Clinical Features Time to Death AGE PRIMARY.SITE.OF.DISEASE NEOPLASM.DISEASESTAGE PATHOLOGY.T.STAGE PATHOLOGY.N.STAGE PATHOLOGY.M.STAGE GENDER HISTOLOGICAL.TYPE RADIATIONS.RADIATION.REGIMENINDICATION COMPLETENESS.OF.RESECTION NUMBER.OF.LYMPH.NODES RACE nCNV (%) nWild-Type logrank test_P logrank test_Q Wilcoxon-test_P Wilcoxon-test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Wilcoxon-test_P Wilcoxon-test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 49 (8%) 555 0.10433 1 0.83632 1 1 1 0.272 1 0.50025 1 0.25321 1 0.11196 1 0.45567 1 0.093689 1 0.53549 1 0.18693 1 0.04684 1 0.66786 1 1q gain 116 (19%) 488 0.40101 1 0.46078 1 0.3487 1 0.1187 1 0.03534 1 0.01762 1 0.052799 1 0.40801 1 0.18297 1 0.38464 1 0.29535 1 0.0011814 1 0.85662 1 2p gain 119 (20%) 485 0.40671 1 0.93432 1 0.049617 1 0.26343 1 0.51959 1 0.077119 1 0.19729 1 0.41285 1 0.00208 1 0.38977 1 0.02572 1 0.14156 1 0.84521 1 2q gain 117 (19%) 487 0.2331 1 0.5177 1 0.01049 1 0.19737 1 0.57922 1 0.03525 1 0.17575 1 0.3032 1 0.00061999 0.607 0.076048 1 0.33878 1 0.06521 1 0.327 1 3p gain 72 (12%) 532 0.42476 1 0.087488 1 0.032304 1 0.01813 1 0.9819 1 0.1658 1 0.00109 1 0.31487 1 0.096289 1 1 1 0.97336 1 0.081475 1 0.22779 1 3q gain 97 (16%) 507 0.23462 1 0.25335 1 0.045617 1 0.0397 1 0.89252 1 0.057379 1 0.00062999 0.616 0.31986 1 0.078959 1 0.64219 1 0.57381 1 0.058392 1 0.2733 1 4p gain 20 (3%) 584 0.88886 1 0.37766 1 0.075043 1 0.37093 1 0.372 1 0.77831 1 0.19937 1 0.17106 1 0.13297 1 1 1 0.67961 1 0.81882 1 0.15467 1 4q gain 21 (3%) 583 0.35541 1 0.63052 1 1 1 0.67387 1 0.96945 1 0.11616 1 0.22773 1 0.11833 1 0.43682 1 1 1 0.62012 1 0.09861 1 0.36475 1 5p gain 103 (17%) 501 0.55939 1 0.080817 1 0.051287 1 0.20786 1 0.44749 1 0.0167 1 0.33089 1 1 1 0.02659 1 0.18613 1 0.2321 1 0.012648 1 0.077199 1 5q gain 65 (11%) 539 0.47982 1 0.71779 1 0.074728 1 0.42069 1 0.25813 1 0.29832 1 0.41005 1 1 1 0.074989 1 1 1 0.36932 1 0.42038 1 0.21299 1 6p gain 122 (20%) 482 0.47878 1 0.43354 1 0.136 1 0.03931 1 0.47205 1 0.00044 0.435 0.14543 1 0.22405 1 0.16496 1 0.00029677 0.295 0.294 1 0.00090609 0.883 0.25454 1 6q gain 109 (18%) 495 0.51962 1 0.45474 1 0.23064 1 0.01475 1 0.59947 1 0.00214 1 0.0397 1 0.39853 1 0.069259 1 0.00013812 0.139 0.38433 1 0.00317 1 0.6976 1 7p gain 345 (57%) 259 0.66531 1 0.15048 1 0.094318 1 0.00022 0.22 0.91982 1 2e-05 0.0203 0.087889 1 0.68095 1 0.00077999 0.762 0.31281 1 0.37702 1 4.9424e-05 0.05 0.5037 1 7q gain 309 (51%) 295 0.89864 1 0.11646 1 0.5821 1 0.00018 0.18 0.64791 1 0.00053999 0.53 0.02736 1 0.68364 1 0.0067799 1 1 1 0.47817 1 0.0014452 1 0.20215 1 8p gain 167 (28%) 437 0.42131 1 0.3498 1 0.30716 1 0.57967 1 0.95149 1 0.31653 1 0.77248 1 0.92745 1 0.57514 1 0.71279 1 0.051149 1 0.30437 1 1 1 8q gain 310 (51%) 294 0.4433 1 0.10791 1 0.521 1 0.060419 1 0.24212 1 0.082599 1 0.03594 1 0.87053 1 0.04342 1 0.038258 1 0.02769 1 0.12233 1 0.87121 1 9p gain 120 (20%) 484 0.0081151 1 0.69701 1 0.029489 1 0.0095999 1 0.45823 1 0.21689 1 0.2682 1 0.7595 1 0.00402 1 1 1 0.38352 1 0.22329 1 0.067819 1 9q gain 101 (17%) 503 0.0080446 1 0.93149 1 0.26887 1 0.0398 1 0.4083 1 0.46173 1 0.41971 1 0.66254 1 0.02714 1 1 1 0.72868 1 0.5226 1 0.17051 1 10p gain 46 (8%) 558 0.035143 1 0.47778 1 0.73075 1 0.58083 1 0.13886 1 0.02342 1 0.46198 1 1 1 0.9267 1 0.51222 1 0.57543 1 0.10014 1 0.16556 1 10q gain 26 (4%) 578 0.64349 1 0.023707 1 0.82202 1 0.60702 1 0.40526 1 0.03681 1 0.38579 1 0.84155 1 0.76807 1 0.32881 1 0.82374 1 0.022027 1 0.04136 1 11p gain 83 (14%) 521 0.8066 1 0.0076315 1 0.022517 1 0.14541 1 0.17433 1 0.22113 1 0.13347 1 0.90585 1 4e-04 0.396 0.11357 1 0.53481 1 0.16249 1 0.51928 1 11q gain 75 (12%) 529 0.43772 1 8.3274e-05 0.0839 0.12593 1 0.21057 1 0.55141 1 0.21475 1 0.085479 1 1 1 0.00047 0.463 0.30983 1 0.7025 1 0.17123 1 0.49822 1 12p gain 127 (21%) 477 0.29487 1 0.15106 1 0.82245 1 0.18649 1 0.33719 1 0.16326 1 0.12743 1 0.92071 1 0.66518 1 0.40612 1 0.78277 1 0.14253 1 0.90362 1 12q gain 111 (18%) 493 0.58732 1 0.049893 1 0.19243 1 0.02298 1 0.48457 1 0.02757 1 0.0261 1 0.52997 1 0.30062 1 1 1 0.56374 1 0.01158 1 0.82627 1 13q gain 362 (60%) 242 0.77922 1 0.59646 1 0.014682 1 0.00123 1 0.7689 1 0.00027 0.269 0.01409 1 0.2804 1 9.9999e-06 0.0102 0.32708 1 0.087829 1 0.0013883 1 0.050329 1 14q gain 42 (7%) 562 0.39527 1 0.97724 1 0.28103 1 0.63912 1 0.94214 1 0.78049 1 0.01866 1 0.87365 1 0.21051 1 0.4796 1 0.67078 1 0.38162 1 0.01205 1 15q gain 15 (2%) 589 0.95914 1 0.3566 1 1 1 0.60302 1 0.078239 1 0.71994 1 0.18061 1 0.063178 1 0.078479 1 0.20377 1 0.704 1 0.41658 1 0.39294 1 16p gain 145 (24%) 459 0.27726 1 0.12266 1 0.82983 1 0.0123 1 0.98512 1 0.00144 1 0.34962 1 0.84913 1 0.00426 1 0.229 1 0.74544 1 0.0023612 1 0.4292 1 16q gain 143 (24%) 461 0.47586 1 0.083077 1 0.5891 1 0.00415 1 0.96511 1 0.00033 0.327 0.29751 1 0.84858 1 0.00377 1 0.22654 1 0.74722 1 0.0014832 1 0.42932 1 17p gain 36 (6%) 568 0.055869 1 0.76641 1 0.84909 1 0.57382 1 0.31074 1 0.89104 1 0.20213 1 1 1 0.88609 1 1 1 0.93533 1 0.69925 1 0.067839 1 17q gain 110 (18%) 494 0.10002 1 0.25819 1 1 1 0.40855 1 0.65013 1 0.55023 1 0.02332 1 0.91634 1 0.4574 1 1 1 0.16069 1 0.95815 1 0.77352 1 18p gain 33 (5%) 571 0.45532 1 0.51548 1 0.8413 1 0.01692 1 0.69731 1 0.01432 1 0.24327 1 0.15033 1 0.04385 1 0.39899 1 1 1 0.013266 1 0.81204 1 18q gain 20 (3%) 584 0.98034 1 0.13153 1 1 1 0.077629 1 0.47489 1 0.15407 1 0.69787 1 0.17106 1 0.079189 1 0.26296 1 0.73978 1 0.25049 1 0.17662 1 19p gain 102 (17%) 502 0.54812 1 0.72429 1 0.27318 1 0.88334 1 0.87563 1 0.26819 1 0.29637 1 0.2317 1 0.072349 1 1 1 0.29043 1 0.49885 1 0.79375 1 19q gain 111 (18%) 493 0.36248 1 0.6973 1 0.63686 1 0.8238 1 0.99682 1 0.24022 1 0.12013 1 0.46131 1 0.24953 1 1 1 0.41795 1 0.66071 1 0.59505 1 20p gain 347 (57%) 257 0.18365 1 0.56323 1 0.0068923 1 0.00022 0.22 0.55001 1 0.057049 1 0.00394 1 0.11795 1 2e-05 0.0203 0.31374 1 0.083439 1 0.028275 1 0.57878 1 20q gain 455 (75%) 149 0.50872 1 0.2241 1 1.2073e-06 0.00124 0.00031 0.308 0.29545 1 0.00050999 0.502 0.00428 1 0.25715 1 9.9999e-06 0.0102 0.4644 1 0.01805 1 0.0022603 1 0.13958 1 21q gain 32 (5%) 572 0.74896 1 0.012225 1 0.53404 1 0.68114 1 0.23293 1 0.60724 1 0.5132 1 0.72022 1 0.55699 1 1 1 0.82557 1 0.28458 1 0.80428 1 22q gain 23 (4%) 581 0.70083 1 0.31423 1 0.091228 1 0.60506 1 0.11717 1 0.25046 1 0.51348 1 0.8328 1 0.11272 1 0.29657 1 0.32811 1 0.11258 1 0.81556 1 xq gain 104 (17%) 500 0.84337 1 0.47777 1 0.62608 1 0.20408 1 0.59732 1 0.28279 1 0.41243 1 0.28067 1 0.28373 1 1 1 0.98548 1 0.42418 1 0.55615 1 1p loss 134 (22%) 470 0.31858 1 0.35307 1 0.097523 1 0.19241 1 0.84719 1 0.0060299 1 0.065639 1 0.49269 1 0.01715 1 0.42319 1 0.87853 1 0.0012641 1 0.33244 1 1q loss 77 (13%) 527 0.20561 1 0.19043 1 0.27155 1 0.54895 1 0.93126 1 0.16524 1 0.13264 1 0.088189 1 0.22955 1 0.32161 1 0.56711 1 0.091492 1 0.064309 1 2p loss 17 (3%) 587 0.86225 1 0.20636 1 0.0010724 1 0.64768 1 0.8811 1 0.79669 1 0.83237 1 0.80627 1 0.01073 1 0.22794 1 1 1 0.68739 1 0.1496 1 2q loss 14 (2%) 590 0.43745 1 0.50462 1 0.065713 1 0.32041 1 1 1 0.70473 1 0.32692 1 0.43168 1 0.30329 1 1 1 0.84514 1 0.44025 1 NA NA 3p loss 67 (11%) 537 0.10112 1 0.67803 1 0.30496 1 0.059739 1 0.03697 1 0.02717 1 0.02101 1 0.43645 1 0.067159 1 0.26283 1 0.18026 1 0.022354 1 0.35114 1 3q loss 43 (7%) 561 0.21612 1 0.53656 1 0.4737 1 0.17017 1 0.12962 1 0.38585 1 0.11134 1 0.20724 1 0.0073699 1 0.12957 1 0.48286 1 0.52681 1 0.33312 1 4p loss 188 (31%) 416 0.25117 1 0.94697 1 0.13597 1 0.01431 1 0.75188 1 0.00198 1 0.0054499 1 0.72547 1 0.01622 1 0.00052252 0.514 0.15001 1 0.00044864 0.443 0.80921 1 4q loss 182 (30%) 422 0.60936 1 0.50276 1 0.0064645 1 0.092949 1 0.64349 1 0.00455 1 0.19464 1 0.72256 1 0.0057199 1 0.00040598 0.402 0.94231 1 0.001964 1 0.72903 1 5p loss 82 (14%) 522 0.4478 1 0.42993 1 0.2278 1 0.01512 1 0.81787 1 0.02025 1 0.19127 1 0.55375 1 0.31469 1 0.023277 1 0.71339 1 0.016205 1 0.42778 1 5q loss 116 (19%) 488 0.067776 1 0.57193 1 0.027183 1 0.072449 1 0.64996 1 0.00421 1 0.065979 1 0.53496 1 0.0397 1 0.0022679 1 0.49386 1 0.0022548 1 0.39802 1 6p loss 45 (7%) 559 0.0045329 1 0.32884 1 0.86088 1 0.36174 1 0.53639 1 0.26521 1 0.4716 1 0.53873 1 0.14754 1 0.50424 1 0.052739 1 0.3524 1 0.0085199 1 6q loss 68 (11%) 536 0.027874 1 0.75606 1 0.37829 1 0.337 1 0.34051 1 0.11067 1 0.16237 1 0.2459 1 0.03963 1 1 1 0.19098 1 0.052993 1 0.00465 1 7q loss 4 (1%) 600 0.51151 1 0.96318 1 0.2956 1 0.63729 1 0.31086 1 1 1 1 1 0.34524 1 0.1419 1 1 1 1 1 0.29805 1 NA NA 8p loss 213 (35%) 391 0.68382 1 0.78744 1 0.0027623 1 0.03353 1 0.1668 1 0.00027 0.269 0.061689 1 0.10506 1 0.00293 1 0.29055 1 0.10961 1 7.6316e-05 0.0771 0.489 1 8q loss 35 (6%) 569 0.7918 1 0.90194 1 0.32907 1 0.35939 1 0.55955 1 0.25904 1 0.30453 1 0.013532 1 0.48037 1 1 1 0.61769 1 0.78172 1 0.071299 1 9p loss 74 (12%) 530 0.65851 1 0.20882 1 0.57371 1 0.76911 1 0.071829 1 0.32928 1 0.18297 1 0.17256 1 0.11217 1 1 1 0.04662 1 0.077833 1 0.80881 1 9q loss 74 (12%) 530 0.43165 1 0.037924 1 0.48065 1 0.51726 1 0.10338 1 0.29736 1 0.085329 1 0.53587 1 0.11452 1 1 1 0.053759 1 0.16473 1 0.77817 1 10p loss 100 (17%) 504 0.29298 1 0.0050083 1 0.13698 1 0.36947 1 0.8175 1 0.096679 1 0.36766 1 0.91276 1 0.02424 1 0.0081896 1 0.98549 1 0.019209 1 0.76165 1 10q loss 109 (18%) 495 0.27033 1 0.012415 1 0.072256 1 0.57677 1 0.98584 1 0.24216 1 0.64724 1 0.83291 1 0.01975 1 0.012001 1 1 1 0.10867 1 0.87596 1 11p loss 74 (12%) 530 0.61174 1 0.34002 1 0.39857 1 0.20286 1 0.3977 1 0.01995 1 0.03258 1 0.9015 1 0.22628 1 0.30394 1 0.9301 1 0.00041016 0.406 0.27025 1 11q loss 91 (15%) 513 0.22518 1 0.59109 1 0.36267 1 0.50509 1 0.71696 1 0.089549 1 0.20844 1 0.64876 1 0.13582 1 0.14084 1 0.98089 1 0.043244 1 0.18681 1 12p loss 70 (12%) 534 0.14486 1 0.57165 1 0.24827 1 0.52802 1 0.2575 1 0.04095 1 0.34363 1 0.79958 1 0.01217 1 0.07503 1 0.90496 1 0.046466 1 0.8634 1 12q loss 69 (11%) 535 0.24774 1 0.96449 1 0.66397 1 0.21025 1 0.4655 1 0.02826 1 0.2313 1 1 1 0.088109 1 0.27454 1 1 1 0.02113 1 0.33892 1 13q loss 20 (3%) 584 0.51715 1 0.91199 1 0.20204 1 0.62848 1 0.59155 1 0.068029 1 0.059869 1 1 1 0.03371 1 1 1 1 1 0.006998 1 0.0149 1 14q loss 201 (33%) 403 0.72385 1 0.24118 1 0.019077 1 0.4218 1 0.36636 1 0.04509 1 0.085949 1 0.60432 1 9.9999e-06 0.0102 1 1 0.94634 1 0.18616 1 0.98032 1 15q loss 222 (37%) 382 0.74649 1 0.40718 1 0.04476 1 0.03848 1 0.26491 1 0.0091899 1 0.058539 1 0.39941 1 0.0062799 1 0.014441 1 0.83211 1 0.0033211 1 0.10714 1 16p loss 40 (7%) 564 0.084479 1 0.21602 1 0.85533 1 0.12328 1 0.41662 1 0.33267 1 0.36839 1 0.51348 1 0.53401 1 1 1 0.14853 1 0.4283 1 0.24011 1 16q loss 42 (7%) 562 0.28733 1 0.11308 1 0.36801 1 0.38022 1 0.76931 1 0.17254 1 0.33716 1 0.74921 1 0.63516 1 0.4796 1 0.3905 1 0.47608 1 0.18501 1 17p loss 334 (55%) 270 0.16824 1 0.26444 1 0.020711 1 0.00356 1 0.44268 1 0.00086999 0.849 0.01986 1 0.25094 1 9.9999e-06 0.0102 0.31131 1 0.077719 1 0.00019996 0.2 0.65429 1 17q loss 93 (15%) 511 0.04353 1 0.89884 1 0.44443 1 0.04471 1 0.063519 1 0.01293 1 0.065089 1 0.43152 1 0.79207 1 0.63453 1 0.60083 1 0.0004755 0.468 0.1514 1 18p loss 372 (62%) 232 0.82045 1 0.016673 1 4.5429e-07 0.000465 0.00014 0.14 0.82797 1 0.00319 1 0.00012 0.12 0.61524 1 9.9999e-06 0.0102 0.16382 1 0.02366 1 0.0014053 1 0.77251 1 18q loss 401 (66%) 203 0.97608 1 0.010853 1 1.1416e-08 1.17e-05 3e-05 0.0304 0.42122 1 7.9999e-05 0.0806 8.9999e-05 0.0905 0.54585 1 9.9999e-06 0.0102 0.28471 1 0.02239 1 7.9475e-05 0.0802 0.56592 1 19p loss 63 (10%) 541 0.041515 1 0.25466 1 0.13044 1 0.00272 1 0.79704 1 0.00053999 0.53 0.01118 1 0.8949 1 0.14327 1 0.23956 1 0.47674 1 3.7155e-06 0.0038 1 1 19q loss 55 (9%) 549 0.18988 1 0.60571 1 0.19758 1 0.03272 1 0.77704 1 0.00426 1 0.12755 1 0.39652 1 0.23138 1 0.19395 1 0.83248 1 0.00061373 0.601 0.14224 1 20p loss 65 (11%) 539 0.73396 1 0.5111 1 0.17994 1 0.53816 1 0.44212 1 0.48855 1 0.86019 1 0.51365 1 0.37159 1 0.60747 1 0.57944 1 0.87693 1 0.59194 1 20q loss 6 (1%) 598 0.39869 1 0.1678 1 0.19822 1 0.65273 1 0.71727 1 0.72946 1 0.82281 1 1 1 0.35421 1 1 1 1 1 0.685 1 0.24372 1 21q loss 190 (31%) 414 0.95318 1 0.4635 1 0.0020963 1 0.499 1 0.92139 1 0.01856 1 0.70673 1 0.66072 1 0.00027 0.269 0.47265 1 0.668 1 0.0038886 1 0.43144 1 22q loss 196 (32%) 408 0.021761 1 0.78187 1 0.62378 1 0.0079699 1 0.28885 1 4e-05 0.0405 0.01685 1 0.79404 1 0.01961 1 0.48122 1 0.39782 1 0.00011427 0.115 0.53738 1 xq loss 77 (13%) 527 0.7253 1 0.82039 1 0.096188 1 0.30655 1 0.83827 1 0.2045 1 0.066109 1 1 1 0.11269 1 1 1 0.42884 1 0.10756 1 0.53745 1