This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 80 arm-level events and 10 molecular subtypes across 522 patients, 135 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'CN_CNMF'.
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1q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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2p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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2q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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3p gain cnv correlated to 'METHLYATION_CNMF'.
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3q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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5p gain cnv correlated to 'CN_CNMF'.
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6p gain cnv correlated to 'CN_CNMF'.
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7p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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7q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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8q gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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9p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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9q gain cnv correlated to 'CN_CNMF'.
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10p gain cnv correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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11p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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11q gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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12p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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12q gain cnv correlated to 'CN_CNMF'.
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13q gain cnv correlated to 'CN_CNMF'.
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14q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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15q gain cnv correlated to 'CN_CNMF'.
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16p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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16q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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17p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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17q gain cnv correlated to 'CN_CNMF'.
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18p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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18q gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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19p gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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19q gain cnv correlated to 'METHLYATION_CNMF'.
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20p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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20q gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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22q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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xq gain cnv correlated to 'CN_CNMF'.
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1p loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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3p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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4p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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4q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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5p loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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5q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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8p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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9q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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10p loss cnv correlated to 'CN_CNMF'.
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10q loss cnv correlated to 'CN_CNMF'.
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11p loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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11q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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13q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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14q loss cnv correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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15q loss cnv correlated to 'CN_CNMF'.
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16p loss cnv correlated to 'CN_CNMF'.
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16q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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17p loss cnv correlated to 'CN_CNMF'.
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18p loss cnv correlated to 'METHLYATION_CNMF'.
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18q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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19p loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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19q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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20p loss cnv correlated to 'CN_CNMF'.
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21q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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22q loss cnv correlated to 'CN_CNMF'.
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xq loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
1q gain | 121 (23%) | 401 |
1e-05 (0.008) |
1e-05 (0.008) |
0.29 (1.00) |
0.77 (1.00) |
0.0002 (0.135) |
0.00018 (0.122) |
0.00045 (0.297) |
0.00031 (0.208) |
0.0115 (1.00) |
0.0962 (1.00) |
5q loss | 164 (31%) | 358 |
1e-05 (0.008) |
1e-05 (0.008) |
0.242 (1.00) |
0.773 (1.00) |
0.226 (1.00) |
1e-05 (0.008) |
0.388 (1.00) |
0.00024 (0.162) |
0.00019 (0.129) |
0.0771 (1.00) |
9p loss | 186 (36%) | 336 |
1e-05 (0.008) |
1e-05 (0.008) |
0.667 (1.00) |
0.114 (1.00) |
0.344 (1.00) |
0.00012 (0.0829) |
0.0569 (1.00) |
3e-05 (0.0215) |
3e-05 (0.0215) |
0.601 (1.00) |
18q loss | 211 (40%) | 311 |
1e-05 (0.008) |
1e-05 (0.008) |
0.213 (1.00) |
0.332 (1.00) |
0.0016 (1.00) |
1e-05 (0.008) |
0.00075 (0.488) |
2e-05 (0.0145) |
8e-05 (0.0557) |
0.0532 (1.00) |
18q gain | 53 (10%) | 469 |
0.0016 (1.00) |
2e-05 (0.0145) |
0.00702 (1.00) |
0.0877 (1.00) |
0.00102 (0.654) |
0.00016 (0.109) |
3e-05 (0.0215) |
0.143 (1.00) |
4e-05 (0.0282) |
0.0616 (1.00) |
3p loss | 297 (57%) | 225 |
1e-05 (0.008) |
1e-05 (0.008) |
0.942 (1.00) |
0.676 (1.00) |
0.0242 (1.00) |
8e-05 (0.0557) |
0.0978 (1.00) |
0.00077 (0.499) |
6e-05 (0.0419) |
0.235 (1.00) |
8p loss | 187 (36%) | 335 |
1e-05 (0.008) |
1e-05 (0.008) |
0.547 (1.00) |
0.678 (1.00) |
0.0714 (1.00) |
0.0122 (1.00) |
0.14 (1.00) |
0.00273 (1.00) |
0.00015 (0.102) |
5e-05 (0.0351) |
16q loss | 81 (16%) | 441 |
0.00238 (1.00) |
1e-05 (0.008) |
0.475 (1.00) |
0.243 (1.00) |
1e-05 (0.008) |
1e-05 (0.008) |
0.00807 (1.00) |
0.00825 (1.00) |
1e-05 (0.008) |
0.00245 (1.00) |
2q gain | 74 (14%) | 448 |
1e-05 (0.008) |
1e-05 (0.008) |
0.387 (1.00) |
0.729 (1.00) |
0.0699 (1.00) |
0.00027 (0.182) |
0.105 (1.00) |
0.102 (1.00) |
0.0172 (1.00) |
0.0396 (1.00) |
3q gain | 254 (49%) | 268 |
5e-05 (0.0351) |
1e-05 (0.008) |
0.697 (1.00) |
0.279 (1.00) |
0.0003 (0.202) |
0.0251 (1.00) |
0.00845 (1.00) |
0.803 (1.00) |
0.0216 (1.00) |
0.0959 (1.00) |
7p gain | 183 (35%) | 339 |
1e-05 (0.008) |
1e-05 (0.008) |
0.631 (1.00) |
0.504 (1.00) |
0.262 (1.00) |
0.115 (1.00) |
0.687 (1.00) |
1e-05 (0.008) |
0.123 (1.00) |
0.533 (1.00) |
7q gain | 129 (25%) | 393 |
1e-05 (0.008) |
1e-05 (0.008) |
0.175 (1.00) |
0.633 (1.00) |
0.542 (1.00) |
0.876 (1.00) |
0.0124 (1.00) |
7e-05 (0.0488) |
0.326 (1.00) |
0.503 (1.00) |
9p gain | 102 (20%) | 420 |
1e-05 (0.008) |
2e-05 (0.0145) |
0.39 (1.00) |
0.0944 (1.00) |
0.00187 (1.00) |
0.0157 (1.00) |
0.00724 (1.00) |
0.00966 (1.00) |
8e-05 (0.0557) |
0.157 (1.00) |
14q gain | 151 (29%) | 371 |
1e-05 (0.008) |
1e-05 (0.008) |
0.217 (1.00) |
0.0971 (1.00) |
0.0192 (1.00) |
0.00065 (0.424) |
0.00704 (1.00) |
0.00038 (0.253) |
5e-05 (0.0351) |
0.00051 (0.336) |
16p gain | 107 (20%) | 415 |
1e-05 (0.008) |
1e-05 (0.008) |
0.332 (1.00) |
0.176 (1.00) |
0.385 (1.00) |
0.00535 (1.00) |
0.867 (1.00) |
2e-05 (0.0145) |
0.478 (1.00) |
0.54 (1.00) |
16q gain | 107 (20%) | 415 |
1e-05 (0.008) |
2e-05 (0.0145) |
0.584 (1.00) |
0.817 (1.00) |
0.175 (1.00) |
0.005 (1.00) |
0.289 (1.00) |
3e-05 (0.0215) |
0.0897 (1.00) |
0.194 (1.00) |
18p gain | 123 (24%) | 399 |
1e-05 (0.008) |
1e-05 (0.008) |
0.331 (1.00) |
0.318 (1.00) |
0.376 (1.00) |
1e-05 (0.008) |
0.248 (1.00) |
0.0153 (1.00) |
0.00087 (0.562) |
0.163 (1.00) |
19p gain | 56 (11%) | 466 |
0.0132 (1.00) |
3e-05 (0.0215) |
0.0879 (1.00) |
0.767 (1.00) |
0.0117 (1.00) |
0.00022 (0.149) |
0.00036 (0.24) |
0.0528 (1.00) |
0.403 (1.00) |
0.182 (1.00) |
22q gain | 112 (21%) | 410 |
1e-05 (0.008) |
1e-05 (0.008) |
0.156 (1.00) |
0.517 (1.00) |
0.272 (1.00) |
0.418 (1.00) |
0.00036 (0.24) |
0.0817 (1.00) |
0.0131 (1.00) |
0.529 (1.00) |
4p loss | 194 (37%) | 328 |
1e-05 (0.008) |
1e-05 (0.008) |
0.0622 (1.00) |
0.55 (1.00) |
0.00054 (0.355) |
0.00012 (0.0829) |
0.183 (1.00) |
0.0272 (1.00) |
0.00062 (0.406) |
0.0656 (1.00) |
11q loss | 172 (33%) | 350 |
1e-05 (0.008) |
1e-05 (0.008) |
0.176 (1.00) |
0.079 (1.00) |
0.00533 (1.00) |
6e-05 (0.0419) |
0.107 (1.00) |
0.428 (1.00) |
0.152 (1.00) |
0.507 (1.00) |
21q loss | 184 (35%) | 338 |
1e-05 (0.008) |
1e-05 (0.008) |
0.575 (1.00) |
0.983 (1.00) |
0.0339 (1.00) |
0.034 (1.00) |
0.302 (1.00) |
0.00033 (0.221) |
0.00076 (0.493) |
0.233 (1.00) |
2p gain | 97 (19%) | 425 |
1e-05 (0.008) |
1e-05 (0.008) |
0.0231 (1.00) |
0.437 (1.00) |
0.0543 (1.00) |
0.00128 (0.817) |
0.0208 (1.00) |
0.0197 (1.00) |
0.0024 (1.00) |
0.0893 (1.00) |
8q gain | 310 (59%) | 212 |
3e-05 (0.0215) |
3e-05 (0.0215) |
0.0813 (1.00) |
0.889 (1.00) |
0.178 (1.00) |
0.00428 (1.00) |
0.173 (1.00) |
0.0109 (1.00) |
0.0394 (1.00) |
0.0684 (1.00) |
10p gain | 40 (8%) | 482 |
0.0758 (1.00) |
3e-05 (0.0215) |
0.592 (1.00) |
0.0659 (1.00) |
0.0393 (1.00) |
0.00017 (0.116) |
0.0445 (1.00) |
0.0156 (1.00) |
0.557 (1.00) |
0.365 (1.00) |
11p gain | 66 (13%) | 456 |
0.00013 (0.0894) |
2e-05 (0.0145) |
0.827 (1.00) |
0.411 (1.00) |
0.134 (1.00) |
0.078 (1.00) |
0.0455 (1.00) |
0.266 (1.00) |
0.003 (1.00) |
0.00824 (1.00) |
11q gain | 71 (14%) | 451 |
0.00013 (0.0894) |
3e-05 (0.0215) |
0.576 (1.00) |
0.583 (1.00) |
0.154 (1.00) |
0.0302 (1.00) |
0.275 (1.00) |
0.0165 (1.00) |
0.0181 (1.00) |
0.0623 (1.00) |
12p gain | 148 (28%) | 374 |
1e-05 (0.008) |
1e-05 (0.008) |
0.0164 (1.00) |
0.822 (1.00) |
0.0159 (1.00) |
0.00201 (1.00) |
0.0122 (1.00) |
0.0973 (1.00) |
0.0388 (1.00) |
0.523 (1.00) |
17p gain | 67 (13%) | 455 |
1e-05 (0.008) |
3e-05 (0.0215) |
0.598 (1.00) |
0.903 (1.00) |
0.00786 (1.00) |
0.013 (1.00) |
0.0569 (1.00) |
0.0473 (1.00) |
0.247 (1.00) |
0.168 (1.00) |
20p gain | 190 (36%) | 332 |
1e-05 (0.008) |
4e-05 (0.0282) |
0.897 (1.00) |
0.733 (1.00) |
0.104 (1.00) |
0.0252 (1.00) |
0.0931 (1.00) |
0.0132 (1.00) |
0.509 (1.00) |
0.0406 (1.00) |
20q gain | 201 (39%) | 321 |
1e-05 (0.008) |
1e-05 (0.008) |
0.839 (1.00) |
0.872 (1.00) |
0.0742 (1.00) |
0.00042 (0.278) |
0.0632 (1.00) |
0.00408 (1.00) |
0.0344 (1.00) |
0.0114 (1.00) |
1p loss | 58 (11%) | 464 |
1e-05 (0.008) |
1e-05 (0.008) |
0.0315 (1.00) |
0.168 (1.00) |
0.00168 (1.00) |
0.00475 (1.00) |
0.403 (1.00) |
0.0875 (1.00) |
0.264 (1.00) |
0.0206 (1.00) |
4q loss | 151 (29%) | 371 |
1e-05 (0.008) |
1e-05 (0.008) |
0.472 (1.00) |
0.224 (1.00) |
0.0156 (1.00) |
0.00188 (1.00) |
0.258 (1.00) |
0.0912 (1.00) |
0.0301 (1.00) |
0.161 (1.00) |
5p loss | 51 (10%) | 471 |
3e-05 (0.0215) |
1e-05 (0.008) |
0.42 (1.00) |
0.385 (1.00) |
0.585 (1.00) |
0.128 (1.00) |
0.409 (1.00) |
0.257 (1.00) |
0.0936 (1.00) |
0.025 (1.00) |
9q loss | 87 (17%) | 435 |
1e-05 (0.008) |
1e-05 (0.008) |
0.976 (1.00) |
0.971 (1.00) |
0.388 (1.00) |
0.235 (1.00) |
0.423 (1.00) |
0.00365 (1.00) |
0.0126 (1.00) |
0.309 (1.00) |
11p loss | 141 (27%) | 381 |
1e-05 (0.008) |
0.00012 (0.0829) |
0.32 (1.00) |
0.333 (1.00) |
0.00573 (1.00) |
0.142 (1.00) |
0.00372 (1.00) |
0.121 (1.00) |
0.0948 (1.00) |
0.232 (1.00) |
13q loss | 167 (32%) | 355 |
1e-05 (0.008) |
1e-05 (0.008) |
0.386 (1.00) |
0.825 (1.00) |
0.00442 (1.00) |
0.00145 (0.924) |
0.0393 (1.00) |
0.192 (1.00) |
0.107 (1.00) |
0.2 (1.00) |
14q loss | 58 (11%) | 464 |
0.0629 (1.00) |
0.00329 (1.00) |
0.0346 (1.00) |
0.528 (1.00) |
4e-05 (0.0282) |
0.00038 (0.253) |
0.00044 (0.29) |
0.311 (1.00) |
2e-05 (0.0145) |
0.0129 (1.00) |
19p loss | 98 (19%) | 424 |
1e-05 (0.008) |
0.00014 (0.0958) |
0.712 (1.00) |
0.716 (1.00) |
0.0227 (1.00) |
0.00707 (1.00) |
0.022 (1.00) |
0.00408 (1.00) |
0.0101 (1.00) |
0.0368 (1.00) |
19q loss | 86 (16%) | 436 |
1e-05 (0.008) |
2e-05 (0.0145) |
0.128 (1.00) |
0.519 (1.00) |
0.205 (1.00) |
0.0896 (1.00) |
0.154 (1.00) |
0.0324 (1.00) |
0.173 (1.00) |
0.0414 (1.00) |
xq loss | 86 (16%) | 436 |
1e-05 (0.008) |
1e-05 (0.008) |
0.0847 (1.00) |
0.00184 (1.00) |
0.0303 (1.00) |
0.00504 (1.00) |
0.00348 (1.00) |
0.112 (1.00) |
0.373 (1.00) |
0.754 (1.00) |
1p gain | 70 (13%) | 452 |
0.00013 (0.0894) |
0.00979 (1.00) |
0.992 (1.00) |
0.625 (1.00) |
0.887 (1.00) |
0.942 (1.00) |
0.687 (1.00) |
0.00521 (1.00) |
0.119 (1.00) |
0.874 (1.00) |
3p gain | 81 (16%) | 441 |
0.197 (1.00) |
0.00033 (0.221) |
0.131 (1.00) |
0.757 (1.00) |
0.00479 (1.00) |
0.0824 (1.00) |
0.131 (1.00) |
0.154 (1.00) |
0.113 (1.00) |
0.0288 (1.00) |
5p gain | 201 (39%) | 321 |
1e-05 (0.008) |
0.00224 (1.00) |
0.962 (1.00) |
0.834 (1.00) |
0.112 (1.00) |
0.438 (1.00) |
0.573 (1.00) |
0.0328 (1.00) |
0.837 (1.00) |
0.661 (1.00) |
6p gain | 83 (16%) | 439 |
0.00036 (0.24) |
0.00225 (1.00) |
0.499 (1.00) |
0.745 (1.00) |
0.659 (1.00) |
0.037 (1.00) |
0.605 (1.00) |
0.0713 (1.00) |
0.32 (1.00) |
0.66 (1.00) |
9q gain | 139 (27%) | 383 |
1e-05 (0.008) |
0.00323 (1.00) |
0.175 (1.00) |
0.255 (1.00) |
0.285 (1.00) |
0.0183 (1.00) |
0.398 (1.00) |
0.0511 (1.00) |
0.297 (1.00) |
0.441 (1.00) |
12q gain | 89 (17%) | 433 |
2e-05 (0.0145) |
0.00093 (0.599) |
0.142 (1.00) |
0.183 (1.00) |
0.0738 (1.00) |
0.00291 (1.00) |
0.664 (1.00) |
0.783 (1.00) |
0.45 (1.00) |
0.792 (1.00) |
13q gain | 57 (11%) | 465 |
1e-05 (0.008) |
0.00266 (1.00) |
0.595 (1.00) |
0.734 (1.00) |
0.0232 (1.00) |
0.0383 (1.00) |
0.123 (1.00) |
0.241 (1.00) |
0.0275 (1.00) |
0.0157 (1.00) |
15q gain | 72 (14%) | 450 |
8e-05 (0.0557) |
0.0069 (1.00) |
0.385 (1.00) |
0.586 (1.00) |
0.215 (1.00) |
0.568 (1.00) |
0.886 (1.00) |
0.00623 (1.00) |
0.0342 (1.00) |
0.524 (1.00) |
17q gain | 87 (17%) | 435 |
1e-05 (0.008) |
0.00064 (0.419) |
0.585 (1.00) |
0.677 (1.00) |
0.129 (1.00) |
0.0312 (1.00) |
0.417 (1.00) |
0.00355 (1.00) |
0.0619 (1.00) |
0.0997 (1.00) |
19q gain | 78 (15%) | 444 |
0.372 (1.00) |
0.00031 (0.208) |
0.962 (1.00) |
0.785 (1.00) |
0.0169 (1.00) |
0.00079 (0.511) |
0.00054 (0.355) |
0.0788 (1.00) |
0.497 (1.00) |
0.0647 (1.00) |
xq gain | 90 (17%) | 432 |
0.00013 (0.0894) |
0.00095 (0.611) |
0.253 (1.00) |
0.825 (1.00) |
0.428 (1.00) |
0.369 (1.00) |
0.126 (1.00) |
0.505 (1.00) |
0.0303 (1.00) |
0.291 (1.00) |
10p loss | 156 (30%) | 366 |
1e-05 (0.008) |
0.00337 (1.00) |
0.321 (1.00) |
0.231 (1.00) |
0.0522 (1.00) |
0.0832 (1.00) |
0.0656 (1.00) |
0.0911 (1.00) |
0.0226 (1.00) |
0.24 (1.00) |
10q loss | 113 (22%) | 409 |
1e-05 (0.008) |
0.00071 (0.463) |
0.208 (1.00) |
0.302 (1.00) |
0.0141 (1.00) |
0.0102 (1.00) |
0.0289 (1.00) |
0.146 (1.00) |
0.121 (1.00) |
0.164 (1.00) |
15q loss | 103 (20%) | 419 |
1e-05 (0.008) |
0.167 (1.00) |
0.628 (1.00) |
0.346 (1.00) |
0.122 (1.00) |
0.288 (1.00) |
0.606 (1.00) |
0.271 (1.00) |
0.079 (1.00) |
0.94 (1.00) |
16p loss | 63 (12%) | 459 |
2e-05 (0.0145) |
0.0113 (1.00) |
0.865 (1.00) |
0.0794 (1.00) |
0.00228 (1.00) |
0.0585 (1.00) |
0.66 (1.00) |
0.634 (1.00) |
0.179 (1.00) |
0.896 (1.00) |
17p loss | 107 (20%) | 415 |
0.00014 (0.0958) |
0.00096 (0.616) |
0.388 (1.00) |
0.759 (1.00) |
0.528 (1.00) |
0.117 (1.00) |
0.395 (1.00) |
0.109 (1.00) |
0.343 (1.00) |
0.857 (1.00) |
18p loss | 104 (20%) | 418 |
0.00164 (1.00) |
2e-05 (0.0145) |
0.541 (1.00) |
0.331 (1.00) |
0.273 (1.00) |
0.111 (1.00) |
0.618 (1.00) |
0.0126 (1.00) |
0.223 (1.00) |
0.58 (1.00) |
20p loss | 47 (9%) | 475 |
1e-05 (0.008) |
0.0263 (1.00) |
0.494 (1.00) |
0.774 (1.00) |
0.115 (1.00) |
0.349 (1.00) |
0.325 (1.00) |
0.0219 (1.00) |
0.116 (1.00) |
0.096 (1.00) |
22q loss | 75 (14%) | 447 |
0.0001 (0.0692) |
0.00311 (1.00) |
0.667 (1.00) |
0.656 (1.00) |
0.00122 (0.78) |
0.159 (1.00) |
0.00157 (0.999) |
0.518 (1.00) |
0.0175 (1.00) |
0.0473 (1.00) |
4p gain | 41 (8%) | 481 |
0.0225 (1.00) |
0.00197 (1.00) |
0.694 (1.00) |
0.356 (1.00) |
0.105 (1.00) |
0.374 (1.00) |
0.0737 (1.00) |
0.646 (1.00) |
0.733 (1.00) |
0.325 (1.00) |
4q gain | 37 (7%) | 485 |
0.902 (1.00) |
0.198 (1.00) |
1 (1.00) |
0.766 (1.00) |
0.68 (1.00) |
0.129 (1.00) |
1 (1.00) |
0.909 (1.00) |
0.684 (1.00) |
0.738 (1.00) |
5q gain | 68 (13%) | 454 |
0.0488 (1.00) |
0.595 (1.00) |
0.618 (1.00) |
0.888 (1.00) |
0.761 (1.00) |
0.758 (1.00) |
0.673 (1.00) |
0.449 (1.00) |
0.86 (1.00) |
0.311 (1.00) |
6q gain | 63 (12%) | 459 |
0.00261 (1.00) |
0.0304 (1.00) |
0.192 (1.00) |
0.0735 (1.00) |
0.0764 (1.00) |
0.0315 (1.00) |
0.24 (1.00) |
0.913 (1.00) |
0.065 (1.00) |
0.298 (1.00) |
8p gain | 155 (30%) | 367 |
0.0229 (1.00) |
0.247 (1.00) |
0.586 (1.00) |
0.642 (1.00) |
0.525 (1.00) |
0.225 (1.00) |
0.597 (1.00) |
0.787 (1.00) |
0.451 (1.00) |
0.134 (1.00) |
10q gain | 34 (7%) | 488 |
0.00452 (1.00) |
0.241 (1.00) |
0.097 (1.00) |
0.402 (1.00) |
0.623 (1.00) |
0.16 (1.00) |
0.876 (1.00) |
0.038 (1.00) |
0.217 (1.00) |
0.614 (1.00) |
21q gain | 35 (7%) | 487 |
0.0638 (1.00) |
0.0402 (1.00) |
0.0142 (1.00) |
0.127 (1.00) |
0.00732 (1.00) |
0.00936 (1.00) |
0.0953 (1.00) |
0.252 (1.00) |
0.0056 (1.00) |
0.77 (1.00) |
1q loss | 39 (7%) | 483 |
0.0158 (1.00) |
0.139 (1.00) |
0.78 (1.00) |
0.487 (1.00) |
0.0543 (1.00) |
0.0123 (1.00) |
0.0947 (1.00) |
0.00075 (0.488) |
0.409 (1.00) |
0.512 (1.00) |
2p loss | 33 (6%) | 489 |
0.0285 (1.00) |
0.00571 (1.00) |
0.16 (1.00) |
0.0442 (1.00) |
0.0829 (1.00) |
0.428 (1.00) |
0.0571 (1.00) |
0.672 (1.00) |
0.199 (1.00) |
0.37 (1.00) |
2q loss | 46 (9%) | 476 |
0.474 (1.00) |
0.215 (1.00) |
0.871 (1.00) |
0.674 (1.00) |
0.732 (1.00) |
0.548 (1.00) |
0.152 (1.00) |
0.689 (1.00) |
0.403 (1.00) |
0.163 (1.00) |
3q loss | 61 (12%) | 461 |
0.00932 (1.00) |
0.229 (1.00) |
0.338 (1.00) |
0.759 (1.00) |
0.681 (1.00) |
0.202 (1.00) |
1 (1.00) |
0.00724 (1.00) |
0.363 (1.00) |
0.947 (1.00) |
6p loss | 68 (13%) | 454 |
0.00043 (0.284) |
0.00089 (0.574) |
0.028 (1.00) |
0.127 (1.00) |
0.0296 (1.00) |
0.0371 (1.00) |
0.307 (1.00) |
0.686 (1.00) |
0.739 (1.00) |
0.0767 (1.00) |
6q loss | 68 (13%) | 454 |
0.0454 (1.00) |
0.00371 (1.00) |
0.127 (1.00) |
0.122 (1.00) |
0.787 (1.00) |
0.573 (1.00) |
0.759 (1.00) |
0.373 (1.00) |
0.766 (1.00) |
0.0218 (1.00) |
7p loss | 29 (6%) | 493 |
0.0299 (1.00) |
0.00684 (1.00) |
0.0106 (1.00) |
0.627 (1.00) |
0.299 (1.00) |
0.034 (1.00) |
0.256 (1.00) |
0.761 (1.00) |
0.0214 (1.00) |
0.776 (1.00) |
7q loss | 40 (8%) | 482 |
0.366 (1.00) |
0.302 (1.00) |
0.529 (1.00) |
1 (1.00) |
0.261 (1.00) |
0.066 (1.00) |
0.101 (1.00) |
0.935 (1.00) |
0.747 (1.00) |
0.287 (1.00) |
8q loss | 30 (6%) | 492 |
0.0235 (1.00) |
0.288 (1.00) |
0.758 (1.00) |
0.874 (1.00) |
0.639 (1.00) |
0.16 (1.00) |
0.374 (1.00) |
0.415 (1.00) |
0.652 (1.00) |
0.265 (1.00) |
12p loss | 37 (7%) | 485 |
0.731 (1.00) |
0.0499 (1.00) |
0.629 (1.00) |
0.11 (1.00) |
0.93 (1.00) |
0.816 (1.00) |
0.819 (1.00) |
0.799 (1.00) |
0.341 (1.00) |
0.284 (1.00) |
12q loss | 33 (6%) | 489 |
0.0463 (1.00) |
0.00113 (0.723) |
0.863 (1.00) |
0.0965 (1.00) |
0.384 (1.00) |
0.923 (1.00) |
1 (1.00) |
0.19 (1.00) |
0.302 (1.00) |
0.216 (1.00) |
17q loss | 34 (7%) | 488 |
0.0138 (1.00) |
0.113 (1.00) |
0.904 (1.00) |
0.506 (1.00) |
0.443 (1.00) |
0.851 (1.00) |
0.742 (1.00) |
0.947 (1.00) |
0.871 (1.00) |
0.546 (1.00) |
20q loss | 28 (5%) | 494 |
0.00039 (0.259) |
0.00534 (1.00) |
0.21 (1.00) |
0.756 (1.00) |
0.0156 (1.00) |
0.0131 (1.00) |
0.0697 (1.00) |
0.0477 (1.00) |
0.0179 (1.00) |
0.0304 (1.00) |
P value = 0.00013 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
1P GAIN MUTATED | 25 | 30 | 11 | 4 |
1P GAIN WILD-TYPE | 130 | 105 | 178 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
1Q GAIN MUTATED | 36 | 57 | 21 | 7 |
1Q GAIN WILD-TYPE | 119 | 78 | 168 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
1Q GAIN MUTATED | 7 | 27 | 25 | 38 | 15 | 5 | 4 |
1Q GAIN WILD-TYPE | 77 | 52 | 71 | 54 | 63 | 70 | 14 |
P value = 2e-04 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 134 | 152 |
1Q GAIN MUTATED | 67 | 23 | 24 |
1Q GAIN WILD-TYPE | 140 | 111 | 128 |
P value = 0.00018 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 157 | 155 | 130 |
1Q GAIN MUTATED | 16 | 28 | 24 | 46 |
1Q GAIN WILD-TYPE | 35 | 129 | 131 | 84 |
P value = 0.00031 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 190 | 142 | 186 |
1Q GAIN MUTATED | 36 | 51 | 34 |
1Q GAIN WILD-TYPE | 154 | 91 | 152 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
2P GAIN MUTATED | 34 | 51 | 9 | 3 |
2P GAIN WILD-TYPE | 121 | 84 | 180 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
2P GAIN MUTATED | 5 | 30 | 18 | 35 | 3 | 5 | 1 |
2P GAIN WILD-TYPE | 79 | 49 | 78 | 57 | 75 | 70 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
2Q GAIN MUTATED | 22 | 43 | 7 | 2 |
2Q GAIN WILD-TYPE | 133 | 92 | 182 | 41 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
2Q GAIN MUTATED | 3 | 25 | 15 | 26 | 1 | 2 | 2 |
2Q GAIN WILD-TYPE | 81 | 54 | 81 | 66 | 77 | 73 | 16 |
P value = 0.00027 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 157 | 155 | 130 |
2Q GAIN MUTATED | 17 | 26 | 12 | 16 |
2Q GAIN WILD-TYPE | 34 | 131 | 143 | 114 |
P value = 0.00033 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
3P GAIN MUTATED | 13 | 11 | 11 | 15 | 26 | 4 | 1 |
3P GAIN WILD-TYPE | 71 | 68 | 85 | 77 | 52 | 71 | 17 |
P value = 5e-05 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
3Q GAIN MUTATED | 82 | 82 | 67 | 23 |
3Q GAIN WILD-TYPE | 73 | 53 | 122 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
3Q GAIN MUTATED | 32 | 46 | 51 | 54 | 46 | 15 | 10 |
3Q GAIN WILD-TYPE | 52 | 33 | 45 | 38 | 32 | 60 | 8 |
P value = 3e-04 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 134 | 152 |
3Q GAIN MUTATED | 118 | 70 | 55 |
3Q GAIN WILD-TYPE | 89 | 64 | 97 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
5P GAIN MUTATED | 80 | 67 | 39 | 15 |
5P GAIN WILD-TYPE | 75 | 68 | 150 | 28 |
P value = 0.00036 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
6P GAIN MUTATED | 35 | 24 | 14 | 10 |
6P GAIN WILD-TYPE | 120 | 111 | 175 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
7P GAIN MUTATED | 69 | 64 | 34 | 16 |
7P GAIN WILD-TYPE | 86 | 71 | 155 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
7P GAIN MUTATED | 22 | 34 | 42 | 51 | 5 | 22 | 7 |
7P GAIN WILD-TYPE | 62 | 45 | 54 | 41 | 73 | 53 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 190 | 142 | 186 |
7P GAIN MUTATED | 67 | 70 | 43 |
7P GAIN WILD-TYPE | 123 | 72 | 143 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
7Q GAIN MUTATED | 36 | 58 | 21 | 14 |
7Q GAIN WILD-TYPE | 119 | 77 | 168 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
7Q GAIN MUTATED | 10 | 27 | 25 | 46 | 5 | 12 | 4 |
7Q GAIN WILD-TYPE | 74 | 52 | 71 | 46 | 73 | 63 | 14 |
P value = 7e-05 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 190 | 142 | 186 |
7Q GAIN MUTATED | 46 | 52 | 30 |
7Q GAIN WILD-TYPE | 144 | 90 | 156 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
8Q GAIN MUTATED | 108 | 82 | 88 | 32 |
8Q GAIN WILD-TYPE | 47 | 53 | 101 | 11 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
8Q GAIN MUTATED | 57 | 42 | 73 | 55 | 30 | 39 | 14 |
8Q GAIN WILD-TYPE | 27 | 37 | 23 | 37 | 48 | 36 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
9P GAIN MUTATED | 19 | 17 | 31 | 35 |
9P GAIN WILD-TYPE | 136 | 118 | 158 | 8 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
9P GAIN MUTATED | 12 | 6 | 16 | 18 | 13 | 34 | 3 |
9P GAIN WILD-TYPE | 72 | 73 | 80 | 74 | 65 | 41 | 15 |
P value = 8e-05 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 72 | 140 | 98 | 116 | 47 |
9P GAIN MUTATED | 8 | 43 | 9 | 29 | 8 |
9P GAIN WILD-TYPE | 64 | 97 | 89 | 87 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
9Q GAIN MUTATED | 30 | 36 | 37 | 36 |
9Q GAIN WILD-TYPE | 125 | 99 | 152 | 7 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
10P GAIN MUTATED | 2 | 18 | 3 | 7 | 5 | 2 | 3 |
10P GAIN WILD-TYPE | 82 | 61 | 93 | 85 | 73 | 73 | 15 |
P value = 0.00017 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 157 | 155 | 130 |
10P GAIN MUTATED | 13 | 6 | 10 | 9 |
10P GAIN WILD-TYPE | 38 | 151 | 145 | 121 |
P value = 0.00013 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
11P GAIN MUTATED | 34 | 10 | 14 | 8 |
11P GAIN WILD-TYPE | 121 | 125 | 175 | 35 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
11P GAIN MUTATED | 3 | 4 | 26 | 13 | 5 | 11 | 4 |
11P GAIN WILD-TYPE | 81 | 75 | 70 | 79 | 73 | 64 | 14 |
P value = 0.00013 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
11Q GAIN MUTATED | 37 | 16 | 13 | 5 |
11Q GAIN WILD-TYPE | 118 | 119 | 176 | 38 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
11Q GAIN MUTATED | 4 | 12 | 24 | 14 | 2 | 10 | 5 |
11Q GAIN WILD-TYPE | 80 | 67 | 72 | 78 | 76 | 65 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
12P GAIN MUTATED | 53 | 61 | 20 | 14 |
12P GAIN WILD-TYPE | 102 | 74 | 169 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
12P GAIN MUTATED | 12 | 34 | 28 | 43 | 18 | 10 | 3 |
12P GAIN WILD-TYPE | 72 | 45 | 68 | 49 | 60 | 65 | 15 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
12Q GAIN MUTATED | 29 | 35 | 13 | 12 |
12Q GAIN WILD-TYPE | 126 | 100 | 176 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
13Q GAIN MUTATED | 35 | 12 | 8 | 2 |
13Q GAIN WILD-TYPE | 120 | 123 | 181 | 41 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
14Q GAIN MUTATED | 73 | 42 | 19 | 17 |
14Q GAIN WILD-TYPE | 82 | 93 | 170 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
14Q GAIN MUTATED | 21 | 26 | 40 | 35 | 4 | 19 | 6 |
14Q GAIN WILD-TYPE | 63 | 53 | 56 | 57 | 74 | 56 | 12 |
P value = 5e-05 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 72 | 140 | 98 | 116 | 47 |
14Q GAIN MUTATED | 22 | 52 | 18 | 45 | 4 |
14Q GAIN WILD-TYPE | 50 | 88 | 80 | 71 | 43 |
P value = 8e-05 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
15Q GAIN MUTATED | 29 | 28 | 11 | 4 |
15Q GAIN WILD-TYPE | 126 | 107 | 178 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
16P GAIN MUTATED | 52 | 34 | 14 | 7 |
16P GAIN WILD-TYPE | 103 | 101 | 175 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
16P GAIN MUTATED | 13 | 32 | 29 | 18 | 7 | 3 | 5 |
16P GAIN WILD-TYPE | 71 | 47 | 67 | 74 | 71 | 72 | 13 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 190 | 142 | 186 |
16P GAIN MUTATED | 42 | 44 | 20 |
16P GAIN WILD-TYPE | 148 | 98 | 166 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
16Q GAIN MUTATED | 56 | 32 | 14 | 5 |
16Q GAIN WILD-TYPE | 99 | 103 | 175 | 38 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
16Q GAIN MUTATED | 13 | 26 | 32 | 20 | 7 | 5 | 4 |
16Q GAIN WILD-TYPE | 71 | 53 | 64 | 72 | 71 | 70 | 14 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 190 | 142 | 186 |
16Q GAIN MUTATED | 48 | 39 | 19 |
16Q GAIN WILD-TYPE | 142 | 103 | 167 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
17P GAIN MUTATED | 21 | 33 | 7 | 6 |
17P GAIN WILD-TYPE | 134 | 102 | 182 | 37 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
17P GAIN MUTATED | 7 | 13 | 13 | 26 | 3 | 4 | 1 |
17P GAIN WILD-TYPE | 77 | 66 | 83 | 66 | 75 | 71 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
17Q GAIN MUTATED | 24 | 41 | 13 | 9 |
17Q GAIN WILD-TYPE | 131 | 94 | 176 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
18P GAIN MUTATED | 49 | 48 | 18 | 8 |
18P GAIN WILD-TYPE | 106 | 87 | 171 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
18P GAIN MUTATED | 7 | 35 | 25 | 27 | 18 | 8 | 3 |
18P GAIN WILD-TYPE | 77 | 44 | 71 | 65 | 60 | 67 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 157 | 155 | 130 |
18P GAIN MUTATED | 26 | 37 | 21 | 32 |
18P GAIN WILD-TYPE | 25 | 120 | 134 | 98 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
18Q GAIN MUTATED | 1 | 14 | 5 | 11 | 18 | 3 | 1 |
18Q GAIN WILD-TYPE | 83 | 65 | 91 | 81 | 60 | 72 | 17 |
P value = 0.00016 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 157 | 155 | 130 |
18Q GAIN MUTATED | 9 | 10 | 7 | 24 |
18Q GAIN WILD-TYPE | 42 | 147 | 148 | 106 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 221 | 152 | 145 |
18Q GAIN MUTATED | 37 | 4 | 12 |
18Q GAIN WILD-TYPE | 184 | 148 | 133 |
P value = 4e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 72 | 140 | 98 | 116 | 47 |
18Q GAIN MUTATED | 8 | 4 | 21 | 7 | 6 |
18Q GAIN WILD-TYPE | 64 | 136 | 77 | 109 | 41 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
19P GAIN MUTATED | 2 | 7 | 5 | 21 | 17 | 3 | 1 |
19P GAIN WILD-TYPE | 82 | 72 | 91 | 71 | 61 | 72 | 17 |
P value = 0.00022 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 157 | 155 | 130 |
19P GAIN MUTATED | 4 | 8 | 10 | 26 |
19P GAIN WILD-TYPE | 47 | 149 | 145 | 104 |
P value = 0.00036 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 221 | 152 | 145 |
19P GAIN MUTATED | 38 | 10 | 8 |
19P GAIN WILD-TYPE | 183 | 142 | 137 |
P value = 0.00031 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
19Q GAIN MUTATED | 4 | 12 | 11 | 23 | 20 | 6 | 2 |
19Q GAIN WILD-TYPE | 80 | 67 | 85 | 69 | 58 | 69 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
20P GAIN MUTATED | 80 | 49 | 44 | 17 |
20P GAIN WILD-TYPE | 75 | 86 | 145 | 26 |
P value = 4e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
20P GAIN MUTATED | 26 | 27 | 54 | 40 | 19 | 17 | 7 |
20P GAIN WILD-TYPE | 58 | 52 | 42 | 52 | 59 | 58 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
20Q GAIN MUTATED | 88 | 54 | 41 | 18 |
20Q GAIN WILD-TYPE | 67 | 81 | 148 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
20Q GAIN MUTATED | 27 | 35 | 54 | 41 | 15 | 20 | 9 |
20Q GAIN WILD-TYPE | 57 | 44 | 42 | 51 | 63 | 55 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
22Q GAIN MUTATED | 34 | 52 | 20 | 6 |
22Q GAIN WILD-TYPE | 121 | 83 | 169 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
22Q GAIN MUTATED | 15 | 22 | 24 | 43 | 5 | 1 | 2 |
22Q GAIN WILD-TYPE | 69 | 57 | 72 | 49 | 73 | 74 | 16 |
P value = 0.00036 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 221 | 152 | 145 |
22Q GAIN MUTATED | 60 | 17 | 35 |
22Q GAIN WILD-TYPE | 161 | 135 | 110 |
P value = 0.00013 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
XQ GAIN MUTATED | 38 | 29 | 15 | 8 |
XQ GAIN WILD-TYPE | 117 | 106 | 174 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
1P LOSS MUTATED | 18 | 30 | 7 | 3 |
1P LOSS WILD-TYPE | 137 | 105 | 182 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
1P LOSS MUTATED | 6 | 7 | 8 | 30 | 2 | 4 | 1 |
1P LOSS WILD-TYPE | 78 | 72 | 88 | 62 | 76 | 71 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
3P LOSS MUTATED | 123 | 102 | 45 | 27 |
3P LOSS WILD-TYPE | 32 | 33 | 144 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
3P LOSS MUTATED | 36 | 60 | 73 | 70 | 15 | 27 | 16 |
3P LOSS WILD-TYPE | 48 | 19 | 23 | 22 | 63 | 48 | 2 |
P value = 8e-05 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 157 | 155 | 130 |
3P LOSS MUTATED | 38 | 104 | 78 | 58 |
3P LOSS WILD-TYPE | 13 | 53 | 77 | 72 |
P value = 6e-05 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 72 | 140 | 98 | 116 | 47 |
3P LOSS MUTATED | 48 | 77 | 61 | 70 | 12 |
3P LOSS WILD-TYPE | 24 | 63 | 37 | 46 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
4P LOSS MUTATED | 67 | 89 | 24 | 14 |
4P LOSS WILD-TYPE | 88 | 46 | 165 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
4P LOSS MUTATED | 17 | 43 | 29 | 61 | 21 | 12 | 11 |
4P LOSS WILD-TYPE | 67 | 36 | 67 | 31 | 57 | 63 | 7 |
P value = 0.00012 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 157 | 155 | 130 |
4P LOSS MUTATED | 26 | 65 | 36 | 54 |
4P LOSS WILD-TYPE | 25 | 92 | 119 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
4Q LOSS MUTATED | 51 | 70 | 17 | 13 |
4Q LOSS WILD-TYPE | 104 | 65 | 172 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
4Q LOSS MUTATED | 14 | 32 | 27 | 48 | 15 | 11 | 4 |
4Q LOSS WILD-TYPE | 70 | 47 | 69 | 44 | 63 | 64 | 14 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
5P LOSS MUTATED | 18 | 22 | 4 | 7 |
5P LOSS WILD-TYPE | 137 | 113 | 185 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
5P LOSS MUTATED | 1 | 15 | 14 | 16 | 2 | 2 | 1 |
5P LOSS WILD-TYPE | 83 | 64 | 82 | 76 | 76 | 73 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
5Q LOSS MUTATED | 62 | 76 | 16 | 10 |
5Q LOSS WILD-TYPE | 93 | 59 | 173 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
5Q LOSS MUTATED | 14 | 46 | 41 | 45 | 6 | 4 | 8 |
5Q LOSS WILD-TYPE | 70 | 33 | 55 | 47 | 72 | 71 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 157 | 155 | 130 |
5Q LOSS MUTATED | 29 | 58 | 27 | 42 |
5Q LOSS WILD-TYPE | 22 | 99 | 128 | 88 |
P value = 0.00024 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 190 | 142 | 186 |
5Q LOSS MUTATED | 67 | 57 | 38 |
5Q LOSS WILD-TYPE | 123 | 85 | 148 |
P value = 0.00019 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 72 | 140 | 98 | 116 | 47 |
5Q LOSS MUTATED | 21 | 45 | 44 | 33 | 4 |
5Q LOSS WILD-TYPE | 51 | 95 | 54 | 83 | 43 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
8P LOSS MUTATED | 87 | 46 | 36 | 18 |
8P LOSS WILD-TYPE | 68 | 89 | 153 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
8P LOSS MUTATED | 29 | 27 | 52 | 39 | 10 | 25 | 5 |
8P LOSS WILD-TYPE | 55 | 52 | 44 | 53 | 68 | 50 | 13 |
P value = 0.00015 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 72 | 140 | 98 | 116 | 47 |
8P LOSS MUTATED | 30 | 60 | 28 | 48 | 5 |
8P LOSS WILD-TYPE | 42 | 80 | 70 | 68 | 42 |
P value = 5e-05 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 244 | 89 |
8P LOSS MUTATED | 63 | 65 | 43 |
8P LOSS WILD-TYPE | 77 | 179 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
9P LOSS MUTATED | 79 | 81 | 25 | 1 |
9P LOSS WILD-TYPE | 76 | 54 | 164 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
9P LOSS MUTATED | 20 | 51 | 37 | 52 | 9 | 8 | 9 |
9P LOSS WILD-TYPE | 64 | 28 | 59 | 40 | 69 | 67 | 9 |
P value = 0.00012 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 157 | 155 | 130 |
9P LOSS MUTATED | 33 | 56 | 48 | 38 |
9P LOSS WILD-TYPE | 18 | 101 | 107 | 92 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 190 | 142 | 186 |
9P LOSS MUTATED | 64 | 72 | 48 |
9P LOSS WILD-TYPE | 126 | 70 | 138 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 72 | 140 | 98 | 116 | 47 |
9P LOSS MUTATED | 32 | 40 | 53 | 34 | 7 |
9P LOSS WILD-TYPE | 40 | 100 | 45 | 82 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
9Q LOSS MUTATED | 41 | 32 | 13 | 1 |
9Q LOSS WILD-TYPE | 114 | 103 | 176 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
9Q LOSS MUTATED | 5 | 26 | 17 | 26 | 4 | 4 | 5 |
9Q LOSS WILD-TYPE | 79 | 53 | 79 | 66 | 74 | 71 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
10P LOSS MUTATED | 68 | 46 | 27 | 15 |
10P LOSS WILD-TYPE | 87 | 89 | 162 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
10Q LOSS MUTATED | 40 | 47 | 19 | 7 |
10Q LOSS WILD-TYPE | 115 | 88 | 170 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
11P LOSS MUTATED | 38 | 71 | 26 | 6 |
11P LOSS WILD-TYPE | 117 | 64 | 163 | 37 |
P value = 0.00012 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
11P LOSS MUTATED | 22 | 27 | 21 | 38 | 21 | 7 | 5 |
11P LOSS WILD-TYPE | 62 | 52 | 75 | 54 | 57 | 68 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
11Q LOSS MUTATED | 43 | 71 | 44 | 14 |
11Q LOSS WILD-TYPE | 112 | 64 | 145 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
11Q LOSS MUTATED | 21 | 23 | 29 | 39 | 44 | 11 | 5 |
11Q LOSS WILD-TYPE | 63 | 56 | 67 | 53 | 34 | 64 | 13 |
P value = 6e-05 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 157 | 155 | 130 |
11Q LOSS MUTATED | 10 | 45 | 41 | 63 |
11Q LOSS WILD-TYPE | 41 | 112 | 114 | 67 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
13Q LOSS MUTATED | 37 | 79 | 36 | 15 |
13Q LOSS WILD-TYPE | 118 | 56 | 153 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
13Q LOSS MUTATED | 18 | 37 | 30 | 43 | 25 | 13 | 1 |
13Q LOSS WILD-TYPE | 66 | 42 | 66 | 49 | 53 | 62 | 17 |
P value = 4e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 134 | 152 |
14Q LOSS MUTATED | 37 | 11 | 6 |
14Q LOSS WILD-TYPE | 170 | 123 | 146 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 72 | 140 | 98 | 116 | 47 |
14Q LOSS MUTATED | 8 | 6 | 24 | 8 | 9 |
14Q LOSS WILD-TYPE | 64 | 134 | 74 | 108 | 38 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
15Q LOSS MUTATED | 43 | 26 | 17 | 17 |
15Q LOSS WILD-TYPE | 112 | 109 | 172 | 26 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
16P LOSS MUTATED | 17 | 28 | 9 | 9 |
16P LOSS WILD-TYPE | 138 | 107 | 180 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
16Q LOSS MUTATED | 5 | 12 | 4 | 26 | 27 | 4 | 3 |
16Q LOSS WILD-TYPE | 79 | 67 | 92 | 66 | 51 | 71 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 134 | 152 |
16Q LOSS MUTATED | 57 | 15 | 5 |
16Q LOSS WILD-TYPE | 150 | 119 | 147 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 157 | 155 | 130 |
16Q LOSS MUTATED | 9 | 17 | 8 | 43 |
16Q LOSS WILD-TYPE | 42 | 140 | 147 | 87 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 72 | 140 | 98 | 116 | 47 |
16Q LOSS MUTATED | 9 | 11 | 32 | 9 | 10 |
16Q LOSS WILD-TYPE | 63 | 129 | 66 | 107 | 37 |
P value = 0.00014 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
17P LOSS MUTATED | 41 | 37 | 20 | 9 |
17P LOSS WILD-TYPE | 114 | 98 | 169 | 34 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
18P LOSS MUTATED | 18 | 15 | 23 | 30 | 2 | 11 | 5 |
18P LOSS WILD-TYPE | 66 | 64 | 73 | 62 | 76 | 64 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
18Q LOSS MUTATED | 106 | 51 | 33 | 21 |
18Q LOSS WILD-TYPE | 49 | 84 | 156 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
18Q LOSS MUTATED | 35 | 40 | 56 | 47 | 2 | 22 | 9 |
18Q LOSS WILD-TYPE | 49 | 39 | 40 | 45 | 76 | 53 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 157 | 155 | 130 |
18Q LOSS MUTATED | 27 | 80 | 67 | 26 |
18Q LOSS WILD-TYPE | 24 | 77 | 88 | 104 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 190 | 142 | 186 |
18Q LOSS MUTATED | 93 | 65 | 51 |
18Q LOSS WILD-TYPE | 97 | 77 | 135 |
P value = 8e-05 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 72 | 140 | 98 | 116 | 47 |
18Q LOSS MUTATED | 29 | 65 | 31 | 59 | 7 |
18Q LOSS WILD-TYPE | 43 | 75 | 67 | 57 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
19P LOSS MUTATED | 48 | 26 | 16 | 8 |
19P LOSS WILD-TYPE | 107 | 109 | 173 | 35 |
P value = 0.00014 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
19P LOSS MUTATED | 8 | 13 | 33 | 23 | 7 | 10 | 4 |
19P LOSS WILD-TYPE | 76 | 66 | 63 | 69 | 71 | 65 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
19Q LOSS MUTATED | 37 | 32 | 9 | 8 |
19Q LOSS WILD-TYPE | 118 | 103 | 180 | 35 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
19Q LOSS MUTATED | 6 | 13 | 27 | 26 | 5 | 7 | 2 |
19Q LOSS WILD-TYPE | 78 | 66 | 69 | 66 | 73 | 68 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
20P LOSS MUTATED | 14 | 27 | 5 | 1 |
20P LOSS WILD-TYPE | 141 | 108 | 184 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
21Q LOSS MUTATED | 77 | 66 | 23 | 18 |
21Q LOSS WILD-TYPE | 78 | 69 | 166 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
21Q LOSS MUTATED | 22 | 29 | 50 | 47 | 9 | 19 | 8 |
21Q LOSS WILD-TYPE | 62 | 50 | 46 | 45 | 69 | 56 | 10 |
P value = 0.00033 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 190 | 142 | 186 |
21Q LOSS MUTATED | 79 | 59 | 45 |
21Q LOSS WILD-TYPE | 111 | 83 | 141 |
P value = 1e-04 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
22Q LOSS MUTATED | 34 | 17 | 13 | 11 |
22Q LOSS WILD-TYPE | 121 | 118 | 176 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 155 | 135 | 189 | 43 |
XQ LOSS MUTATED | 35 | 36 | 14 | 1 |
XQ LOSS WILD-TYPE | 120 | 99 | 175 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 84 | 79 | 96 | 92 | 78 | 75 | 18 |
XQ LOSS MUTATED | 6 | 14 | 19 | 30 | 12 | 2 | 3 |
XQ LOSS WILD-TYPE | 78 | 65 | 77 | 62 | 66 | 73 | 15 |
-
Copy number data file = transformed.cor.cli.txt
-
Molecular subtypes file = HNSC-TP.transferedmergedcluster.txt
-
Number of patients = 522
-
Number of significantly arm-level cnvs = 80
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.