		Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1q gain	6 (12%)	42	0.19664	1	0.66617	1	1	1	0.64069	1	0.41608	1	0.31453	1	1	1	0.84367	1
2p gain	6 (12%)	42	0.66904	1	0.66617	1	1	1	NA	NA	1	1	0.60795	1	1	1	0.21997	1
2q gain	6 (12%)	42	0.66904	1	0.66617	1	1	1	NA	NA	1	1	0.60381	1	1	1	0.22348	1
3p gain	10 (21%)	38	0.036327	1	0.28647	1	1	1	0.67744	1	0.63527	1	0.40209	1	0.7075	1	0.34849	1
3q gain	13 (27%)	35	0.018751	1	0.19302	1	1	1	0.51575	1	0.76721	1	0.5656	1	1	1	0.24867	1
5p gain	7 (15%)	41	0.68742	1	1	1	1	1	NA	NA	0.33923	1	0.63732	1	0.3558	1	0.11809	1
5q gain	6 (12%)	42	1	1	1	1	0.46429	1	NA	NA	0.65955	1	0.79639	1	0.61348	1	0.53468	1
6p gain	6 (12%)	42	0.19664	1	1	1	1	1	1	1	1	1	0.86298	1	0.644	1	0.88104	1
6q gain	4 (8%)	44	0.01992	1	0.60851	1	1	1	NA	NA	0.71126	1	1	1	0.084408	1	0.87367	1
7p gain	15 (31%)	33	1.0388e-05	0.00379	0.53433	1	1	1	0.45897	1	0.92452	1	0.88658	1	1	1	0.12427	1
7q gain	13 (27%)	35	7.7147e-06	0.00282	1	1	0.67029	1	0.12167	1	0.66313	1	0.9875	1	1	1	0.38228	1
8p gain	7 (15%)	41	0.68742	1	0.4158	1	0.20635	1	NA	NA	0.10226	1	0.0055399	1	0.42751	1	0.25677	1
8q gain	8 (17%)	40	0.45109	1	0.24482	1	0.20635	1	NA	NA	0.14763	1	0.02786	1	0.42751	1	0.25783	1
9p gain	7 (15%)	41	0.68742	1	1	1	1	1	NA	NA	0.77595	1	0.63778	1	1	1	0.46624	1
9q gain	7 (15%)	41	0.68742	1	1	1	1	1	NA	NA	0.4813	1	0.29213	1	1	1	0.26625	1
10p gain	4 (8%)	44	0.01992	1	1	1	1	1	NA	NA	1	1	1	1	0.58127	1	0.63833	1
10q gain	4 (8%)	44	0.2864	1	0.60851	1	0.46429	1	NA	NA	0.42363	1	0.77979	1	0.084408	1	0.25933	1
11p gain	9 (19%)	39	0.45109	1	0.4614	1	0.6	1	0.14675	1	0.71657	1	0.1638	1	0.43296	1	0.22735	1
11q gain	13 (27%)	35	0.09594	1	0.19302	1	0.68599	1	0.087589	1	0.44985	1	0.073949	1	0.46818	1	0.39636	1
12p gain	7 (15%)	41	1	1	0.4158	1	0.58333	1	0.11072	1	0.81664	1	0.27044	1	0.38421	1	0.86239	1
12q gain	9 (19%)	39	1	1	0.13653	1	1	1	0.14718	1	0.64867	1	0.13799	1	0.43296	1	0.48751	1
13q gain	5 (10%)	43	1	1	1	1	0.20635	1	NA	NA	0.13394	1	0.66063	1	0.034629	1	0.83909	1
16p gain	7 (15%)	41	0.011371	1	0.4158	1	0.6	1	0.20752	1	0.32715	1	0.02942	1	0.38421	1	0.51333	1
16q gain	7 (15%)	41	0.096687	1	0.097147	1	0.6	1	1	1	0.32738	1	0.01485	1	0.38421	1	0.70799	1
17q gain	3 (6%)	45	0.554	1	0.23404	1	0.46429	1	NA	NA	0.60698	1	0.03572	1	0.58127	1	0.49779	1
18p gain	13 (27%)	35	0.09594	1	1	1	1	1	0.67699	1	0.35917	1	0.12113	1	0.50379	1	0.52264	1
18q gain	14 (29%)	34	0.049144	1	1	1	0.65459	1	1	1	0.45362	1	0.11389	1	0.32267	1	0.4052	1
19p gain	3 (6%)	45	0.554	1	1	1	0.46429	1	NA	NA	0.68401	1	0.69223	1	0.45238	1	NA	NA
19q gain	3 (6%)	45	0.554	1	1	1	0.46429	1	NA	NA	0.69025	1	0.68845	1	0.45238	1	NA	NA
20p gain	5 (10%)	43	0.37155	1	0.34752	1	1	1	NA	NA	0.28888	1	0.37449	1	1	1	0.70307	1
20q gain	4 (8%)	44	1	1	0.60851	1	0.46429	1	NA	NA	0.65546	1	0.81721	1	0.58127	1	0.29999	1
21q gain	10 (21%)	38	1	1	1	1	1	1	0.4256	1	0.02744	1	0.18567	1	0.25849	1	0.37051	1
xq gain	6 (12%)	42	0.02969	1	0.18819	1	1	1	0.38366	1	0.52124	1	0.21933	1	0.15802	1	0.1052	1
1p loss	3 (6%)	45	0.554	1	1	1	1	1	1	1	1	1	0.84749	1	1	1	NA	NA
3p loss	5 (10%)	43	1	1	1	1	1	1	NA	NA	0.85571	1	0.95927	1	1	1	0.66376	1
3q loss	4 (8%)	44	1	1	1	1	1	1	NA	NA	1	1	1	1	0.58127	1	0.52387	1
4p loss	3 (6%)	45	0.554	1	1	1	0.46429	1	NA	NA	0.15325	1	0.68752	1	1	1	NA	NA
4q loss	4 (8%)	44	0.2864	1	0.60851	1	1	1	NA	NA	0.46607	1	0.23246	1	0.61348	1	0.87559	1
6q loss	7 (15%)	41	1	1	0.4158	1	1	1	0.38674	1	0.70823	1	0.72431	1	0.075398	1	0.51312	1
8p loss	8 (17%)	40	0.044639	1	1	1	0.31111	1	0.35475	1	0.19798	1	0.0253	1	1	1	0.9342	1
8q loss	4 (8%)	44	0.2864	1	1	1	1	1	NA	NA	0.65673	1	0.15553	1	1	1	NA	NA
13q loss	3 (6%)	45	0.554	1	1	1	1	1	NA	NA	1	1	0.84839	1	1	1	NA	NA
15q loss	7 (15%)	41	0.011371	1	0.4158	1	0.63889	1	0.45153	1	0.12565	1	0.37078	1	0.19727	1	0.74549	1
16q loss	4 (8%)	44	0.01992	1	1	1	1	1	0.639	1	0.095439	1	0.12697	1	0.23868	1	0.66226	1
17p loss	9 (19%)	39	0.019532	1	1	1	1	1	0.76306	1	0.88702	1	0.50212	1	0.38421	1	0.27004	1
17q loss	4 (8%)	44	0.2864	1	0.60851	1	1	1	NA	NA	0.71205	1	0.48896	1	0.084408	1	0.46302	1
18p loss	5 (10%)	43	0.37155	1	0.34752	1	0.48413	1	NA	NA	0.55462	1	0.24943	1	0.15802	1	0.21613	1
18q loss	4 (8%)	44	0.2864	1	0.60851	1	1	1	NA	NA	0.65392	1	1	1	0.58127	1	0.52443	1
22q loss	3 (6%)	45	0.056025	1	1	1	1	1	NA	NA	1	1	0.43756	1	1	1	NA	NA
xq loss	5 (10%)	43	0.37155	1	0.34752	1	0.58333	1	0.56568	1	0.33282	1	0.01388	1	0.3558	1	0.28605	1
