Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q24.2	16 (33%)	32	0.0052411	1	1	1	0.40966	1	0.22576	1	0.77609	1	0.45761	1	1	1	1	1
amp_2p16.1	16 (33%)	32	0.12369	1	0.00050861	0.158	0.68599	1	0.75023	1	0.057449	1	0.01258	1	0.33488	1	0.46877	1
amp_3q27.3	14 (29%)	34	0.0079998	1	0.34116	1	0.39553	1	0.72005	1	0.71015	1	0.29063	1	0.51593	1	0.37267	1
amp_3q29	15 (31%)	33	0.0032397	0.998	0.21238	1	0.65459	1	1	1	0.87996	1	0.29634	1	1	1	0.20433	1
amp_5p13.1	8 (17%)	40	1	1	0.70078	1	1	1	NA	NA	0.45061	1	0.59111	1	0.67286	1	0.18695	1
amp_7p22.3	16 (33%)	32	7.6208e-05	0.0238	0.35872	1	1	1	0.65232	1	0.92385	1	0.88679	1	1	1	0.12406	1
amp_7q21.3	15 (31%)	33	1.0388e-05	0.00325	1	1	0.67029	1	0.12069	1	0.51292	1	0.88795	1	0.74221	1	0.43998	1
amp_8q24.23	14 (29%)	34	1	1	0.75164	1	0.63889	1	0.67579	1	0.49007	1	0.19721	1	0.72578	1	0.34428	1
amp_12q21.1	14 (29%)	34	0.51711	1	0.024301	1	1	1	0.12321	1	0.67974	1	0.072509	1	0.32267	1	0.72898	1
amp_16p12.2	10 (21%)	38	0.0081776	1	0.072265	1	0.17271	1	0.34206	1	0.069299	1	0.0479	1	1	1	0.61572	1
amp_18q21.2	16 (33%)	32	0.030584	1	0.76011	1	0.65459	1	1	1	0.21476	1	0.02964	1	0.33488	1	0.11157	1
amp_19q13.43	10 (21%)	38	1	1	0.28647	1	0.58333	1	1	1	0.26865	1	0.27845	1	0.70921	1	0.055129	1
amp_xq27.3	7 (15%)	41	0.096687	1	0.097147	1	0.65459	1	0.70429	1	0.32784	1	0.081169	1	0.68195	1	0.32775	1
del_1p36.32	11 (23%)	37	0.015536	1	1	1	1	1	0.51771	1	0.55386	1	0.70308	1	1	1	0.4402	1
del_1p13.1	12 (25%)	36	0.50071	1	0.73997	1	0.67029	1	0.27543	1	0.55971	1	0.76327	1	1	1	0.57691	1
del_1q43	10 (21%)	38	0.036327	1	0.72379	1	1	1	1	1	0.71681	1	0.84105	1	1	1	0.61246	1
del_2q23.1	8 (17%)	40	0.23582	1	1	1	1	1	0.51578	1	0.77922	1	0.52643	1	0.67286	1	0.61951	1
del_3p21.31	8 (17%)	40	0.45109	1	0.70078	1	0.48413	1	NA	NA	0.23386	1	0.77519	1	0.21423	1	0.44431	1
del_4q35.1	10 (21%)	38	0.48728	1	0.72379	1	0.63889	1	0.54395	1	0.34938	1	0.1533	1	0.14944	1	0.37098	1
del_5q33.3	4 (8%)	44	0.2864	1	0.60851	1	1	1	0.03303	1	0.25527	1	0.0075599	1	0.31286	1	0.74154	1
del_6p21.32	6 (12%)	42	1	1	1	1	0.58333	1	0.76108	1	0.69861	1	0.52212	1	0.644	1	0.32506	1
del_6q14.1	17 (35%)	31	0.22054	1	0.54687	1	0.43478	1	0.32545	1	0.19453	1	0.17773	1	0.0032121	0.993	0.1208	1
del_6q22.32	16 (33%)	32	0.75898	1	0.030477	1	0.39553	1	0.38863	1	0.37041	1	0.36778	1	0.049374	1	0.10696	1
del_6q23.3	16 (33%)	32	1	1	0.030477	1	0.083575	1	0.02214	1	0.17442	1	0.16797	1	0.023061	1	0.25796	1
del_7q33	5 (10%)	43	0.37155	1	1	1	0.46429	1	NA	NA	0.43113	1	0.17985	1	0.644	1	0.34592	1
del_8p23.2	12 (25%)	36	0.0061605	1	0.73997	1	0.31111	1	0.3541	1	0.60118	1	0.081099	1	0.7075	1	0.9279	1
del_8q12.1	9 (19%)	39	0.12727	1	0.4614	1	0.31111	1	0.35738	1	0.49793	1	0.40717	1	1	1	0.57563	1
del_9p21.3	17 (35%)	31	0.22054	1	0.014547	1	0.11449	1	0.32796	1	0.0094399	1	0.02973	1	0.054685	1	0.10806	1
del_10q23.31	8 (17%)	40	0.23582	1	1	1	0.63889	1	0.03809	1	0.062659	1	0.67783	1	0.42751	1	0.02313	1
del_12p13.2	8 (17%)	40	0.044639	1	0.70078	1	1	1	1	1	0.66203	1	0.95572	1	1	1	0.84483	1
del_13q14.2	7 (15%)	41	0.096687	1	0.4158	1	1	1	0.76248	1	0.19032	1	0.24865	1	1	1	0.65207	1
del_15q21.1	13 (27%)	35	0.74131	1	0.51708	1	1	1	0.6525	1	0.49043	1	0.66557	1	0.72578	1	0.33254	1
del_16p13.13	6 (12%)	42	0.19664	1	0.66617	1	0.31111	1	0.81	1	0.32685	1	0.02815	1	0.61348	1	0.62986	1
del_16q23.1	5 (10%)	43	0.072436	1	1	1	0.63889	1	0.44839	1	0.091529	1	0.16496	1	0.11374	1	0.76107	1
del_17p13.1	13 (27%)	35	0.0022681	0.703	0.51708	1	1	1	1	1	0.64804	1	0.50923	1	1	1	0.61278	1
del_17q24.1	8 (17%)	40	0.23582	1	0.047924	1	1	1	0.04366	1	0.63661	1	0.02888	1	0.21423	1	0.14874	1
del_19p13.2	4 (8%)	44	1	1	1	1	0.48413	1	NA	NA	1	1	0.42663	1	1	1	0.66275	1
del_19q13.2	5 (10%)	43	1	1	0.34752	1	0.48413	1	NA	NA	1	1	0.65988	1	0.58127	1	0.72301	1
del_22q13.31	7 (15%)	41	0.096687	1	1	1	1	1	1	1	0.94698	1	0.90602	1	1	1	0.61937	1
del_xq28	3 (6%)	45	0.056025	1	0.23404	1	0.46429	1	NA	NA	0.47393	1	0.44071	1	1	1	NA	NA