Clinical Features	CN_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	10 (28%)	26	0.13937	1	0.6373	1	0.55543	1	0.10987	1	0.26267	1	0.26005	1	0.68542	1
1q gain	21 (58%)	15	0.516	1	0.6921	1	0.23632	1	0.11206	1	0.17887	1	0.73579	1	0.59147	1
2p gain	6 (17%)	30	0.66171	1	1	1	0.92299	1	0.36556	1	0.54606	1	1	1	0.60013	1
2q gain	6 (17%)	30	0.18213	1	0.52284	1	0.50299	1	0.36958	1	0.39854	1	1	1	0.59929	1
3p gain	3 (8%)	33	0.23095	1	0.32397	1	0.15679	1	0.3365	1	0.23695	1	0.063725	1	0.57766	1
3q gain	8 (22%)	28	0.2357	1	0.099669	1	0.097879	1	0.53808	1	0.66736	1	1	1	0.39655	1
4p gain	3 (8%)	33	1	1	1	1	0.79205	1	0.76676	1	0.42238	1	0.55882	1	1	1
5p gain	12 (33%)	24	1	1	0.61242	1	0.97742	1	0.76653	1	1	1	1	1	0.76236	1
5q gain	12 (33%)	24	1	1	0.61432	1	0.97741	1	0.76285	1	1	1	1	1	0.76294	1
6p gain	7 (19%)	29	0.68426	1	0.36684	1	0.89397	1	0.18722	1	0.31728	1	0.67378	1	0.23927	1
7p gain	7 (19%)	29	0.68426	1	0.20755	1	0.38748	1	0.37238	1	0.56707	1	0.67378	1	0.01893	1
7q gain	6 (17%)	30	1	1	0.44874	1	0.53491	1	0.68634	1	0.82119	1	1	1	0.0076299	1
8p gain	6 (17%)	30	1	1	0.33237	1	0.1672	1	0.20378	1	0.36562	1	0.36668	1	0.11625	1
8q gain	12 (33%)	24	1	1	0.17182	1	0.541	1	0.18243	1	0.16713	1	0.72102	1	0.13065	1
10p gain	5 (14%)	31	1	1	0.83405	1	0.075519	1	0.78763	1	0.93348	1	0.62957	1	0.86183	1
11p gain	4 (11%)	32	0.60519	1	0.2025	1	0.0051999	1	0.74053	1	0.74463	1	0.28699	1	0.18701	1
11q gain	4 (11%)	32	0.60519	1	0.20178	1	0.0054099	1	0.73991	1	0.74805	1	0.28699	1	0.18784	1
12p gain	9 (25%)	27	1	1	1	1	0.90651	1	0.46228	1	0.84048	1	0.4427	1	0.33462	1
12q gain	8 (22%)	28	1	1	0.8802	1	0.98297	1	0.43691	1	0.82485	1	0.23576	1	0.62917	1
13q gain	3 (8%)	33	0.23095	1	0.04283	1	0.03972	1	0.39534	1	0.88898	1	1	1	0.0243	1
15q gain	6 (17%)	30	0.66171	1	0.86302	1	0.65899	1	0.1931	1	0.43653	1	0.67737	1	0.0092799	1
16p gain	7 (19%)	29	0.091789	1	0.66068	1	0.63985	1	0.37356	1	0.91542	1	0.67378	1	0.29714	1
16q gain	5 (14%)	31	0.34199	1	1	1	0.62343	1	0.92098	1	0.9326	1	1	1	0.92714	1
17p gain	3 (8%)	33	1	1	0.77433	1	0.21361	1	0.68339	1	0.61062	1	0.55882	1	0.57832	1
17q gain	7 (19%)	29	1	1	0.49567	1	0.25491	1	0.93606	1	1	1	0.41782	1	0.52074	1
18p gain	7 (19%)	29	1	1	0.66287	1	0.76176	1	0.48162	1	0.88019	1	0.41782	1	0.84571	1
18q gain	6 (17%)	30	0.39108	1	0.070809	1	0.56877	1	0.19436	1	0.43713	1	0.67737	1	0.39059	1
19p gain	6 (17%)	30	0.66171	1	0.62711	1	0.65883	1	0.5804	1	0.43702	1	0.062805	1	1	1
19q gain	6 (17%)	30	0.66171	1	0.62532	1	0.65901	1	0.58299	1	0.43466	1	0.062805	1	1	1
20p gain	11 (31%)	25	1	1	0.7236	1	0.42338	1	0.23661	1	0.28058	1	0.46459	1	0.34282	1
20q gain	12 (33%)	24	0.73173	1	0.75379	1	0.28382	1	0.14165	1	0.14873	1	0.49911	1	0.22503	1
21q gain	3 (8%)	33	1	1	0.45766	1	0.88568	1	0.18391	1	0.70793	1	0.25	1	0.13281	1
22q gain	5 (14%)	31	0.34199	1	0.086429	1	0.28417	1	0.8506	1	0.93476	1	1	1	0.92623	1
1p loss	4 (11%)	32	1	1	0.65586	1	0.6125	1	0.81623	1	0.79554	1	0.62567	1	0.81025	1
3p loss	22 (61%)	14	0.0022205	1	0.61611	1	0.01193	1	0.77397	1	0.58531	1	0.49921	1	0.99146	1
3q loss	3 (8%)	33	0.59286	1	0.16728	1	0.02187	1	0.68349	1	0.61113	1	0.55882	1	0.39599	1
4p loss	10 (28%)	26	0.27417	1	0.22299	1	0.32299	1	0.78332	1	0.64731	1	0.7086	1	0.28824	1
4q loss	13 (36%)	23	1	1	0.36995	1	0.38804	1	0.4594	1	0.83732	1	0.73555	1	0.36323	1
6p loss	5 (14%)	31	0.65043	1	0.70253	1	0.98218	1	0.37133	1	0.24126	1	0.62957	1	0.9815	1
6q loss	20 (56%)	16	0.00024181	0.11	0.18918	1	0.14286	1	0.20976	1	0.25415	1	0.32043	1	0.41079	1
7p loss	4 (11%)	32	0.60519	1	0.43007	1	0.28253	1	0.51579	1	0.90456	1	1	1	0.85853	1
7q loss	4 (11%)	32	1	1	0.42938	1	0.28304	1	0.32067	1	0.27585	1	0.28699	1	0.39103	1
8p loss	10 (28%)	26	0.71692	1	0.01763	1	0.077679	1	0.094369	1	0.03655	1	0.26005	1	0.17255	1
8q loss	3 (8%)	33	0.59286	1	0.24381	1	0.79213	1	0.76888	1	0.076089	1	1	1	0.13532	1
9p loss	18 (50%)	18	1	1	0.6941	1	0.29584	1	0.18752	1	0.12612	1	0.49979	1	0.59081	1
9q loss	19 (53%)	17	1	1	0.57895	1	0.13286	1	0.70845	1	0.36681	1	0.19221	1	0.6042	1
10p loss	6 (17%)	30	1	1	0.73172	1	0.35962	1	0.57949	1	0.77444	1	0.67737	1	0.01469	1
10q loss	5 (14%)	31	0.16721	1	0.4098	1	0.98212	1	0.84917	1	0.69534	1	1	1	0.55496	1
11p loss	8 (22%)	28	0.43385	1	0.20666	1	0.53231	1	1	1	0.83986	1	0.69403	1	0.39259	1
11q loss	9 (25%)	27	0.25529	1	0.073829	1	0.47323	1	0.76536	1	0.58311	1	0.70496	1	0.75938	1
12q loss	3 (8%)	33	0.23095	1	0.32505	1	0.15707	1	0.60729	1	1	1	1	1	0.39558	1
13q loss	15 (42%)	21	1	1	0.62938	1	0.74459	1	0.75316	1	0.31336	1	0.73579	1	0.33145	1
14q loss	13 (36%)	23	0.013954	1	1	1	0.04396	1	1	1	0.90905	1	0.4837	1	0.27905	1
15q loss	5 (14%)	31	0.34199	1	0.085719	1	0.28699	1	0.51029	1	0.75608	1	0.62957	1	0.98246	1
16p loss	4 (11%)	32	1	1	0.80635	1	1	1	0.74028	1	0.9664	1	0.62567	1	0.18559	1
16q loss	7 (19%)	29	0.68426	1	0.66198	1	0.41216	1	0.65997	1	0.01908	1	1	1	0.66438	1
17p loss	10 (28%)	26	0.71692	1	0.11362	1	0.35204	1	0.2536	1	0.28994	1	1	1	0.1398	1
18p loss	6 (17%)	30	1	1	0.4479	1	0.60412	1	0.23861	1	0.57055	1	0.36668	1	0.31049	1
18q loss	8 (22%)	28	0.2357	1	0.10108	1	0.61247	1	0.13375	1	0.25101	1	0.42405	1	0.064459	1
19p loss	4 (11%)	32	0.60519	1	0.14484	1	0.68283	1	0.050399	1	0.24121	1	0.12478	1	0.0084399	1
19q loss	3 (8%)	33	1	1	0.32623	1	0.72985	1	0.86169	1	1	1	1	1	0.57937	1
20p loss	5 (14%)	31	1	1	0.03148	1	0.52151	1	0.096259	1	0.4155	1	0.37611	1	0.01144	1
21q loss	15 (42%)	21	0.31067	1	0.13303	1	0.2883	1	0.33596	1	0.6304	1	0.31037	1	0.68788	1
22q loss	5 (14%)	31	0.65043	1	0.32922	1	0.15396	1	0.67374	1	0.80527	1	0.37611	1	0.40095	1
xq loss	15 (42%)	21	0.0018513	0.84	1	1	0.26582	1	0.57361	1	0.96154	1	0.50061	1	0.99573	1