Clinical Features CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q amp_2q11.2 107 (20%) 415 9.9999e-06 0.0077 9.9999e-06 0.0077 0.50617 1 0.54039 1 0.051129 1 4e-04 0.223 0.0241 1 0.00086999 0.472 0.00244 1 0.078379 1 amp_2q31.2 112 (21%) 410 9.9999e-06 0.0077 9.9999e-06 0.0077 0.24186 1 0.30959 1 0.19055 1 0.01281 1 0.077809 1 0.0065499 1 0.00064999 0.356 0.0093799 1 amp_3q26.33 380 (73%) 142 9.9999e-06 0.0077 9.9999e-06 0.0077 0.13044 1 0.30987 1 9.9999e-06 0.0077 4e-05 0.0241 5e-04 0.276 0.59115 1 0.00019 0.109 0.16474 1 amp_5p15.33 240 (46%) 282 9.9999e-06 0.0077 9.9999e-06 0.0077 0.85593 1 0.83034 1 0.15893 1 0.17681 1 0.49623 1 0.03325 1 0.48048 1 0.98431 1 amp_6p12.1 110 (21%) 412 9.9999e-06 0.0077 3e-05 0.0183 0.45639 1 0.95154 1 0.85471 1 0.01513 1 0.43158 1 0.00252 1 0.071089 1 0.17313 1 amp_6q12 96 (18%) 426 9.9999e-06 0.0077 0.00015 0.0864 0.27555 1 0.89864 1 0.86765 1 0.15956 1 0.30639 1 0.23504 1 0.16316 1 0.41629 1 amp_7p11.2 222 (43%) 300 9.9999e-06 0.0077 9.9999e-06 0.0077 0.997 1 0.6718 1 0.04816 1 0.01033 1 0.48771 1 9.9999e-06 0.0077 0.0015 0.792 0.1226 1 amp_7q21.3 169 (32%) 353 9.9999e-06 0.0077 9.9999e-06 0.0077 0.33339 1 0.44102 1 0.30623 1 0.28083 1 0.04302 1 0.00024 0.136 0.061269 1 0.87457 1 amp_8p11.23 161 (31%) 361 9.9999e-06 0.0077 0.00489 1 0.80697 1 0.87279 1 0.12382 1 0.01055 1 0.00212 1 0.01071 1 0.22119 1 0.13095 1 amp_8q11.21 310 (59%) 212 9.9999e-06 0.0077 9.9999e-06 0.0077 0.095879 1 0.63037 1 0.00164 0.859 0.00016 0.092 0.03376 1 0.0051699 1 0.00093999 0.508 0.00206 1 amp_8q24.21 386 (74%) 136 9.9999e-06 0.0077 9.9999e-06 0.0077 0.31498 1 0.44478 1 0.01301 1 4e-05 0.0241 0.067979 1 0.00101 0.544 0.00021 0.12 0.0083099 1 amp_9p24.1 126 (24%) 396 9.9999e-06 0.0077 9.9999e-06 0.0077 0.13606 1 0.24939 1 0.0029 1 0.00089999 0.487 0.077179 1 0.00115 0.618 0.00031 0.174 0.04079 1 amp_9p23 124 (24%) 398 9.9999e-06 0.0077 9.9999e-06 0.0077 0.38721 1 0.42464 1 0.00317 1 0.00383 1 0.077569 1 0.00228 1 0.00123 0.658 0.21357 1 amp_9p13.3 139 (27%) 383 9.9999e-06 0.0077 0.00231 1 0.48506 1 0.12209 1 0.00074999 0.409 0.01538 1 0.01369 1 0.059289 1 0.04203 1 0.42012 1 amp_9q34.3 177 (34%) 345 9.9999e-06 0.0077 0.0146 1 0.23788 1 0.02294 1 0.95656 1 0.38369 1 0.58024 1 0.085829 1 0.62529 1 0.31809 1 amp_11p13 102 (20%) 420 0.00277 1 0.00085999 0.467 0.46028 1 0.18112 1 0.95921 1 0.21951 1 0.75278 1 0.4921 1 0.0055399 1 0.14961 1 amp_11q13.3 229 (44%) 293 9.9999e-06 0.0077 9.9999e-06 0.0077 0.83277 1 0.72786 1 0.17094 1 0.13363 1 0.78176 1 0.00426 1 0.00142 0.754 0.061899 1 amp_12p13.33 167 (32%) 355 9.9999e-06 0.0077 9.9999e-06 0.0077 0.04229 1 0.52131 1 0.0095399 1 0.00198 1 0.00159 0.835 0.086079 1 0.00185 0.958 0.38223 1 amp_12q15 103 (20%) 419 2e-05 0.0125 0.00035 0.196 0.066369 1 0.20534 1 0.12809 1 0.068099 1 0.74342 1 0.32099 1 0.95849 1 0.37417 1 amp_13q22.1 105 (20%) 417 9.9999e-06 0.0077 9.9999e-06 0.0077 0.14833 1 0.15579 1 0.32912 1 0.28929 1 0.21503 1 0.16028 1 0.014 1 0.26872 1 amp_13q34 106 (20%) 416 9.9999e-06 0.0077 4e-05 0.0241 0.22604 1 0.49212 1 0.15631 1 0.12148 1 0.097009 1 0.13272 1 0.01615 1 0.12698 1 amp_15q26.3 105 (20%) 417 9.9999e-06 0.0077 0.0066599 1 0.45419 1 0.33009 1 0.60403 1 0.9825 1 0.16165 1 0.051309 1 0.04848 1 0.54113 1 amp_17q12 91 (17%) 431 9.9999e-06 0.0077 2e-05 0.0125 0.18458 1 0.72224 1 0.01111 1 0.01943 1 0.00303 1 6.9999e-05 0.0414 0.0080099 1 0.64801 1 amp_18p11.31 156 (30%) 366 9.9999e-06 0.0077 9.9999e-06 0.0077 0.52325 1 0.51333 1 0.083029 1 9.9999e-06 0.0077 0.32282 1 0.00017 0.0976 9.9999e-06 0.0077 0.03202 1 amp_18q11.2 106 (20%) 416 9.9999e-06 0.0077 7.9999e-05 0.047 0.52065 1 0.20435 1 0.36478 1 0.014 1 0.01291 1 0.02816 1 0.01622 1 0.20205 1 amp_19p13.2 60 (11%) 462 0.16159 1 9.9999e-06 0.0077 0.03948 1 1 1 0.00055999 0.309 8.9999e-05 0.0526 0.02082 1 0.22999 1 0.25446 1 0.18047 1 amp_20p12.2 191 (37%) 331 3e-05 0.0183 4e-05 0.0241 0.87163 1 0.93394 1 0.089949 1 0.0095199 1 0.10861 1 0.02253 1 0.66409 1 0.04311 1 amp_20q11.22 227 (43%) 295 9.9999e-06 0.0077 2e-05 0.0125 0.50538 1 0.83176 1 0.10811 1 0.01034 1 0.29487 1 0.02374 1 0.83372 1 0.073349 1 amp_xq28 150 (29%) 372 9.9999e-06 0.0077 2e-05 0.0125 0.64069 1 0.19724 1 0.30459 1 0.14529 1 0.25523 1 0.093009 1 0.26044 1 0.063239 1 del_1p36.21 95 (18%) 427 9.9999e-06 0.0077 9.9999e-06 0.0077 0.00072999 0.399 0.0056199 1 9.9999e-06 0.0077 6.9999e-05 0.0414 0.00147 0.778 0.04014 1 0.00114 0.613 0.01149 1 del_1p13.2 133 (25%) 389 9.9999e-06 0.0077 9.9999e-06 0.0077 0.02449 1 0.0068399 1 0.02497 1 0.3787 1 0.00175 0.912 0.00021 0.12 0.00041 0.228 0.18403 1 del_1q44 48 (9%) 474 0.00044 0.244 0.01697 1 0.72974 1 0.90903 1 0.01462 1 0.00428 1 0.0018 0.934 0.04542 1 0.01834 1 0.43581 1 del_2q21.2 78 (15%) 444 0.91292 1 0.02129 1 0.7023 1 0.21141 1 0.02696 1 0.0065399 1 0.00239 1 0.25956 1 0.03928 1 0.03538 1 del_2q22.1 121 (23%) 401 0.0193 1 2e-05 0.0125 0.34855 1 0.83834 1 0.27566 1 0.25304 1 0.1637 1 0.00144 0.763 0.03098 1 0.04119 1 del_2q36.2 157 (30%) 365 9.9999e-06 0.0077 9.9999e-06 0.0077 0.093139 1 0.85677 1 0.01094 1 0.01365 1 0.059849 1 0.02429 1 0.29833 1 0.04935 1 del_3p26.2 348 (67%) 174 9.9999e-06 0.0077 9.9999e-06 0.0077 0.52468 1 0.21041 1 7.9999e-05 0.047 9.9999e-06 0.0077 0.01822 1 9.9999e-06 0.0077 4e-05 0.0241 0.0067499 1 del_3p24.1 368 (70%) 154 9.9999e-06 0.0077 9.9999e-06 0.0077 0.4179 1 0.1166 1 0.00169 0.882 3e-05 0.0183 0.00264 1 5e-05 0.0297 2e-05 0.0125 0.02953 1 del_3p14.2 372 (71%) 150 9.9999e-06 0.0077 9.9999e-06 0.0077 0.61161 1 0.17446 1 0.01046 1 2e-05 0.0125 0.089839 1 0.00036 0.201 3e-05 0.0183 0.31646 1 del_3p12.1 343 (66%) 179 9.9999e-06 0.0077 9.9999e-06 0.0077 0.83132 1 0.90065 1 0.02074 1 3e-05 0.0183 0.060149 1 0.00052999 0.293 9.9999e-06 0.0077 0.51562 1 del_4p15.2 208 (40%) 314 9.9999e-06 0.0077 9.9999e-06 0.0077 0.01172 1 0.33107 1 0.00011 0.0637 0.00060999 0.335 0.0074099 1 0.02989 1 0.00024 0.136 0.01679 1 del_4q21.3 156 (30%) 366 9.9999e-06 0.0077 9.9999e-06 0.0077 0.28347 1 0.04693 1 0.01037 1 0.00152 0.801 0.40071 1 0.03125 1 0.19798 1 0.93626 1 del_4q22.1 169 (32%) 353 9.9999e-06 0.0077 9.9999e-06 0.0077 0.25049 1 0.075519 1 0.0084099 1 0.00277 1 0.26429 1 0.03816 1 0.091219 1 0.3942 1 del_4q35.2 213 (41%) 309 9.9999e-06 0.0077 9.9999e-06 0.0077 0.84459 1 0.18345 1 0.0118 1 0.1192 1 0.15043 1 0.0058299 1 0.11926 1 0.24135 1 del_5q12.1 215 (41%) 307 9.9999e-06 0.0077 9.9999e-06 0.0077 0.088419 1 0.35948 1 0.062649 1 9.9999e-06 0.0077 0.086389 1 3e-05 0.0183 4e-04 0.223 0.04786 1 del_5q15 226 (43%) 296 9.9999e-06 0.0077 9.9999e-06 0.0077 0.14461 1 0.42966 1 0.10752 1 9.9999e-06 0.0077 0.10753 1 9.9999e-06 0.0077 0.00013 0.075 0.34197 1 del_5q35.3 199 (38%) 323 9.9999e-06 0.0077 9.9999e-06 0.0077 0.23872 1 0.72211 1 0.01961 1 9.9999e-06 0.0077 0.24007 1 2e-05 0.0125 0.00019 0.109 0.11664 1 del_6p25.3 96 (18%) 426 8.9999e-05 0.0526 9.9999e-06 0.0077 0.04161 1 0.01036 1 0.002 1 0.097389 1 0.17581 1 0.72694 1 0.22982 1 0.65992 1 del_7q31.1 77 (15%) 445 0.00221 1 0.28087 1 0.56965 1 0.37763 1 0.51023 1 0.21547 1 0.72369 1 0.17415 1 0.48074 1 0.69272 1 del_7q36.1 132 (25%) 390 0.00029 0.163 0.39301 1 0.04456 1 0.67889 1 0.76887 1 0.70578 1 0.79072 1 0.32952 1 0.99312 1 0.97861 1 del_8p23.2 304 (58%) 218 9.9999e-06 0.0077 9.9999e-06 0.0077 0.28056 1 0.32425 1 0.00124 0.662 5.9999e-05 0.0356 0.01772 1 0.00419 1 9.9999e-06 0.0077 3e-05 0.0183 del_9p23 239 (46%) 283 9.9999e-06 0.0077 9.9999e-06 0.0077 0.28284 1 0.11394 1 0.8229 1 0.00022 0.125 0.40657 1 6.9999e-05 0.0414 9.9999e-06 0.0077 0.31098 1 del_9p21.3 302 (58%) 220 9.9999e-06 0.0077 9.9999e-06 0.0077 0.67251 1 0.36312 1 0.14489 1 9.9999e-06 0.0077 0.44175 1 9.9999e-06 0.0077 9.9999e-06 0.0077 0.14165 1 del_9q21.11 108 (21%) 414 9.9999e-06 0.0077 9.9999e-06 0.0077 0.98271 1 0.23981 1 0.85437 1 0.02689 1 0.79597 1 0.00063999 0.351 0.00364 1 0.92026 1 del_9q34.3 79 (15%) 443 5.9999e-05 0.0356 0.00068999 0.377 0.61234 1 0.3711 1 0.43656 1 0.04778 1 0.49573 1 0.0090099 1 0.00355 1 0.95664 1 del_10p15.3 170 (33%) 352 9.9999e-06 0.0077 9.9999e-06 0.0077 0.4739 1 0.70736 1 0.12141 1 0.096309 1 0.01472 1 0.081619 1 0.00024 0.136 0.34255 1 del_10p11.21 162 (31%) 360 9.9999e-06 0.0077 9.9999e-06 0.0077 0.44958 1 0.17265 1 0.15365 1 0.571 1 0.04163 1 0.01512 1 0.02479 1 0.70741 1 del_10q23.31 138 (26%) 384 9.9999e-06 0.0077 9.9999e-06 0.0077 0.13498 1 0.9796 1 9.9999e-05 0.058 2e-05 0.0125 0.02275 1 0.46434 1 0.00023 0.13 0.03237 1 del_11p15.5 163 (31%) 359 9.9999e-06 0.0077 9.9999e-06 0.0077 0.86819 1 0.28177 1 2e-05 0.0125 0.00261 1 9.9999e-06 0.0077 0.00344 1 6.9999e-05 0.0414 0.0076999 1 del_11q23.1 246 (47%) 276 9.9999e-06 0.0077 9.9999e-06 0.0077 0.086959 1 0.16321 1 2e-05 0.0125 9.9999e-06 0.0077 0.0082599 1 0.01413 1 0.073249 1 0.24599 1 del_12q24.33 63 (12%) 459 9.9999e-06 0.0077 2e-05 0.0125 0.61533 1 0.45938 1 0.86306 1 0.56302 1 0.47991 1 0.1204 1 0.12912 1 0.55499 1 del_13q12.11 233 (45%) 289 9.9999e-06 0.0077 9.9999e-06 0.0077 0.15739 1 0.24119 1 0.02199 1 9.9999e-06 0.0077 0.47267 1 0.03026 1 0.01051 1 0.88755 1 del_13q14.2 217 (42%) 305 9.9999e-06 0.0077 9.9999e-06 0.0077 0.10951 1 0.56708 1 2e-05 0.0125 9.9999e-06 0.0077 0.00137 0.729 0.21443 1 0.00166 0.868 0.12803 1 del_14q11.2 75 (14%) 447 0.00028 0.157 0.01592 1 0.31877 1 0.89968 1 0.11813 1 0.27953 1 0.0075799 1 0.03154 1 0.00155 0.815 0.12596 1 del_14q32.32 75 (14%) 447 0.01032 1 9.9999e-06 0.0077 0.01804 1 0.46751 1 9.9999e-06 0.0077 9.9999e-06 0.0077 0.00115 0.618 0.02859 1 9.9999e-06 0.0077 0.00076999 0.419 del_15q15.1 124 (24%) 398 9.9999e-06 0.0077 0.11894 1 0.66767 1 0.41304 1 0.069579 1 0.083299 1 0.70644 1 0.63719 1 0.059199 1 0.63034 1 del_16q23.1 98 (19%) 424 5e-05 0.0297 9.9999e-06 0.0077 0.46797 1 0.45947 1 9.9999e-06 0.0077 9.9999e-06 0.0077 0.0082599 1 0.04035 1 3e-05 0.0183 0.0013 0.693 del_16q23.3 105 (20%) 417 4e-05 0.0241 9.9999e-06 0.0077 0.16226 1 0.23126 1 9.9999e-06 0.0077 9.9999e-06 0.0077 0.02192 1 0.16288 1 7.9999e-05 0.047 0.00345 1 del_17p11.2 99 (19%) 423 9.9999e-06 0.0077 0.00185 0.958 0.89077 1 0.97259 1 0.25922 1 0.27402 1 0.47537 1 0.12642 1 0.02481 1 0.92748 1 del_17q25.3 71 (14%) 451 0.24238 1 2e-05 0.0125 0.43211 1 0.69276 1 0.01218 1 0.00312 1 0.0090499 1 0.050409 1 0.070029 1 0.00343 1 del_18q21.2 268 (51%) 254 9.9999e-06 0.0077 9.9999e-06 0.0077 0.90088 1 0.37704 1 0.0068499 1 9.9999e-06 0.0077 0.03361 1 4e-05 0.0241 8.9999e-05 0.0526 0.079969 1 del_18q23 288 (55%) 234 9.9999e-06 0.0077 9.9999e-06 0.0077 0.25775 1 0.2495 1 0.0052899 1 9.9999e-06 0.0077 0.061239 1 2e-05 0.0125 9.9999e-06 0.0077 0.0212 1 del_19p13.3 175 (34%) 347 9.9999e-06 0.0077 2e-05 0.0125 0.30319 1 0.36542 1 0.01677 1 0.01839 1 0.1173 1 0.00021 0.12 9.9999e-06 0.0077 0.089959 1 del_19q13.43 97 (19%) 425 9.9999e-06 0.0077 2e-05 0.0125 0.32977 1 0.58697 1 0.88209 1 0.34412 1 0.43694 1 0.065849 1 0.23973 1 0.65047 1 del_21q22.3 208 (40%) 314 9.9999e-06 0.0077 9.9999e-06 0.0077 0.55276 1 0.7247 1 0.01684 1 0.01815 1 0.33893 1 8.9999e-05 0.0526 0.00012 0.0694 0.13293 1 del_xp22.2 157 (30%) 365 9.9999e-06 0.0077 9.9999e-06 0.0077 0.31719 1 0.0026 1 0.087569 1 0.0056599 1 0.0053399 1 0.15752 1 0.00471 1 0.3369 1 del_xp21.3 159 (30%) 363 9.9999e-06 0.0077 9.9999e-06 0.0077 0.5603 1 0.057609 1 0.46798 1 0.014 1 0.1075 1 0.086929 1 0.0138 1 0.25125 1 del_xq21.33 80 (15%) 442 9.9999e-06 0.0077 9.9999e-06 0.0077 0.34301 1 0.12803 1 0.00179 0.931 0.02202 1 0.00017 0.0976 0.01319 1 0.04182 1 0.17378 1