This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 80 arm-level events and 10 molecular subtypes across 577 patients, 113 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'CN_CNMF'.
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1q gain cnv correlated to 'CN_CNMF'.
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3p gain cnv correlated to 'CN_CNMF'.
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3q gain cnv correlated to 'CN_CNMF'.
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5p gain cnv correlated to 'CN_CNMF'.
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5q gain cnv correlated to 'CN_CNMF'.
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7p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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7q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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8p gain cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
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8q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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9p gain cnv correlated to 'CN_CNMF'.
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9q gain cnv correlated to 'CN_CNMF'.
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10p gain cnv correlated to 'MRNA_CHIERARCHICAL' and 'METHLYATION_CNMF'.
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12p gain cnv correlated to 'CN_CNMF'.
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15q gain cnv correlated to 'CN_CNMF'.
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16p gain cnv correlated to 'CN_CNMF'.
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16q gain cnv correlated to 'CN_CNMF'.
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17p gain cnv correlated to 'CN_CNMF'.
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17q gain cnv correlated to 'CN_CNMF'.
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18p gain cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
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18q gain cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
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19p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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19q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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20p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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20q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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21q gain cnv correlated to 'CN_CNMF'.
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22q gain cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
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2p loss cnv correlated to 'CN_CNMF'.
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2q loss cnv correlated to 'CN_CNMF'.
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3p loss cnv correlated to 'CN_CNMF'.
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3q loss cnv correlated to 'CN_CNMF'.
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4q loss cnv correlated to 'CN_CNMF'.
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5p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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5q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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6p loss cnv correlated to 'CN_CNMF'.
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6q loss cnv correlated to 'CN_CNMF'.
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10p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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10q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
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11p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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11q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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12q loss cnv correlated to 'CN_CNMF'.
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13q loss cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
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14q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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15q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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17p loss cnv correlated to 'CN_CNMF'.
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17q loss cnv correlated to 'CN_CNMF'.
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18p loss cnv correlated to 'CN_CNMF'.
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18q loss cnv correlated to 'CN_CNMF'.
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19p loss cnv correlated to 'METHLYATION_CNMF'.
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20p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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20q loss cnv correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.
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22q loss cnv correlated to 'CN_CNMF'.
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xq loss cnv correlated to 'CN_CNMF'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
MIR CNMF |
MIR CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
7p gain | 468 (81%) | 109 |
1e-05 (0.00784) |
1e-05 (0.00784) |
0.00029 (0.196) |
1e-05 (0.00784) |
1e-05 (0.00784) |
1e-05 (0.00784) |
0.00189 (1.00) |
0.00285 (1.00) |
0.0153 (1.00) |
7e-05 (0.0486) |
19p gain | 226 (39%) | 351 |
1e-05 (0.00784) |
2e-05 (0.0144) |
0.0904 (1.00) |
0.0003 (0.202) |
1e-05 (0.00784) |
1e-05 (0.00784) |
0.00916 (1.00) |
1e-05 (0.00784) |
0.188 (1.00) |
0.655 (1.00) |
10q loss | 494 (86%) | 83 |
1e-05 (0.00784) |
1e-05 (0.00784) |
0.00612 (1.00) |
0.00011 (0.0756) |
1e-05 (0.00784) |
5e-05 (0.0351) |
7e-05 (0.0486) |
0.00429 (1.00) |
0.26 (1.00) |
0.0218 (1.00) |
7q gain | 474 (82%) | 103 |
2e-05 (0.0144) |
1e-05 (0.00784) |
0.00146 (0.936) |
0.00017 (0.115) |
1e-05 (0.00784) |
4e-05 (0.0282) |
0.105 (1.00) |
0.0447 (1.00) |
0.0545 (1.00) |
0.00143 (0.919) |
20p gain | 222 (38%) | 355 |
1e-05 (0.00784) |
1e-05 (0.00784) |
0.00432 (1.00) |
1e-05 (0.00784) |
2e-05 (0.0144) |
9e-05 (0.0619) |
0.0539 (1.00) |
0.00185 (1.00) |
0.794 (1.00) |
0.118 (1.00) |
20q gain | 220 (38%) | 357 |
1e-05 (0.00784) |
1e-05 (0.00784) |
0.0032 (1.00) |
1e-05 (0.00784) |
1e-05 (0.00784) |
7e-05 (0.0486) |
0.0343 (1.00) |
0.0009 (0.59) |
0.795 (1.00) |
0.119 (1.00) |
10p loss | 483 (84%) | 94 |
1e-05 (0.00784) |
1e-05 (0.00784) |
0.0104 (1.00) |
7e-05 (0.0486) |
1e-05 (0.00784) |
1e-05 (0.00784) |
0.00232 (1.00) |
0.0274 (1.00) |
0.223 (1.00) |
0.0128 (1.00) |
19q gain | 199 (34%) | 378 |
1e-05 (0.00784) |
1e-05 (0.00784) |
0.143 (1.00) |
0.0033 (1.00) |
1e-05 (0.00784) |
1e-05 (0.00784) |
0.0461 (1.00) |
0.001 (0.651) |
0.0629 (1.00) |
0.343 (1.00) |
5p loss | 43 (7%) | 534 |
3e-05 (0.0213) |
2e-05 (0.0144) |
0.00193 (1.00) |
0.0967 (1.00) |
6e-05 (0.0419) |
3e-05 (0.0213) |
0.94 (1.00) |
0.546 (1.00) |
0.343 (1.00) |
0.0516 (1.00) |
5q loss | 44 (8%) | 533 |
4e-05 (0.0282) |
4e-05 (0.0282) |
0.00086 (0.565) |
0.188 (1.00) |
5e-05 (0.0351) |
1e-05 (0.00784) |
0.943 (1.00) |
0.625 (1.00) |
0.223 (1.00) |
0.043 (1.00) |
8q gain | 59 (10%) | 518 |
1e-05 (0.00784) |
1e-05 (0.00784) |
0.0402 (1.00) |
0.455 (1.00) |
1e-05 (0.00784) |
0.00048 (0.322) |
0.434 (1.00) |
0.758 (1.00) |
0.123 (1.00) |
0.511 (1.00) |
11p loss | 99 (17%) | 478 |
1e-05 (0.00784) |
1e-05 (0.00784) |
0.831 (1.00) |
0.014 (1.00) |
1e-05 (0.00784) |
0.00283 (1.00) |
0.729 (1.00) |
0.159 (1.00) |
0.093 (1.00) |
0.0867 (1.00) |
11q loss | 93 (16%) | 484 |
2e-05 (0.0144) |
0.00014 (0.0953) |
0.934 (1.00) |
0.0602 (1.00) |
1e-05 (0.00784) |
0.416 (1.00) |
0.936 (1.00) |
0.568 (1.00) |
0.343 (1.00) |
0.536 (1.00) |
14q loss | 146 (25%) | 431 |
1e-05 (0.00784) |
0.00016 (0.109) |
0.512 (1.00) |
0.539 (1.00) |
1e-05 (0.00784) |
0.0248 (1.00) |
0.813 (1.00) |
0.0922 (1.00) |
0.166 (1.00) |
0.701 (1.00) |
15q loss | 106 (18%) | 471 |
2e-05 (0.0144) |
1e-05 (0.00784) |
0.00385 (1.00) |
0.00382 (1.00) |
1e-05 (0.00784) |
0.0755 (1.00) |
0.0321 (1.00) |
0.0115 (1.00) |
0.00356 (1.00) |
0.0234 (1.00) |
20p loss | 19 (3%) | 558 |
0.00013 (0.0888) |
5e-05 (0.0351) |
0.0366 (1.00) |
0.0937 (1.00) |
1e-05 (0.00784) |
0.308 (1.00) |
0.413 (1.00) |
0.456 (1.00) |
0.0104 (1.00) |
0.00206 (1.00) |
8p gain | 52 (9%) | 525 |
2e-05 (0.0144) |
0.00065 (0.43) |
0.0637 (1.00) |
0.559 (1.00) |
1e-05 (0.00784) |
0.00409 (1.00) |
0.436 (1.00) |
0.755 (1.00) |
0.139 (1.00) |
0.676 (1.00) |
10p gain | 13 (2%) | 564 |
0.00092 (0.603) |
0.00011 (0.0756) |
0.117 (1.00) |
0.0586 (1.00) |
0.00103 (0.669) |
0.00036 (0.242) |
0.308 (1.00) |
0.561 (1.00) |
||
18p gain | 58 (10%) | 519 |
1e-05 (0.00784) |
0.00047 (0.315) |
0.157 (1.00) |
0.365 (1.00) |
1e-05 (0.00784) |
0.00485 (1.00) |
0.422 (1.00) |
0.149 (1.00) |
0.0183 (1.00) |
0.0964 (1.00) |
18q gain | 58 (10%) | 519 |
1e-05 (0.00784) |
0.00072 (0.475) |
0.157 (1.00) |
0.431 (1.00) |
1e-05 (0.00784) |
0.00557 (1.00) |
0.692 (1.00) |
0.479 (1.00) |
0.0184 (1.00) |
0.114 (1.00) |
22q gain | 34 (6%) | 543 |
2e-05 (0.0144) |
0.00329 (1.00) |
0.469 (1.00) |
0.218 (1.00) |
7e-05 (0.0486) |
0.143 (1.00) |
0.214 (1.00) |
0.0353 (1.00) |
0.246 (1.00) |
0.194 (1.00) |
13q loss | 186 (32%) | 391 |
2e-05 (0.0144) |
0.00137 (0.884) |
0.751 (1.00) |
0.588 (1.00) |
1e-05 (0.00784) |
0.011 (1.00) |
0.594 (1.00) |
0.017 (1.00) |
0.0492 (1.00) |
0.4 (1.00) |
20q loss | 17 (3%) | 560 |
0.00145 (0.931) |
0.00012 (0.0822) |
0.365 (1.00) |
0.266 (1.00) |
1e-05 (0.00784) |
0.309 (1.00) |
0.415 (1.00) |
0.459 (1.00) |
0.0395 (1.00) |
0.0117 (1.00) |
1p gain | 82 (14%) | 495 |
0.603 (1.00) |
0.13 (1.00) |
0.487 (1.00) |
0.251 (1.00) |
1e-05 (0.00784) |
0.827 (1.00) |
0.501 (1.00) |
0.0845 (1.00) |
0.34 (1.00) |
0.273 (1.00) |
1q gain | 89 (15%) | 488 |
0.0781 (1.00) |
0.0887 (1.00) |
0.132 (1.00) |
0.628 (1.00) |
1e-05 (0.00784) |
0.528 (1.00) |
0.582 (1.00) |
0.258 (1.00) |
0.826 (1.00) |
0.506 (1.00) |
3p gain | 58 (10%) | 519 |
0.00063 (0.418) |
0.0289 (1.00) |
0.668 (1.00) |
0.0267 (1.00) |
1e-05 (0.00784) |
0.13 (1.00) |
0.637 (1.00) |
0.342 (1.00) |
0.815 (1.00) |
0.255 (1.00) |
3q gain | 64 (11%) | 513 |
0.00062 (0.412) |
0.0618 (1.00) |
0.899 (1.00) |
0.064 (1.00) |
1e-05 (0.00784) |
0.0658 (1.00) |
0.714 (1.00) |
0.203 (1.00) |
0.516 (1.00) |
0.15 (1.00) |
5p gain | 49 (8%) | 528 |
0.114 (1.00) |
0.157 (1.00) |
0.178 (1.00) |
0.345 (1.00) |
5e-05 (0.0351) |
0.233 (1.00) |
0.28 (1.00) |
0.531 (1.00) |
0.128 (1.00) |
0.227 (1.00) |
5q gain | 41 (7%) | 536 |
0.141 (1.00) |
0.234 (1.00) |
0.116 (1.00) |
0.0549 (1.00) |
0.00014 (0.0953) |
0.117 (1.00) |
0.39 (1.00) |
0.296 (1.00) |
0.169 (1.00) |
0.405 (1.00) |
9p gain | 47 (8%) | 530 |
0.00359 (1.00) |
0.0313 (1.00) |
0.702 (1.00) |
0.432 (1.00) |
2e-05 (0.0144) |
0.545 (1.00) |
0.8 (1.00) |
0.367 (1.00) |
0.429 (1.00) |
0.113 (1.00) |
9q gain | 71 (12%) | 506 |
0.0802 (1.00) |
0.0709 (1.00) |
0.578 (1.00) |
0.167 (1.00) |
3e-05 (0.0213) |
0.198 (1.00) |
0.318 (1.00) |
0.387 (1.00) |
0.67 (1.00) |
0.0774 (1.00) |
12p gain | 60 (10%) | 517 |
0.67 (1.00) |
0.793 (1.00) |
0.641 (1.00) |
0.164 (1.00) |
8e-05 (0.0551) |
0.9 (1.00) |
0.236 (1.00) |
0.662 (1.00) |
0.00392 (1.00) |
0.0752 (1.00) |
15q gain | 24 (4%) | 553 |
0.0609 (1.00) |
0.108 (1.00) |
0.566 (1.00) |
0.133 (1.00) |
6e-05 (0.0419) |
0.279 (1.00) |
0.534 (1.00) |
0.339 (1.00) |
0.0343 (1.00) |
0.387 (1.00) |
16p gain | 38 (7%) | 539 |
0.00826 (1.00) |
0.0659 (1.00) |
0.412 (1.00) |
0.273 (1.00) |
1e-05 (0.00784) |
0.0312 (1.00) |
0.612 (1.00) |
0.474 (1.00) |
1 (1.00) |
1 (1.00) |
16q gain | 37 (6%) | 540 |
0.0182 (1.00) |
0.00581 (1.00) |
0.358 (1.00) |
0.0664 (1.00) |
6e-05 (0.0419) |
0.026 (1.00) |
0.758 (1.00) |
0.418 (1.00) |
0.419 (1.00) |
0.736 (1.00) |
17p gain | 48 (8%) | 529 |
0.00048 (0.322) |
0.0204 (1.00) |
0.0783 (1.00) |
0.04 (1.00) |
5e-05 (0.0351) |
0.0327 (1.00) |
0.149 (1.00) |
0.238 (1.00) |
0.336 (1.00) |
0.39 (1.00) |
17q gain | 60 (10%) | 517 |
0.00112 (0.726) |
0.0451 (1.00) |
0.129 (1.00) |
0.0703 (1.00) |
1e-05 (0.00784) |
0.0379 (1.00) |
0.088 (1.00) |
0.108 (1.00) |
0.945 (1.00) |
0.615 (1.00) |
21q gain | 64 (11%) | 513 |
0.00121 (0.783) |
0.00736 (1.00) |
0.0108 (1.00) |
0.00422 (1.00) |
0.00019 (0.129) |
0.00182 (1.00) |
0.315 (1.00) |
0.0261 (1.00) |
0.0178 (1.00) |
0.334 (1.00) |
2p loss | 32 (6%) | 545 |
0.0307 (1.00) |
0.0282 (1.00) |
0.263 (1.00) |
0.771 (1.00) |
1e-05 (0.00784) |
0.618 (1.00) |
1 (1.00) |
0.428 (1.00) |
0.244 (1.00) |
0.226 (1.00) |
2q loss | 32 (6%) | 545 |
0.0298 (1.00) |
0.0284 (1.00) |
0.262 (1.00) |
0.77 (1.00) |
1e-05 (0.00784) |
0.616 (1.00) |
0.896 (1.00) |
0.249 (1.00) |
0.0823 (1.00) |
0.0733 (1.00) |
3p loss | 40 (7%) | 537 |
0.91 (1.00) |
0.788 (1.00) |
0.718 (1.00) |
0.151 (1.00) |
6e-05 (0.0419) |
0.202 (1.00) |
0.236 (1.00) |
0.901 (1.00) |
0.638 (1.00) |
0.231 (1.00) |
3q loss | 34 (6%) | 543 |
0.229 (1.00) |
0.129 (1.00) |
0.514 (1.00) |
0.678 (1.00) |
1e-05 (0.00784) |
0.0344 (1.00) |
0.785 (1.00) |
0.321 (1.00) |
0.888 (1.00) |
0.18 (1.00) |
4q loss | 56 (10%) | 521 |
0.00098 (0.639) |
0.00058 (0.386) |
0.0189 (1.00) |
0.154 (1.00) |
0.00019 (0.129) |
0.00092 (0.603) |
0.732 (1.00) |
0.479 (1.00) |
0.561 (1.00) |
1 (1.00) |
6p loss | 86 (15%) | 491 |
0.569 (1.00) |
0.332 (1.00) |
0.773 (1.00) |
0.706 (1.00) |
1e-05 (0.00784) |
0.572 (1.00) |
0.795 (1.00) |
0.3 (1.00) |
0.869 (1.00) |
0.595 (1.00) |
6q loss | 125 (22%) | 452 |
0.939 (1.00) |
0.579 (1.00) |
0.563 (1.00) |
0.941 (1.00) |
1e-05 (0.00784) |
0.653 (1.00) |
0.969 (1.00) |
0.647 (1.00) |
0.495 (1.00) |
0.293 (1.00) |
12q loss | 57 (10%) | 520 |
0.14 (1.00) |
0.0983 (1.00) |
0.444 (1.00) |
0.653 (1.00) |
0.0003 (0.202) |
0.553 (1.00) |
0.182 (1.00) |
0.391 (1.00) |
1 (1.00) |
0.663 (1.00) |
17p loss | 65 (11%) | 512 |
0.0194 (1.00) |
0.0202 (1.00) |
0.65 (1.00) |
0.581 (1.00) |
1e-05 (0.00784) |
0.129 (1.00) |
0.214 (1.00) |
0.351 (1.00) |
0.3 (1.00) |
0.704 (1.00) |
17q loss | 41 (7%) | 536 |
0.00504 (1.00) |
0.0602 (1.00) |
0.212 (1.00) |
0.0472 (1.00) |
1e-05 (0.00784) |
0.0363 (1.00) |
0.687 (1.00) |
0.48 (1.00) |
0.147 (1.00) |
0.107 (1.00) |
18p loss | 71 (12%) | 506 |
0.0473 (1.00) |
0.0318 (1.00) |
0.361 (1.00) |
0.221 (1.00) |
1e-05 (0.00784) |
0.506 (1.00) |
0.0637 (1.00) |
0.0059 (1.00) |
0.134 (1.00) |
0.597 (1.00) |
18q loss | 62 (11%) | 515 |
0.147 (1.00) |
0.00732 (1.00) |
0.62 (1.00) |
0.239 (1.00) |
0.00013 (0.0888) |
0.479 (1.00) |
0.00916 (1.00) |
0.00351 (1.00) |
0.418 (1.00) |
0.12 (1.00) |
19p loss | 27 (5%) | 550 |
0.00062 (0.412) |
0.00092 (0.603) |
0.0584 (1.00) |
0.435 (1.00) |
0.0134 (1.00) |
0.00012 (0.0822) |
0.0198 (1.00) |
0.0108 (1.00) |
0.853 (1.00) |
0.668 (1.00) |
22q loss | 181 (31%) | 396 |
0.651 (1.00) |
0.562 (1.00) |
0.198 (1.00) |
0.875 (1.00) |
1e-05 (0.00784) |
0.0736 (1.00) |
0.909 (1.00) |
0.135 (1.00) |
0.202 (1.00) |
0.0925 (1.00) |
xq loss | 106 (18%) | 471 |
0.0189 (1.00) |
0.0157 (1.00) |
0.112 (1.00) |
0.106 (1.00) |
1e-05 (0.00784) |
0.00587 (1.00) |
0.903 (1.00) |
0.683 (1.00) |
0.414 (1.00) |
0.961 (1.00) |
2p gain | 37 (6%) | 540 |
0.467 (1.00) |
0.734 (1.00) |
0.252 (1.00) |
0.225 (1.00) |
0.0024 (1.00) |
0.392 (1.00) |
0.808 (1.00) |
0.61 (1.00) |
1 (1.00) |
0.54 (1.00) |
2q gain | 36 (6%) | 541 |
0.649 (1.00) |
0.912 (1.00) |
0.0981 (1.00) |
0.278 (1.00) |
0.00154 (0.986) |
0.39 (1.00) |
0.985 (1.00) |
0.611 (1.00) |
0.766 (1.00) |
0.179 (1.00) |
4p gain | 36 (6%) | 541 |
0.241 (1.00) |
0.615 (1.00) |
0.486 (1.00) |
0.521 (1.00) |
0.00066 (0.436) |
0.458 (1.00) |
0.757 (1.00) |
0.55 (1.00) |
0.614 (1.00) |
0.792 (1.00) |
4q gain | 33 (6%) | 544 |
0.309 (1.00) |
0.318 (1.00) |
0.496 (1.00) |
0.541 (1.00) |
0.00552 (1.00) |
0.266 (1.00) |
0.926 (1.00) |
0.684 (1.00) |
0.364 (1.00) |
0.657 (1.00) |
6p gain | 24 (4%) | 553 |
0.0121 (1.00) |
0.117 (1.00) |
0.875 (1.00) |
0.162 (1.00) |
0.158 (1.00) |
0.0824 (1.00) |
0.811 (1.00) |
0.583 (1.00) |
1 (1.00) |
1 (1.00) |
6q gain | 23 (4%) | 554 |
0.00141 (0.908) |
0.0362 (1.00) |
0.787 (1.00) |
0.104 (1.00) |
0.0249 (1.00) |
0.00575 (1.00) |
0.931 (1.00) |
0.529 (1.00) |
0.813 (1.00) |
1 (1.00) |
10q gain | 3 (1%) | 574 |
0.555 (1.00) |
1 (1.00) |
0.0528 (1.00) |
0.794 (1.00) |
0.196 (1.00) |
0.19 (1.00) |
||||
11p gain | 17 (3%) | 560 |
0.906 (1.00) |
0.881 (1.00) |
0.247 (1.00) |
0.945 (1.00) |
0.197 (1.00) |
0.0857 (1.00) |
0.868 (1.00) |
0.529 (1.00) |
0.697 (1.00) |
1 (1.00) |
11q gain | 14 (2%) | 563 |
0.187 (1.00) |
0.0647 (1.00) |
0.216 (1.00) |
0.36 (1.00) |
0.15 (1.00) |
0.00057 (0.38) |
0.868 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
12q gain | 49 (8%) | 528 |
0.517 (1.00) |
0.955 (1.00) |
0.538 (1.00) |
0.00986 (1.00) |
0.0016 (1.00) |
0.591 (1.00) |
0.312 (1.00) |
0.3 (1.00) |
0.0221 (1.00) |
0.124 (1.00) |
13q gain | 10 (2%) | 567 |
0.0531 (1.00) |
0.494 (1.00) |
0.179 (1.00) |
0.826 (1.00) |
0.0568 (1.00) |
1 (1.00) |
0.893 (1.00) |
1 (1.00) |
0.426 (1.00) |
1 (1.00) |
14q gain | 22 (4%) | 555 |
0.429 (1.00) |
0.782 (1.00) |
0.0103 (1.00) |
0.806 (1.00) |
0.39 (1.00) |
0.508 (1.00) |
0.473 (1.00) |
0.857 (1.00) |
0.425 (1.00) |
0.326 (1.00) |
xq gain | 16 (3%) | 561 |
0.255 (1.00) |
0.947 (1.00) |
0.985 (1.00) |
0.362 (1.00) |
0.952 (1.00) |
0.718 (1.00) |
0.79 (1.00) |
1 (1.00) |
0.0398 (1.00) |
0.263 (1.00) |
1p loss | 16 (3%) | 561 |
0.636 (1.00) |
0.827 (1.00) |
0.941 (1.00) |
0.198 (1.00) |
0.0218 (1.00) |
0.582 (1.00) |
0.339 (1.00) |
0.181 (1.00) |
0.111 (1.00) |
0.018 (1.00) |
1q loss | 15 (3%) | 562 |
0.831 (1.00) |
0.978 (1.00) |
0.857 (1.00) |
0.363 (1.00) |
0.134 (1.00) |
1 (1.00) |
0.339 (1.00) |
0.208 (1.00) |
0.515 (1.00) |
0.0839 (1.00) |
4p loss | 55 (10%) | 522 |
0.0796 (1.00) |
0.00323 (1.00) |
0.0329 (1.00) |
0.226 (1.00) |
0.00274 (1.00) |
0.00199 (1.00) |
0.294 (1.00) |
0.122 (1.00) |
0.744 (1.00) |
1 (1.00) |
7p loss | 8 (1%) | 569 |
0.0223 (1.00) |
0.0344 (1.00) |
0.458 (1.00) |
0.0422 (1.00) |
0.0158 (1.00) |
|||||
7q loss | 6 (1%) | 571 |
0.101 (1.00) |
0.299 (1.00) |
0.942 (1.00) |
0.125 (1.00) |
0.0987 (1.00) |
|||||
8p loss | 58 (10%) | 519 |
0.544 (1.00) |
0.441 (1.00) |
0.181 (1.00) |
0.78 (1.00) |
0.261 (1.00) |
0.65 (1.00) |
0.906 (1.00) |
0.95 (1.00) |
0.575 (1.00) |
0.392 (1.00) |
8q loss | 42 (7%) | 535 |
0.621 (1.00) |
0.152 (1.00) |
0.0224 (1.00) |
0.808 (1.00) |
0.103 (1.00) |
0.137 (1.00) |
0.858 (1.00) |
0.655 (1.00) |
0.461 (1.00) |
0.146 (1.00) |
9p loss | 202 (35%) | 375 |
0.0074 (1.00) |
0.108 (1.00) |
0.551 (1.00) |
0.484 (1.00) |
0.599 (1.00) |
0.48 (1.00) |
0.621 (1.00) |
0.0468 (1.00) |
0.0222 (1.00) |
0.00873 (1.00) |
9q loss | 94 (16%) | 483 |
0.37 (1.00) |
0.0985 (1.00) |
0.0731 (1.00) |
0.276 (1.00) |
0.548 (1.00) |
0.574 (1.00) |
0.362 (1.00) |
0.117 (1.00) |
0.751 (1.00) |
0.181 (1.00) |
12p loss | 58 (10%) | 519 |
0.0961 (1.00) |
0.0954 (1.00) |
0.559 (1.00) |
0.832 (1.00) |
0.00616 (1.00) |
0.599 (1.00) |
0.154 (1.00) |
0.0581 (1.00) |
1 (1.00) |
0.662 (1.00) |
16p loss | 63 (11%) | 514 |
0.287 (1.00) |
0.852 (1.00) |
0.661 (1.00) |
0.735 (1.00) |
0.0343 (1.00) |
0.0593 (1.00) |
0.451 (1.00) |
0.19 (1.00) |
0.565 (1.00) |
0.649 (1.00) |
16q loss | 83 (14%) | 494 |
0.0603 (1.00) |
0.428 (1.00) |
0.467 (1.00) |
0.898 (1.00) |
0.0128 (1.00) |
0.367 (1.00) |
0.0489 (1.00) |
0.0183 (1.00) |
0.662 (1.00) |
0.6 (1.00) |
19q loss | 35 (6%) | 542 |
0.00056 (0.374) |
0.00497 (1.00) |
0.413 (1.00) |
0.152 (1.00) |
0.00106 (0.688) |
0.00079 (0.521) |
0.0801 (1.00) |
0.337 (1.00) |
0.93 (1.00) |
0.513 (1.00) |
21q loss | 42 (7%) | 535 |
0.0215 (1.00) |
0.00134 (0.866) |
0.0531 (1.00) |
0.263 (1.00) |
0.0008 (0.526) |
0.00177 (1.00) |
0.0121 (1.00) |
0.0837 (1.00) |
0.827 (1.00) |
1 (1.00) |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
1P GAIN MUTATED | 50 | 15 | 17 |
1P GAIN WILD-TYPE | 112 | 203 | 180 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
1Q GAIN MUTATED | 57 | 13 | 19 |
1Q GAIN WILD-TYPE | 105 | 205 | 178 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
3P GAIN MUTATED | 37 | 5 | 16 |
3P GAIN WILD-TYPE | 125 | 213 | 181 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
3Q GAIN MUTATED | 38 | 7 | 19 |
3Q GAIN WILD-TYPE | 124 | 211 | 178 |
P value = 5e-05 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
5P GAIN MUTATED | 27 | 7 | 15 |
5P GAIN WILD-TYPE | 135 | 211 | 182 |
P value = 0.00014 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
5Q GAIN MUTATED | 23 | 6 | 12 |
5Q GAIN WILD-TYPE | 139 | 212 | 185 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
7P GAIN MUTATED | 135 | 65 | 128 | 82 |
7P GAIN WILD-TYPE | 12 | 31 | 24 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
7P GAIN MUTATED | 132 | 55 | 85 | 138 |
7P GAIN WILD-TYPE | 16 | 47 | 15 | 20 |
P value = 0.00029 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
7P GAIN MUTATED | 139 | 136 | 64 | 105 |
7P GAIN WILD-TYPE | 17 | 47 | 23 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
7P GAIN MUTATED | 214 | 113 | 117 |
7P GAIN WILD-TYPE | 79 | 11 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
7P GAIN MUTATED | 145 | 196 | 127 |
7P GAIN WILD-TYPE | 17 | 22 | 70 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
7P GAIN MUTATED | 82 | 93 | 46 |
7P GAIN WILD-TYPE | 7 | 15 | 32 |
P value = 7e-05 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
7P GAIN MUTATED | 16 | 84 | 20 |
7P GAIN WILD-TYPE | 14 | 8 | 5 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
7Q GAIN MUTATED | 135 | 62 | 129 | 87 |
7Q GAIN WILD-TYPE | 12 | 34 | 23 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
7Q GAIN MUTATED | 130 | 61 | 84 | 138 |
7Q GAIN WILD-TYPE | 18 | 41 | 16 | 20 |
P value = 0.00017 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
7Q GAIN MUTATED | 221 | 112 | 114 |
7Q GAIN WILD-TYPE | 72 | 12 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
7Q GAIN MUTATED | 141 | 199 | 134 |
7Q GAIN WILD-TYPE | 21 | 19 | 63 |
P value = 4e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
7Q GAIN MUTATED | 81 | 91 | 50 |
7Q GAIN WILD-TYPE | 8 | 17 | 28 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
8P GAIN MUTATED | 7 | 18 | 6 | 17 |
8P GAIN WILD-TYPE | 140 | 78 | 146 | 96 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
8P GAIN MUTATED | 35 | 4 | 13 |
8P GAIN WILD-TYPE | 127 | 214 | 184 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
8Q GAIN MUTATED | 7 | 20 | 7 | 20 |
8Q GAIN WILD-TYPE | 140 | 76 | 145 | 93 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
8Q GAIN MUTATED | 9 | 26 | 4 | 15 |
8Q GAIN WILD-TYPE | 139 | 76 | 96 | 143 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
8Q GAIN MUTATED | 34 | 6 | 19 |
8Q GAIN WILD-TYPE | 128 | 212 | 178 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
9P GAIN MUTATED | 27 | 7 | 13 |
9P GAIN WILD-TYPE | 135 | 211 | 184 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
9Q GAIN MUTATED | 36 | 14 | 21 |
9Q GAIN WILD-TYPE | 126 | 204 | 176 |
P value = 0.00011 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
10P GAIN MUTATED | 2 | 9 | 0 | 1 |
10P GAIN WILD-TYPE | 146 | 93 | 100 | 157 |
P value = 0.00036 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
10P GAIN MUTATED | 1 | 0 | 7 |
10P GAIN WILD-TYPE | 88 | 108 | 71 |
P value = 8e-05 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
12P GAIN MUTATED | 31 | 11 | 18 |
12P GAIN WILD-TYPE | 131 | 207 | 179 |
P value = 6e-05 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
15Q GAIN MUTATED | 15 | 1 | 8 |
15Q GAIN WILD-TYPE | 147 | 217 | 189 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
16P GAIN MUTATED | 25 | 4 | 9 |
16P GAIN WILD-TYPE | 137 | 214 | 188 |
P value = 6e-05 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
16Q GAIN MUTATED | 22 | 5 | 10 |
16Q GAIN WILD-TYPE | 140 | 213 | 187 |
P value = 5e-05 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
17P GAIN MUTATED | 27 | 9 | 12 |
17P GAIN WILD-TYPE | 135 | 209 | 185 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
17Q GAIN MUTATED | 34 | 12 | 14 |
17Q GAIN WILD-TYPE | 128 | 206 | 183 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
18P GAIN MUTATED | 10 | 25 | 5 | 15 |
18P GAIN WILD-TYPE | 137 | 71 | 147 | 98 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
18P GAIN MUTATED | 34 | 3 | 21 |
18P GAIN WILD-TYPE | 128 | 215 | 176 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
18Q GAIN MUTATED | 9 | 24 | 6 | 16 |
18Q GAIN WILD-TYPE | 138 | 72 | 146 | 97 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
18Q GAIN MUTATED | 37 | 4 | 17 |
18Q GAIN WILD-TYPE | 125 | 214 | 180 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
19P GAIN MUTATED | 52 | 34 | 91 | 21 |
19P GAIN WILD-TYPE | 95 | 62 | 61 | 92 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
19P GAIN MUTATED | 62 | 25 | 58 | 53 |
19P GAIN WILD-TYPE | 86 | 77 | 42 | 105 |
P value = 3e-04 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
19P GAIN MUTATED | 94 | 50 | 68 |
19P GAIN WILD-TYPE | 199 | 74 | 61 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
19P GAIN MUTATED | 45 | 137 | 44 |
19P GAIN WILD-TYPE | 117 | 81 | 153 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
19P GAIN MUTATED | 28 | 68 | 12 |
19P GAIN WILD-TYPE | 61 | 40 | 66 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
19P GAIN MUTATED | 22 | 18 | 35 |
19P GAIN WILD-TYPE | 47 | 58 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
19Q GAIN MUTATED | 46 | 28 | 85 | 15 |
19Q GAIN WILD-TYPE | 101 | 68 | 67 | 98 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
19Q GAIN MUTATED | 55 | 18 | 55 | 46 |
19Q GAIN WILD-TYPE | 93 | 84 | 45 | 112 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
19Q GAIN MUTATED | 39 | 127 | 33 |
19Q GAIN WILD-TYPE | 123 | 91 | 164 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
19Q GAIN MUTATED | 25 | 62 | 6 |
19Q GAIN WILD-TYPE | 64 | 46 | 72 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
20P GAIN MUTATED | 51 | 26 | 86 | 29 |
20P GAIN WILD-TYPE | 96 | 70 | 66 | 84 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20P GAIN MUTATED | 55 | 21 | 64 | 52 |
20P GAIN WILD-TYPE | 93 | 81 | 36 | 106 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
20P GAIN MUTATED | 85 | 58 | 69 |
20P GAIN WILD-TYPE | 208 | 66 | 60 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
20P GAIN MUTATED | 61 | 108 | 53 |
20P GAIN WILD-TYPE | 101 | 110 | 144 |
P value = 9e-05 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
20P GAIN MUTATED | 35 | 57 | 17 |
20P GAIN WILD-TYPE | 54 | 51 | 61 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
20Q GAIN MUTATED | 50 | 28 | 86 | 27 |
20Q GAIN WILD-TYPE | 97 | 68 | 66 | 86 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20Q GAIN MUTATED | 58 | 22 | 62 | 49 |
20Q GAIN WILD-TYPE | 90 | 80 | 38 | 109 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
20Q GAIN MUTATED | 85 | 57 | 68 |
20Q GAIN WILD-TYPE | 208 | 67 | 61 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
20Q GAIN MUTATED | 59 | 107 | 54 |
20Q GAIN WILD-TYPE | 103 | 111 | 143 |
P value = 7e-05 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
20Q GAIN MUTATED | 34 | 57 | 16 |
20Q GAIN WILD-TYPE | 55 | 51 | 62 |
P value = 0.00019 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
21Q GAIN MUTATED | 30 | 11 | 23 |
21Q GAIN WILD-TYPE | 132 | 207 | 174 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
22Q GAIN MUTATED | 6 | 14 | 0 | 11 |
22Q GAIN WILD-TYPE | 141 | 82 | 152 | 102 |
P value = 7e-05 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
22Q GAIN MUTATED | 19 | 3 | 12 |
22Q GAIN WILD-TYPE | 143 | 215 | 185 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
2P LOSS MUTATED | 21 | 2 | 9 |
2P LOSS WILD-TYPE | 141 | 216 | 188 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
2Q LOSS MUTATED | 21 | 2 | 9 |
2Q LOSS WILD-TYPE | 141 | 216 | 188 |
P value = 6e-05 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
3P LOSS MUTATED | 21 | 4 | 15 |
3P LOSS WILD-TYPE | 141 | 214 | 182 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
3Q LOSS MUTATED | 20 | 2 | 12 |
3Q LOSS WILD-TYPE | 142 | 216 | 185 |
P value = 0.00019 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
4Q LOSS MUTATED | 29 | 11 | 16 |
4Q LOSS WILD-TYPE | 133 | 207 | 181 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
5P LOSS MUTATED | 5 | 20 | 6 | 9 |
5P LOSS WILD-TYPE | 142 | 76 | 146 | 104 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
5P LOSS MUTATED | 6 | 22 | 5 | 7 |
5P LOSS WILD-TYPE | 142 | 80 | 95 | 151 |
P value = 6e-05 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
5P LOSS MUTATED | 21 | 4 | 18 |
5P LOSS WILD-TYPE | 141 | 214 | 179 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
5P LOSS MUTATED | 1 | 5 | 15 |
5P LOSS WILD-TYPE | 88 | 103 | 63 |
P value = 4e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
5Q LOSS MUTATED | 6 | 19 | 5 | 11 |
5Q LOSS WILD-TYPE | 141 | 77 | 147 | 102 |
P value = 4e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
5Q LOSS MUTATED | 9 | 21 | 4 | 7 |
5Q LOSS WILD-TYPE | 139 | 81 | 96 | 151 |
P value = 5e-05 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
5Q LOSS MUTATED | 21 | 5 | 18 |
5Q LOSS WILD-TYPE | 141 | 213 | 179 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
5Q LOSS MUTATED | 0 | 5 | 17 |
5Q LOSS WILD-TYPE | 89 | 103 | 61 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
6P LOSS MUTATED | 51 | 13 | 22 |
6P LOSS WILD-TYPE | 111 | 205 | 175 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
6Q LOSS MUTATED | 62 | 30 | 33 |
6Q LOSS WILD-TYPE | 100 | 188 | 164 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
10P LOSS MUTATED | 132 | 64 | 140 | 84 |
10P LOSS WILD-TYPE | 15 | 32 | 12 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
10P LOSS MUTATED | 127 | 63 | 93 | 137 |
10P LOSS WILD-TYPE | 21 | 39 | 7 | 21 |
P value = 7e-05 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
10P LOSS MUTATED | 227 | 109 | 120 |
10P LOSS WILD-TYPE | 66 | 15 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
10P LOSS MUTATED | 150 | 212 | 121 |
10P LOSS WILD-TYPE | 12 | 6 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
10P LOSS MUTATED | 79 | 99 | 46 |
10P LOSS WILD-TYPE | 10 | 9 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
10Q LOSS MUTATED | 132 | 68 | 146 | 87 |
10Q LOSS WILD-TYPE | 15 | 28 | 6 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
10Q LOSS MUTATED | 128 | 69 | 97 | 139 |
10Q LOSS WILD-TYPE | 20 | 33 | 3 | 19 |
P value = 0.00011 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
10Q LOSS MUTATED | 236 | 109 | 123 |
10Q LOSS WILD-TYPE | 57 | 15 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
10Q LOSS MUTATED | 150 | 214 | 130 |
10Q LOSS WILD-TYPE | 12 | 4 | 67 |
P value = 5e-05 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
10Q LOSS MUTATED | 78 | 102 | 56 |
10Q LOSS WILD-TYPE | 11 | 6 | 22 |
P value = 7e-05 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 58 | 44 | 45 |
10Q LOSS MUTATED | 50 | 42 | 44 | 41 |
10Q LOSS WILD-TYPE | 4 | 16 | 0 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
11P LOSS MUTATED | 27 | 32 | 9 | 22 |
11P LOSS WILD-TYPE | 120 | 64 | 143 | 91 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
11P LOSS MUTATED | 26 | 36 | 4 | 24 |
11P LOSS WILD-TYPE | 122 | 66 | 96 | 134 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
11P LOSS MUTATED | 59 | 8 | 32 |
11P LOSS WILD-TYPE | 103 | 210 | 165 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
11Q LOSS MUTATED | 31 | 28 | 10 | 18 |
11Q LOSS WILD-TYPE | 116 | 68 | 142 | 95 |
P value = 0.00014 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
11Q LOSS MUTATED | 28 | 28 | 5 | 26 |
11Q LOSS WILD-TYPE | 120 | 74 | 95 | 132 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
11Q LOSS MUTATED | 58 | 10 | 25 |
11Q LOSS WILD-TYPE | 104 | 208 | 172 |
P value = 3e-04 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
12Q LOSS MUTATED | 28 | 10 | 19 |
12Q LOSS WILD-TYPE | 134 | 208 | 178 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
13Q LOSS MUTATED | 57 | 35 | 26 | 45 |
13Q LOSS WILD-TYPE | 90 | 61 | 126 | 68 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
13Q LOSS MUTATED | 112 | 20 | 54 |
13Q LOSS WILD-TYPE | 50 | 198 | 143 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
14Q LOSS MUTATED | 46 | 33 | 17 | 39 |
14Q LOSS WILD-TYPE | 101 | 63 | 135 | 74 |
P value = 0.00016 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
14Q LOSS MUTATED | 43 | 35 | 10 | 47 |
14Q LOSS WILD-TYPE | 105 | 67 | 90 | 111 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
14Q LOSS MUTATED | 82 | 12 | 52 |
14Q LOSS WILD-TYPE | 80 | 206 | 145 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
15Q LOSS MUTATED | 26 | 26 | 12 | 31 |
15Q LOSS WILD-TYPE | 121 | 70 | 140 | 82 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
15Q LOSS MUTATED | 22 | 37 | 7 | 29 |
15Q LOSS WILD-TYPE | 126 | 65 | 93 | 129 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
15Q LOSS MUTATED | 58 | 20 | 28 |
15Q LOSS WILD-TYPE | 104 | 198 | 169 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
17P LOSS MUTATED | 37 | 5 | 23 |
17P LOSS WILD-TYPE | 125 | 213 | 174 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
17Q LOSS MUTATED | 24 | 4 | 13 |
17Q LOSS WILD-TYPE | 138 | 214 | 184 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
18P LOSS MUTATED | 34 | 12 | 25 |
18P LOSS WILD-TYPE | 128 | 206 | 172 |
P value = 0.00013 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
18Q LOSS MUTATED | 29 | 10 | 23 |
18Q LOSS WILD-TYPE | 133 | 208 | 174 |
P value = 0.00012 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
19P LOSS MUTATED | 3 | 0 | 10 |
19P LOSS WILD-TYPE | 86 | 108 | 68 |
P value = 0.00013 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
20P LOSS MUTATED | 4 | 10 | 0 | 3 |
20P LOSS WILD-TYPE | 143 | 86 | 152 | 110 |
P value = 5e-05 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20P LOSS MUTATED | 5 | 11 | 0 | 1 |
20P LOSS WILD-TYPE | 143 | 91 | 100 | 157 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
20P LOSS MUTATED | 14 | 0 | 5 |
20P LOSS WILD-TYPE | 148 | 218 | 192 |
P value = 0.00012 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20Q LOSS MUTATED | 4 | 10 | 0 | 1 |
20Q LOSS WILD-TYPE | 144 | 92 | 100 | 157 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
20Q LOSS MUTATED | 14 | 1 | 2 |
20Q LOSS WILD-TYPE | 148 | 217 | 195 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
22Q LOSS MUTATED | 79 | 47 | 55 |
22Q LOSS WILD-TYPE | 83 | 171 | 142 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
XQ LOSS MUTATED | 56 | 25 | 25 |
XQ LOSS WILD-TYPE | 106 | 193 | 172 |
-
Copy number data file = transformed.cor.cli.txt
-
Molecular subtypes file = GBM-TP.transferedmergedcluster.txt
-
Number of patients = 577
-
Number of significantly arm-level cnvs = 80
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.