Clinical Features MRNA_CNMF MRNA_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q amp_2q33.1 92 (20%) 358 0.16544 1 0.11403 1 5e-05 0.0334 0.00459 1 0.04314 1 0.04953 1 0.02193 1 0.00088999 0.529 0.29267 1 0.10777 1 0.95142 1 0.67342 1 amp_5p13.2 88 (20%) 362 0.37931 1 0.19279 1 0.0012 0.702 0.54629 1 0.00458 1 0.91357 1 0.2431 1 0.00027 0.171 0.72965 1 0.66388 1 0.75371 1 0.58361 1 amp_5q22.3 46 (10%) 404 0.92215 1 1 1 0.01206 1 0.80462 1 0.3266 1 0.64067 1 0.28982 1 0.12292 1 0.95037 1 0.70149 1 0.35645 1 0.33259 1 amp_6p21.1 96 (21%) 354 0.26556 1 5e-05 0.0334 9.9999e-06 0.00812 0.096129 1 0.5062 1 0.70003 1 0.0093999 1 8.9999e-05 0.0589 0.70612 1 0.77426 1 0.3094 1 0.3966 1 amp_7p21.2 255 (57%) 195 0.0097199 1 9.9999e-06 0.00812 9.9999e-06 0.00812 0.00013 0.0842 0.00118 0.693 0.00167 0.957 9.9999e-06 0.00812 9.9999e-06 0.00812 0.54429 1 0.45632 1 0.84093 1 0.03406 1 amp_8p11.23 158 (35%) 292 0.30159 1 0.10859 1 9.9999e-06 0.00812 0.3861 1 0.76537 1 0.62453 1 0.0083199 1 0.03123 1 0.35791 1 0.26632 1 0.50522 1 0.12706 1 amp_8p11.21 188 (42%) 262 0.44508 1 0.01858 1 9.9999e-06 0.00812 0.2888 1 0.24246 1 0.02451 1 0.0182 1 0.0050699 1 0.71816 1 0.32335 1 0.53823 1 0.10399 1 amp_8q12.1 236 (52%) 214 0.49017 1 0.0057599 1 9.9999e-06 0.00812 0.0069799 1 0.0099399 1 0.00346 1 0.00192 1 0.00014 0.0904 0.38342 1 0.03721 1 0.27474 1 0.01284 1 amp_8q24.21 260 (58%) 190 0.56079 1 0.02822 1 9.9999e-06 0.00812 0.00058999 0.359 0.0395 1 0.01318 1 0.00036 0.227 5.9999e-05 0.0397 0.71242 1 0.03842 1 0.26487 1 0.01566 1 amp_11p15.5 94 (21%) 356 6.9999e-05 0.0461 0.0054899 1 9.9999e-06 0.00812 2e-05 0.0136 0.00095999 0.567 0.03351 1 2e-05 0.0136 9.9999e-06 0.00812 0.10557 1 9.9999e-06 0.00812 0.94135 1 0.27703 1 amp_12p13.33 111 (25%) 339 0.65599 1 0.79617 1 0.01616 1 0.04895 1 0.42796 1 0.87462 1 0.37376 1 0.81984 1 0.51193 1 0.7956 1 0.62938 1 0.84809 1 amp_13q12.13 275 (61%) 175 2e-05 0.0136 9.9999e-06 0.00812 9.9999e-06 0.00812 9.9999e-06 0.00812 0.00485 1 0.01971 1 9.9999e-06 0.00812 9.9999e-06 0.00812 0.57404 1 0.8117 1 0.39811 1 0.0156 1 amp_13q22.1 277 (62%) 173 0.00013 0.0842 9.9999e-06 0.00812 9.9999e-06 0.00812 2e-05 0.0136 0.0088499 1 0.04837 1 9.9999e-06 0.00812 9.9999e-06 0.00812 0.45224 1 0.99632 1 0.39735 1 0.076989 1 amp_16p11.2 126 (28%) 324 0.00041 0.257 9.9999e-06 0.00812 9.9999e-06 0.00812 0.02548 1 0.03055 1 0.12428 1 0.00047 0.292 9.9999e-06 0.00812 0.89206 1 0.14248 1 0.95923 1 0.061059 1 amp_16q12.1 111 (25%) 339 5e-05 0.0334 9.9999e-06 0.00812 9.9999e-06 0.00812 0.056439 1 0.10999 1 0.18679 1 0.00087999 0.524 9.9999e-06 0.00812 0.97507 1 0.082699 1 0.55542 1 0.02363 1 amp_17p11.2 44 (10%) 406 0.26545 1 0.00394 1 0.041 1 0.086789 1 0.00407 1 0.060879 1 0.0065299 1 0.16018 1 0.54504 1 0.80339 1 0.17308 1 0.064919 1 amp_17q12 114 (25%) 336 0.02573 1 0.01432 1 9.9999e-06 0.00812 0.00053999 0.332 0.14006 1 0.00245 1 5e-05 0.0334 0.00088999 0.529 0.03749 1 0.01407 1 0.53251 1 0.56039 1 amp_17q24.1 106 (24%) 344 0.0168 1 0.0076299 1 9.9999e-06 0.00812 0.00025 0.159 0.062699 1 0.00212 1 9.9999e-06 0.00812 9.9999e-06 0.00812 0.01224 1 0.054319 1 0.21139 1 0.53375 1 amp_19p13.2 75 (17%) 375 0.067919 1 0.054289 1 5e-05 0.0334 0.0128 1 0.67546 1 0.38263 1 0.25422 1 0.00181 1 0.34818 1 0.43575 1 0.10392 1 0.02287 1 amp_19q13.11 95 (21%) 355 0.18282 1 0.03131 1 7.9999e-05 0.0526 0.094499 1 0.03413 1 0.31262 1 0.04579 1 0.00014 0.0904 0.46043 1 0.55715 1 0.01766 1 0.00156 0.899 amp_20p12.1 208 (46%) 242 0.04681 1 0.00087999 0.524 9.9999e-06 0.00812 0.12826 1 0.0092699 1 0.26511 1 0.00325 1 9.9999e-06 0.00812 0.26169 1 0.33952 1 0.27849 1 0.522 1 amp_20p11.21 252 (56%) 198 0.00218 1 9.9999e-06 0.00812 9.9999e-06 0.00812 9.9999e-06 0.00812 0.00362 1 0.10335 1 9.9999e-06 0.00812 9.9999e-06 0.00812 0.16596 1 0.03663 1 0.91919 1 0.04929 1 amp_20q11.21 323 (72%) 127 9.9999e-06 0.00812 9.9999e-06 0.00812 9.9999e-06 0.00812 9.9999e-06 0.00812 0.00084999 0.507 0.00234 1 9.9999e-06 0.00812 9.9999e-06 0.00812 0.82305 1 0.0016 0.918 1 1 0.00414 1 amp_20q12 324 (72%) 126 9.9999e-06 0.00812 9.9999e-06 0.00812 9.9999e-06 0.00812 9.9999e-06 0.00812 0.00048 0.298 4e-04 0.251 9.9999e-06 0.00812 9.9999e-06 0.00812 0.77508 1 0.00132 0.764 1 1 0.0054499 1 amp_20q13.12 326 (72%) 124 9.9999e-06 0.00812 9.9999e-06 0.00812 9.9999e-06 0.00812 9.9999e-06 0.00812 0.00036 0.227 0.00033 0.209 9.9999e-06 0.00812 9.9999e-06 0.00812 0.78899 1 0.00244 1 1 1 0.0054699 1 del_1p36.11 168 (37%) 282 9.9999e-05 0.0652 0.0079799 1 9.9999e-06 0.00812 2e-05 0.0136 0.02206 1 0.01826 1 9.9999e-06 0.00812 9.9999e-06 0.00812 0.66355 1 0.02106 1 0.92068 1 0.25766 1 del_1p33 123 (27%) 327 0.01554 1 0.55975 1 9.9999e-06 0.00812 0.00019 0.122 0.82987 1 0.49413 1 0.00060999 0.37 9.9999e-05 0.0652 0.71685 1 0.1525 1 1 1 0.35127 1 del_1p13.1 119 (26%) 331 0.085249 1 0.54573 1 9.9999e-06 0.00812 0.01184 1 0.6786 1 0.89294 1 0.0081199 1 5e-04 0.31 0.79932 1 0.16617 1 0.95319 1 0.64335 1 del_1q43 54 (12%) 396 0.061569 1 0.50076 1 9.9999e-06 0.00812 0.03097 1 0.4727 1 0.7169 1 5e-04 0.31 5.9999e-05 0.0397 0.13943 1 0.00056999 0.348 0.02775 1 0.9613 1 del_2p21 17 (4%) 433 0.5927 1 0.86495 1 1 1 0.76484 1 0.8081 1 0.71391 1 0.16052 1 0.20743 1 0.092149 1 0.34713 1 NA NA NA NA del_2q22.1 24 (5%) 426 0.97304 1 0.53751 1 0.48151 1 0.72369 1 0.085839 1 0.36318 1 0.12056 1 0.31093 1 0.24929 1 0.16559 1 1 1 0.84866 1 del_3p26.2 72 (16%) 378 0.22085 1 0.23399 1 0.00053999 0.332 0.134 1 0.72889 1 0.50086 1 0.21218 1 0.054229 1 0.73897 1 0.78868 1 0.53572 1 0.41037 1 del_3p14.2 88 (20%) 362 0.55441 1 0.83541 1 0.04465 1 0.27382 1 0.5283 1 0.04127 1 0.096369 1 0.13507 1 0.65221 1 0.69858 1 0.12685 1 0.70627 1 del_3q26.31 46 (10%) 404 0.64167 1 0.53872 1 0.064549 1 0.66197 1 0.60135 1 0.83464 1 0.69621 1 0.15002 1 0.15717 1 0.81797 1 0.091809 1 0.70431 1 del_4p16.2 139 (31%) 311 0.00072999 0.438 0.00173 0.99 9.9999e-06 0.00812 0.00057999 0.354 0.02616 1 0.16037 1 0.00194 1 9.9999e-06 0.00812 0.35419 1 0.44716 1 0.14737 1 0.23459 1 del_4q22.1 151 (34%) 299 0.00036 0.227 0.0044 1 9.9999e-06 0.00812 5e-05 0.0334 0.10425 1 0.1547 1 0.00141 0.815 9.9999e-06 0.00812 0.39019 1 0.17283 1 0.31828 1 0.20555 1 del_4q35.1 159 (35%) 291 0.00119 0.697 0.0075999 1 9.9999e-06 0.00812 9.9999e-06 0.00812 0.01317 1 0.29656 1 0.00015 0.0964 9.9999e-06 0.00812 0.3625 1 0.41424 1 0.54813 1 0.91334 1 del_5q12.1 105 (23%) 345 0.00106 0.624 0.00355 1 9.9999e-06 0.00812 0.0107 1 0.00095999 0.567 0.03297 1 0.00028 0.178 5.9999e-05 0.0397 0.70452 1 0.56645 1 1 1 0.13914 1 del_5q21.1 127 (28%) 323 0.27578 1 0.04424 1 9.9999e-06 0.00812 0.01267 1 0.02474 1 0.39956 1 0.00122 0.711 2e-05 0.0136 0.94386 1 0.89011 1 0.87005 1 0.49685 1 del_5q22.2 130 (29%) 320 0.01425 1 0.0092399 1 9.9999e-06 0.00812 0.03163 1 0.04772 1 0.34254 1 0.00057999 0.354 2e-05 0.0136 0.9128 1 0.27693 1 0.61562 1 0.45463 1 del_6p25.3 56 (12%) 394 0.85029 1 0.73459 1 0.19738 1 0.03021 1 0.04161 1 0.57187 1 1 1 0.82671 1 0.66733 1 0.939 1 0.055159 1 0.04347 1 del_6q26 62 (14%) 388 0.58601 1 0.39977 1 0.6353 1 0.47689 1 0.082879 1 0.21991 1 0.16643 1 0.43104 1 0.69642 1 0.93787 1 0.44087 1 0.061309 1 del_7q31.1 13 (3%) 437 1 1 0.60096 1 0.089559 1 0.60089 1 0.16493 1 0.46498 1 0.38482 1 0.79227 1 0.79436 1 0.82949 1 NA NA NA NA del_8p23.3 189 (42%) 261 0.01209 1 0.00018 0.116 9.9999e-06 0.00812 2e-05 0.0136 0.00439 1 0.0082899 1 9.9999e-06 0.00812 9.9999e-06 0.00812 0.21877 1 0.051879 1 0.89172 1 0.04409 1 del_8p22 203 (45%) 247 0.00489 1 0.00014 0.0904 9.9999e-06 0.00812 9.9999e-06 0.00812 0.0074299 1 0.00115 0.676 9.9999e-06 0.00812 9.9999e-06 0.00812 0.45276 1 0.01456 1 0.76222 1 0.04844 1 del_8q11.1 30 (7%) 420 0.26083 1 0.096859 1 0.04668 1 0.62823 1 0.26818 1 0.16636 1 0.31785 1 0.01968 1 0.20045 1 0.2951 1 0.66241 1 0.89132 1 del_9p21.3 62 (14%) 388 0.45536 1 0.089329 1 0.00121 0.707 0.072899 1 0.82261 1 0.41017 1 0.15993 1 0.00279 1 0.61803 1 0.25829 1 0.20227 1 0.58152 1 del_10p15.3 80 (18%) 370 0.11499 1 0.10473 1 9.9999e-06 0.00812 0.00073999 0.443 0.02218 1 0.14059 1 0.00123 0.716 7.9999e-05 0.0526 0.45403 1 0.17747 1 0.52049 1 0.02179 1 del_10q21.1 98 (22%) 352 0.00356 1 0.02886 1 9.9999e-06 0.00812 0.0098199 1 0.069609 1 0.25943 1 0.0018 1 9.9999e-05 0.0652 0.75288 1 0.48962 1 0.75448 1 0.73213 1 del_10q23.31 109 (24%) 341 0.096899 1 0.062269 1 9.9999e-06 0.00812 0.00344 1 0.14566 1 0.46987 1 0.00044 0.274 8.9999e-05 0.0589 0.57993 1 0.13618 1 0.35017 1 0.39886 1 del_10q25.2 109 (24%) 341 0.12427 1 0.0173 1 9.9999e-06 0.00812 8.9999e-05 0.0589 0.0062599 1 0.087589 1 2e-05 0.0136 9.9999e-06 0.00812 0.96167 1 0.48601 1 0.52983 1 0.73798 1 del_12p13.2 60 (13%) 390 0.0092199 1 0.00316 1 9.9999e-06 0.00812 0.0079399 1 0.30817 1 0.91762 1 2e-05 0.0136 9.9999e-06 0.00812 0.79449 1 0.35384 1 0.22434 1 0.00218 1 del_14q31.1 150 (33%) 300 9.9999e-06 0.00812 7.9999e-05 0.0526 9.9999e-06 0.00812 2e-05 0.0136 0.00038 0.239 0.01884 1 9.9999e-06 0.00812 9.9999e-06 0.00812 0.27772 1 0.02075 1 0.26641 1 0.01458 1 del_15q11.2 177 (39%) 273 0.00042 0.262 0.00070999 0.428 9.9999e-06 0.00812 5e-04 0.31 0.0208 1 0.063789 1 9.9999e-06 0.00812 9.9999e-06 0.00812 0.9797 1 0.77867 1 0.25848 1 0.2702 1 del_15q15.2 172 (38%) 278 0.00158 0.908 0.00064999 0.393 9.9999e-06 0.00812 0.00041 0.257 0.0092699 1 0.02503 1 9.9999e-06 0.00812 9.9999e-06 0.00812 0.92294 1 0.55549 1 0.15411 1 0.16729 1 del_15q21.1 169 (38%) 281 0.01904 1 0.01485 1 9.9999e-06 0.00812 0.00091999 0.545 0.0094299 1 0.053739 1 9.9999e-06 0.00812 9.9999e-06 0.00812 0.88526 1 0.67705 1 0.13695 1 0.12886 1 del_15q22.33 161 (36%) 289 0.00032 0.203 0.00053999 0.332 9.9999e-06 0.00812 0.00024 0.153 0.074369 1 0.03205 1 9.9999e-06 0.00812 9.9999e-06 0.00812 0.78732 1 0.85311 1 0.10163 1 0.080219 1 del_16p13.3 56 (12%) 394 0.22832 1 0.061839 1 0.04274 1 0.058419 1 0.39295 1 0.51361 1 0.0419 1 0.084059 1 0.84778 1 0.70074 1 0.61666 1 1 1 del_16q23.1 61 (14%) 389 0.27016 1 0.0056599 1 0.24065 1 0.85189 1 0.14026 1 0.61422 1 0.62765 1 0.02972 1 0.52791 1 0.46328 1 0.72307 1 0.4813 1 del_17p12 254 (56%) 196 9.9999e-06 0.00812 9.9999e-06 0.00812 9.9999e-06 0.00812 9.9999e-06 0.00812 0.01222 1 0.00124 0.72 9.9999e-06 0.00812 9.9999e-06 0.00812 0.66807 1 0.02163 1 0.60393 1 0.00141 0.815 del_17q24.3 69 (15%) 381 0.095159 1 0.51507 1 0.00052999 0.326 0.02043 1 0.86742 1 0.17978 1 0.29588 1 0.03858 1 0.72353 1 0.97035 1 0.81028 1 0.43314 1 del_18p11.31 246 (55%) 204 9.9999e-06 0.00812 9.9999e-06 0.00812 9.9999e-06 0.00812 9.9999e-06 0.00812 0.00070999 0.428 0.01003 1 9.9999e-06 0.00812 9.9999e-06 0.00812 0.83367 1 0.01069 1 0.16003 1 0.00303 1 del_18q12.2 274 (61%) 176 9.9999e-06 0.00812 9.9999e-06 0.00812 9.9999e-06 0.00812 9.9999e-06 0.00812 0.004 1 0.00128 0.742 9.9999e-06 0.00812 9.9999e-06 0.00812 0.91635 1 0.02064 1 0.15213 1 0.0050299 1 del_18q21.2 287 (64%) 163 9.9999e-06 0.00812 9.9999e-06 0.00812 9.9999e-06 0.00812 9.9999e-06 0.00812 0.00071999 0.433 5e-04 0.31 9.9999e-06 0.00812 9.9999e-06 0.00812 0.38232 1 0.03513 1 0.092829 1 0.0077699 1 del_19p13.3 63 (14%) 387 0.13164 1 0.12489 1 4e-05 0.0268 0.11045 1 0.98141 1 0.21003 1 0.079369 1 0.00021 0.134 0.65412 1 0.0085299 1 0.48577 1 0.28349 1 del_20p12.1 86 (19%) 364 0.04921 1 0.02877 1 2e-05 0.0136 0.00080999 0.484 0.72749 1 0.1974 1 9.9999e-06 0.00812 2e-05 0.0136 0.10373 1 0.01056 1 0.80223 1 0.0475 1 del_21q11.2 141 (31%) 309 0.01586 1 0.069229 1 9.9999e-06 0.00812 0.051059 1 0.16114 1 0.82076 1 0.00063999 0.388 9.9999e-05 0.0652 0.93587 1 0.1258 1 0.6702 1 0.34983 1 del_22q13.32 160 (36%) 290 0.00052999 0.326 0.00024 0.153 9.9999e-06 0.00812 0.00066999 0.405 0.11267 1 0.19973 1 0.00021 0.134 9.9999e-06 0.00812 0.41742 1 0.79177 1 0.73194 1 0.54447 1