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
RAB42 MUTATED 2 1 1
RAB42 WILD-TYPE 295 204 454
'RAB42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0379 (Fisher's exact test), Q value = 1

Table S402.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
RAB42 MUTATED 0 0 1 0 0 3
RAB42 WILD-TYPE 223 142 272 122 77 117

Figure S101.  Get High-res Image Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FGFR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S403.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
FGFR2 MUTATED 0 0 1 1 2 2 0 0
FGFR2 WILD-TYPE 21 38 113 96 106 71 19 39
'FGFR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S404.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
FGFR2 MUTATED 1 1 2 1 1
FGFR2 WILD-TYPE 95 151 114 88 55
'FGFR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S405.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
FGFR2 MUTATED 3 3 3 2 0
FGFR2 WILD-TYPE 232 363 79 236 41
'FGFR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S406.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
FGFR2 MUTATED 0 1 3 1 0
FGFR2 WILD-TYPE 116 180 154 82 111
'FGFR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S407.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
FGFR2 MUTATED 2 2 1
FGFR2 WILD-TYPE 144 127 117
'FGFR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S408.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
FGFR2 MUTATED 0 2 1 2 0
FGFR2 WILD-TYPE 59 107 89 102 31
'FGFR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S409.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
FGFR2 MUTATED 7 3 1
FGFR2 WILD-TYPE 485 270 207
'FGFR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S410.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
FGFR2 MUTATED 1 4 3 1 1 1
FGFR2 WILD-TYPE 199 148 268 129 167 51
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S411.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
FGFR2 MUTATED 6 1 4
FGFR2 WILD-TYPE 291 204 451
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S412.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
FGFR2 MUTATED 6 1 3 0 0 1
FGFR2 WILD-TYPE 217 141 270 122 77 119
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S413.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
FGFR2 MUTATED 2 0 1 0 1
FGFR2 WILD-TYPE 176 120 65 92 111
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S414.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
FGFR2 MUTATED 2 2 0
FGFR2 WILD-TYPE 277 179 108
'ERBB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S415.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ERBB2 MUTATED 1 1 2 1 3 3 0 1
ERBB2 WILD-TYPE 20 37 112 96 105 70 19 38
'ERBB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S416.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ERBB2 MUTATED 2 6 3 1 0
ERBB2 WILD-TYPE 94 146 113 88 56
'ERBB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S417.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ERBB2 MUTATED 3 11 4 2 0
ERBB2 WILD-TYPE 232 355 78 236 41
'ERBB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.059 (Fisher's exact test), Q value = 1

Table S418.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ERBB2 MUTATED 0 1 4 3 4
ERBB2 WILD-TYPE 116 180 153 80 107
'ERBB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S419.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ERBB2 MUTATED 2 2 4
ERBB2 WILD-TYPE 144 127 114
'ERBB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S420.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ERBB2 MUTATED 1 2 1 3 1
ERBB2 WILD-TYPE 58 107 89 101 30
'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S421.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ERBB2 MUTATED 9 4 8
ERBB2 WILD-TYPE 483 269 200
'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S422.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ERBB2 MUTATED 4 4 8 1 1 3
ERBB2 WILD-TYPE 196 148 263 129 167 49
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 1

Table S423.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ERBB2 MUTATED 2 6 12
ERBB2 WILD-TYPE 295 199 443
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S424.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ERBB2 MUTATED 2 3 10 4 1 0
ERBB2 WILD-TYPE 221 139 263 118 76 120
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S425.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ERBB2 MUTATED 1 1 1 3 3
ERBB2 WILD-TYPE 177 119 65 89 109
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S426.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ERBB2 MUTATED 3 4 2
ERBB2 WILD-TYPE 276 177 106
'CTCF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 1

Table S427.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CTCF MUTATED 1 0 2 1 8 0 0 1
CTCF WILD-TYPE 20 38 112 96 100 73 19 38
'CTCF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0438 (Fisher's exact test), Q value = 1

Table S428.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CTCF MUTATED 3 3 1 1 5
CTCF WILD-TYPE 93 149 115 88 51

Figure S102.  Get High-res Image Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 1

Table S429.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
CTCF MUTATED 2 12 1 1 1
CTCF WILD-TYPE 233 354 81 237 40
'CTCF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 1

Table S430.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CTCF MUTATED 0 8 1 1 1
CTCF WILD-TYPE 116 173 156 82 110

Figure S103.  Get High-res Image Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CTCF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0616 (Fisher's exact test), Q value = 1

Table S431.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CTCF MUTATED 1 7 3
CTCF WILD-TYPE 145 122 115
'CTCF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S432.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CTCF MUTATED 5 3 1 2 0
CTCF WILD-TYPE 54 106 89 102 31
'CTCF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0876 (Fisher's exact test), Q value = 1

Table S433.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
CTCF MUTATED 11 1 5
CTCF WILD-TYPE 481 272 203
'CTCF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S434.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
CTCF MUTATED 3 1 6 6 1 0
CTCF WILD-TYPE 197 151 265 124 167 52
'CTCF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S435.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
CTCF MUTATED 2 4 11
CTCF WILD-TYPE 295 201 444
'CTCF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00147 (Fisher's exact test), Q value = 1

Table S436.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
CTCF MUTATED 2 1 5 2 7 0
CTCF WILD-TYPE 221 141 268 120 70 120

Figure S104.  Get High-res Image Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S437.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
CTCF MUTATED 4 1 0 1 1
CTCF WILD-TYPE 174 119 66 91 111
'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S438.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
CTCF MUTATED 4 1 2
CTCF WILD-TYPE 275 180 106
'ZMYM3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S439.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ZMYM3 MUTATED 1 0 1 4 4 1 0 0
ZMYM3 WILD-TYPE 20 38 113 93 104 72 19 39
'ZMYM3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S440.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ZMYM3 MUTATED 1 4 1 4 1
ZMYM3 WILD-TYPE 95 148 115 85 55
'ZMYM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S441.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ZMYM3 MUTATED 2 7 1 4 0
ZMYM3 WILD-TYPE 233 359 81 234 41
'ZMYM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S442.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ZMYM3 MUTATED 3 1 1 0 1
ZMYM3 WILD-TYPE 113 180 156 83 110
'ZMYM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S443.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ZMYM3 MUTATED 5 2 0
ZMYM3 WILD-TYPE 141 127 118
'ZMYM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S444.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ZMYM3 MUTATED 1 0 3 2 1
ZMYM3 WILD-TYPE 58 109 87 102 30
'ZMYM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S445.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ZMYM3 MUTATED 8 5 1
ZMYM3 WILD-TYPE 484 268 207
'ZMYM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S446.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ZMYM3 MUTATED 2 3 2 3 4 0
ZMYM3 WILD-TYPE 198 149 269 127 164 52
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S447.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ZMYM3 MUTATED 6 2 6
ZMYM3 WILD-TYPE 291 203 449
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S448.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ZMYM3 MUTATED 6 2 2 1 1 2
ZMYM3 WILD-TYPE 217 140 271 121 76 118
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S449.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ZMYM3 MUTATED 2 0 2 0 1
ZMYM3 WILD-TYPE 176 120 64 92 111
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S450.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ZMYM3 MUTATED 2 2 1
ZMYM3 WILD-TYPE 277 179 107
'FRMPD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S451.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
FRMPD2 MUTATED 0 1 1 1 1 2 0 0
FRMPD2 WILD-TYPE 21 37 113 96 107 71 19 39
'FRMPD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S452.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
FRMPD2 MUTATED 1 2 2 1 0
FRMPD2 WILD-TYPE 95 150 114 88 56
'FRMPD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S453.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
FRMPD2 MUTATED 3 4 0 4 1
FRMPD2 WILD-TYPE 232 362 82 234 40
'FRMPD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0957 (Fisher's exact test), Q value = 1

Table S454.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
FRMPD2 MUTATED 4 0 3 1 1
FRMPD2 WILD-TYPE 112 181 154 82 110
'FRMPD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S455.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
FRMPD2 MUTATED 2 0 2
FRMPD2 WILD-TYPE 144 129 116
'FRMPD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S456.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
FRMPD2 MUTATED 0 1 1 2 0
FRMPD2 WILD-TYPE 59 108 89 102 31
'FRMPD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S457.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
FRMPD2 MUTATED 7 4 1
FRMPD2 WILD-TYPE 485 269 207
'FRMPD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0794 (Fisher's exact test), Q value = 1

Table S458.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
FRMPD2 MUTATED 0 4 4 0 4 0
FRMPD2 WILD-TYPE 200 148 267 130 164 52
'FRMPD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S459.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
FRMPD2 MUTATED 4 3 5
FRMPD2 WILD-TYPE 293 202 450
'FRMPD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S460.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
FRMPD2 MUTATED 4 1 3 1 0 3
FRMPD2 WILD-TYPE 219 141 270 121 77 117
'FRMPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S461.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
FRMPD2 MUTATED 0 2 0 2 2
FRMPD2 WILD-TYPE 178 118 66 90 110
'FRMPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S462.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
FRMPD2 MUTATED 2 3 1
FRMPD2 WILD-TYPE 277 178 107
'TFE3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S463.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TFE3 MUTATED 1 1 1 2 1 1 0 0
TFE3 WILD-TYPE 20 37 113 95 107 72 19 39
'TFE3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S464.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TFE3 MUTATED 1 2 2 2 0
TFE3 WILD-TYPE 95 150 114 87 56
'TFE3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S465.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
TFE3 MUTATED 2 2 0 3 0
TFE3 WILD-TYPE 233 364 82 235 41
'TFE3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S466.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TFE3 MUTATED 1 1 0 1 1
TFE3 WILD-TYPE 115 180 157 82 110
'TFE3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S467.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TFE3 MUTATED 1 1 1
TFE3 WILD-TYPE 145 128 117
'TFE3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S468.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TFE3 MUTATED 0 0 1 2 0
TFE3 WILD-TYPE 59 109 89 102 31
'TFE3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S469.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
TFE3 MUTATED 3 3 1
TFE3 WILD-TYPE 489 270 207
'TFE3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S470.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
TFE3 MUTATED 2 1 1 0 2 1
TFE3 WILD-TYPE 198 151 270 130 166 51
'TFE3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S471.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
TFE3 MUTATED 2 1 4
TFE3 WILD-TYPE 295 204 451
'TFE3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S472.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
TFE3 MUTATED 1 3 2 0 0 1
TFE3 WILD-TYPE 222 139 271 122 77 119
'TFE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S473.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
TFE3 MUTATED 2 1 0 0 0
TFE3 WILD-TYPE 176 119 66 92 112
'TFE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S474.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
TFE3 MUTATED 3 0 0
TFE3 WILD-TYPE 276 181 108
'GPS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 1

Table S475.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
GPS2 MUTATED 0 4 2 0 1 0 0 1
GPS2 WILD-TYPE 21 34 112 97 107 73 19 38

Figure S105.  Get High-res Image Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GPS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0488 (Fisher's exact test), Q value = 1

Table S476.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
GPS2 MUTATED 2 6 0 0 0
GPS2 WILD-TYPE 94 146 116 89 56

Figure S106.  Get High-res Image Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0677 (Fisher's exact test), Q value = 1

Table S477.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
GPS2 MUTATED 2 9 0 0 0
GPS2 WILD-TYPE 233 357 82 238 41
'GPS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S478.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
GPS2 MUTATED 2 1 4 1 0
GPS2 WILD-TYPE 114 180 153 82 111
'GPS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S479.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
GPS2 MUTATED 0 2 2
GPS2 WILD-TYPE 146 127 116
'GPS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S480.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
GPS2 MUTATED 1 1 0 2 0
GPS2 WILD-TYPE 58 108 90 102 31
'GPS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 1

Table S481.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
GPS2 MUTATED 3 2 6
GPS2 WILD-TYPE 489 271 202

Figure S107.  Get High-res Image Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GPS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0565 (Fisher's exact test), Q value = 1

Table S482.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
GPS2 MUTATED 2 0 6 1 0 2
GPS2 WILD-TYPE 198 152 265 129 168 50
'GPS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S483.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
GPS2 MUTATED 3 4 4
GPS2 WILD-TYPE 294 201 451
'GPS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S484.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
GPS2 MUTATED 1 4 3 3 0 0
GPS2 WILD-TYPE 222 138 270 119 77 120
'GPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S485.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
GPS2 MUTATED 1 0 1 1 2
GPS2 WILD-TYPE 177 120 65 91 110
'GPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S486.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
GPS2 MUTATED 2 3 0
GPS2 WILD-TYPE 277 178 108
'DOCK11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S487.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
DOCK11 MUTATED 0 0 3 4 1 3 0 0
DOCK11 WILD-TYPE 21 38 111 93 107 70 19 39
'DOCK11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S488.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
DOCK11 MUTATED 2 2 5 2 0
DOCK11 WILD-TYPE 94 150 111 87 56
'DOCK11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S489.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
DOCK11 MUTATED 2 8 1 9 0
DOCK11 WILD-TYPE 233 358 81 229 41
'DOCK11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S490.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
DOCK11 MUTATED 2 2 5 0 3
DOCK11 WILD-TYPE 114 179 152 83 108
'DOCK11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S491.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
DOCK11 MUTATED 5 2 1
DOCK11 WILD-TYPE 141 127 117
'DOCK11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0667 (Fisher's exact test), Q value = 1

Table S492.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
DOCK11 MUTATED 0 0 4 4 0
DOCK11 WILD-TYPE 59 109 86 100 31
'DOCK11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0891 (Fisher's exact test), Q value = 1

Table S493.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
DOCK11 MUTATED 8 10 2
DOCK11 WILD-TYPE 484 263 206
'DOCK11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 1

Table S494.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
DOCK11 MUTATED 2 7 3 1 4 3
DOCK11 WILD-TYPE 198 145 268 129 164 49

Figure S108.  Get High-res Image Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DOCK11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S495.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
DOCK11 MUTATED 10 2 8
DOCK11 WILD-TYPE 287 203 447
'DOCK11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 1

Table S496.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
DOCK11 MUTATED 8 7 3 1 0 1
DOCK11 WILD-TYPE 215 135 270 121 77 119

Figure S109.  Get High-res Image Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DOCK11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 1

Table S497.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
DOCK11 MUTATED 2 6 0 0 4
DOCK11 WILD-TYPE 176 114 66 92 108

Figure S110.  Get High-res Image Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DOCK11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S498.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
DOCK11 MUTATED 9 3 0
DOCK11 WILD-TYPE 270 178 108
'HRNR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.988 (Fisher's exact test), Q value = 1

Table S499.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
HRNR MUTATED 0 1 5 5 4 4 0 1
HRNR WILD-TYPE 21 37 109 92 104 69 19 38
'HRNR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S500.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
HRNR MUTATED 2 7 4 5 2
HRNR WILD-TYPE 94 145 112 84 54
'HRNR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S501.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
HRNR MUTATED 3 13 4 8 3
HRNR WILD-TYPE 232 353 78 230 38
'HRNR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S502.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
HRNR MUTATED 4 6 3 4 3
HRNR WILD-TYPE 112 175 154 79 108
'HRNR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S503.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
HRNR MUTATED 4 6 6
HRNR WILD-TYPE 142 123 112
'HRNR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S504.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
HRNR MUTATED 2 3 3 6 2
HRNR WILD-TYPE 57 106 87 98 29
'HRNR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S505.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
HRNR MUTATED 14 10 7
HRNR WILD-TYPE 478 263 201
'HRNR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S506.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
HRNR MUTATED 5 3 10 3 7 3
HRNR WILD-TYPE 195 149 261 127 161 49
'HRNR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S507.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
HRNR MUTATED 11 5 14
HRNR WILD-TYPE 286 200 441
'HRNR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S508.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
HRNR MUTATED 9 6 8 2 3 2
HRNR WILD-TYPE 214 136 265 120 74 118
'HRNR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S509.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
HRNR MUTATED 6 4 0 0 5
HRNR WILD-TYPE 172 116 66 92 107
'HRNR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S510.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
HRNR MUTATED 9 4 2
HRNR WILD-TYPE 270 177 106
'CASZ1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S511.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CASZ1 MUTATED 0 1 1 2 2 1 0 0
CASZ1 WILD-TYPE 21 37 113 95 106 72 19 39
'CASZ1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S512.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CASZ1 MUTATED 1 3 1 2 0
CASZ1 WILD-TYPE 95 149 115 87 56
'CASZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S513.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
CASZ1 MUTATED 4 4 1 4 0
CASZ1 WILD-TYPE 231 362 81 234 41
'CASZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S514.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CASZ1 MUTATED 3 2 4 0 1
CASZ1 WILD-TYPE 113 179 153 83 110
'CASZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S515.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CASZ1 MUTATED 1 0 3
CASZ1 WILD-TYPE 145 129 115
'CASZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S516.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CASZ1 MUTATED 0 2 1 1 0
CASZ1 WILD-TYPE 59 107 89 103 31
'CASZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S517.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
CASZ1 MUTATED 6 5 3
CASZ1 WILD-TYPE 486 268 205
'CASZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S518.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
CASZ1 MUTATED 2 2 4 2 4 0
CASZ1 WILD-TYPE 198 150 267 128 164 52
'CASZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S519.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
CASZ1 MUTATED 3 3 7
CASZ1 WILD-TYPE 294 202 448
'CASZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S520.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
CASZ1 MUTATED 3 2 4 1 0 3
CASZ1 WILD-TYPE 220 140 269 121 77 117
'CASZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S521.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
CASZ1 MUTATED 4 1 0 0 3
CASZ1 WILD-TYPE 174 119 66 92 109
'CASZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S522.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
CASZ1 MUTATED 6 2 0
CASZ1 WILD-TYPE 273 179 108
'CDC42EP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S523.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CDC42EP1 MUTATED 0 0 1 2 0 0 0 1
CDC42EP1 WILD-TYPE 21 38 113 95 108 73 19 38
'CDC42EP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S524.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CDC42EP1 MUTATED 1 1 0 2 0
CDC42EP1 WILD-TYPE 95 151 116 87 56
'CDC42EP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S525.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
CDC42EP1 MUTATED 0 2 1 2 0
CDC42EP1 WILD-TYPE 235 364 81 236 41
'CDC42EP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S526.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CDC42EP1 MUTATED 0 1 0 0 2
CDC42EP1 WILD-TYPE 116 180 157 83 109
'CDC42EP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S527.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CDC42EP1 MUTATED 2 1 1
CDC42EP1 WILD-TYPE 144 128 117
'CDC42EP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S528.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CDC42EP1 MUTATED 1 1 2 0 0
CDC42EP1 WILD-TYPE 58 108 88 104 31
'CDC42EP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S529.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
CDC42EP1 MUTATED 1 2 2
CDC42EP1 WILD-TYPE 491 271 206
'CDC42EP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S530.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
CDC42EP1 MUTATED 1 0 2 0 2 0
CDC42EP1 WILD-TYPE 199 152 269 130 166 52
'CDC42EP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S531.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
CDC42EP1 MUTATED 2 1 2
CDC42EP1 WILD-TYPE 295 204 453
'CDC42EP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S532.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
CDC42EP1 MUTATED 0 2 2 0 0 1
CDC42EP1 WILD-TYPE 223 140 271 122 77 119
'C1QTNF5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S533.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
C1QTNF5 MUTATED 0 0 2 0 0 1 0 0
C1QTNF5 WILD-TYPE 21 38 112 97 108 72 19 39
'C1QTNF5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S534.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
C1QTNF5 MUTATED 2 0 1 0 0
C1QTNF5 WILD-TYPE 94 152 115 89 56
'C1QTNF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S535.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
C1QTNF5 MUTATED 1 2 2 2 0
C1QTNF5 WILD-TYPE 234 364 80 236 41
'C1QTNF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S536.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
C1QTNF5 MUTATED 2 0 1
C1QTNF5 WILD-TYPE 144 129 117
'C1QTNF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S537.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
C1QTNF5 MUTATED 1 1 1 0 0
C1QTNF5 WILD-TYPE 58 108 89 104 31
'C1QTNF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S538.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
C1QTNF5 MUTATED 4 1 2
C1QTNF5 WILD-TYPE 488 272 206
'C1QTNF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S539.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
C1QTNF5 MUTATED 2 2 2 0 0 1
C1QTNF5 WILD-TYPE 198 150 269 130 168 51
'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S540.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
C1QTNF5 MUTATED 2 3 2
C1QTNF5 WILD-TYPE 295 202 453
'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S541.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
C1QTNF5 MUTATED 0 2 5 0 0 0
C1QTNF5 WILD-TYPE 223 140 268 122 77 120
'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 1

Table S542.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
C1QTNF5 MUTATED 0 0 2 2 0
C1QTNF5 WILD-TYPE 178 120 64 90 112

Figure S111.  Get High-res Image Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0792 (Fisher's exact test), Q value = 1

Table S543.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
C1QTNF5 MUTATED 0 3 1
C1QTNF5 WILD-TYPE 279 178 107
'TGS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S544.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TGS1 MUTATED 1 0 1 1 1 2 0 0
TGS1 WILD-TYPE 20 38 113 96 107 71 19 39
'TGS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S545.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TGS1 MUTATED 1 1 3 1 0
TGS1 WILD-TYPE 95 151 113 88 56
'TGS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S546.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
TGS1 MUTATED 2 7 0 2 1
TGS1 WILD-TYPE 233 359 82 236 40
'TGS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S547.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TGS1 MUTATED 0 4 4 0 3
TGS1 WILD-TYPE 116 177 153 83 108
'TGS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S548.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TGS1 MUTATED 1 0 3
TGS1 WILD-TYPE 145 129 115
'TGS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S549.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TGS1 MUTATED 0 1 1 1 1
TGS1 WILD-TYPE 59 108 89 103 30
'TGS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S550.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
TGS1 MUTATED 7 4 2
TGS1 WILD-TYPE 485 269 206
'TGS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0974 (Fisher's exact test), Q value = 1

Table S551.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
TGS1 MUTATED 0 5 4 2 1 1
TGS1 WILD-TYPE 200 147 267 128 167 51
'TGS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S552.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
TGS1 MUTATED 1 3 9
TGS1 WILD-TYPE 296 202 446
'TGS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S553.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
TGS1 MUTATED 5 0 6 2 0 0
TGS1 WILD-TYPE 218 142 267 120 77 120
'TGS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S554.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
TGS1 MUTATED 3 0 2 0 2
TGS1 WILD-TYPE 175 120 64 92 110
'TGS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S555.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
TGS1 MUTATED 2 4 1
TGS1 WILD-TYPE 277 177 107
'USP36 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S556.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
USP36 MUTATED 0 0 2 3 2 0 0 0
USP36 WILD-TYPE 21 38 112 94 106 73 19 39
'USP36 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S557.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
USP36 MUTATED 2 1 0 3 1
USP36 WILD-TYPE 94 151 116 86 55
'USP36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S558.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
USP36 MUTATED 2 3 1 2 0
USP36 WILD-TYPE 233 363 81 236 41
'USP36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S559.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
USP36 MUTATED 1 1 1 0 0
USP36 WILD-TYPE 115 180 156 83 111
'USP36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S560.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
USP36 MUTATED 3 3 1
USP36 WILD-TYPE 143 126 117
'USP36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S561.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
USP36 MUTATED 1 0 3 3 0
USP36 WILD-TYPE 58 109 87 101 31
'USP36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S562.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
USP36 MUTATED 5 3 0
USP36 WILD-TYPE 487 270 208
'USP36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0656 (Fisher's exact test), Q value = 1

Table S563.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
USP36 MUTATED 4 0 0 1 3 0
USP36 WILD-TYPE 196 152 271 129 165 52
'USP36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S564.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
USP36 MUTATED 3 1 4
USP36 WILD-TYPE 294 204 451
'USP36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S565.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
USP36 MUTATED 2 0 1 1 1 3
USP36 WILD-TYPE 221 142 272 121 76 117
'ASB10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S566.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ASB10 MUTATED 0 0 1 1 2 0 0 0
ASB10 WILD-TYPE 21 38 113 96 106 73 19 39
'ASB10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0638 (Fisher's exact test), Q value = 1

Table S567.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ASB10 MUTATED 1 0 1 0 2
ASB10 WILD-TYPE 95 152 115 89 54
'ASB10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S568.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ASB10 MUTATED 1 4 1 2 0
ASB10 WILD-TYPE 234 362 81 236 41
'ASB10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S569.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ASB10 MUTATED 2 4 1 1 0
ASB10 WILD-TYPE 114 177 156 82 111
'ASB10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S570.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ASB10 MUTATED 5 3 0
ASB10 WILD-TYPE 487 270 208
'ASB10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S571.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ASB10 MUTATED 2 3 1 1 1 0
ASB10 WILD-TYPE 198 149 270 129 167 52
'ASB10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S572.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ASB10 MUTATED 3 0 5
ASB10 WILD-TYPE 294 205 450
'ASB10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S573.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ASB10 MUTATED 5 1 1 0 1 0
ASB10 WILD-TYPE 218 141 272 122 76 120
'ASB10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S574.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ASB10 MUTATED 1 2 0 1 1
ASB10 WILD-TYPE 177 118 66 91 111
'ASB10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S575.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ASB10 MUTATED 3 1 1
ASB10 WILD-TYPE 276 180 107
'EIF4A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S576.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
EIF4A2 MUTATED 1 0 1 0 0 1 0 0
EIF4A2 WILD-TYPE 20 38 113 97 108 72 19 39
'EIF4A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S577.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
EIF4A2 MUTATED 1 1 1 0 0
EIF4A2 WILD-TYPE 95 151 115 89 56
'EIF4A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S578.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
EIF4A2 MUTATED 3 4 0 2 0
EIF4A2 WILD-TYPE 232 362 82 236 41
'EIF4A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S579.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
EIF4A2 MUTATED 2 0 3 0 1
EIF4A2 WILD-TYPE 114 181 154 83 110
'EIF4A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S580.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
EIF4A2 MUTATED 1 1 1
EIF4A2 WILD-TYPE 145 128 117
'EIF4A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S581.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
EIF4A2 MUTATED 1 0 0 1 1
EIF4A2 WILD-TYPE 58 109 90 103 30
'EIF4A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S582.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
EIF4A2 MUTATED 3 5 1
EIF4A2 WILD-TYPE 489 268 207
'EIF4A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0561 (Fisher's exact test), Q value = 1

Table S583.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
EIF4A2 MUTATED 2 1 2 0 1 3
EIF4A2 WILD-TYPE 198 151 269 130 167 49
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S584.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
EIF4A2 MUTATED 2 4 3
EIF4A2 WILD-TYPE 295 201 452
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S585.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
EIF4A2 MUTATED 4 2 1 1 0 1
EIF4A2 WILD-TYPE 219 140 272 121 77 119
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S586.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
EIF4A2 MUTATED 1 1 1 0 3
EIF4A2 WILD-TYPE 177 119 65 92 109
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S587.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
EIF4A2 MUTATED 2 4 0
EIF4A2 WILD-TYPE 277 177 108
'DNAH12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S588.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
DNAH12 MUTATED 0 0 2 2 2 1 0 1
DNAH12 WILD-TYPE 21 38 112 95 106 72 19 38
'DNAH12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S589.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
DNAH12 MUTATED 1 4 1 2 0
DNAH12 WILD-TYPE 95 148 115 87 56
'DNAH12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S590.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
DNAH12 MUTATED 5 9 1 2 0
DNAH12 WILD-TYPE 230 357 81 236 41
'DNAH12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S591.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
DNAH12 MUTATED 1 6 3 0 3
DNAH12 WILD-TYPE 115 175 154 83 108
'DNAH12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S592.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
DNAH12 MUTATED 1 1 3
DNAH12 WILD-TYPE 145 128 115
'DNAH12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S593.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
DNAH12 MUTATED 1 1 2 1 0
DNAH12 WILD-TYPE 58 108 88 103 31
'DNAH12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S594.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
DNAH12 MUTATED 9 5 4
DNAH12 WILD-TYPE 483 268 204
'DNAH12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S595.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
DNAH12 MUTATED 3 2 5 3 4 1
DNAH12 WILD-TYPE 197 150 266 127 164 51
'DNAH12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S596.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
DNAH12 MUTATED 6 4 8
DNAH12 WILD-TYPE 291 201 447
'DNAH12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S597.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
DNAH12 MUTATED 4 4 7 1 1 1
DNAH12 WILD-TYPE 219 138 266 121 76 119
'DNAH12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S598.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
DNAH12 MUTATED 3 2 0 0 5
DNAH12 WILD-TYPE 175 118 66 92 107
'DNAH12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S599.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
DNAH12 MUTATED 5 5 0
DNAH12 WILD-TYPE 274 176 108
'RHBG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S600.  Gene #52: 'RHBG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
RHBG MUTATED 2 1 0 1 0
RHBG WILD-TYPE 233 365 82 237 41
'RHBG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00777 (Fisher's exact test), Q value = 1

Table S601.  Gene #52: 'RHBG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
RHBG MUTATED 0 4 0
RHBG WILD-TYPE 492 269 208

Figure S112.  Get High-res Image Gene #52: 'RHBG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RHBG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.098 (Fisher's exact test), Q value = 1

Table S602.  Gene #52: 'RHBG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
RHBG MUTATED 0 2 0 0 2 0
RHBG WILD-TYPE 200 150 271 130 166 52
'RHBG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S603.  Gene #52: 'RHBG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
RHBG MUTATED 2 0 2
RHBG WILD-TYPE 295 205 453
'RHBG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S604.  Gene #52: 'RHBG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
RHBG MUTATED 2 0 0 0 0 2
RHBG WILD-TYPE 221 142 273 122 77 118
'PAX2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S605.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PAX2 MUTATED 0 0 1 0 1 1 0 0
PAX2 WILD-TYPE 21 38 113 97 107 72 19 39
'PAX2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S606.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PAX2 MUTATED 1 0 1 0 1
PAX2 WILD-TYPE 95 152 115 89 55
'PAX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S607.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
PAX2 MUTATED 0 1 0 3 0
PAX2 WILD-TYPE 235 365 82 235 41
'PAX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S608.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PAX2 MUTATED 0 2 1
PAX2 WILD-TYPE 146 127 117
'PAX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S609.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PAX2 MUTATED 1 2 0 0 0
PAX2 WILD-TYPE 58 107 90 104 31
'PAX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S610.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
PAX2 MUTATED 4 0 0
PAX2 WILD-TYPE 488 273 208
'PAX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S611.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
PAX2 MUTATED 2 2 0 0 0 0
PAX2 WILD-TYPE 198 150 271 130 168 52
'PAX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S612.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
PAX2 MUTATED 1 0 3
PAX2 WILD-TYPE 296 205 452
'PAX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0488 (Fisher's exact test), Q value = 1

Table S613.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
PAX2 MUTATED 0 1 0 2 1 0
PAX2 WILD-TYPE 223 141 273 120 76 120

Figure S113.  Get High-res Image Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FXYD5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S614.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
FXYD5 MUTATED 0 1 1 1 0 0 0 0
FXYD5 WILD-TYPE 21 37 113 96 108 73 19 39
'FXYD5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S615.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
FXYD5 MUTATED 1 1 0 1 0
FXYD5 WILD-TYPE 95 151 116 88 56
'FXYD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S616.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
FXYD5 MUTATED 0 3 0 1 1
FXYD5 WILD-TYPE 235 363 82 237 40
'FXYD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S617.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
FXYD5 MUTATED 2 0 1
FXYD5 WILD-TYPE 144 129 117
'FXYD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S618.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
FXYD5 MUTATED 0 1 1 1 0
FXYD5 WILD-TYPE 59 108 89 103 31
'FXYD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S619.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
FXYD5 MUTATED 1 1 3
FXYD5 WILD-TYPE 491 272 205
'FXYD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S620.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
FXYD5 MUTATED 0 1 3 0 1 0
FXYD5 WILD-TYPE 200 151 268 130 167 52
'FXYD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S621.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
FXYD5 MUTATED 1 3 1
FXYD5 WILD-TYPE 296 202 454
'FXYD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S622.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
FXYD5 MUTATED 1 1 3 0 0 0
FXYD5 WILD-TYPE 222 141 270 122 77 120
'BCORL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S623.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
BCORL1 MUTATED 0 3 2 2 0 1 0 0
BCORL1 WILD-TYPE 21 35 112 95 108 72 19 39
'BCORL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S624.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
BCORL1 MUTATED 2 3 1 2 0
BCORL1 WILD-TYPE 94 149 115 87 56
'BCORL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S625.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
BCORL1 MUTATED 6 5 0 4 0
BCORL1 WILD-TYPE 229 361 82 234 41
'BCORL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S626.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
BCORL1 MUTATED 4 1 3 1 0
BCORL1 WILD-TYPE 112 180 154 82 111
'BCORL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S627.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
BCORL1 MUTATED 3 3 0
BCORL1 WILD-TYPE 143 126 118
'BCORL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00791 (Fisher's exact test), Q value = 1

Table S628.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
BCORL1 MUTATED 0 0 1 2 3
BCORL1 WILD-TYPE 59 109 89 102 28

Figure S114.  Get High-res Image Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0965 (Fisher's exact test), Q value = 1

Table S629.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
BCORL1 MUTATED 6 8 1
BCORL1 WILD-TYPE 486 265 207
'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S630.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
BCORL1 MUTATED 3 3 4 0 4 1
BCORL1 WILD-TYPE 197 149 267 130 164 51
'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S631.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
BCORL1 MUTATED 6 1 8
BCORL1 WILD-TYPE 291 204 447
'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S632.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
BCORL1 MUTATED 4 2 4 1 1 3
BCORL1 WILD-TYPE 219 140 269 121 76 117
'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S633.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
BCORL1 MUTATED 4 3 0 2 2
BCORL1 WILD-TYPE 174 117 66 90 110
'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S634.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
BCORL1 MUTATED 7 2 2
BCORL1 WILD-TYPE 272 179 106
'ZNF362 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S635.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ZNF362 MUTATED 0 0 2 0 2 1 0 0
ZNF362 WILD-TYPE 21 38 112 97 106 72 19 39
'ZNF362 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S636.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ZNF362 MUTATED 1 2 1 0 1
ZNF362 WILD-TYPE 95 150 115 89 55
'ZNF362 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S637.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ZNF362 MUTATED 0 1 1 1 1
ZNF362 WILD-TYPE 235 365 81 237 40
'ZNF362 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S638.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ZNF362 MUTATED 0 3 1
ZNF362 WILD-TYPE 146 126 117
'ZNF362 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S639.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ZNF362 MUTATED 1 1 0 2 0
ZNF362 WILD-TYPE 58 108 90 102 31
'ZNF362 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S640.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ZNF362 MUTATED 4 0 1
ZNF362 WILD-TYPE 488 273 207
'ZNF362 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S641.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ZNF362 MUTATED 3 1 1 0 0 0
ZNF362 WILD-TYPE 197 151 270 130 168 52
'ZNF362 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S642.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ZNF362 MUTATED 0 1 4
ZNF362 WILD-TYPE 297 204 451
'ZNF362 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S643.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ZNF362 MUTATED 1 0 2 1 1 0
ZNF362 WILD-TYPE 222 142 271 121 76 120
'PTHLH MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S644.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PTHLH MUTATED 0 1 0 0 1 2 0 1
PTHLH WILD-TYPE 21 37 114 97 107 71 19 38
'PTHLH MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S645.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PTHLH MUTATED 1 2 2 0 0
PTHLH WILD-TYPE 95 150 114 89 56
'PTHLH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0452 (Fisher's exact test), Q value = 1

Table S646.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
PTHLH MUTATED 2 1 1 1 2
PTHLH WILD-TYPE 233 365 81 237 39

Figure S115.  Get High-res Image Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTHLH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S647.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PTHLH MUTATED 1 0 3 1 0
PTHLH WILD-TYPE 115 181 154 82 111
'PTHLH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S648.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PTHLH MUTATED 1 1 2
PTHLH WILD-TYPE 145 128 116
'PTHLH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S649.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PTHLH MUTATED 0 2 0 2 0
PTHLH WILD-TYPE 59 107 90 102 31
'PTHLH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S650.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
PTHLH MUTATED 6 0 1
PTHLH WILD-TYPE 486 273 207
'PTHLH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S651.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
PTHLH MUTATED 4 1 2 0 0 0
PTHLH WILD-TYPE 196 151 269 130 168 52
'PTHLH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S652.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
PTHLH MUTATED 1 0 5
PTHLH WILD-TYPE 296 205 450
'PTHLH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S653.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
PTHLH MUTATED 2 0 3 1 0 0
PTHLH WILD-TYPE 221 142 270 121 77 120
'GPRIN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S654.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
GPRIN2 MUTATED 0 1 0 2 3 1 0 0
GPRIN2 WILD-TYPE 21 37 114 95 105 72 19 39
'GPRIN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S655.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
GPRIN2 MUTATED 0 3 1 2 1
GPRIN2 WILD-TYPE 96 149 115 87 55
'GPRIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S656.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
GPRIN2 MUTATED 4 4 0 3 0
GPRIN2 WILD-TYPE 231 362 82 235 41
'GPRIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S657.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
GPRIN2 MUTATED 2 3 2 0 0
GPRIN2 WILD-TYPE 114 178 155 83 111
'GPRIN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S658.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
GPRIN2 MUTATED 3 2 1
GPRIN2 WILD-TYPE 143 127 117
'GPRIN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.041 (Fisher's exact test), Q value = 1

Table S659.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
GPRIN2 MUTATED 2 0 1 1 2
GPRIN2 WILD-TYPE 57 109 89 103 29

Figure S116.  Get High-res Image Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'GPRIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S660.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
GPRIN2 MUTATED 4 5 2
GPRIN2 WILD-TYPE 488 268 206
'GPRIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S661.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
GPRIN2 MUTATED 1 2 3 1 4 0
GPRIN2 WILD-TYPE 199 150 268 129 164 52
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S662.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
GPRIN2 MUTATED 4 2 4
GPRIN2 WILD-TYPE 293 203 451
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S663.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
GPRIN2 MUTATED 1 1 3 1 0 4
GPRIN2 WILD-TYPE 222 141 270 121 77 116
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S664.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
GPRIN2 MUTATED 1 3 1 0 1
GPRIN2 WILD-TYPE 177 117 65 92 111
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S665.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
GPRIN2 MUTATED 4 2 0
GPRIN2 WILD-TYPE 275 179 108
'ANKRD12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S666.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ANKRD12 MUTATED 0 1 6 0 2 1 0 0
ANKRD12 WILD-TYPE 21 37 108 97 106 72 19 39
'ANKRD12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S667.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ANKRD12 MUTATED 4 5 1 0 0
ANKRD12 WILD-TYPE 92 147 115 89 56
'ANKRD12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S668.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ANKRD12 MUTATED 2 6 3 6 0
ANKRD12 WILD-TYPE 233 360 79 232 41
'ANKRD12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S669.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ANKRD12 MUTATED 1 3 3 1 3
ANKRD12 WILD-TYPE 115 178 154 82 108
'ANKRD12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S670.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ANKRD12 MUTATED 4 1 1
ANKRD12 WILD-TYPE 142 128 117
'ANKRD12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S671.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ANKRD12 MUTATED 0 1 0 4 1
ANKRD12 WILD-TYPE 59 108 90 100 30
'ANKRD12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S672.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ANKRD12 MUTATED 8 3 7
ANKRD12 WILD-TYPE 484 270 201
'ANKRD12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S673.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ANKRD12 MUTATED 4 2 10 0 1 1
ANKRD12 WILD-TYPE 196 150 261 130 167 51
'ANKRD12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S674.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ANKRD12 MUTATED 4 3 11
ANKRD12 WILD-TYPE 293 202 444
'ANKRD12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S675.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ANKRD12 MUTATED 7 2 7 0 1 1
ANKRD12 WILD-TYPE 216 140 266 122 76 119
'ANKRD12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S676.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ANKRD12 MUTATED 3 1 3 0 1
ANKRD12 WILD-TYPE 175 119 63 92 111
'ANKRD12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S677.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ANKRD12 MUTATED 3 3 2
ANKRD12 WILD-TYPE 276 178 106
'ZNF687 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S678.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ZNF687 MUTATED 0 2 2 4 1 0 0 0
ZNF687 WILD-TYPE 21 36 112 93 107 73 19 39
'ZNF687 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S679.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ZNF687 MUTATED 2 3 0 4 0
ZNF687 WILD-TYPE 94 149 116 85 56
'ZNF687 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S680.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ZNF687 MUTATED 2 3 0 6 0
ZNF687 WILD-TYPE 233 363 82 232 41
'ZNF687 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S681.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ZNF687 MUTATED 4 2 1 0 0
ZNF687 WILD-TYPE 112 179 156 83 111
'ZNF687 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S682.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ZNF687 MUTATED 6 1 1
ZNF687 WILD-TYPE 140 128 117
'ZNF687 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0874 (Fisher's exact test), Q value = 1

Table S683.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ZNF687 MUTATED 0 0 4 3 1
ZNF687 WILD-TYPE 59 109 86 101 30
'ZNF687 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 1

Table S684.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ZNF687 MUTATED 4 7 0
ZNF687 WILD-TYPE 488 266 208

Figure S117.  Get High-res Image Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF687 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S685.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ZNF687 MUTATED 3 1 2 0 5 0
ZNF687 WILD-TYPE 197 151 269 130 163 52
'ZNF687 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0754 (Fisher's exact test), Q value = 1

Table S686.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ZNF687 MUTATED 7 1 3
ZNF687 WILD-TYPE 290 204 452
'ZNF687 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 1

Table S687.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ZNF687 MUTATED 4 1 1 0 0 5
ZNF687 WILD-TYPE 219 141 272 122 77 115

Figure S118.  Get High-res Image Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF687 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S688.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ZNF687 MUTATED 2 2 0 0 1
ZNF687 WILD-TYPE 176 118 66 92 111
'ZNF687 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S689.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ZNF687 MUTATED 4 1 0
ZNF687 WILD-TYPE 275 180 108
'KCNN3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S690.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
KCNN3 MUTATED 1 0 0 2 0 1 0 1
KCNN3 WILD-TYPE 20 38 114 95 108 72 19 38
'KCNN3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S691.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
KCNN3 MUTATED 0 1 2 2 0
KCNN3 WILD-TYPE 96 151 114 87 56
'KCNN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S692.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
KCNN3 MUTATED 3 1 0 5 0
KCNN3 WILD-TYPE 232 365 82 233 41
'KCNN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0977 (Fisher's exact test), Q value = 1

Table S693.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
KCNN3 MUTATED 3 1 0 1 0
KCNN3 WILD-TYPE 113 180 157 82 111
'KCNN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S694.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
KCNN3 MUTATED 3 0 1
KCNN3 WILD-TYPE 143 129 117
'KCNN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S695.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
KCNN3 MUTATED 0 1 2 1 0
KCNN3 WILD-TYPE 59 108 88 103 31
'KCNN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S696.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
KCNN3 MUTATED 5 4 0
KCNN3 WILD-TYPE 487 269 208
'KCNN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S697.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
KCNN3 MUTATED 2 3 1 0 2 1
KCNN3 WILD-TYPE 198 149 270 130 166 51
'KCNN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S698.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
KCNN3 MUTATED 5 1 3
KCNN3 WILD-TYPE 292 204 452
'KCNN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S699.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
KCNN3 MUTATED 4 2 1 1 0 1
KCNN3 WILD-TYPE 219 140 272 121 77 119
'KCNN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S700.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
KCNN3 MUTATED 2 2 0 0 0
KCNN3 WILD-TYPE 176 118 66 92 112
'KCNN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S701.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
KCNN3 MUTATED 3 0 1
KCNN3 WILD-TYPE 276 181 107
'ICOSLG MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S702.  Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ICOSLG MUTATED 0 0 2 1 0 0 0 0
ICOSLG WILD-TYPE 21 38 112 96 108 73 19 39
'ICOSLG MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S703.  Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ICOSLG MUTATED 2 0 0 1 0
ICOSLG WILD-TYPE 94 152 116 88 56
'ICOSLG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 1

Table S704.  Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ICOSLG MUTATED 1 0 0 2 2
ICOSLG WILD-TYPE 234 366 82 236 39

Figure S119.  Get High-res Image Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ICOSLG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S705.  Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ICOSLG MUTATED 1 0 2 0 1
ICOSLG WILD-TYPE 115 181 155 83 110
'ICOSLG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S706.  Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ICOSLG MUTATED 4 1 0
ICOSLG WILD-TYPE 488 272 208
'ICOSLG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S707.  Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ICOSLG MUTATED 1 1 2 0 1 0
ICOSLG WILD-TYPE 199 151 269 130 167 52
'ICOSLG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S708.  Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ICOSLG MUTATED 2 0 3
ICOSLG WILD-TYPE 295 205 452
'ICOSLG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0568 (Fisher's exact test), Q value = 1

Table S709.  Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ICOSLG MUTATED 0 1 0 2 1 1
ICOSLG WILD-TYPE 223 141 273 120 76 119
'PIK3R1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S710.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PIK3R1 MUTATED 0 0 1 1 1 5 0 0
PIK3R1 WILD-TYPE 21 38 113 96 107 68 19 39
'PIK3R1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S711.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PIK3R1 MUTATED 1 1 5 1 0
PIK3R1 WILD-TYPE 95 151 111 88 56
'PIK3R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S712.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
PIK3R1 MUTATED 5 4 1 4 1
PIK3R1 WILD-TYPE 230 362 81 234 40
'PIK3R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S713.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PIK3R1 MUTATED 3 1 3 0 0
PIK3R1 WILD-TYPE 113 180 154 83 111
'PIK3R1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S714.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PIK3R1 MUTATED 3 1 1
PIK3R1 WILD-TYPE 143 128 117
'PIK3R1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 1

Table S715.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PIK3R1 MUTATED 0 0 0 3 2
PIK3R1 WILD-TYPE 59 109 90 101 29

Figure S120.  Get High-res Image Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0883 (Fisher's exact test), Q value = 1

Table S716.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
PIK3R1 MUTATED 10 5 0
PIK3R1 WILD-TYPE 482 268 208
'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S717.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
PIK3R1 MUTATED 2 6 2 1 3 1
PIK3R1 WILD-TYPE 198 146 269 129 165 51
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S718.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
PIK3R1 MUTATED 4 2 8
PIK3R1 WILD-TYPE 293 203 447
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S719.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
PIK3R1 MUTATED 4 1 2 3 1 3
PIK3R1 WILD-TYPE 219 141 271 119 76 117
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S720.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
PIK3R1 MUTATED 3 4 2 0 0
PIK3R1 WILD-TYPE 175 116 64 92 112
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S721.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
PIK3R1 MUTATED 6 2 1
PIK3R1 WILD-TYPE 273 179 107
'MR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S722.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MR1 MUTATED 0 2 0 1 2 0 0 0
MR1 WILD-TYPE 21 36 114 96 106 73 19 39
'MR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S723.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MR1 MUTATED 0 3 1 1 0
MR1 WILD-TYPE 96 149 115 88 56
'MR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S724.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
MR1 MUTATED 2 3 1 1 0
MR1 WILD-TYPE 233 363 81 237 41
'MR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S725.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MR1 MUTATED 0 0 2 0 1
MR1 WILD-TYPE 116 181 155 83 110
'MR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S726.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MR1 MUTATED 2 1 1
MR1 WILD-TYPE 144 128 117
'MR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S727.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MR1 MUTATED 1 1 1 1 0
MR1 WILD-TYPE 58 108 89 103 31
'MR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S728.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
MR1 MUTATED 2 4 1
MR1 WILD-TYPE 490 269 207
'MR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S729.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
MR1 MUTATED 0 2 3 1 1 0
MR1 WILD-TYPE 200 150 268 129 167 52
'MR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S730.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
MR1 MUTATED 3 1 3
MR1 WILD-TYPE 294 204 452
'MR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S731.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
MR1 MUTATED 4 1 0 1 0 1
MR1 WILD-TYPE 219 141 273 121 77 119
'CABYR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S732.  Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
CABYR MUTATED 3 2 0 1 0
CABYR WILD-TYPE 232 364 82 237 41
'CABYR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S733.  Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CABYR MUTATED 2 0 2 0 1
CABYR WILD-TYPE 114 181 155 83 110
'CABYR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S734.  Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
CABYR MUTATED 2 4 0
CABYR WILD-TYPE 490 269 208
'CABYR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00665 (Fisher's exact test), Q value = 1

Table S735.  Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
CABYR MUTATED 0 3 1 0 0 2
CABYR WILD-TYPE 200 149 270 130 168 50

Figure S121.  Get High-res Image Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CABYR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0664 (Fisher's exact test), Q value = 1

Table S736.  Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
CABYR MUTATED 4 0 1
CABYR WILD-TYPE 293 205 454
'CABYR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S737.  Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
CABYR MUTATED 2 2 0 1 0 0
CABYR WILD-TYPE 221 140 273 121 77 120
'CABYR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S738.  Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
CABYR MUTATED 2 2 0 0 1
CABYR WILD-TYPE 176 118 66 92 111
'CABYR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S739.  Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
CABYR MUTATED 4 0 1
CABYR WILD-TYPE 275 181 107
'AKT2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S740.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
AKT2 MUTATED 0 0 0 0 2 0 1 0
AKT2 WILD-TYPE 21 38 114 97 106 73 18 39
'AKT2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S741.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
AKT2 MUTATED 1 1 1 0 0
AKT2 WILD-TYPE 95 151 115 89 56
'AKT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S742.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
AKT2 MUTATED 2 1 1 1 0
AKT2 WILD-TYPE 233 365 81 237 41
'AKT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S743.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
AKT2 MUTATED 0 1 1 2 0
AKT2 WILD-TYPE 116 180 156 81 111
'AKT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S744.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
AKT2 MUTATED 4 1 0
AKT2 WILD-TYPE 488 272 208
'AKT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0903 (Fisher's exact test), Q value = 1

Table S745.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
AKT2 MUTATED 1 3 0 1 0 0
AKT2 WILD-TYPE 199 149 271 129 168 52
'AKT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S746.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
AKT2 MUTATED 1 0 4
AKT2 WILD-TYPE 296 205 451
'AKT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S747.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
AKT2 MUTATED 3 0 1 1 0 0
AKT2 WILD-TYPE 220 142 272 121 77 120
'AKT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S748.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
AKT2 MUTATED 2 0 0 1 0
AKT2 WILD-TYPE 176 120 66 91 112
'AKT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S749.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
AKT2 MUTATED 2 0 1
AKT2 WILD-TYPE 277 181 107
'ZBTB7C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S750.  Gene #67: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ZBTB7C MUTATED 1 2 1 0 0
ZBTB7C WILD-TYPE 234 364 81 238 41
'ZBTB7C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S751.  Gene #67: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ZBTB7C MUTATED 0 1 1 1 0
ZBTB7C WILD-TYPE 116 180 156 82 111
'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S752.  Gene #67: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ZBTB7C MUTATED 2 1 2
ZBTB7C WILD-TYPE 490 272 206
'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S753.  Gene #67: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ZBTB7C MUTATED 2 1 2 0 0 0
ZBTB7C WILD-TYPE 198 151 269 130 168 52
'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S754.  Gene #67: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ZBTB7C MUTATED 1 2 2
ZBTB7C WILD-TYPE 296 203 453
'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S755.  Gene #67: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ZBTB7C MUTATED 1 1 2 1 0 0
ZBTB7C WILD-TYPE 222 141 271 121 77 120
'RIBC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S756.  Gene #68: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RIBC1 MUTATED 0 1 1 0 2 0 0 0
RIBC1 WILD-TYPE 21 37 113 97 106 73 19 39
'RIBC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S757.  Gene #68: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RIBC1 MUTATED 1 3 0 0 0
RIBC1 WILD-TYPE 95 149 116 89 56
'RIBC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S758.  Gene #68: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
RIBC1 MUTATED 2 2 0 0 0
RIBC1 WILD-TYPE 233 364 82 238 41
'RIBC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 1

Table S759.  Gene #68: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RIBC1 MUTATED 0 0 1 2 0
RIBC1 WILD-TYPE 116 181 156 81 111
'RIBC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S760.  Gene #68: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
RIBC1 MUTATED 3 0 1
RIBC1 WILD-TYPE 489 273 207
'RIBC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S761.  Gene #68: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
RIBC1 MUTATED 1 0 2 1 0 0
RIBC1 WILD-TYPE 199 152 269 129 168 52
'RIBC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S762.  Gene #68: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
RIBC1 MUTATED 1 0 3
RIBC1 WILD-TYPE 296 205 452
'RIBC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S763.  Gene #68: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
RIBC1 MUTATED 1 1 1 1 0 0
RIBC1 WILD-TYPE 222 141 272 121 77 120
'CEP57 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S764.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CEP57 MUTATED 0 0 0 1 0 2 0 0
CEP57 WILD-TYPE 21 38 114 96 108 71 19 39
'CEP57 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S765.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CEP57 MUTATED 0 0 2 1 0
CEP57 WILD-TYPE 96 152 114 88 56
'CEP57 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S766.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
CEP57 MUTATED 0 2 1 3 0
CEP57 WILD-TYPE 235 364 81 235 41
'CEP57 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S767.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CEP57 MUTATED 0 1 1 0 3
CEP57 WILD-TYPE 116 180 156 83 108
'CEP57 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S768.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
CEP57 MUTATED 3 2 1
CEP57 WILD-TYPE 489 271 207
'CEP57 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S769.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
CEP57 MUTATED 1 2 2 0 1 0
CEP57 WILD-TYPE 199 150 269 130 167 52
'CEP57 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0791 (Fisher's exact test), Q value = 1

Table S770.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
CEP57 MUTATED 0 3 3
CEP57 WILD-TYPE 297 202 452
'CEP57 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S771.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
CEP57 MUTATED 1 1 3 1 0 0
CEP57 WILD-TYPE 222 141 270 121 77 120
'CEP57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0804 (Fisher's exact test), Q value = 1

Table S772.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
CEP57 MUTATED 0 0 1 0 2
CEP57 WILD-TYPE 178 120 65 92 110
'CEP57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 1

Table S773.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
CEP57 MUTATED 0 3 0
CEP57 WILD-TYPE 279 178 108

Figure S122.  Get High-res Image Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TARBP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S774.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TARBP2 MUTATED 0 1 1 2 0 1 0 0
TARBP2 WILD-TYPE 21 37 113 95 108 72 19 39
'TARBP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S775.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TARBP2 MUTATED 1 1 2 1 0
TARBP2 WILD-TYPE 95 151 114 88 56
'TARBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S776.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
TARBP2 MUTATED 2 0 0 4 0
TARBP2 WILD-TYPE 233 366 82 234 41
'TARBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S777.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TARBP2 MUTATED 1 0 1 0 1
TARBP2 WILD-TYPE 115 181 156 83 110
'TARBP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S778.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TARBP2 MUTATED 4 1 0
TARBP2 WILD-TYPE 142 128 118
'TARBP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S779.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TARBP2 MUTATED 1 0 3 1 0
TARBP2 WILD-TYPE 58 109 87 103 31
'TARBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S780.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
TARBP2 MUTATED 2 4 0
TARBP2 WILD-TYPE 490 269 208
'TARBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S781.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
TARBP2 MUTATED 1 0 2 0 2 1
TARBP2 WILD-TYPE 199 152 269 130 166 51
'TARBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S782.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
TARBP2 MUTATED 4 1 1
TARBP2 WILD-TYPE 293 204 454
'TARBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S783.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
TARBP2 MUTATED 1 2 1 0 1 1
TARBP2 WILD-TYPE 222 140 272 122 76 119
'TARBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S784.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
TARBP2 MUTATED 0 1 0 1 1
TARBP2 WILD-TYPE 178 119 66 91 111
'TARBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S785.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
TARBP2 MUTATED 1 1 1
TARBP2 WILD-TYPE 278 180 107
'OXCT2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S786.  Gene #71: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
OXCT2 MUTATED 0 1 0 0 1 1 0 0
OXCT2 WILD-TYPE 21 37 114 97 107 72 19 39
'OXCT2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S787.  Gene #71: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
OXCT2 MUTATED 0 1 1 0 1
OXCT2 WILD-TYPE 96 151 115 89 55
'OXCT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S788.  Gene #71: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
OXCT2 MUTATED 2 1 0 1 0
OXCT2 WILD-TYPE 233 365 82 237 41
'OXCT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S789.  Gene #71: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
OXCT2 MUTATED 2 1 1
OXCT2 WILD-TYPE 490 272 207
'OXCT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S790.  Gene #71: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
OXCT2 MUTATED 0 1 1 1 0 1
OXCT2 WILD-TYPE 200 151 270 129 168 51
'OXCT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S791.  Gene #71: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
OXCT2 MUTATED 1 1 2
OXCT2 WILD-TYPE 296 204 453
'OXCT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S792.  Gene #71: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
OXCT2 MUTATED 1 1 1 0 1 0
OXCT2 WILD-TYPE 222 141 272 122 76 120
'ANKRD20A4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S793.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ANKRD20A4 MUTATED 0 0 0 0 1 1 1 0
ANKRD20A4 WILD-TYPE 21 38 114 97 107 72 18 39
'ANKRD20A4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0958 (Fisher's exact test), Q value = 1

Table S794.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ANKRD20A4 MUTATED 0 0 2 0 1
ANKRD20A4 WILD-TYPE 96 152 114 89 55
'ANKRD20A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S795.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ANKRD20A4 MUTATED 1 3 0 3 0
ANKRD20A4 WILD-TYPE 234 363 82 235 41
'ANKRD20A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S796.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ANKRD20A4 MUTATED 0 2 1 1 1
ANKRD20A4 WILD-TYPE 116 179 156 82 110
'ANKRD20A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S797.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ANKRD20A4 MUTATED 2 1 0
ANKRD20A4 WILD-TYPE 144 128 118
'ANKRD20A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S798.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ANKRD20A4 MUTATED 1 0 1 1 0
ANKRD20A4 WILD-TYPE 58 109 89 103 31
'ANKRD20A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S799.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ANKRD20A4 MUTATED 2 2 3
ANKRD20A4 WILD-TYPE 490 271 205
'ANKRD20A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S800.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ANKRD20A4 MUTATED 1 0 4 1 0 1
ANKRD20A4 WILD-TYPE 199 152 267 129 168 51
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S801.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ANKRD20A4 MUTATED 2 2 3
ANKRD20A4 WILD-TYPE 295 203 452
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S802.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ANKRD20A4 MUTATED 2 1 3 0 1 0
ANKRD20A4 WILD-TYPE 221 141 270 122 76 120
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S803.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ANKRD20A4 MUTATED 1 0 1 1 2
ANKRD20A4 WILD-TYPE 177 120 65 91 110
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0365 (Fisher's exact test), Q value = 1

Table S804.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ANKRD20A4 MUTATED 0 3 2
ANKRD20A4 WILD-TYPE 279 178 106

Figure S123.  Get High-res Image Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HIST1H3B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S805.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
HIST1H3B MUTATED 0 0 1 1 0 2 0 1
HIST1H3B WILD-TYPE 21 38 113 96 108 71 19 38
'HIST1H3B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S806.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
HIST1H3B MUTATED 1 1 2 1 0
HIST1H3B WILD-TYPE 95 151 114 88 56
'HIST1H3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S807.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
HIST1H3B MUTATED 3 3 1 3 1
HIST1H3B WILD-TYPE 232 363 81 235 40
'HIST1H3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S808.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
HIST1H3B MUTATED 2 2 4 0 1
HIST1H3B WILD-TYPE 114 179 153 83 110
'HIST1H3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S809.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
HIST1H3B MUTATED 3 1 1
HIST1H3B WILD-TYPE 143 128 117
'HIST1H3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S810.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
HIST1H3B MUTATED 0 2 1 1 1
HIST1H3B WILD-TYPE 59 107 89 103 30
'HIST1H3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S811.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
HIST1H3B MUTATED 6 3 2
HIST1H3B WILD-TYPE 486 270 206
'HIST1H3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S812.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
HIST1H3B MUTATED 2 5 2 0 2 0
HIST1H3B WILD-TYPE 198 147 269 130 166 52
'HIST1H3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S813.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
HIST1H3B MUTATED 3 2 6
HIST1H3B WILD-TYPE 294 203 449
'HIST1H3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S814.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
HIST1H3B MUTATED 6 0 3 0 0 2
HIST1H3B WILD-TYPE 217 142 270 122 77 118
'HIST1H3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S815.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
HIST1H3B MUTATED 3 1 1 0 1
HIST1H3B WILD-TYPE 175 119 65 92 111
'HIST1H3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S816.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
HIST1H3B MUTATED 4 2 0
HIST1H3B WILD-TYPE 275 179 108
'MED23 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 1

Table S817.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MED23 MUTATED 0 1 1 0 1 1 0 3
MED23 WILD-TYPE 21 37 113 97 107 72 19 36
'MED23 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S818.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MED23 MUTATED 1 5 1 0 0
MED23 WILD-TYPE 95 147 115 89 56
'MED23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S819.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
MED23 MUTATED 2 10 1 1 0
MED23 WILD-TYPE 233 356 81 237 41
'MED23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0432 (Fisher's exact test), Q value = 1

Table S820.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MED23 MUTATED 0 4 2 4 0
MED23 WILD-TYPE 116 177 155 79 111

Figure S124.  Get High-res Image Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MED23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S821.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MED23 MUTATED 0 3 1
MED23 WILD-TYPE 146 126 117
'MED23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S822.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MED23 MUTATED 0 2 0 2 0
MED23 WILD-TYPE 59 107 90 102 31
'MED23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0284 (Fisher's exact test), Q value = 1

Table S823.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
MED23 MUTATED 6 1 7
MED23 WILD-TYPE 486 272 201

Figure S125.  Get High-res Image Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MED23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0319 (Fisher's exact test), Q value = 1

Table S824.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
MED23 MUTATED 4 1 9 0 0 0
MED23 WILD-TYPE 196 151 262 130 168 52

Figure S126.  Get High-res Image Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MED23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S825.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
MED23 MUTATED 2 5 7
MED23 WILD-TYPE 295 200 448
'MED23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S826.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
MED23 MUTATED 3 1 6 2 2 0
MED23 WILD-TYPE 220 141 267 120 75 120
'MED23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S827.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
MED23 MUTATED 2 0 1 3 1
MED23 WILD-TYPE 176 120 65 89 111
'MED23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S828.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
MED23 MUTATED 2 3 2
MED23 WILD-TYPE 277 178 106
'MUC6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 1

Table S829.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MUC6 MUTATED 2 2 0 3 1 0 0 1
MUC6 WILD-TYPE 19 36 114 94 107 73 19 38

Figure S127.  Get High-res Image Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MUC6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S830.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MUC6 MUTATED 0 3 3 2 1
MUC6 WILD-TYPE 96 149 113 87 55
'MUC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S831.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
MUC6 MUTATED 4 4 0 6 0
MUC6 WILD-TYPE 231 362 82 232 41
'MUC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S832.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MUC6 MUTATED 3 0 3 2 2
MUC6 WILD-TYPE 113 181 154 81 109
'MUC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S833.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MUC6 MUTATED 4 1 4
MUC6 WILD-TYPE 142 128 114
'MUC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S834.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MUC6 MUTATED 1 3 2 2 1
MUC6 WILD-TYPE 58 106 88 102 30
'MUC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S835.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
MUC6 MUTATED 5 7 2
MUC6 WILD-TYPE 487 266 206
'MUC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S836.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
MUC6 MUTATED 1 3 3 1 5 1
MUC6 WILD-TYPE 199 149 268 129 163 51
'MUC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S837.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
MUC6 MUTATED 6 1 7
MUC6 WILD-TYPE 291 204 448
'MUC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S838.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
MUC6 MUTATED 6 1 1 1 1 4
MUC6 WILD-TYPE 217 141 272 121 76 116
'MUC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S839.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
MUC6 MUTATED 3 3 0 0 0
MUC6 WILD-TYPE 175 117 66 92 112
'MUC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0516 (Fisher's exact test), Q value = 1

Table S840.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
MUC6 MUTATED 6 0 0
MUC6 WILD-TYPE 273 181 108
'PSIP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S841.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PSIP1 MUTATED 0 0 0 1 1 1 0 1
PSIP1 WILD-TYPE 21 38 114 96 107 72 19 38
'PSIP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S842.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PSIP1 MUTATED 0 1 1 1 1
PSIP1 WILD-TYPE 96 151 115 88 55
'PSIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S843.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
PSIP1 MUTATED 2 3 2 1 0
PSIP1 WILD-TYPE 233 363 80 237 41
'PSIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S844.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PSIP1 MUTATED 0 2 1 1 1
PSIP1 WILD-TYPE 116 179 156 82 110
'PSIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S845.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PSIP1 MUTATED 1 1 2
PSIP1 WILD-TYPE 145 128 116
'PSIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S846.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PSIP1 MUTATED 1 1 1 1 0
PSIP1 WILD-TYPE 58 108 89 103 31
'PSIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S847.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
PSIP1 MUTATED 6 2 0
PSIP1 WILD-TYPE 486 271 208
'PSIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S848.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
PSIP1 MUTATED 2 2 1 2 1 0
PSIP1 WILD-TYPE 198 150 270 128 167 52
'PSIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S849.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
PSIP1 MUTATED 1 1 5
PSIP1 WILD-TYPE 296 204 450
'PSIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S850.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
PSIP1 MUTATED 2 1 3 0 1 0
PSIP1 WILD-TYPE 221 141 270 122 76 120
'PSIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S851.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
PSIP1 MUTATED 2 0 0 1 1
PSIP1 WILD-TYPE 176 120 66 91 111
'PSIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S852.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
PSIP1 MUTATED 2 0 2
PSIP1 WILD-TYPE 277 181 106
'PCNXL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S853.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PCNXL2 MUTATED 0 1 5 2 3 2 0 0
PCNXL2 WILD-TYPE 21 37 109 95 105 71 19 39
'PCNXL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S854.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PCNXL2 MUTATED 3 3 3 2 2
PCNXL2 WILD-TYPE 93 149 113 87 54
'PCNXL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S855.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
PCNXL2 MUTATED 5 6 2 7 1
PCNXL2 WILD-TYPE 230 360 80 231 40
'PCNXL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S856.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PCNXL2 MUTATED 3 4 4 2 1
PCNXL2 WILD-TYPE 113 177 153 81 110
'PCNXL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S857.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PCNXL2 MUTATED 4 4 1
PCNXL2 WILD-TYPE 142 125 117
'PCNXL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S858.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PCNXL2 MUTATED 1 1 1 5 1
PCNXL2 WILD-TYPE 58 108 89 99 30
'PCNXL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S859.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
PCNXL2 MUTATED 14 5 2
PCNXL2 WILD-TYPE 478 268 206
'PCNXL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S860.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
PCNXL2 MUTATED 3 4 5 4 4 1
PCNXL2 WILD-TYPE 197 148 266 126 164 51
'PCNXL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S861.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
PCNXL2 MUTATED 7 2 12
PCNXL2 WILD-TYPE 290 203 443
'PCNXL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S862.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
PCNXL2 MUTATED 8 2 6 1 2 2
PCNXL2 WILD-TYPE 215 140 267 121 75 118
'PCNXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S863.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
PCNXL2 MUTATED 4 2 1 1 1
PCNXL2 WILD-TYPE 174 118 65 91 111
'PCNXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S864.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
PCNXL2 MUTATED 5 2 2
PCNXL2 WILD-TYPE 274 179 106
'SLC35B2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S865.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SLC35B2 MUTATED 0 0 1 1 1 1 0 0
SLC35B2 WILD-TYPE 21 38 113 96 107 72 19 39
'SLC35B2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S866.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SLC35B2 MUTATED 1 0 2 0 1
SLC35B2 WILD-TYPE 95 152 114 89 55
'SLC35B2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S867.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
SLC35B2 MUTATED 1 3 1 2 0
SLC35B2 WILD-TYPE 234 363 81 236 41
'SLC35B2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S868.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
SLC35B2 MUTATED 2 2 0
SLC35B2 WILD-TYPE 144 127 118
'SLC35B2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S869.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
SLC35B2 MUTATED 1 0 2 1 0
SLC35B2 WILD-TYPE 58 109 88 103 31
'SLC35B2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S870.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
SLC35B2 MUTATED 3 3 1
SLC35B2 WILD-TYPE 489 270 207
'SLC35B2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S871.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
SLC35B2 MUTATED 2 1 1 1 1 1
SLC35B2 WILD-TYPE 198 151 270 129 167 51
'SLC35B2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S872.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
SLC35B2 MUTATED 3 1 3
SLC35B2 WILD-TYPE 294 204 452
'SLC35B2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S873.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
SLC35B2 MUTATED 2 2 2 0 1 0
SLC35B2 WILD-TYPE 221 140 271 122 76 120
'SLC35B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S874.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
SLC35B2 MUTATED 2 1 1 0 1
SLC35B2 WILD-TYPE 176 119 65 92 111
'SLC35B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S875.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
SLC35B2 MUTATED 2 2 1
SLC35B2 WILD-TYPE 277 179 107
'ANGPT4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S876.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ANGPT4 MUTATED 0 1 1 1 0 0 1 0
ANGPT4 WILD-TYPE 21 37 113 96 108 73 18 39
'ANGPT4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S877.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ANGPT4 MUTATED 1 1 1 1 0
ANGPT4 WILD-TYPE 95 151 115 88 56
'ANGPT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S878.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ANGPT4 MUTATED 4 2 2 2 0
ANGPT4 WILD-TYPE 231 364 80 236 41
'ANGPT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S879.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ANGPT4 MUTATED 0 0 3 1 2
ANGPT4 WILD-TYPE 116 181 154 82 109
'ANGPT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S880.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ANGPT4 MUTATED 1 2 0
ANGPT4 WILD-TYPE 145 127 118
'ANGPT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S881.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ANGPT4 MUTATED 0 0 1 2 0
ANGPT4 WILD-TYPE 59 109 89 102 31
'ANGPT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S882.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ANGPT4 MUTATED 3 5 2
ANGPT4 WILD-TYPE 489 268 206
'ANGPT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0735 (Fisher's exact test), Q value = 1

Table S883.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ANGPT4 MUTATED 1 4 2 0 1 2
ANGPT4 WILD-TYPE 199 148 269 130 167 50
'ANGPT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S884.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ANGPT4 MUTATED 5 2 3
ANGPT4 WILD-TYPE 292 203 452
'ANGPT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S885.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ANGPT4 MUTATED 4 3 3 0 0 0
ANGPT4 WILD-TYPE 219 139 270 122 77 120
'ANGPT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S886.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ANGPT4 MUTATED 1 1 1 1 1
ANGPT4 WILD-TYPE 177 119 65 91 111
'ANGPT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S887.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ANGPT4 MUTATED 2 3 0
ANGPT4 WILD-TYPE 277 178 108
'MKL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S888.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MKL1 MUTATED 0 0 2 0 1 1 0 0
MKL1 WILD-TYPE 21 38 112 97 107 72 19 39
'MKL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S889.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MKL1 MUTATED 2 1 1 0 0
MKL1 WILD-TYPE 94 151 115 89 56
'MKL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S890.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
MKL1 MUTATED 3 2 0 0 0
MKL1 WILD-TYPE 232 364 82 238 41
'MKL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S891.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MKL1 MUTATED 2 1 0
MKL1 WILD-TYPE 144 128 118
'MKL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0975 (Fisher's exact test), Q value = 1

Table S892.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MKL1 MUTATED 0 0 0 2 1
MKL1 WILD-TYPE 59 109 90 102 30
'MKL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S893.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
MKL1 MUTATED 3 2 0
MKL1 WILD-TYPE 489 271 208
'MKL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0722 (Fisher's exact test), Q value = 1

Table S894.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
MKL1 MUTATED 2 2 0 0 0 1
MKL1 WILD-TYPE 198 150 271 130 168 51
'MKL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S895.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
MKL1 MUTATED 1 1 3
MKL1 WILD-TYPE 296 204 452
'MKL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S896.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
MKL1 MUTATED 3 1 0 0 1 0
MKL1 WILD-TYPE 220 141 273 122 76 120
'NBPF9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S897.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
NBPF9 MUTATED 1 0 1 1 2 0 0 0
NBPF9 WILD-TYPE 20 38 113 96 106 73 19 39
'NBPF9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S898.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
NBPF9 MUTATED 0 1 2 1 1
NBPF9 WILD-TYPE 96 151 114 88 55
'NBPF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S899.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
NBPF9 MUTATED 1 2 1 1 0
NBPF9 WILD-TYPE 234 364 81 237 41
'NBPF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S900.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
NBPF9 MUTATED 2 1 2
NBPF9 WILD-TYPE 144 128 116
'NBPF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S901.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
NBPF9 MUTATED 1 2 1 1 0
NBPF9 WILD-TYPE 58 107 89 103 31
'NBPF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S902.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
NBPF9 MUTATED 4 1 0
NBPF9 WILD-TYPE 488 272 208
'NBPF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S903.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
NBPF9 MUTATED 1 3 0 0 1 0
NBPF9 WILD-TYPE 199 149 271 130 167 52
'NBPF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S904.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
NBPF9 MUTATED 2 0 3
NBPF9 WILD-TYPE 295 205 452
'NBPF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0262 (Fisher's exact test), Q value = 1

Table S905.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
NBPF9 MUTATED 0 2 0 2 1 0
NBPF9 WILD-TYPE 223 140 273 120 76 120

Figure S128.  Get High-res Image Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PRICKLE3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S906.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PRICKLE3 MUTATED 1 0 0 3 1 2 0 0
PRICKLE3 WILD-TYPE 20 38 114 94 107 71 19 39
'PRICKLE3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0274 (Fisher's exact test), Q value = 1

Table S907.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PRICKLE3 MUTATED 0 0 2 3 2
PRICKLE3 WILD-TYPE 96 152 114 86 54

Figure S129.  Get High-res Image Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PRICKLE3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S908.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
PRICKLE3 MUTATED 2 4 1 3 0
PRICKLE3 WILD-TYPE 233 362 81 235 41
'PRICKLE3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 1

Table S909.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PRICKLE3 MUTATED 0 1 1 3 0
PRICKLE3 WILD-TYPE 116 180 156 80 111

Figure S130.  Get High-res Image Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PRICKLE3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S910.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PRICKLE3 MUTATED 4 1 2
PRICKLE3 WILD-TYPE 142 128 116
'PRICKLE3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S911.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PRICKLE3 MUTATED 0 3 2 1 1
PRICKLE3 WILD-TYPE 59 106 88 103 30
'PRICKLE3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S912.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
PRICKLE3 MUTATED 4 6 1
PRICKLE3 WILD-TYPE 488 267 207
'PRICKLE3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S913.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
PRICKLE3 MUTATED 2 4 1 0 3 1
PRICKLE3 WILD-TYPE 198 148 270 130 165 51
'PRICKLE3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S914.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
PRICKLE3 MUTATED 5 2 4
PRICKLE3 WILD-TYPE 292 203 451
'PRICKLE3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S915.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
PRICKLE3 MUTATED 2 3 1 1 1 3
PRICKLE3 WILD-TYPE 221 139 272 121 76 117
'PRICKLE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S916.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
PRICKLE3 MUTATED 2 0 1 0 1
PRICKLE3 WILD-TYPE 176 120 65 92 111
'PRICKLE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S917.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
PRICKLE3 MUTATED 2 2 0
PRICKLE3 WILD-TYPE 277 179 108
'CCDC82 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S918.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CCDC82 MUTATED 0 0 3 0 0 1 0 0
CCDC82 WILD-TYPE 21 38 111 97 108 72 19 39
'CCDC82 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0587 (Fisher's exact test), Q value = 1

Table S919.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CCDC82 MUTATED 3 0 1 0 0
CCDC82 WILD-TYPE 93 152 115 89 56
'CCDC82 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S920.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
CCDC82 MUTATED 1 2 0 3 0
CCDC82 WILD-TYPE 234 364 82 235 41
'CCDC82 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 1

Table S921.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CCDC82 MUTATED 4 0 0
CCDC82 WILD-TYPE 142 129 118

Figure S131.  Get High-res Image Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CCDC82 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S922.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CCDC82 MUTATED 0 0 1 3 0
CCDC82 WILD-TYPE 59 109 89 101 31
'CCDC82 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S923.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
CCDC82 MUTATED 5 1 0
CCDC82 WILD-TYPE 487 272 208
'CCDC82 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00238 (Fisher's exact test), Q value = 1

Table S924.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
CCDC82 MUTATED 0 5 0 0 1 0
CCDC82 WILD-TYPE 200 147 271 130 167 52

Figure S132.  Get High-res Image Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC82 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S925.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
CCDC82 MUTATED 3 1 2
CCDC82 WILD-TYPE 294 204 453
'CCDC82 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S926.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
CCDC82 MUTATED 3 0 1 1 0 1
CCDC82 WILD-TYPE 220 142 272 121 77 119
'CCDC82 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S927.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
CCDC82 MUTATED 1 1 0 0 1
CCDC82 WILD-TYPE 177 119 66 92 111
'CCDC82 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S928.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
CCDC82 MUTATED 2 1 0
CCDC82 WILD-TYPE 277 180 108
'CXCR3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S929.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CXCR3 MUTATED 0 0 1 1 0 0 0 1
CXCR3 WILD-TYPE 21 38 113 96 108 73 19 38
'CXCR3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S930.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CXCR3 MUTATED 1 1 0 1 0
CXCR3 WILD-TYPE 95 151 116 88 56
'CXCR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S931.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
CXCR3 MUTATED 1 3 0 1 1
CXCR3 WILD-TYPE 234 363 82 237 40
'CXCR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S932.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CXCR3 MUTATED 0 1 1 1 0
CXCR3 WILD-TYPE 116 180 156 82 111
'CXCR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S933.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CXCR3 MUTATED 1 1 1
CXCR3 WILD-TYPE 145 128 117
'CXCR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S934.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CXCR3 MUTATED 0 1 1 1 0
CXCR3 WILD-TYPE 59 108 89 103 31
'CXCR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S935.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
CXCR3 MUTATED 3 2 1
CXCR3 WILD-TYPE 489 271 207
'CXCR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S936.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
CXCR3 MUTATED 2 0 1 1 1 1
CXCR3 WILD-TYPE 198 152 270 129 167 51
'CXCR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S937.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
CXCR3 MUTATED 2 1 3
CXCR3 WILD-TYPE 295 204 452
'CXCR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S938.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
CXCR3 MUTATED 2 1 2 0 0 1
CXCR3 WILD-TYPE 221 141 271 122 77 119
'CXCR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S939.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
CXCR3 MUTATED 1 0 0 1 2
CXCR3 WILD-TYPE 177 120 66 91 110
'CXCR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S940.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
CXCR3 MUTATED 1 2 1
CXCR3 WILD-TYPE 278 179 107
'TPP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0871 (Fisher's exact test), Q value = 1

Table S941.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TPP2 MUTATED 1 0 0 0 3 0 0 0
TPP2 WILD-TYPE 20 38 114 97 105 73 19 39
'TPP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S942.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TPP2 MUTATED 1 2 1 0 0
TPP2 WILD-TYPE 95 150 115 89 56
'TPP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S943.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
TPP2 MUTATED 2 3 1 2 0
TPP2 WILD-TYPE 233 363 81 236 41
'TPP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S944.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TPP2 MUTATED 2 2 1 0 0
TPP2 WILD-TYPE 114 179 156 83 111
'TPP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S945.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
TPP2 MUTATED 5 2 1
TPP2 WILD-TYPE 487 271 207
'TPP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S946.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
TPP2 MUTATED 2 2 1 1 2 0
TPP2 WILD-TYPE 198 150 270 129 166 52
'TPP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S947.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
TPP2 MUTATED 4 0 4
TPP2 WILD-TYPE 293 205 451
'TPP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S948.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
TPP2 MUTATED 2 1 1 1 1 2
TPP2 WILD-TYPE 221 141 272 121 76 118
'TPP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S949.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
TPP2 MUTATED 2 2 0 0 1
TPP2 WILD-TYPE 176 118 66 92 111
'TPP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S950.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
TPP2 MUTATED 4 1 0
TPP2 WILD-TYPE 275 180 108
'C15ORF39 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S951.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
C15ORF39 MUTATED 0 0 0 2 1 2 0 0
C15ORF39 WILD-TYPE 21 38 114 95 107 71 19 39
'C15ORF39 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S952.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
C15ORF39 MUTATED 0 1 2 2 0
C15ORF39 WILD-TYPE 96 151 114 87 56
'C15ORF39 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00574 (Fisher's exact test), Q value = 1

Table S953.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
C15ORF39 MUTATED 1 0 0 6 1
C15ORF39 WILD-TYPE 234 366 82 232 40

Figure S133.  Get High-res Image Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C15ORF39 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 1

Table S954.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
C15ORF39 MUTATED 4 1 0 0 0
C15ORF39 WILD-TYPE 112 180 157 83 111

Figure S134.  Get High-res Image Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C15ORF39 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S955.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
C15ORF39 MUTATED 2 0 1
C15ORF39 WILD-TYPE 144 129 117
'C15ORF39 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S956.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
C15ORF39 MUTATED 0 1 2 0 0
C15ORF39 WILD-TYPE 59 108 88 104 31
'C15ORF39 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00651 (Fisher's exact test), Q value = 1

Table S957.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
C15ORF39 MUTATED 2 7 0
C15ORF39 WILD-TYPE 490 266 208

Figure S135.  Get High-res Image Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C15ORF39 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00096 (Fisher's exact test), Q value = 1

Table S958.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
C15ORF39 MUTATED 0 2 0 0 6 1
C15ORF39 WILD-TYPE 200 150 271 130 162 51

Figure S136.  Get High-res Image Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C15ORF39 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00407 (Fisher's exact test), Q value = 1

Table S959.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
C15ORF39 MUTATED 7 0 1
C15ORF39 WILD-TYPE 290 205 454

Figure S137.  Get High-res Image Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C15ORF39 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00564 (Fisher's exact test), Q value = 1

Table S960.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
C15ORF39 MUTATED 1 3 0 0 0 4
C15ORF39 WILD-TYPE 222 139 273 122 77 116

Figure S138.  Get High-res Image Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C15ORF39 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S961.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
C15ORF39 MUTATED 1 3 0 0 1
C15ORF39 WILD-TYPE 177 117 66 92 111
'C15ORF39 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S962.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
C15ORF39 MUTATED 5 0 0
C15ORF39 WILD-TYPE 274 181 108
'SDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S963.  Gene #87: 'SDC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
SDC1 MUTATED 1 1 0 1 0
SDC1 WILD-TYPE 234 365 82 237 41
'SDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S964.  Gene #87: 'SDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
SDC1 MUTATED 1 2 0
SDC1 WILD-TYPE 491 271 208
'SDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 1

Table S965.  Gene #87: 'SDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
SDC1 MUTATED 0 0 1 0 0 2
SDC1 WILD-TYPE 200 152 270 130 168 50

Figure S139.  Get High-res Image Gene #87: 'SDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S966.  Gene #87: 'SDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
SDC1 MUTATED 1 1 1
SDC1 WILD-TYPE 296 204 454
'SDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S967.  Gene #87: 'SDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
SDC1 MUTATED 2 0 1 0 0 0
SDC1 WILD-TYPE 221 142 272 122 77 120
'CASP8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S968.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CASP8 MUTATED 0 0 1 0 3 0 0 1
CASP8 WILD-TYPE 21 38 113 97 105 73 19 38
'CASP8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S969.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CASP8 MUTATED 1 3 0 0 1
CASP8 WILD-TYPE 95 149 116 89 55
'CASP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S970.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
CASP8 MUTATED 2 4 3 3 0
CASP8 WILD-TYPE 233 362 79 235 41
'CASP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S971.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CASP8 MUTATED 2 3 0 2 2
CASP8 WILD-TYPE 114 178 157 81 109
'CASP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S972.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CASP8 MUTATED 1 3 1
CASP8 WILD-TYPE 145 126 117
'CASP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S973.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CASP8 MUTATED 2 1 1 1 0
CASP8 WILD-TYPE 57 108 89 103 31
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S974.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
CASP8 MUTATED 6 3 3
CASP8 WILD-TYPE 486 270 205
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S975.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
CASP8 MUTATED 0 2 4 3 3 0
CASP8 WILD-TYPE 200 150 267 127 165 52
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S976.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
CASP8 MUTATED 4 3 5
CASP8 WILD-TYPE 293 202 450
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S977.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
CASP8 MUTATED 2 2 3 2 0 3
CASP8 WILD-TYPE 221 140 270 120 77 117
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S978.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
CASP8 MUTATED 1 3 2 1 0
CASP8 WILD-TYPE 177 117 64 91 112
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S979.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
CASP8 MUTATED 4 2 1
CASP8 WILD-TYPE 275 179 107
'TNRC6B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S980.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TNRC6B MUTATED 0 1 1 4 3 0 0 0
TNRC6B WILD-TYPE 21 37 113 93 105 73 19 39
'TNRC6B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S981.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TNRC6B MUTATED 1 3 0 4 1
TNRC6B WILD-TYPE 95 149 116 85 55
'TNRC6B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S982.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
TNRC6B MUTATED 2 8 1 6 0
TNRC6B WILD-TYPE 233 358 81 232 41
'TNRC6B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S983.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TNRC6B MUTATED 2 4 5 2 2
TNRC6B WILD-TYPE 114 177 152 81 109
'TNRC6B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S984.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TNRC6B MUTATED 4 1 2
TNRC6B WILD-TYPE 142 128 116
'TNRC6B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S985.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TNRC6B MUTATED 1 1 4 1 0
TNRC6B WILD-TYPE 58 108 86 103 31
'TNRC6B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S986.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
TNRC6B MUTATED 9 6 3
TNRC6B WILD-TYPE 483 267 205
'TNRC6B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S987.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
TNRC6B MUTATED 1 4 5 2 5 1
TNRC6B WILD-TYPE 199 148 266 128 163 51
'TNRC6B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S988.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
TNRC6B MUTATED 6 3 9
TNRC6B WILD-TYPE 291 202 446
'TNRC6B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S989.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
TNRC6B MUTATED 2 2 8 3 0 3
TNRC6B WILD-TYPE 221 140 265 119 77 117
'TNRC6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S990.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
TNRC6B MUTATED 2 3 1 0 2
TNRC6B WILD-TYPE 176 117 65 92 110
'TNRC6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S991.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
TNRC6B MUTATED 4 4 0
TNRC6B WILD-TYPE 275 177 108
'IRS4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S992.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
IRS4 MUTATED 1 2 1 1 0 1 0 1
IRS4 WILD-TYPE 20 36 113 96 108 72 19 38
'IRS4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S993.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
IRS4 MUTATED 1 4 1 1 0
IRS4 WILD-TYPE 95 148 115 88 56
'IRS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S994.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
IRS4 MUTATED 3 2 0 6 0
IRS4 WILD-TYPE 232 364 82 232 41
'IRS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S995.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
IRS4 MUTATED 3 1 2 1 2
IRS4 WILD-TYPE 113 180 155 82 109
'IRS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S996.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
IRS4 MUTATED 3 2 0
IRS4 WILD-TYPE 143 127 118
'IRS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S997.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
IRS4 MUTATED 1 1 1 2 0
IRS4 WILD-TYPE 58 108 89 102 31
'IRS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S998.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
IRS4 MUTATED 3 5 3
IRS4 WILD-TYPE 489 268 205
'IRS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S999.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
IRS4 MUTATED 2 0 5 0 3 1
IRS4 WILD-TYPE 198 152 266 130 165 51
'IRS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S1000.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
IRS4 MUTATED 4 1 5
IRS4 WILD-TYPE 293 204 450
'IRS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S1001.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
IRS4 MUTATED 4 2 2 1 0 1
IRS4 WILD-TYPE 219 140 271 121 77 119
'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S1002.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
IRS4 MUTATED 2 1 0 0 1
IRS4 WILD-TYPE 176 119 66 92 111
'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S1003.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
IRS4 MUTATED 3 1 0
IRS4 WILD-TYPE 276 180 108
'RHOA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S1004.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RHOA MUTATED 0 0 1 1 0 1 0 0
RHOA WILD-TYPE 21 38 113 96 108 72 19 39
'RHOA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S1005.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RHOA MUTATED 1 0 1 1 0
RHOA WILD-TYPE 95 152 115 88 56
'RHOA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S1006.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
RHOA MUTATED 2 2 1 1 0
RHOA WILD-TYPE 233 364 81 237 41
'RHOA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S1007.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RHOA MUTATED 1 0 2 1 0
RHOA WILD-TYPE 115 181 155 82 111
'RHOA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S1008.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
RHOA MUTATED 3 0 0
RHOA WILD-TYPE 143 129 118
'RHOA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S1009.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
RHOA MUTATED 0 0 1 1 1
RHOA WILD-TYPE 59 109 89 103 30
'RHOA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S1010.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
RHOA MUTATED 3 3 0
RHOA WILD-TYPE 489 270 208
'RHOA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S1011.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
RHOA MUTATED 0 2 2 0 1 1
RHOA WILD-TYPE 200 150 269 130 167 51
'RHOA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1012.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
RHOA MUTATED 2 1 3
RHOA WILD-TYPE 295 204 452
'RHOA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1013.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
RHOA MUTATED 3 0 2 0 0 1
RHOA WILD-TYPE 220 142 271 122 77 119
'TTPAL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S1014.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TTPAL MUTATED 0 1 0 2 0 0 0 0
TTPAL WILD-TYPE 21 37 114 95 108 73 19 39
'TTPAL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S1015.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TTPAL MUTATED 0 1 0 2 0
TTPAL WILD-TYPE 96 151 116 87 56
'TTPAL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1016.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
TTPAL MUTATED 1 0 0 3 0
TTPAL WILD-TYPE 234 366 82 235 41
'TTPAL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S1017.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TTPAL MUTATED 2 0 1
TTPAL WILD-TYPE 144 129 117
'TTPAL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S1018.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TTPAL MUTATED 0 0 2 1 0
TTPAL WILD-TYPE 59 109 88 103 31
'TTPAL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 1

Table S1019.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
TTPAL MUTATED 0 3 1
TTPAL WILD-TYPE 492 270 207

Figure S140.  Get High-res Image Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TTPAL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S1020.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
TTPAL MUTATED 0 0 2 0 2 0
TTPAL WILD-TYPE 200 152 269 130 166 52
'TTPAL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S1021.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
TTPAL MUTATED 3 0 1
TTPAL WILD-TYPE 294 205 454
'TTPAL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S1022.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
TTPAL MUTATED 1 0 0 1 0 2
TTPAL WILD-TYPE 222 142 273 121 77 118
'MLL4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1023.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MLL4 MUTATED 1 1 4 2 0 1 0 1
MLL4 WILD-TYPE 20 37 110 95 108 72 19 38
'MLL4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1024.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MLL4 MUTATED 4 2 2 2 0
MLL4 WILD-TYPE 92 150 114 87 56
'MLL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S1025.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
MLL4 MUTATED 3 4 2 4 0
MLL4 WILD-TYPE 232 362 80 234 41
'MLL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S1026.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MLL4 MUTATED 0 1 2 1 0
MLL4 WILD-TYPE 116 180 155 82 111
'MLL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S1027.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MLL4 MUTATED 6 1 1
MLL4 WILD-TYPE 140 128 117
'MLL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S1028.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MLL4 MUTATED 0 1 3 4 0
MLL4 WILD-TYPE 59 108 87 100 31
'MLL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S1029.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
MLL4 MUTATED 5 5 3
MLL4 WILD-TYPE 487 268 205
'MLL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S1030.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
MLL4 MUTATED 2 6 3 0 2 0
MLL4 WILD-TYPE 198 146 268 130 166 52
'MLL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S1031.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
MLL4 MUTATED 7 1 5
MLL4 WILD-TYPE 290 204 450
'MLL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00224 (Fisher's exact test), Q value = 1

Table S1032.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
MLL4 MUTATED 8 4 0 0 0 1
MLL4 WILD-TYPE 215 138 273 122 77 119

Figure S141.  Get High-res Image Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S1033.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
MLL4 MUTATED 3 0 0 0 0
MLL4 WILD-TYPE 175 120 66 92 112
'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S1034.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
MLL4 MUTATED 3 0 0
MLL4 WILD-TYPE 276 181 108
'ATHL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1035.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ATHL1 MUTATED 0 0 3 1 2 0 0 0
ATHL1 WILD-TYPE 21 38 111 96 106 73 19 39
'ATHL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S1036.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ATHL1 MUTATED 3 2 0 1 0
ATHL1 WILD-TYPE 93 150 116 88 56
'ATHL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S1037.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ATHL1 MUTATED 3 1 0 5 1
ATHL1 WILD-TYPE 232 365 82 233 40
'ATHL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S1038.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ATHL1 MUTATED 1 1 4 1 0
ATHL1 WILD-TYPE 115 180 153 82 111
'ATHL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1039.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ATHL1 MUTATED 2 2 1
ATHL1 WILD-TYPE 144 127 117
'ATHL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S1040.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ATHL1 MUTATED 0 1 1 3 0
ATHL1 WILD-TYPE 59 108 89 101 31
'ATHL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S1041.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ATHL1 MUTATED 7 3 0
ATHL1 WILD-TYPE 485 270 208
'ATHL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S1042.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ATHL1 MUTATED 1 5 2 0 2 0
ATHL1 WILD-TYPE 199 147 269 130 166 52
'ATHL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S1043.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ATHL1 MUTATED 5 0 5
ATHL1 WILD-TYPE 292 205 450
'ATHL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1044.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ATHL1 MUTATED 5 2 1 0 0 2
ATHL1 WILD-TYPE 218 140 272 122 77 118
'ATHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S1045.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ATHL1 MUTATED 5 1 0 0 1
ATHL1 WILD-TYPE 173 119 66 92 111
'ATHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S1046.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ATHL1 MUTATED 5 1 1
ATHL1 WILD-TYPE 274 180 107
'TMEM120B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S1047.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TMEM120B MUTATED 0 0 0 1 1 0 1 0
TMEM120B WILD-TYPE 21 38 114 96 107 73 18 39
'TMEM120B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1048.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TMEM120B MUTATED 0 0 1 1 1
TMEM120B WILD-TYPE 96 152 115 88 55
'TMEM120B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S1049.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
TMEM120B MUTATED 1 2 0 2 0
TMEM120B WILD-TYPE 234 364 82 236 41
'TMEM120B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1050.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TMEM120B MUTATED 1 2 1 0 1
TMEM120B WILD-TYPE 115 179 156 83 110
'TMEM120B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S1051.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
TMEM120B MUTATED 1 2 2
TMEM120B WILD-TYPE 491 271 206
'TMEM120B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S1052.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
TMEM120B MUTATED 0 1 2 1 1 0
TMEM120B WILD-TYPE 200 151 269 129 167 52
'TMEM120B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S1053.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
TMEM120B MUTATED 2 2 1
TMEM120B WILD-TYPE 295 203 454
'TMEM120B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S1054.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
TMEM120B MUTATED 1 0 2 0 1 1
TMEM120B WILD-TYPE 222 142 271 122 76 119
'TMEM120B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1055.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
TMEM120B MUTATED 1 1 0 0 1
TMEM120B WILD-TYPE 177 119 66 92 111
'TMEM120B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1056.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
TMEM120B MUTATED 2 1 0
TMEM120B WILD-TYPE 277 180 108
'LILRA6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S1057.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
LILRA6 MUTATED 0 0 0 1 1 2 0 0
LILRA6 WILD-TYPE 21 38 114 96 107 71 19 39
'LILRA6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S1058.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
LILRA6 MUTATED 0 0 2 1 1
LILRA6 WILD-TYPE 96 152 114 88 55
'LILRA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S1059.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
LILRA6 MUTATED 2 2 1 1 0
LILRA6 WILD-TYPE 233 364 81 237 41
'LILRA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S1060.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
LILRA6 MUTATED 1 3 0
LILRA6 WILD-TYPE 145 126 118
'LILRA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S1061.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
LILRA6 MUTATED 1 0 1 2 0
LILRA6 WILD-TYPE 58 109 89 102 31
'LILRA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1062.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
LILRA6 MUTATED 4 1 1
LILRA6 WILD-TYPE 488 272 207
'LILRA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S1063.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
LILRA6 MUTATED 1 2 1 1 1 0
LILRA6 WILD-TYPE 199 150 270 129 167 52
'LILRA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1064.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
LILRA6 MUTATED 1 1 3
LILRA6 WILD-TYPE 296 204 452
'LILRA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S1065.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
LILRA6 MUTATED 2 0 2 0 0 1
LILRA6 WILD-TYPE 221 142 271 122 77 119
'MLH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S1066.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MLH1 MUTATED 0 0 1 0 2 0 0 0
MLH1 WILD-TYPE 21 38 113 97 106 73 19 39
'MLH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1067.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MLH1 MUTATED 1 2 0 0 0
MLH1 WILD-TYPE 95 150 116 89 56
'MLH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1068.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
MLH1 MUTATED 1 3 0 2 0
MLH1 WILD-TYPE 234 363 82 236 41
'MLH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S1069.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MLH1 MUTATED 1 1 1 1 0
MLH1 WILD-TYPE 115 180 156 82 111
'MLH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S1070.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
MLH1 MUTATED 5 1 0
MLH1 WILD-TYPE 487 272 208
'MLH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S1071.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
MLH1 MUTATED 1 2 1 1 1 0
MLH1 WILD-TYPE 199 150 270 129 167 52
'MLH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S1072.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
MLH1 MUTATED 2 0 4
MLH1 WILD-TYPE 295 205 451
'MLH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S1073.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
MLH1 MUTATED 3 0 1 1 0 1
MLH1 WILD-TYPE 220 142 272 121 77 119
'MLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S1074.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
MLH1 MUTATED 2 1 0 0 1
MLH1 WILD-TYPE 176 119 66 92 111
'MLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1075.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
MLH1 MUTATED 3 1 0
MLH1 WILD-TYPE 276 180 108
'NUP93 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 1

Table S1076.  Gene #98: 'NUP93 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
NUP93 MUTATED 0 0 0 3 1
NUP93 WILD-TYPE 235 366 82 235 40

Figure S142.  Get High-res Image Gene #98: 'NUP93 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NUP93 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1077.  Gene #98: 'NUP93 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
NUP93 MUTATED 2 0 1 0 1
NUP93 WILD-TYPE 114 181 156 83 110
'NUP93 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S1078.  Gene #98: 'NUP93 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
NUP93 MUTATED 1 3 0
NUP93 WILD-TYPE 491 270 208
'NUP93 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S1079.  Gene #98: 'NUP93 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
NUP93 MUTATED 0 1 2 0 1 0
NUP93 WILD-TYPE 200 151 269 130 167 52
'NUP93 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1080.  Gene #98: 'NUP93 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
NUP93 MUTATED 1 0 2
NUP93 WILD-TYPE 296 205 453
'NUP93 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S1081.  Gene #98: 'NUP93 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
NUP93 MUTATED 2 0 1 0 0 0
NUP93 WILD-TYPE 221 142 272 122 77 120
'ALDH1L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S1082.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ALDH1L1 MUTATED 0 1 2 1 0 1 0 1
ALDH1L1 WILD-TYPE 21 37 112 96 108 72 19 38
'ALDH1L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S1083.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ALDH1L1 MUTATED 2 2 1 1 0
ALDH1L1 WILD-TYPE 94 150 115 88 56
'ALDH1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S1084.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ALDH1L1 MUTATED 4 1 0 4 0
ALDH1L1 WILD-TYPE 231 365 82 234 41
'ALDH1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S1085.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ALDH1L1 MUTATED 2 1 3 1 0
ALDH1L1 WILD-TYPE 114 180 154 82 111
'ALDH1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S1086.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ALDH1L1 MUTATED 1 1 2
ALDH1L1 WILD-TYPE 145 128 116
'ALDH1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S1087.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ALDH1L1 MUTATED 0 3 0 1 0
ALDH1L1 WILD-TYPE 59 106 90 103 31
'ALDH1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1088.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ALDH1L1 MUTATED 3 4 2
ALDH1L1 WILD-TYPE 489 269 206
'ALDH1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S1089.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ALDH1L1 MUTATED 1 3 2 0 2 1
ALDH1L1 WILD-TYPE 199 149 269 130 166 51
'ALDH1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S1090.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ALDH1L1 MUTATED 4 0 5
ALDH1L1 WILD-TYPE 293 205 450
'ALDH1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S1091.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ALDH1L1 MUTATED 3 2 3 0 0 1
ALDH1L1 WILD-TYPE 220 140 270 122 77 119
'ALDH1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S1092.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ALDH1L1 MUTATED 2 1 0 1 0
ALDH1L1 WILD-TYPE 176 119 66 91 112
'ALDH1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1093.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ALDH1L1 MUTATED 3 1 0
ALDH1L1 WILD-TYPE 276 180 108
'LRIG2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S1094.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
LRIG2 MUTATED 0 0 3 1 0 0 0 0
LRIG2 WILD-TYPE 21 38 111 96 108 73 19 39
'LRIG2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0321 (Fisher's exact test), Q value = 1

Table S1095.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
LRIG2 MUTATED 3 0 0 1 0
LRIG2 WILD-TYPE 93 152 116 88 56

Figure S143.  Get High-res Image Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LRIG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S1096.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
LRIG2 MUTATED 3 1 0 2 1
LRIG2 WILD-TYPE 232 365 82 236 40
'LRIG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S1097.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
LRIG2 MUTATED 2 1 1 0 0
LRIG2 WILD-TYPE 114 180 156 83 111
'LRIG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S1098.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
LRIG2 MUTATED 1 3 0
LRIG2 WILD-TYPE 145 126 118
'LRIG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S1099.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
LRIG2 MUTATED 0 0 1 3 0
LRIG2 WILD-TYPE 59 109 89 101 31
'LRIG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S1100.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
LRIG2 MUTATED 4 3 0
LRIG2 WILD-TYPE 488 270 208
'LRIG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S1101.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
LRIG2 MUTATED 3 1 1 0 1 1
LRIG2 WILD-TYPE 197 151 270 130 167 51
'LRIG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S1102.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
LRIG2 MUTATED 4 1 2
LRIG2 WILD-TYPE 293 204 453
'LRIG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1103.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
LRIG2 MUTATED 2 1 2 1 0 1
LRIG2 WILD-TYPE 221 141 271 121 77 119
'LRIG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S1104.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
LRIG2 MUTATED 2 1 0 0 0
LRIG2 WILD-TYPE 176 119 66 92 112
'LRIG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1105.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
LRIG2 MUTATED 2 1 0
LRIG2 WILD-TYPE 277 180 108
'CCDC78 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1106.  Gene #101: 'CCDC78 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
CCDC78 MUTATED 3 1 0 1 0
CCDC78 WILD-TYPE 232 365 82 237 41
'CCDC78 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S1107.  Gene #101: 'CCDC78 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CCDC78 MUTATED 0 2 2 0 0
CCDC78 WILD-TYPE 116 179 155 83 111
'CCDC78 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S1108.  Gene #101: 'CCDC78 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
CCDC78 MUTATED 2 2 1
CCDC78 WILD-TYPE 490 271 207
'CCDC78 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1109.  Gene #101: 'CCDC78 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
CCDC78 MUTATED 1 1 1 1 0 1
CCDC78 WILD-TYPE 199 151 270 129 168 51
'CCDC78 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1110.  Gene #101: 'CCDC78 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
CCDC78 MUTATED 1 1 3
CCDC78 WILD-TYPE 296 204 452
'CCDC78 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1111.  Gene #101: 'CCDC78 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
CCDC78 MUTATED 1 3 1 0 0 0
CCDC78 WILD-TYPE 222 139 272 122 77 120
'CCDC78 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S1112.  Gene #101: 'CCDC78 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
CCDC78 MUTATED 3 1 0 0 1
CCDC78 WILD-TYPE 175 119 66 92 111
'CCDC78 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S1113.  Gene #101: 'CCDC78 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
CCDC78 MUTATED 4 1 0
CCDC78 WILD-TYPE 275 180 108
'GAL3ST1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S1114.  Gene #102: 'GAL3ST1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
GAL3ST1 MUTATED 2 1 0 2 0
GAL3ST1 WILD-TYPE 233 365 82 236 41
'GAL3ST1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1115.  Gene #102: 'GAL3ST1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
GAL3ST1 MUTATED 1 0 1 0 1
GAL3ST1 WILD-TYPE 115 181 156 83 110
'GAL3ST1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1116.  Gene #102: 'GAL3ST1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
GAL3ST1 MUTATED 3 1 1
GAL3ST1 WILD-TYPE 489 272 207
'GAL3ST1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1117.  Gene #102: 'GAL3ST1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
GAL3ST1 MUTATED 1 1 2 0 1 0
GAL3ST1 WILD-TYPE 199 151 269 130 167 52
'GAL3ST1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 1

Table S1118.  Gene #102: 'GAL3ST1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
GAL3ST1 MUTATED 2 3 0
GAL3ST1 WILD-TYPE 295 202 455

Figure S144.  Get High-res Image Gene #102: 'GAL3ST1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GAL3ST1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S1119.  Gene #102: 'GAL3ST1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
GAL3ST1 MUTATED 1 0 3 0 0 1
GAL3ST1 WILD-TYPE 222 142 270 122 77 119
'GAL3ST1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S1120.  Gene #102: 'GAL3ST1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
GAL3ST1 MUTATED 0 1 0 0 2
GAL3ST1 WILD-TYPE 178 119 66 92 110
'GAL3ST1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1121.  Gene #102: 'GAL3ST1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
GAL3ST1 MUTATED 1 2 0
GAL3ST1 WILD-TYPE 278 179 108
'FAM20C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S1122.  Gene #103: 'FAM20C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
FAM20C MUTATED 1 1 1 1 0
FAM20C WILD-TYPE 234 365 81 237 41
'FAM20C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S1123.  Gene #103: 'FAM20C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
FAM20C MUTATED 1 2 1
FAM20C WILD-TYPE 491 271 207
'FAM20C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S1124.  Gene #103: 'FAM20C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
FAM20C MUTATED 1 0 1 0 1 1
FAM20C WILD-TYPE 199 152 270 130 167 51
'FAM20C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S1125.  Gene #103: 'FAM20C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
FAM20C MUTATED 3 0 1
FAM20C WILD-TYPE 294 205 454
'FAM20C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0998 (Fisher's exact test), Q value = 1

Table S1126.  Gene #103: 'FAM20C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
FAM20C MUTATED 0 2 0 1 0 1
FAM20C WILD-TYPE 223 140 273 121 77 119
'FAM20C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S1127.  Gene #103: 'FAM20C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
FAM20C MUTATED 0 1 0 1 1
FAM20C WILD-TYPE 178 119 66 91 111
'FAM20C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S1128.  Gene #103: 'FAM20C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
FAM20C MUTATED 1 1 1
FAM20C WILD-TYPE 278 180 107
'RCC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S1129.  Gene #104: 'RCC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RCC1 MUTATED 0 0 1 2 0 0 0 0
RCC1 WILD-TYPE 21 38 113 95 108 73 19 39
'RCC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S1130.  Gene #104: 'RCC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RCC1 MUTATED 1 0 0 2 0
RCC1 WILD-TYPE 95 152 116 87 56
'RCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S1131.  Gene #104: 'RCC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
RCC1 MUTATED 0 1 0 1 1
RCC1 WILD-TYPE 235 365 82 237 40
'RCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S1132.  Gene #104: 'RCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
RCC1 MUTATED 1 2 0
RCC1 WILD-TYPE 491 271 208
'RCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1133.  Gene #104: 'RCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
RCC1 MUTATED 0 0 1 0 2 0
RCC1 WILD-TYPE 200 152 270 130 166 52
'RCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1134.  Gene #104: 'RCC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
RCC1 MUTATED 1 0 2
RCC1 WILD-TYPE 296 205 453
'RCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1135.  Gene #104: 'RCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
RCC1 MUTATED 1 1 1 0 0 0
RCC1 WILD-TYPE 222 141 272 122 77 120
'SPTAN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S1136.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SPTAN1 MUTATED 0 0 0 2 2 1 0 0
SPTAN1 WILD-TYPE 21 38 114 95 106 72 19 39
'SPTAN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S1137.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SPTAN1 MUTATED 0 2 1 2 0
SPTAN1 WILD-TYPE 96 150 115 87 56
'SPTAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1138.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
SPTAN1 MUTATED 2 2 1 4 1
SPTAN1 WILD-TYPE 233 364 81 234 40
'SPTAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S1139.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
SPTAN1 MUTATED 2 1 3 1 2
SPTAN1 WILD-TYPE 114 180 154 82 109
'SPTAN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S1140.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
SPTAN1 MUTATED 3 0 0
SPTAN1 WILD-TYPE 143 129 118
'SPTAN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0494 (Fisher's exact test), Q value = 1

Table S1141.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
SPTAN1 MUTATED 0 0 2 0 1
SPTAN1 WILD-TYPE 59 109 88 104 30

Figure S145.  Get High-res Image Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'SPTAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 1

Table S1142.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
SPTAN1 MUTATED 2 7 1
SPTAN1 WILD-TYPE 490 266 207

Figure S146.  Get High-res Image Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SPTAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S1143.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
SPTAN1 MUTATED 1 2 2 0 4 1
SPTAN1 WILD-TYPE 199 150 269 130 164 51
'SPTAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S1144.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
SPTAN1 MUTATED 5 0 6
SPTAN1 WILD-TYPE 292 205 449
'SPTAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S1145.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
SPTAN1 MUTATED 4 2 1 0 1 3
SPTAN1 WILD-TYPE 219 140 272 122 76 117
'SPTAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S1146.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
SPTAN1 MUTATED 2 4 1 0 1
SPTAN1 WILD-TYPE 176 116 65 92 111
'SPTAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S1147.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
SPTAN1 MUTATED 7 1 0
SPTAN1 WILD-TYPE 272 180 108
'CHD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S1148.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CHD4 MUTATED 0 2 0 2 2 1 1 1
CHD4 WILD-TYPE 21 36 114 95 106 72 18 38
'CHD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S1149.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CHD4 MUTATED 0 5 2 2 0
CHD4 WILD-TYPE 96 147 114 87 56
'CHD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S1150.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
CHD4 MUTATED 3 11 1 4 0
CHD4 WILD-TYPE 232 355 81 234 41
'CHD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0834 (Fisher's exact test), Q value = 1

Table S1151.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CHD4 MUTATED 1 1 5 4 4
CHD4 WILD-TYPE 115 180 152 79 107
'CHD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S1152.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CHD4 MUTATED 3 0 3
CHD4 WILD-TYPE 143 129 115
'CHD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S1153.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CHD4 MUTATED 0 2 2 1 1
CHD4 WILD-TYPE 59 107 88 103 30
'CHD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S1154.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
CHD4 MUTATED 6 6 7
CHD4 WILD-TYPE 486 267 201
'CHD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S1155.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
CHD4 MUTATED 1 5 7 3 3 0
CHD4 WILD-TYPE 199 147 264 127 165 52
'CHD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S1156.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
CHD4 MUTATED 4 7 8
CHD4 WILD-TYPE 293 198 447
'CHD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 1

Table S1157.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
CHD4 MUTATED 6 0 9 0 1 3
CHD4 WILD-TYPE 217 142 264 122 76 117
'CHD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S1158.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
CHD4 MUTATED 3 1 2 2 3
CHD4 WILD-TYPE 175 119 64 90 109
'CHD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S1159.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
CHD4 MUTATED 3 5 3
CHD4 WILD-TYPE 276 176 105
'ZFP36L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S1160.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ZFP36L2 MUTATED 0 0 1 1 0 1 1 0
ZFP36L2 WILD-TYPE 21 38 113 96 108 72 18 39
'ZFP36L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1161.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ZFP36L2 MUTATED 1 1 1 1 0
ZFP36L2 WILD-TYPE 95 151 115 88 56
'ZFP36L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0755 (Fisher's exact test), Q value = 1

Table S1162.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ZFP36L2 MUTATED 1 2 1 1 2
ZFP36L2 WILD-TYPE 234 364 81 237 39
'ZFP36L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1163.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ZFP36L2 MUTATED 1 1 3 0 0
ZFP36L2 WILD-TYPE 115 180 154 83 111
'ZFP36L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1164.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ZFP36L2 MUTATED 1 1 1
ZFP36L2 WILD-TYPE 145 128 117
'ZFP36L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1165.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ZFP36L2 MUTATED 0 1 1 1 0
ZFP36L2 WILD-TYPE 59 108 89 103 31
'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S1166.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ZFP36L2 MUTATED 5 2 0
ZFP36L2 WILD-TYPE 487 271 208
'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S1167.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ZFP36L2 MUTATED 2 3 0 1 1 0
ZFP36L2 WILD-TYPE 198 149 271 129 167 52
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S1168.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ZFP36L2 MUTATED 1 2 4
ZFP36L2 WILD-TYPE 296 203 451
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S1169.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ZFP36L2 MUTATED 2 0 2 1 1 1
ZFP36L2 WILD-TYPE 221 142 271 121 76 119
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S1170.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ZFP36L2 MUTATED 1 1 0 0 3
ZFP36L2 WILD-TYPE 177 119 66 92 109
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S1171.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ZFP36L2 MUTATED 2 2 1
ZFP36L2 WILD-TYPE 277 179 107
'STAG2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S1172.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
STAG2 MUTATED 0 0 0 1 3 2 1 0
STAG2 WILD-TYPE 21 38 114 96 105 71 18 39
'STAG2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S1173.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
STAG2 MUTATED 0 1 3 1 2
STAG2 WILD-TYPE 96 151 113 88 54
'STAG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S1174.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
STAG2 MUTATED 2 5 0 4 2
STAG2 WILD-TYPE 233 361 82 234 39
'STAG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S1175.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
STAG2 MUTATED 2 2 5 0 0
STAG2 WILD-TYPE 114 179 152 83 111
'STAG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S1176.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
STAG2 MUTATED 3 2 1
STAG2 WILD-TYPE 143 127 117
'STAG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S1177.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
STAG2 MUTATED 2 1 2 0 1
STAG2 WILD-TYPE 57 108 88 104 30
'STAG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S1178.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
STAG2 MUTATED 6 6 1
STAG2 WILD-TYPE 486 267 207
'STAG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S1179.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
STAG2 MUTATED 2 3 3 2 2 1
STAG2 WILD-TYPE 198 149 268 128 166 51
'STAG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S1180.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
STAG2 MUTATED 6 1 6
STAG2 WILD-TYPE 291 204 449
'STAG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S1181.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
STAG2 MUTATED 4 4 3 0 0 2
STAG2 WILD-TYPE 219 138 270 122 77 118
'STAG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S1182.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
STAG2 MUTATED 3 1 0 1 2
STAG2 WILD-TYPE 175 119 66 91 110
'STAG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1183.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
STAG2 MUTATED 5 1 1
STAG2 WILD-TYPE 274 180 107
'HIST1H2BC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S1184.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
HIST1H2BC MUTATED 0 0 0 1 1 1 1 0
HIST1H2BC WILD-TYPE 21 38 114 96 107 72 18 39
'HIST1H2BC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0459 (Fisher's exact test), Q value = 1

Table S1185.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
HIST1H2BC MUTATED 0 0 3 0 1
HIST1H2BC WILD-TYPE 96 152 113 89 55

Figure S147.  Get High-res Image Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HIST1H2BC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1186.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
HIST1H2BC MUTATED 1 2 1 2 0
HIST1H2BC WILD-TYPE 234 364 81 236 41
'HIST1H2BC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S1187.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
HIST1H2BC MUTATED 0 0 2 0 1
HIST1H2BC WILD-TYPE 116 181 155 83 110
'HIST1H2BC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S1188.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
HIST1H2BC MUTATED 3 1 0
HIST1H2BC WILD-TYPE 143 128 118
'HIST1H2BC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S1189.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
HIST1H2BC MUTATED 0 0 1 2 1
HIST1H2BC WILD-TYPE 59 109 89 102 30
'HIST1H2BC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.074 (Fisher's exact test), Q value = 1

Table S1190.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
HIST1H2BC MUTATED 1 4 1
HIST1H2BC WILD-TYPE 491 269 207
'HIST1H2BC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S1191.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
HIST1H2BC MUTATED 0 2 2 1 1 0
HIST1H2BC WILD-TYPE 200 150 269 129 167 52
'HIST1H2BC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S1192.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
HIST1H2BC MUTATED 1 2 3
HIST1H2BC WILD-TYPE 296 203 452
'HIST1H2BC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S1193.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
HIST1H2BC MUTATED 3 1 2 0 0 0
HIST1H2BC WILD-TYPE 220 141 271 122 77 120
'HIST1H2BC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S1194.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
HIST1H2BC MUTATED 2 1 0 0 1
HIST1H2BC WILD-TYPE 176 119 66 92 111
'HIST1H2BC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1195.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
HIST1H2BC MUTATED 3 1 0
HIST1H2BC WILD-TYPE 276 180 108
'BPHL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S1196.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
BPHL MUTATED 0 0 1 0 2 1 1 0
BPHL WILD-TYPE 21 38 113 97 106 72 18 39
'BPHL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S1197.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
BPHL MUTATED 0 3 1 0 1
BPHL WILD-TYPE 96 149 115 89 55
'BPHL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S1198.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
BPHL MUTATED 2 1 1 1 0
BPHL WILD-TYPE 233 365 81 237 41
'BPHL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S1199.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
BPHL MUTATED 1 1 2
BPHL WILD-TYPE 145 128 116
'BPHL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S1200.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
BPHL MUTATED 1 1 0 1 1
BPHL WILD-TYPE 58 108 90 103 30
'BPHL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S1201.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
BPHL MUTATED 3 2 0
BPHL WILD-TYPE 489 271 208
'BPHL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S1202.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
BPHL MUTATED 1 0 2 1 0 1
BPHL WILD-TYPE 199 152 269 129 168 51
'BPHL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S1203.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
BPHL MUTATED 2 0 3
BPHL WILD-TYPE 295 205 452
'BPHL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S1204.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
BPHL MUTATED 2 1 0 1 1 0
BPHL WILD-TYPE 221 141 273 121 76 120
'ATP2A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1205.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ATP2A1 MUTATED 0 0 1 1 1 0 0 0
ATP2A1 WILD-TYPE 21 38 113 96 107 73 19 39
'ATP2A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1206.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ATP2A1 MUTATED 0 2 0 1 0
ATP2A1 WILD-TYPE 96 150 116 88 56
'ATP2A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S1207.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ATP2A1 MUTATED 3 3 1 3 1
ATP2A1 WILD-TYPE 232 363 81 235 40
'ATP2A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1208.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ATP2A1 MUTATED 2 3 3 1 0
ATP2A1 WILD-TYPE 114 178 154 82 111
'ATP2A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1209.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ATP2A1 MUTATED 5 3 2
ATP2A1 WILD-TYPE 487 270 206
'ATP2A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1210.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ATP2A1 MUTATED 2 2 4 0 2 0
ATP2A1 WILD-TYPE 198 150 267 130 166 52
'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S1211.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ATP2A1 MUTATED 3 3 5
ATP2A1 WILD-TYPE 294 202 450
'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S1212.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ATP2A1 MUTATED 4 2 3 0 1 1
ATP2A1 WILD-TYPE 219 140 270 122 76 119
'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S1213.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ATP2A1 MUTATED 3 1 1 1 1
ATP2A1 WILD-TYPE 175 119 65 91 111
'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S1214.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ATP2A1 MUTATED 5 1 1
ATP2A1 WILD-TYPE 274 180 107
'LRRC37A3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 1

Table S1215.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
LRRC37A3 MUTATED 0 2 0 0 0 1 0 1
LRRC37A3 WILD-TYPE 21 36 114 97 108 72 19 38

Figure S148.  Get High-res Image Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LRRC37A3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S1216.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
LRRC37A3 MUTATED 0 3 1 0 0
LRRC37A3 WILD-TYPE 96 149 115 89 56
'LRRC37A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S1217.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
LRRC37A3 MUTATED 4 3 0 3 0
LRRC37A3 WILD-TYPE 231 363 82 235 41
'LRRC37A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S1218.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
LRRC37A3 MUTATED 2 2 1 1 2
LRRC37A3 WILD-TYPE 114 179 156 82 109
'LRRC37A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1219.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
LRRC37A3 MUTATED 1 0 2
LRRC37A3 WILD-TYPE 145 129 116
'LRRC37A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S1220.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
LRRC37A3 MUTATED 0 1 0 2 0
LRRC37A3 WILD-TYPE 59 108 90 102 31
'LRRC37A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1221.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
LRRC37A3 MUTATED 5 3 2
LRRC37A3 WILD-TYPE 487 270 206
'LRRC37A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S1222.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
LRRC37A3 MUTATED 1 2 3 1 3 0
LRRC37A3 WILD-TYPE 199 150 268 129 165 52
'LRRC37A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S1223.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
LRRC37A3 MUTATED 5 2 3
LRRC37A3 WILD-TYPE 292 203 452
'LRRC37A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S1224.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
LRRC37A3 MUTATED 2 1 3 1 0 3
LRRC37A3 WILD-TYPE 221 141 270 121 77 117
'LRRC37A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S1225.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
LRRC37A3 MUTATED 1 3 0 0 2
LRRC37A3 WILD-TYPE 177 117 66 92 110
'LRRC37A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S1226.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
LRRC37A3 MUTATED 4 2 0
LRRC37A3 WILD-TYPE 275 179 108
'EPDR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S1227.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
EPDR1 MUTATED 0 1 1 0 0 2 0 0
EPDR1 WILD-TYPE 21 37 113 97 108 71 19 39
'EPDR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S1228.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
EPDR1 MUTATED 1 1 2 0 0
EPDR1 WILD-TYPE 95 151 114 89 56
'EPDR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S1229.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
EPDR1 MUTATED 2 1 0 2 0
EPDR1 WILD-TYPE 233 365 82 236 41
'EPDR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S1230.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
EPDR1 MUTATED 2 2 0
EPDR1 WILD-TYPE 144 127 118
'EPDR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S1231.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
EPDR1 MUTATED 1 0 0 2 1
EPDR1 WILD-TYPE 58 109 90 102 30
'EPDR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S1232.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
EPDR1 MUTATED 2 2 1
EPDR1 WILD-TYPE 490 271 207
'EPDR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S1233.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
EPDR1 MUTATED 1 1 1 1 0 1
EPDR1 WILD-TYPE 199 151 270 129 168 51
'EPDR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S1234.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
EPDR1 MUTATED 2 1 1
EPDR1 WILD-TYPE 295 204 454
'EPDR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1235.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
EPDR1 MUTATED 1 1 2 0 0 0
EPDR1 WILD-TYPE 222 141 271 122 77 120
'EXOC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 1

Table S1236.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
EXOC4 MUTATED 0 2 0 0 0 1 1 0
EXOC4 WILD-TYPE 21 36 114 97 108 72 18 39

Figure S149.  Get High-res Image Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EXOC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S1237.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
EXOC4 MUTATED 0 2 2 0 0
EXOC4 WILD-TYPE 96 150 114 89 56
'EXOC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S1238.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
EXOC4 MUTATED 4 1 0 3 0
EXOC4 WILD-TYPE 231 365 82 235 41
'EXOC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 1

Table S1239.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
EXOC4 MUTATED 0 0 4 1 2
EXOC4 WILD-TYPE 116 181 153 82 109
'EXOC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 1

Table S1240.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
EXOC4 MUTATED 1 5 2
EXOC4 WILD-TYPE 491 268 206

Figure S150.  Get High-res Image Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EXOC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0288 (Fisher's exact test), Q value = 1

Table S1241.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
EXOC4 MUTATED 0 2 4 0 0 2
EXOC4 WILD-TYPE 200 150 267 130 168 50

Figure S151.  Get High-res Image Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EXOC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S1242.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
EXOC4 MUTATED 4 2 2
EXOC4 WILD-TYPE 293 203 453
'EXOC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1243.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
EXOC4 MUTATED 3 2 3 0 0 0
EXOC4 WILD-TYPE 220 140 270 122 77 120
'EXOC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S1244.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
EXOC4 MUTATED 2 0 0 1 2
EXOC4 WILD-TYPE 176 120 66 91 110
'EXOC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S1245.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
EXOC4 MUTATED 2 3 0
EXOC4 WILD-TYPE 277 178 108
'C11ORF49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S1246.  Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
C11ORF49 MUTATED 0 2 1 1 1
C11ORF49 WILD-TYPE 235 364 81 237 40
'C11ORF49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S1247.  Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
C11ORF49 MUTATED 2 0 1 0 1
C11ORF49 WILD-TYPE 114 181 156 83 110
'C11ORF49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0021 (Fisher's exact test), Q value = 1

Table S1248.  Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
C11ORF49 MUTATED 0 5 0
C11ORF49 WILD-TYPE 492 268 208

Figure S152.  Get High-res Image Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C11ORF49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0267 (Fisher's exact test), Q value = 1

Table S1249.  Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
C11ORF49 MUTATED 0 1 0 0 3 1
C11ORF49 WILD-TYPE 200 151 271 130 165 51

Figure S153.  Get High-res Image Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C11ORF49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 1

Table S1250.  Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
C11ORF49 MUTATED 4 0 1
C11ORF49 WILD-TYPE 293 205 454
'C11ORF49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0339 (Fisher's exact test), Q value = 1

Table S1251.  Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
C11ORF49 MUTATED 2 0 0 0 0 3
C11ORF49 WILD-TYPE 221 142 273 122 77 117

Figure S154.  Get High-res Image Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ACTG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S1252.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ACTG1 MUTATED 0 1 0 0 2 0 0 0
ACTG1 WILD-TYPE 21 37 114 97 106 73 19 39
'ACTG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S1253.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ACTG1 MUTATED 0 2 0 0 1
ACTG1 WILD-TYPE 96 150 116 89 55
'ACTG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S1254.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ACTG1 MUTATED 1 3 1 2 0
ACTG1 WILD-TYPE 234 363 81 236 41
'ACTG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 1

Table S1255.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ACTG1 MUTATED 3 0 1 2 0
ACTG1 WILD-TYPE 113 181 156 81 111

Figure S155.  Get High-res Image Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ACTG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1256.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ACTG1 MUTATED 3 3 2
ACTG1 WILD-TYPE 489 270 206
'ACTG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S1257.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ACTG1 MUTATED 3 0 1 1 3 0
ACTG1 WILD-TYPE 197 152 270 129 165 52
'ACTG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S1258.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ACTG1 MUTATED 2 1 5
ACTG1 WILD-TYPE 295 204 450
'ACTG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S1259.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ACTG1 MUTATED 0 1 4 1 0 2
ACTG1 WILD-TYPE 223 141 269 121 77 118
'ACTG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S1260.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ACTG1 MUTATED 0 3 0 1 2
ACTG1 WILD-TYPE 178 117 66 91 110
'ACTG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1261.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ACTG1 MUTATED 3 2 1
ACTG1 WILD-TYPE 276 179 107
'ANXA11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S1262.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ANXA11 MUTATED 0 0 1 0 1 0 0 1
ANXA11 WILD-TYPE 21 38 113 97 107 73 19 38
'ANXA11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S1263.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ANXA11 MUTATED 1 1 0 0 1
ANXA11 WILD-TYPE 95 151 116 89 55
'ANXA11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S1264.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ANXA11 MUTATED 0 1 1 1 0
ANXA11 WILD-TYPE 235 365 81 237 41
'ANXA11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 1

Table S1265.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ANXA11 MUTATED 0 3 0
ANXA11 WILD-TYPE 146 126 118
'ANXA11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S1266.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ANXA11 MUTATED 1 1 0 1 0
ANXA11 WILD-TYPE 58 108 90 103 31
'ANXA11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S1267.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ANXA11 MUTATED 2 0 1
ANXA11 WILD-TYPE 490 273 207
'ANXA11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S1268.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ANXA11 MUTATED 1 0 1 1 0 0
ANXA11 WILD-TYPE 199 152 270 129 168 52
'ANXA11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S1269.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ANXA11 MUTATED 0 0 3
ANXA11 WILD-TYPE 297 205 452
'ANXA11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0042 (Fisher's exact test), Q value = 1

Table S1270.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ANXA11 MUTATED 0 0 0 3 0 0
ANXA11 WILD-TYPE 223 142 273 119 77 120

Figure S156.  Get High-res Image Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PFKP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S1271.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PFKP MUTATED 0 0 3 3 0 0 0 0
PFKP WILD-TYPE 21 38 111 94 108 73 19 39
'PFKP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 1

Table S1272.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PFKP MUTATED 3 0 0 3 0
PFKP WILD-TYPE 93 152 116 86 56

Figure S157.  Get High-res Image Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PFKP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S1273.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
PFKP MUTATED 2 1 0 3 1
PFKP WILD-TYPE 233 365 82 235 40
'PFKP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S1274.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PFKP MUTATED 0 1 2 0 0
PFKP WILD-TYPE 116 180 155 83 111
'PFKP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S1275.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PFKP MUTATED 3 0 2
PFKP WILD-TYPE 143 129 116
'PFKP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S1276.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PFKP MUTATED 0 0 3 2 0
PFKP WILD-TYPE 59 109 87 102 31
'PFKP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S1277.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
PFKP MUTATED 4 3 0
PFKP WILD-TYPE 488 270 208
'PFKP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1278.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
PFKP MUTATED 3 1 0 0 3 0
PFKP WILD-TYPE 197 151 271 130 165 52
'PFKP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 1

Table S1279.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
PFKP MUTATED 5 0 2
PFKP WILD-TYPE 292 205 453
'PFKP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S1280.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
PFKP MUTATED 1 1 2 0 0 3
PFKP WILD-TYPE 222 141 271 122 77 117
'GYLTL1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S1281.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
GYLTL1B MUTATED 1 0 0 1 1 1 0 0
GYLTL1B WILD-TYPE 20 38 114 96 107 72 19 39
'GYLTL1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S1282.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
GYLTL1B MUTATED 0 1 1 1 1
GYLTL1B WILD-TYPE 96 151 115 88 55
'GYLTL1B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1283.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
GYLTL1B MUTATED 1 2 0 1 0
GYLTL1B WILD-TYPE 234 364 82 237 41
'GYLTL1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S1284.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
GYLTL1B MUTATED 1 1 2
GYLTL1B WILD-TYPE 145 128 116
'GYLTL1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S1285.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
GYLTL1B MUTATED 0 2 2 0 0
GYLTL1B WILD-TYPE 59 107 88 104 31
'GYLTL1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S1286.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
GYLTL1B MUTATED 2 2 0
GYLTL1B WILD-TYPE 490 271 208
'GYLTL1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S1287.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
GYLTL1B MUTATED 1 2 0 0 1 0
GYLTL1B WILD-TYPE 199 150 271 130 167 52
'GYLTL1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S1288.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
GYLTL1B MUTATED 2 1 1
GYLTL1B WILD-TYPE 295 204 454
'GYLTL1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S1289.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
GYLTL1B MUTATED 1 1 0 0 1 1
GYLTL1B WILD-TYPE 222 141 273 122 76 119
'ANGPTL6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S1290.  Gene #120: 'ANGPTL6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ANGPTL6 MUTATED 0 2 0 1 0
ANGPTL6 WILD-TYPE 235 364 82 237 41
'ANGPTL6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1291.  Gene #120: 'ANGPTL6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ANGPTL6 MUTATED 1 1 1
ANGPTL6 WILD-TYPE 491 272 207
'ANGPTL6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S1292.  Gene #120: 'ANGPTL6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ANGPTL6 MUTATED 0 0 1 1 1 0
ANGPTL6 WILD-TYPE 200 152 270 129 167 52
'SP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S1293.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SP3 MUTATED 0 0 1 0 2 1 0 0
SP3 WILD-TYPE 21 38 113 97 106 72 19 39
'SP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S1294.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SP3 MUTATED 0 3 1 0 0
SP3 WILD-TYPE 96 149 115 89 56
'SP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S1295.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
SP3 MUTATED 2 3 1 0 0
SP3 WILD-TYPE 233 363 81 238 41
'SP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S1296.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
SP3 MUTATED 0 2 1 0 1
SP3 WILD-TYPE 116 179 156 83 110
'SP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S1297.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
SP3 MUTATED 2 2 3
SP3 WILD-TYPE 490 271 205
'SP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S1298.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
SP3 MUTATED 1 2 2 2 0 0
SP3 WILD-TYPE 199 150 269 128 168 52
'SP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S1299.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
SP3 MUTATED 1 1 5
SP3 WILD-TYPE 296 204 450
'SP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S1300.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
SP3 MUTATED 4 2 1 0 0 0
SP3 WILD-TYPE 219 140 272 122 77 120
'SP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S1301.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
SP3 MUTATED 1 0 1 0 2
SP3 WILD-TYPE 177 120 65 92 110
'SP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1302.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
SP3 MUTATED 2 1 1
SP3 WILD-TYPE 277 180 107
'RUFY1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1303.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RUFY1 MUTATED 1 0 1 0 1 0 0 0
RUFY1 WILD-TYPE 20 38 113 97 107 73 19 39
'RUFY1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S1304.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RUFY1 MUTATED 1 2 0 0 0
RUFY1 WILD-TYPE 95 150 116 89 56
'RUFY1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S1305.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
RUFY1 MUTATED 1 2 1 1 1
RUFY1 WILD-TYPE 234 364 81 237 40
'RUFY1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S1306.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RUFY1 MUTATED 1 0 3 0 0
RUFY1 WILD-TYPE 115 181 154 83 111
'RUFY1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S1307.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
RUFY1 MUTATED 4 2 0
RUFY1 WILD-TYPE 488 271 208
'RUFY1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S1308.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
RUFY1 MUTATED 0 3 2 0 1 0
RUFY1 WILD-TYPE 200 149 269 130 167 52
'RUFY1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1309.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
RUFY1 MUTATED 1 0 5
RUFY1 WILD-TYPE 296 205 450
'RUFY1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0269 (Fisher's exact test), Q value = 1

Table S1310.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
RUFY1 MUTATED 5 0 0 0 0 1
RUFY1 WILD-TYPE 218 142 273 122 77 119

Figure S158.  Get High-res Image Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RUFY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S1311.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
RUFY1 MUTATED 2 1 0 1 0
RUFY1 WILD-TYPE 176 119 66 91 112
'RUFY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S1312.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
RUFY1 MUTATED 3 0 1
RUFY1 WILD-TYPE 276 181 107
'LIFR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S1313.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
LIFR MUTATED 0 0 0 0 2 2 0 1
LIFR WILD-TYPE 21 38 114 97 106 71 19 38
'LIFR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S1314.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
LIFR MUTATED 0 3 2 0 0
LIFR WILD-TYPE 96 149 114 89 56
'LIFR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S1315.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
LIFR MUTATED 0 5 1 2 1
LIFR WILD-TYPE 235 361 81 236 40
'LIFR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S1316.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
LIFR MUTATED 1 0 3 1 2
LIFR WILD-TYPE 115 181 154 82 109
'LIFR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00831 (Fisher's exact test), Q value = 1

Table S1317.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
LIFR MUTATED 0 0 4
LIFR WILD-TYPE 146 129 114

Figure S159.  Get High-res Image Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'LIFR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0727 (Fisher's exact test), Q value = 1

Table S1318.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
LIFR MUTATED 0 4 0 0 0
LIFR WILD-TYPE 59 105 90 104 31
'LIFR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S1319.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
LIFR MUTATED 4 2 3
LIFR WILD-TYPE 488 271 205
'LIFR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S1320.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
LIFR MUTATED 0 3 4 0 1 1
LIFR WILD-TYPE 200 149 267 130 167 51
'LIFR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S1321.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
LIFR MUTATED 1 3 5
LIFR WILD-TYPE 296 202 450
'LIFR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S1322.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
LIFR MUTATED 4 1 3 0 0 1
LIFR WILD-TYPE 219 141 270 122 77 119
'LIFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S1323.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
LIFR MUTATED 1 1 1 0 0
LIFR WILD-TYPE 177 119 65 92 112
'LIFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1324.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
LIFR MUTATED 2 1 0
LIFR WILD-TYPE 277 180 108
'OR6C76 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S1325.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
OR6C76 MUTATED 0 0 0 1 2 0 1 0
OR6C76 WILD-TYPE 21 38 114 96 106 73 18 39
'OR6C76 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S1326.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
OR6C76 MUTATED 0 3 0 1 0
OR6C76 WILD-TYPE 96 149 116 88 56
'OR6C76 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1327.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
OR6C76 MUTATED 1 4 1 0 0
OR6C76 WILD-TYPE 234 362 81 238 41
'OR6C76 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S1328.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
OR6C76 MUTATED 1 1 1 0 2
OR6C76 WILD-TYPE 115 180 156 83 109
'OR6C76 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S1329.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
OR6C76 MUTATED 1 2 0
OR6C76 WILD-TYPE 145 127 118
'OR6C76 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S1330.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
OR6C76 MUTATED 1 1 1 0 0
OR6C76 WILD-TYPE 58 108 89 104 31
'OR6C76 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S1331.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
OR6C76 MUTATED 2 2 3
OR6C76 WILD-TYPE 490 271 205
'OR6C76 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S1332.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
OR6C76 MUTATED 0 1 2 2 1 1
OR6C76 WILD-TYPE 200 151 269 128 167 51
'OR6C76 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0827 (Fisher's exact test), Q value = 1

Table S1333.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
OR6C76 MUTATED 1 4 2
OR6C76 WILD-TYPE 296 201 453
'OR6C76 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S1334.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
OR6C76 MUTATED 0 2 3 1 0 1
OR6C76 WILD-TYPE 223 140 270 121 77 119
'OR6C76 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S1335.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
OR6C76 MUTATED 1 0 0 0 3
OR6C76 WILD-TYPE 177 120 66 92 109
'OR6C76 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S1336.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
OR6C76 MUTATED 1 3 0
OR6C76 WILD-TYPE 278 178 108
'HCFC2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 1

Table S1337.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
HCFC2 MUTATED 1 0 1 0 0 0 1 1
HCFC2 WILD-TYPE 20 38 113 97 108 73 18 38

Figure S160.  Get High-res Image Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HCFC2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S1338.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
HCFC2 MUTATED 0 3 1 0 0
HCFC2 WILD-TYPE 96 149 115 89 56
'HCFC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S1339.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
HCFC2 MUTATED 1 4 1 2 2
HCFC2 WILD-TYPE 234 362 81 236 39
'HCFC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S1340.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
HCFC2 MUTATED 2 2 3 0 1
HCFC2 WILD-TYPE 114 179 154 83 110
'HCFC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 1

Table S1341.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
HCFC2 MUTATED 1 5 4
HCFC2 WILD-TYPE 491 268 204

Figure S161.  Get High-res Image Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HCFC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S1342.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
HCFC2 MUTATED 1 3 4 0 1 1
HCFC2 WILD-TYPE 199 149 267 130 167 51
'HCFC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1343.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
HCFC2 MUTATED 3 3 4
HCFC2 WILD-TYPE 294 202 451
'HCFC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1344.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
HCFC2 MUTATED 3 1 3 1 1 1
HCFC2 WILD-TYPE 220 141 270 121 76 119
'HCFC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S1345.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
HCFC2 MUTATED 4 1 0 0 2
HCFC2 WILD-TYPE 174 119 66 92 110
'HCFC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S1346.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
HCFC2 MUTATED 5 2 0
HCFC2 WILD-TYPE 274 179 108
'ACOT2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S1347.  Gene #126: 'ACOT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ACOT2 MUTATED 0 2 0 1 1 0 0 0
ACOT2 WILD-TYPE 21 36 114 96 107 73 19 39
'ACOT2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1348.  Gene #126: 'ACOT2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ACOT2 MUTATED 0 3 0 1 0
ACOT2 WILD-TYPE 96 149 116 88 56
'ACOT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S1349.  Gene #126: 'ACOT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ACOT2 MUTATED 3 2 0 0 0
ACOT2 WILD-TYPE 232 364 82 238 41
'ACOT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S1350.  Gene #126: 'ACOT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ACOT2 MUTATED 0 0 1 2 1
ACOT2 WILD-TYPE 116 181 156 81 110
'ACOT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S1351.  Gene #126: 'ACOT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ACOT2 MUTATED 2 1 2
ACOT2 WILD-TYPE 490 272 206
'ACOT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S1352.  Gene #126: 'ACOT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ACOT2 MUTATED 1 0 2 1 1 0
ACOT2 WILD-TYPE 199 152 269 129 167 52
'ACOT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1353.  Gene #126: 'ACOT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ACOT2 MUTATED 1 1 3
ACOT2 WILD-TYPE 296 204 452
'ACOT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1354.  Gene #126: 'ACOT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ACOT2 MUTATED 0 1 2 2 0 0
ACOT2 WILD-TYPE 223 141 271 120 77 120
'KIAA0430 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S1355.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
KIAA0430 MUTATED 0 1 3 1 1 1 1 0
KIAA0430 WILD-TYPE 21 37 111 96 107 72 18 39
'KIAA0430 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S1356.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
KIAA0430 MUTATED 3 2 2 1 0
KIAA0430 WILD-TYPE 93 150 114 88 56
'KIAA0430 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S1357.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
KIAA0430 MUTATED 6 3 3 3 0
KIAA0430 WILD-TYPE 229 363 79 235 41
'KIAA0430 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S1358.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
KIAA0430 MUTATED 2 1 2 4 1
KIAA0430 WILD-TYPE 114 180 155 79 110
'KIAA0430 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S1359.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
KIAA0430 MUTATED 3 0 1
KIAA0430 WILD-TYPE 143 129 117
'KIAA0430 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S1360.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
KIAA0430 MUTATED 0 0 1 3 0
KIAA0430 WILD-TYPE 59 109 89 101 31
'KIAA0430 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S1361.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
KIAA0430 MUTATED 8 5 2
KIAA0430 WILD-TYPE 484 268 206
'KIAA0430 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S1362.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
KIAA0430 MUTATED 0 4 5 3 3 0
KIAA0430 WILD-TYPE 200 148 266 127 165 52
'KIAA0430 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S1363.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
KIAA0430 MUTATED 5 1 9
KIAA0430 WILD-TYPE 292 204 446
'KIAA0430 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S1364.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
KIAA0430 MUTATED 6 2 3 0 2 2
KIAA0430 WILD-TYPE 217 140 270 122 75 118
'KIAA0430 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S1365.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
KIAA0430 MUTATED 1 3 2 2 0
KIAA0430 WILD-TYPE 177 117 64 90 112
'KIAA0430 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S1366.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
KIAA0430 MUTATED 5 1 2
KIAA0430 WILD-TYPE 274 180 106
'GTF2IRD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S1367.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
GTF2IRD2 MUTATED 0 1 1 1 1 1 0 2
GTF2IRD2 WILD-TYPE 21 37 113 96 107 72 19 37
'GTF2IRD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S1368.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
GTF2IRD2 MUTATED 1 3 1 1 1
GTF2IRD2 WILD-TYPE 95 149 115 88 55
'GTF2IRD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.08 (Fisher's exact test), Q value = 1

Table S1369.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
GTF2IRD2 MUTATED 2 1 3 2 0
GTF2IRD2 WILD-TYPE 233 365 79 236 41
'GTF2IRD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S1370.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
GTF2IRD2 MUTATED 1 1 0 1 0
GTF2IRD2 WILD-TYPE 115 180 157 82 111
'GTF2IRD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1371.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
GTF2IRD2 MUTATED 3 2 0
GTF2IRD2 WILD-TYPE 143 127 118
'GTF2IRD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S1372.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
GTF2IRD2 MUTATED 1 1 1 2 0
GTF2IRD2 WILD-TYPE 58 108 89 102 31
'GTF2IRD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S1373.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
GTF2IRD2 MUTATED 3 2 3
GTF2IRD2 WILD-TYPE 489 271 205
'GTF2IRD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S1374.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
GTF2IRD2 MUTATED 0 2 3 1 2 0
GTF2IRD2 WILD-TYPE 200 150 268 129 166 52
'GTF2IRD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S1375.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
GTF2IRD2 MUTATED 3 1 3
GTF2IRD2 WILD-TYPE 294 204 452
'GTF2IRD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S1376.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
GTF2IRD2 MUTATED 0 0 2 2 1 2
GTF2IRD2 WILD-TYPE 223 142 271 120 76 118
'GTF2IRD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S1377.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
GTF2IRD2 MUTATED 0 1 0 2 0
GTF2IRD2 WILD-TYPE 178 119 66 90 112
'GTF2IRD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S1378.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
GTF2IRD2 MUTATED 2 0 1
GTF2IRD2 WILD-TYPE 277 181 107
'NPAS4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1379.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
NPAS4 MUTATED 0 0 4 1 1 0 0 0
NPAS4 WILD-TYPE 21 38 110 96 107 73 19 39
'NPAS4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S1380.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
NPAS4 MUTATED 3 0 1 1 1
NPAS4 WILD-TYPE 93 152 115 88 55
'NPAS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S1381.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
NPAS4 MUTATED 5 1 0 3 0
NPAS4 WILD-TYPE 230 365 82 235 41
'NPAS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S1382.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
NPAS4 MUTATED 2 3 1 0 0
NPAS4 WILD-TYPE 114 178 156 83 111
'NPAS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S1383.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
NPAS4 MUTATED 1 2 1
NPAS4 WILD-TYPE 145 127 117
'NPAS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S1384.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
NPAS4 MUTATED 0 1 1 2 0
NPAS4 WILD-TYPE 59 108 89 102 31
'NPAS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S1385.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
NPAS4 MUTATED 6 3 0
NPAS4 WILD-TYPE 486 270 208
'NPAS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S1386.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
NPAS4 MUTATED 3 2 0 1 3 0
NPAS4 WILD-TYPE 197 150 271 129 165 52
'NPAS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S1387.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
NPAS4 MUTATED 5 0 4
NPAS4 WILD-TYPE 292 205 451
'NPAS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0832 (Fisher's exact test), Q value = 1

Table S1388.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
NPAS4 MUTATED 2 1 1 0 3 2
NPAS4 WILD-TYPE 221 141 272 122 74 118
'NPAS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S1389.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
NPAS4 MUTATED 0 2 1 0 1
NPAS4 WILD-TYPE 178 118 65 92 111
'NPAS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S1390.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
NPAS4 MUTATED 3 1 0
NPAS4 WILD-TYPE 276 180 108
'JAK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S1391.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
JAK1 MUTATED 0 1 2 0 3 0 0 1
JAK1 WILD-TYPE 21 37 112 97 105 73 19 38
'JAK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S1392.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
JAK1 MUTATED 2 4 1 0 0
JAK1 WILD-TYPE 94 148 115 89 56
'JAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S1393.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
JAK1 MUTATED 2 4 2 2 0
JAK1 WILD-TYPE 233 362 80 236 41
'JAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S1394.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
JAK1 MUTATED 0 2 3 1 0
JAK1 WILD-TYPE 116 179 154 82 111
'JAK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1395.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
JAK1 MUTATED 2 2 1
JAK1 WILD-TYPE 144 127 117
'JAK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S1396.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
JAK1 MUTATED 1 2 0 2 0
JAK1 WILD-TYPE 58 107 90 102 31
'JAK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0634 (Fisher's exact test), Q value = 1

Table S1397.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
JAK1 MUTATED 7 0 4
JAK1 WILD-TYPE 485 273 204
'JAK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S1398.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
JAK1 MUTATED 2 4 4 1 0 0
JAK1 WILD-TYPE 198 148 267 129 168 52
'JAK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 1

Table S1399.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
JAK1 MUTATED 1 0 10
JAK1 WILD-TYPE 296 205 445

Figure S162.  Get High-res Image Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'JAK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S1400.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
JAK1 MUTATED 3 1 3 3 1 0
JAK1 WILD-TYPE 220 141 270 119 76 120
'JAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S1401.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
JAK1 MUTATED 4 0 0 1 0
JAK1 WILD-TYPE 174 120 66 91 112
'JAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S1402.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
JAK1 MUTATED 3 0 2
JAK1 WILD-TYPE 276 181 106
'FGFR3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0769 (Fisher's exact test), Q value = 1

Table S1403.  Gene #131: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
FGFR3 MUTATED 1 0 0 1 0 0 0 1
FGFR3 WILD-TYPE 20 38 114 96 108 73 19 38
'FGFR3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S1404.  Gene #131: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
FGFR3 MUTATED 0 1 1 1 0
FGFR3 WILD-TYPE 96 151 115 88 56
'FGFR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S1405.  Gene #131: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
FGFR3 MUTATED 1 1 0 2 0
FGFR3 WILD-TYPE 234 365 82 236 41
'FGFR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S1406.  Gene #131: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
FGFR3 MUTATED 1 2 1
FGFR3 WILD-TYPE 491 271 207
'FGFR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S1407.  Gene #131: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
FGFR3 MUTATED 0 0 1 1 2 0
FGFR3 WILD-TYPE 200 152 270 129 166 52
'FGFR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S1408.  Gene #131: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
FGFR3 MUTATED 3 0 1
FGFR3 WILD-TYPE 294 205 454
'FGFR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S1409.  Gene #131: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
FGFR3 MUTATED 0 0 1 1 0 2
FGFR3 WILD-TYPE 223 142 272 121 77 118
'FBXW7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S1410.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
FBXW7 MUTATED 0 1 1 2 2 0 0 0
FBXW7 WILD-TYPE 21 37 113 95 106 73 19 39
'FBXW7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S1411.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
FBXW7 MUTATED 1 2 0 2 1
FBXW7 WILD-TYPE 95 150 116 87 55
'FBXW7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S1412.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
FBXW7 MUTATED 2 5 0 8 0
FBXW7 WILD-TYPE 233 361 82 230 41
'FBXW7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00377 (Fisher's exact test), Q value = 1

Table S1413.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
FBXW7 MUTATED 7 2 0 1 1
FBXW7 WILD-TYPE 109 179 157 82 110

Figure S163.  Get High-res Image Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FBXW7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S1414.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
FBXW7 MUTATED 2 1 0
FBXW7 WILD-TYPE 144 128 118
'FBXW7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S1415.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
FBXW7 MUTATED 0 0 1 2 0
FBXW7 WILD-TYPE 59 109 89 102 31
'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S1416.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
FBXW7 MUTATED 5 7 3
FBXW7 WILD-TYPE 487 266 205
'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0778 (Fisher's exact test), Q value = 1

Table S1417.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
FBXW7 MUTATED 1 1 3 3 7 0
FBXW7 WILD-TYPE 199 151 268 127 161 52
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S1418.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
FBXW7 MUTATED 7 1 7
FBXW7 WILD-TYPE 290 204 448
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0517 (Fisher's exact test), Q value = 1

Table S1419.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
FBXW7 MUTATED 3 1 5 0 0 6
FBXW7 WILD-TYPE 220 141 268 122 77 114
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0618 (Fisher's exact test), Q value = 1

Table S1420.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
FBXW7 MUTATED 1 5 0 0 2
FBXW7 WILD-TYPE 177 115 66 92 110
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S1421.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
FBXW7 MUTATED 5 2 1
FBXW7 WILD-TYPE 274 179 107
'OR2T8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1422.  Gene #133: 'OR2T8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
OR2T8 MUTATED 1 2 1 2 0
OR2T8 WILD-TYPE 234 364 81 236 41
'OR2T8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S1423.  Gene #133: 'OR2T8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
OR2T8 MUTATED 2 2 2 0 0
OR2T8 WILD-TYPE 114 179 155 83 111
'OR2T8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S1424.  Gene #133: 'OR2T8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
OR2T8 MUTATED 2 2 2
OR2T8 WILD-TYPE 490 271 206
'OR2T8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S1425.  Gene #133: 'OR2T8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
OR2T8 MUTATED 2 0 2 0 1 1
OR2T8 WILD-TYPE 198 152 269 130 167 51
'OR2T8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S1426.  Gene #133: 'OR2T8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
OR2T8 MUTATED 2 3 1
OR2T8 WILD-TYPE 295 202 454
'OR2T8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S1427.  Gene #133: 'OR2T8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
OR2T8 MUTATED 0 1 3 1 0 1
OR2T8 WILD-TYPE 223 141 270 121 77 119
'OR2T8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S1428.  Gene #133: 'OR2T8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
OR2T8 MUTATED 0 2 1 0 2
OR2T8 WILD-TYPE 178 118 65 92 110
'OR2T8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S1429.  Gene #133: 'OR2T8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
OR2T8 MUTATED 2 3 0
OR2T8 WILD-TYPE 277 178 108
'SHANK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S1430.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SHANK2 MUTATED 0 0 0 2 3 5 0 0
SHANK2 WILD-TYPE 21 38 114 95 105 68 19 39
'SHANK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S1431.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SHANK2 MUTATED 0 3 5 2 0
SHANK2 WILD-TYPE 96 149 111 87 56
'SHANK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S1432.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
SHANK2 MUTATED 4 5 2 4 0
SHANK2 WILD-TYPE 231 361 80 234 41
'SHANK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S1433.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
SHANK2 MUTATED 1 0 4 2 1
SHANK2 WILD-TYPE 115 181 153 81 110
'SHANK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0673 (Fisher's exact test), Q value = 1

Table S1434.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
SHANK2 MUTATED 5 1 0
SHANK2 WILD-TYPE 141 128 118
'SHANK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S1435.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
SHANK2 MUTATED 1 0 4 1 0
SHANK2 WILD-TYPE 58 109 86 103 31
'SHANK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S1436.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
SHANK2 MUTATED 10 4 1
SHANK2 WILD-TYPE 482 269 207
'SHANK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S1437.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
SHANK2 MUTATED 2 5 5 1 2 0
SHANK2 WILD-TYPE 198 147 266 129 166 52
'SHANK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S1438.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
SHANK2 MUTATED 4 5 6
SHANK2 WILD-TYPE 293 200 449
'SHANK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S1439.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
SHANK2 MUTATED 5 0 6 2 0 2
SHANK2 WILD-TYPE 218 142 267 120 77 118
'SHANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.077 (Fisher's exact test), Q value = 1

Table S1440.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
SHANK2 MUTATED 2 1 0 0 5
SHANK2 WILD-TYPE 176 119 66 92 107
'SHANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S1441.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
SHANK2 MUTATED 2 5 1
SHANK2 WILD-TYPE 277 176 107
'TRMT2A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S1442.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TRMT2A MUTATED 0 0 3 1 1 1 0 0
TRMT2A WILD-TYPE 21 38 111 96 107 72 19 39
'TRMT2A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S1443.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TRMT2A MUTATED 2 2 1 1 0
TRMT2A WILD-TYPE 94 150 115 88 56
'TRMT2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S1444.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
TRMT2A MUTATED 2 2 0 2 1
TRMT2A WILD-TYPE 233 364 82 236 40
'TRMT2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S1445.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TRMT2A MUTATED 1 0 1 1 1
TRMT2A WILD-TYPE 115 181 156 82 110
'TRMT2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1446.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TRMT2A MUTATED 3 1 0
TRMT2A WILD-TYPE 143 128 118
'TRMT2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S1447.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TRMT2A MUTATED 1 0 1 2 0
TRMT2A WILD-TYPE 58 109 89 102 31
'TRMT2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1448.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
TRMT2A MUTATED 4 2 1
TRMT2A WILD-TYPE 488 271 207
'TRMT2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S1449.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
TRMT2A MUTATED 2 3 1 0 1 0
TRMT2A WILD-TYPE 198 149 270 130 167 52
'TRMT2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S1450.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
TRMT2A MUTATED 2 0 5
TRMT2A WILD-TYPE 295 205 450
'TRMT2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1451.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
TRMT2A MUTATED 4 1 1 0 0 1
TRMT2A WILD-TYPE 219 141 272 122 77 119
'TRMT2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1452.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
TRMT2A MUTATED 3 1 0 0 0
TRMT2A WILD-TYPE 175 119 66 92 112
'TRMT2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S1453.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
TRMT2A MUTATED 4 0 0
TRMT2A WILD-TYPE 275 181 108
'SHISA4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0857 (Fisher's exact test), Q value = 1

Table S1454.  Gene #136: 'SHISA4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SHISA4 MUTATED 0 2 1 0 0 0 0 0
SHISA4 WILD-TYPE 21 36 113 97 108 73 19 39
'SHISA4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S1455.  Gene #136: 'SHISA4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SHISA4 MUTATED 1 2 0 0 0
SHISA4 WILD-TYPE 95 150 116 89 56
'SHISA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0848 (Fisher's exact test), Q value = 1

Table S1456.  Gene #136: 'SHISA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
SHISA4 MUTATED 2 0 0 2 1
SHISA4 WILD-TYPE 233 366 82 236 40
'SHISA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S1457.  Gene #136: 'SHISA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
SHISA4 MUTATED 2 0 0 1 1
SHISA4 WILD-TYPE 114 181 157 82 110
'SHISA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S1458.  Gene #136: 'SHISA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
SHISA4 MUTATED 2 2 1
SHISA4 WILD-TYPE 490 271 207
'SHISA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S1459.  Gene #136: 'SHISA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
SHISA4 MUTATED 1 0 3 0 0 1
SHISA4 WILD-TYPE 199 152 268 130 168 51
'SHISA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S1460.  Gene #136: 'SHISA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
SHISA4 MUTATED 0 1 4
SHISA4 WILD-TYPE 297 204 451
'SHISA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1461.  Gene #136: 'SHISA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
SHISA4 MUTATED 1 1 2 1 0 0
SHISA4 WILD-TYPE 222 141 271 121 77 120
'CCNL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S1462.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CCNL2 MUTATED 0 0 1 1 1 0 0 1
CCNL2 WILD-TYPE 21 38 113 96 107 73 19 38
'CCNL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S1463.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CCNL2 MUTATED 1 2 0 1 0
CCNL2 WILD-TYPE 95 150 116 88 56
'CCNL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1464.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
CCNL2 MUTATED 2 3 0 2 0
CCNL2 WILD-TYPE 233 363 82 236 41
'CCNL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S1465.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CCNL2 MUTATED 0 0 2 1 1
CCNL2 WILD-TYPE 116 181 155 82 110
'CCNL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S1466.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
CCNL2 MUTATED 5 2 0
CCNL2 WILD-TYPE 487 271 208
'CCNL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S1467.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
CCNL2 MUTATED 0 2 3 1 1 0
CCNL2 WILD-TYPE 200 150 268 129 167 52
'CCNL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S1468.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
CCNL2 MUTATED 1 1 5
CCNL2 WILD-TYPE 296 204 450
'CCNL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S1469.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
CCNL2 MUTATED 3 0 1 2 0 1
CCNL2 WILD-TYPE 220 142 272 120 77 119
'CCNL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S1470.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
CCNL2 MUTATED 2 1 0 0 1
CCNL2 WILD-TYPE 176 119 66 92 111
'CCNL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S1471.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
CCNL2 MUTATED 3 1 0
CCNL2 WILD-TYPE 276 180 108
'SEC14L5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S1472.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SEC14L5 MUTATED 0 0 1 4 0 0 0 0
SEC14L5 WILD-TYPE 21 38 113 93 108 73 19 39
'SEC14L5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00226 (Fisher's exact test), Q value = 1

Table S1473.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SEC14L5 MUTATED 0 0 0 4 1
SEC14L5 WILD-TYPE 96 152 116 85 55

Figure S164.  Get High-res Image Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SEC14L5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S1474.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
SEC14L5 MUTATED 1 2 0 4 0
SEC14L5 WILD-TYPE 234 364 82 234 41
'SEC14L5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S1475.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
SEC14L5 MUTATED 1 0 1 0 1
SEC14L5 WILD-TYPE 115 181 156 83 110
'SEC14L5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S1476.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
SEC14L5 MUTATED 3 1 0
SEC14L5 WILD-TYPE 143 128 118
'SEC14L5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S1477.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
SEC14L5 MUTATED 1 0 3 0 0
SEC14L5 WILD-TYPE 58 109 87 104 31
'SEC14L5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0484 (Fisher's exact test), Q value = 1

Table S1478.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
SEC14L5 MUTATED 2 5 0
SEC14L5 WILD-TYPE 490 268 208

Figure S165.  Get High-res Image Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SEC14L5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0393 (Fisher's exact test), Q value = 1

Table S1479.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
SEC14L5 MUTATED 0 0 1 1 4 1
SEC14L5 WILD-TYPE 200 152 270 129 164 51

Figure S166.  Get High-res Image Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SEC14L5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00318 (Fisher's exact test), Q value = 1

Table S1480.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
SEC14L5 MUTATED 6 1 0
SEC14L5 WILD-TYPE 291 204 455

Figure S167.  Get High-res Image Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SEC14L5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S1481.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
SEC14L5 MUTATED 1 2 1 0 0 3
SEC14L5 WILD-TYPE 222 140 272 122 77 117
'SEC14L5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S1482.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
SEC14L5 MUTATED 0 2 0 0 1
SEC14L5 WILD-TYPE 178 118 66 92 111
'SEC14L5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1483.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
SEC14L5 MUTATED 2 1 0
SEC14L5 WILD-TYPE 277 180 108
'SARM1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S1484.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SARM1 MUTATED 0 0 0 3 1 1 0 0
SARM1 WILD-TYPE 21 38 114 94 107 72 19 39
'SARM1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S1485.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SARM1 MUTATED 1 0 1 3 0
SARM1 WILD-TYPE 95 152 115 86 56
'SARM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1486.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
SARM1 MUTATED 3 2 0 1 0
SARM1 WILD-TYPE 232 364 82 237 41
'SARM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S1487.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
SARM1 MUTATED 2 0 1
SARM1 WILD-TYPE 144 129 117
'SARM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0377 (Fisher's exact test), Q value = 1

Table S1488.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
SARM1 MUTATED 0 0 3 0 0
SARM1 WILD-TYPE 59 109 87 104 31

Figure S168.  Get High-res Image Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'SARM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S1489.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
SARM1 MUTATED 2 4 0
SARM1 WILD-TYPE 490 269 208
'SARM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 1

Table S1490.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
SARM1 MUTATED 0 3 0 0 3 0
SARM1 WILD-TYPE 200 149 271 130 165 52

Figure S169.  Get High-res Image Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SARM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S1491.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
SARM1 MUTATED 4 0 2
SARM1 WILD-TYPE 293 205 453
'SARM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S1492.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
SARM1 MUTATED 3 1 0 0 0 2
SARM1 WILD-TYPE 220 141 273 122 77 118
'SARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S1493.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
SARM1 MUTATED 1 2 0 0 0
SARM1 WILD-TYPE 177 118 66 92 112
'SARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S1494.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
SARM1 MUTATED 3 0 0
SARM1 WILD-TYPE 276 181 108
'CLEC18B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S1495.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CLEC18B MUTATED 0 1 1 1 0 0 0 0
CLEC18B WILD-TYPE 21 37 113 96 108 73 19 39
'CLEC18B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1496.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CLEC18B MUTATED 1 1 1 0 0
CLEC18B WILD-TYPE 95 151 115 89 56
'CLEC18B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S1497.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
CLEC18B MUTATED 2 1 1 2 0
CLEC18B WILD-TYPE 233 365 81 236 41
'CLEC18B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1498.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CLEC18B MUTATED 2 2 1 0 0
CLEC18B WILD-TYPE 114 179 156 83 111
'CLEC18B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1499.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CLEC18B MUTATED 1 0 2
CLEC18B WILD-TYPE 145 129 116
'CLEC18B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S1500.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CLEC18B MUTATED 0 0 1 2 0
CLEC18B WILD-TYPE 59 109 89 102 31
'CLEC18B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1501.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
CLEC18B MUTATED 2 2 2
CLEC18B WILD-TYPE 490 271 206
'CLEC18B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S1502.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
CLEC18B MUTATED 1 2 2 1 0 0
CLEC18B WILD-TYPE 199 150 269 129 168 52
'CLEC18B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S1503.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
CLEC18B MUTATED 2 2 2
CLEC18B WILD-TYPE 295 203 453
'CLEC18B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S1504.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
CLEC18B MUTATED 3 1 1 0 1 0
CLEC18B WILD-TYPE 220 141 272 122 76 120
'CLEC18B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S1505.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
CLEC18B MUTATED 2 1 0 0 0
CLEC18B WILD-TYPE 176 119 66 92 112
'CLEC18B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S1506.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
CLEC18B MUTATED 3 0 0
CLEC18B WILD-TYPE 276 181 108
'GIPC3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S1507.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
GIPC3 MUTATED 0 0 2 0 1 0 0 0
GIPC3 WILD-TYPE 21 38 112 97 107 73 19 39
'GIPC3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S1508.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
GIPC3 MUTATED 1 1 0 0 1
GIPC3 WILD-TYPE 95 151 116 89 55
'GIPC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1509.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
GIPC3 MUTATED 0 1 1 1 0
GIPC3 WILD-TYPE 235 365 81 237 41
'GIPC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1510.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
GIPC3 MUTATED 1 1 1
GIPC3 WILD-TYPE 145 128 117
'GIPC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S1511.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
GIPC3 MUTATED 2 1 0 0 0
GIPC3 WILD-TYPE 57 108 90 104 31
'GIPC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1512.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
GIPC3 MUTATED 4 0 0
GIPC3 WILD-TYPE 488 273 208
'GIPC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S1513.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
GIPC3 MUTATED 2 0 0 2 0 0
GIPC3 WILD-TYPE 198 152 271 128 168 52
'GIPC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S1514.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
GIPC3 MUTATED 1 0 3
GIPC3 WILD-TYPE 296 205 452
'GIPC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S1515.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
GIPC3 MUTATED 1 1 0 1 1 0
GIPC3 WILD-TYPE 222 141 273 121 76 120
'HPS3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S1516.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
HPS3 MUTATED 0 0 0 2 0 2 1 0
HPS3 WILD-TYPE 21 38 114 95 108 71 18 39
'HPS3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1517.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
HPS3 MUTATED 0 1 2 2 0
HPS3 WILD-TYPE 96 151 114 87 56
'HPS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S1518.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
HPS3 MUTATED 0 5 0 4 0
HPS3 WILD-TYPE 235 361 82 234 41
'HPS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S1519.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
HPS3 MUTATED 2 0 1 0 2
HPS3 WILD-TYPE 114 181 156 83 109
'HPS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S1520.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
HPS3 MUTATED 3 0 0
HPS3 WILD-TYPE 143 129 118
'HPS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0492 (Fisher's exact test), Q value = 1

Table S1521.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
HPS3 MUTATED 0 0 2 0 1
HPS3 WILD-TYPE 59 109 88 104 30

Figure S170.  Get High-res Image Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'HPS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00535 (Fisher's exact test), Q value = 1

Table S1522.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
HPS3 MUTATED 1 7 1
HPS3 WILD-TYPE 491 266 207

Figure S171.  Get High-res Image Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HPS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00419 (Fisher's exact test), Q value = 1

Table S1523.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
HPS3 MUTATED 0 0 1 1 5 2
HPS3 WILD-TYPE 200 152 270 129 163 50

Figure S172.  Get High-res Image Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HPS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0097 (Fisher's exact test), Q value = 1

Table S1524.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
HPS3 MUTATED 7 1 1
HPS3 WILD-TYPE 290 204 454

Figure S173.  Get High-res Image Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HPS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S1525.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
HPS3 MUTATED 1 3 1 1 0 3
HPS3 WILD-TYPE 222 139 272 121 77 117
'HPS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0605 (Fisher's exact test), Q value = 1

Table S1526.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
HPS3 MUTATED 0 4 0 1 1
HPS3 WILD-TYPE 178 116 66 91 111
'HPS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S1527.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
HPS3 MUTATED 3 1 2
HPS3 WILD-TYPE 276 180 106
'OR2T35 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1528.  Gene #143: 'OR2T35 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
OR2T35 MUTATED 0 0 1 1 1 0 0 0
OR2T35 WILD-TYPE 21 38 113 96 107 73 19 39
'OR2T35 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0968 (Fisher's exact test), Q value = 1

Table S1529.  Gene #143: 'OR2T35 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
OR2T35 MUTATED 0 0 2 0 1
OR2T35 WILD-TYPE 96 152 114 89 55
'OR2T35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S1530.  Gene #143: 'OR2T35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
OR2T35 MUTATED 2 1 0 1 0
OR2T35 WILD-TYPE 233 365 82 237 41
'OR2T35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1531.  Gene #143: 'OR2T35 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
OR2T35 MUTATED 3 1 0
OR2T35 WILD-TYPE 489 272 208
'OR2T35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S1532.  Gene #143: 'OR2T35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
OR2T35 MUTATED 2 1 0 0 1 0
OR2T35 WILD-TYPE 198 151 271 130 167 52
'OR2T35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S1533.  Gene #143: 'OR2T35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
OR2T35 MUTATED 1 0 3
OR2T35 WILD-TYPE 296 205 452
'OR2T35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S1534.  Gene #143: 'OR2T35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
OR2T35 MUTATED 2 1 0 1 0 0
OR2T35 WILD-TYPE 221 141 273 121 77 120
'PPIL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1535.  Gene #144: 'PPIL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
PPIL2 MUTATED 1 1 1 3 0
PPIL2 WILD-TYPE 234 365 81 235 41
'PPIL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1536.  Gene #144: 'PPIL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PPIL2 MUTATED 2 2 1 0 0
PPIL2 WILD-TYPE 114 179 156 83 111
'PPIL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S1537.  Gene #144: 'PPIL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
PPIL2 MUTATED 3 3 0
PPIL2 WILD-TYPE 489 270 208
'PPIL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S1538.  Gene #144: 'PPIL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
PPIL2 MUTATED 2 1 1 0 2 0
PPIL2 WILD-TYPE 198 151 270 130 166 52
'PPIL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S1539.  Gene #144: 'PPIL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
PPIL2 MUTATED 1 0 4
PPIL2 WILD-TYPE 296 205 451
'PPIL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S1540.  Gene #144: 'PPIL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
PPIL2 MUTATED 2 1 2 0 0 0
PPIL2 WILD-TYPE 221 141 271 122 77 120
'PPIL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1541.  Gene #144: 'PPIL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
PPIL2 MUTATED 0 0 1 1 1
PPIL2 WILD-TYPE 178 120 65 91 111
'PPIL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.039 (Fisher's exact test), Q value = 1

Table S1542.  Gene #144: 'PPIL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
PPIL2 MUTATED 0 3 0
PPIL2 WILD-TYPE 279 178 108

Figure S174.  Get High-res Image Gene #144: 'PPIL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF397 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0716 (Fisher's exact test), Q value = 1

Table S1543.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ZNF397 MUTATED 0 1 0 0 1 0 1 0
ZNF397 WILD-TYPE 21 37 114 97 107 73 18 39
'ZNF397 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S1544.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ZNF397 MUTATED 0 2 1 0 0
ZNF397 WILD-TYPE 96 150 115 89 56
'ZNF397 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S1545.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ZNF397 MUTATED 4 2 0 1 0
ZNF397 WILD-TYPE 231 364 82 237 41
'ZNF397 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S1546.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ZNF397 MUTATED 0 2 3 0 1
ZNF397 WILD-TYPE 116 179 154 83 110
'ZNF397 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1547.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ZNF397 MUTATED 4 2 1
ZNF397 WILD-TYPE 488 271 207
'ZNF397 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S1548.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ZNF397 MUTATED 2 1 4 0 0 0
ZNF397 WILD-TYPE 198 151 267 130 168 52
'ZNF397 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S1549.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ZNF397 MUTATED 1 2 4
ZNF397 WILD-TYPE 296 203 451
'ZNF397 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S1550.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ZNF397 MUTATED 2 0 3 1 1 0
ZNF397 WILD-TYPE 221 142 270 121 76 120
'ZNF397 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S1551.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ZNF397 MUTATED 2 0 1 0 1
ZNF397 WILD-TYPE 176 120 65 92 111
'ZNF397 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1552.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ZNF397 MUTATED 2 2 0
ZNF397 WILD-TYPE 277 179 108
'MLL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1553.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MLL MUTATED 0 2 2 1 1 2 0 1
MLL WILD-TYPE 21 36 112 96 107 71 19 38
'MLL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S1554.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MLL MUTATED 1 5 2 1 0
MLL WILD-TYPE 95 147 114 88 56
'MLL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S1555.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
MLL MUTATED 5 3 1 7 1
MLL WILD-TYPE 230 363 81 231 40
'MLL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S1556.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MLL MUTATED 5 1 3 1 2
MLL WILD-TYPE 111 180 154 82 109
'MLL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S1557.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MLL MUTATED 3 1 2
MLL WILD-TYPE 143 128 116
'MLL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S1558.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MLL MUTATED 1 1 1 1 2
MLL WILD-TYPE 58 108 89 103 29
'MLL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S1559.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
MLL MUTATED 6 8 2
MLL WILD-TYPE 486 265 206
'MLL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1560.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
MLL MUTATED 5 1 3 0 5 2
MLL WILD-TYPE 195 151 268 130 163 50
'MLL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0698 (Fisher's exact test), Q value = 1

Table S1561.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
MLL MUTATED 6 0 10
MLL WILD-TYPE 291 205 445
'MLL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1562.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
MLL MUTATED 6 2 2 1 2 3
MLL WILD-TYPE 217 140 271 121 75 117
'MLL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S1563.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
MLL MUTATED 2 4 1 1 0
MLL WILD-TYPE 176 116 65 91 112
'MLL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0692 (Fisher's exact test), Q value = 1

Table S1564.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
MLL MUTATED 7 0 1
MLL WILD-TYPE 272 181 107
'ACVR1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S1565.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ACVR1B MUTATED 0 0 1 2 2 0 0 0
ACVR1B WILD-TYPE 21 38 113 95 106 73 19 39
'ACVR1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1566.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ACVR1B MUTATED 1 2 1 1 0
ACVR1B WILD-TYPE 95 150 115 88 56
'ACVR1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S1567.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ACVR1B MUTATED 2 2 0 2 0
ACVR1B WILD-TYPE 233 364 82 236 41
'ACVR1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S1568.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ACVR1B MUTATED 1 1 1 1 0
ACVR1B WILD-TYPE 115 180 156 82 111
'ACVR1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1569.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ACVR1B MUTATED 2 2 0
ACVR1B WILD-TYPE 144 127 118
'ACVR1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0973 (Fisher's exact test), Q value = 1

Table S1570.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ACVR1B MUTATED 2 0 2 0 0
ACVR1B WILD-TYPE 57 109 88 104 31
'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1571.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ACVR1B MUTATED 3 4 0
ACVR1B WILD-TYPE 489 269 208
'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S1572.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ACVR1B MUTATED 1 2 0 1 3 0
ACVR1B WILD-TYPE 199 150 271 129 165 52
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S1573.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ACVR1B MUTATED 4 0 3
ACVR1B WILD-TYPE 293 205 452
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S1574.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ACVR1B MUTATED 1 2 0 2 1 1
ACVR1B WILD-TYPE 222 140 273 120 76 119
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S1575.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ACVR1B MUTATED 1 2 0 0 0
ACVR1B WILD-TYPE 177 118 66 92 112
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S1576.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ACVR1B MUTATED 3 0 0
ACVR1B WILD-TYPE 276 181 108
'GPR158 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1577.  Gene #148: 'GPR158 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
GPR158 MUTATED 1 1 0 1 0
GPR158 WILD-TYPE 234 365 82 237 41
'GPR158 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S1578.  Gene #148: 'GPR158 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
GPR158 MUTATED 1 2 0
GPR158 WILD-TYPE 491 271 208
'GPR158 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S1579.  Gene #148: 'GPR158 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
GPR158 MUTATED 0 0 1 0 2 0
GPR158 WILD-TYPE 200 152 270 130 166 52
'GPR158 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S1580.  Gene #148: 'GPR158 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
GPR158 MUTATED 1 1 1
GPR158 WILD-TYPE 296 204 454
'GPR158 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S1581.  Gene #148: 'GPR158 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
GPR158 MUTATED 0 0 2 0 0 1
GPR158 WILD-TYPE 223 142 271 122 77 119
'ARHGEF15 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S1582.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ARHGEF15 MUTATED 1 0 4 2 1 0 0 0
ARHGEF15 WILD-TYPE 20 38 110 95 107 73 19 39
'ARHGEF15 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S1583.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ARHGEF15 MUTATED 4 1 1 2 0
ARHGEF15 WILD-TYPE 92 151 115 87 56
'ARHGEF15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S1584.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
ARHGEF15 MUTATED 4 3 0 2 0
ARHGEF15 WILD-TYPE 231 363 82 236 41
'ARHGEF15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S1585.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ARHGEF15 MUTATED 1 0 1 1 1
ARHGEF15 WILD-TYPE 115 181 156 82 110
'ARHGEF15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S1586.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ARHGEF15 MUTATED 2 3 2
ARHGEF15 WILD-TYPE 144 126 116
'ARHGEF15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S1587.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ARHGEF15 MUTATED 2 1 2 2 0
ARHGEF15 WILD-TYPE 57 108 88 102 31
'ARHGEF15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S1588.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
ARHGEF15 MUTATED 6 3 0
ARHGEF15 WILD-TYPE 486 270 208
'ARHGEF15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S1589.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
ARHGEF15 MUTATED 3 3 0 1 2 0
ARHGEF15 WILD-TYPE 197 149 271 129 166 52
'ARHGEF15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1590.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
ARHGEF15 MUTATED 5 0 3
ARHGEF15 WILD-TYPE 292 205 452
'ARHGEF15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S1591.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
ARHGEF15 MUTATED 3 1 0 2 1 1
ARHGEF15 WILD-TYPE 220 141 273 120 76 119
'ARHGEF15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S1592.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
ARHGEF15 MUTATED 2 1 0 0 0
ARHGEF15 WILD-TYPE 176 119 66 92 112
'ARHGEF15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S1593.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
ARHGEF15 MUTATED 3 0 0
ARHGEF15 WILD-TYPE 276 181 108
'TXNDC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S1594.  Gene #150: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
TXNDC2 MUTATED 0 2 1 1 0
TXNDC2 WILD-TYPE 235 364 81 237 41
'TXNDC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S1595.  Gene #150: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TXNDC2 MUTATED 2 1 1 0 0
TXNDC2 WILD-TYPE 114 180 156 83 111
'TXNDC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S1596.  Gene #150: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
TXNDC2 MUTATED 1 3 0
TXNDC2 WILD-TYPE 491 270 208
'TXNDC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S1597.  Gene #150: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
TXNDC2 MUTATED 1 1 0 0 1 1
TXNDC2 WILD-TYPE 199 151 271 130 167 51
'TXNDC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S1598.  Gene #150: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
TXNDC2 MUTATED 3 0 1
TXNDC2 WILD-TYPE 294 205 454
'TXNDC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S1599.  Gene #150: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
TXNDC2 MUTATED 2 1 0 0 0 1
TXNDC2 WILD-TYPE 221 141 273 122 77 119
'COL9A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S1600.  Gene #151: 'COL9A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
COL9A2 MUTATED 1 0 0 2 0
COL9A2 WILD-TYPE 234 366 82 236 41
'COL9A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S1601.  Gene #151: 'COL9A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
COL9A2 MUTATED 2 0 1 0 0
COL9A2 WILD-TYPE 114 181 156 83 111
'COL9A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S1602.  Gene #151: 'COL9A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
COL9A2 MUTATED 1 2 0
COL9A2 WILD-TYPE 491 271 208
'COL9A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S1603.  Gene #151: 'COL9A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
COL9A2 MUTATED 1 0 0 0 2 0
COL9A2 WILD-TYPE 199 152 271 130 166 52
'PARP4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S1604.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PARP4 MUTATED 0 0 1 0 1 2 0 0
PARP4 WILD-TYPE 21 38 113 97 107 71 19 39
'PARP4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S1605.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PARP4 MUTATED 1 1 2 0 0
PARP4 WILD-TYPE 95 151 114 89 56
'PARP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S1606.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 235 366 82 238 41
PARP4 MUTATED 2 5 3 2 0
PARP4 WILD-TYPE 233 361 79 236 41
'PARP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S1607.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PARP4 MUTATED 0 2 3 0 4
PARP4 WILD-TYPE 116 179 154 83 107
'PARP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S1608.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 492 273 208
PARP4 MUTATED 7 1 4
PARP4 WILD-TYPE 485 272 204
'PARP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S1609.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 200 152 271 130 168 52
PARP4 MUTATED 1 4 5 1 0 1
PARP4 WILD-TYPE 199 148 266 129 168 51
'PARP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 1

Table S1610.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 297 205 455
PARP4 MUTATED 0 4 8
PARP4 WILD-TYPE 297 201 447

Figure S175.  Get High-res Image Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PARP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S1611.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 223 142 273 122 77 120
PARP4 MUTATED 6 2 4 0 0 0
PARP4 WILD-TYPE 217 140 269 122 77 120
'PARP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 1

Table S1612.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 178 120 66 92 112
PARP4 MUTATED 1 0 3 1 1
PARP4 WILD-TYPE 177 120 63 91 111
'PARP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S1613.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 279 181 108
PARP4 MUTATED 1 4 1
PARP4 WILD-TYPE 278 177 107
Methods & Data
Input

  • Mutation data file = transformed.cor.cli.txt

  • Molecular subtypes file = BRCA-TP.transferedmergedcluster.txt

  • Number of patients = 976

  • Number of significantly mutated genes = 152

  • Number of Molecular subtypes = 12

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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