name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-BA-4074-01A-01D-1434-08	195	172	23	132	1.179487e-01	1	exome+100bp flanks	34834024	40	130	1.148303e-06	3.731983e-06
TCGA-BA-4075-01A-01D-1434-08	226	204	22	150	9.734513e-02	1	exome+100bp flanks	34834024	54	148	1.550208e-06	4.248720e-06
TCGA-BA-4076-01A-01D-1434-08	428	389	39	301	9.112150e-02	1	exome+100bp flanks	34834024	86	291	2.468851e-06	8.353901e-06
TCGA-BA-4077-01B-01D-1434-08	403	377	26	280	6.451613e-02	1	exome+100bp flanks	34834024	93	279	2.669804e-06	8.009411e-06
TCGA-BA-4078-01A-01D-1434-08	557	506	51	383	9.156194e-02	1	exome+100bp flanks	34834024	123	375	3.531030e-06	1.076534e-05
TCGA-BA-5149-01A-01D-1512-08	151	143	8	119	5.298013e-02	1	exome+100bp flanks	34834024	24	118	6.889816e-07	3.387493e-06
TCGA-BA-5151-01A-01D-1434-08	119	103	16	74	1.344538e-01	1	exome+100bp flanks	34834024	28	74	8.038118e-07	2.124360e-06
TCGA-BA-5152-01A-02D-1870-08	618	604	14	443	2.265372e-02	0	coding only	34834024	160	440	4.593210e-06	1.263133e-05
TCGA-BA-5153-01A-01D-1434-08	69	55	14	44	2.028986e-01	1	exome+100bp flanks	34834024	11	43	3.157832e-07	1.234425e-06
TCGA-BA-5555-01A-01D-1512-08	168	157	11	127	6.547619e-02	1	exome+100bp flanks	34834024	30	124	8.612269e-07	3.559738e-06
TCGA-BA-5556-01A-01D-1512-08	185	167	18	131	9.729730e-02	1	exome+100bp flanks	34834024	35	128	1.004765e-06	3.674568e-06
TCGA-BA-5557-01A-01D-1512-08	122	57	65	40	5.327869e-01	2	all capture (no interval list)	65505363	17	40	2.595207e-07	6.106370e-07
TCGA-BA-5558-01A-01D-1512-08	202	187	15	125	7.425743e-02	1	exome+100bp flanks	34834024	62	123	1.779869e-06	3.531030e-06
TCGA-BA-5559-01A-01D-1512-08	105	93	12	68	1.142857e-01	1	exome+100bp flanks	34834024	24	68	6.889816e-07	1.952114e-06
TCGA-BA-6868-01B-12D-1912-08	196	186	10	137	5.102041e-02	1	exome+100bp flanks	34834024	48	135	1.377963e-06	3.875521e-06
TCGA-BA-6869-01A-11D-1870-08	575	548	27	416	4.695652e-02	1	exome+100bp flanks	34834024	130	405	3.731983e-06	1.162656e-05
TCGA-BA-6870-01A-11D-1870-08	117	110	7	81	5.982906e-02	1	exome+100bp flanks	34834024	29	81	8.325194e-07	2.325313e-06
TCGA-BA-6871-01A-11D-1870-08	173	162	11	126	6.358382e-02	1	exome+100bp flanks	34834024	35	126	1.004765e-06	3.617153e-06
TCGA-BA-6872-01A-11D-1870-08	210	194	16	162	7.619048e-02	1	exome+100bp flanks	34834024	32	160	9.186421e-07	4.593210e-06
TCGA-BA-6873-01A-11D-1870-08	86	80	6	61	6.976744e-02	1	exome+100bp flanks	34834024	19	60	5.454437e-07	1.722454e-06
TCGA-BA-7269-01A-11D-2012-08	118	110	8	82	6.779661e-02	1	exome+100bp flanks	34834024	28	81	8.038118e-07	2.325313e-06
TCGA-BB-4217-01A-11D-2078-08	38	34	4	24	1.052632e-01	1	exome+100bp flanks	34834024	10	23	2.870756e-07	6.602740e-07
TCGA-BB-4223-01A-01D-1434-08	358	344	14	256	3.910615e-02	1	exome+100bp flanks	34834024	88	256	2.526266e-06	7.349137e-06
TCGA-BB-4224-01A-01D-1434-08	117	95	22	77	1.880342e-01	1	exome+100bp flanks	34834024	17	75	4.880286e-07	2.153067e-06
TCGA-BB-4225-01A-01D-1434-08	110	93	17	61	1.545455e-01	1	exome+100bp flanks	34834024	32	61	9.186421e-07	1.751161e-06
TCGA-BB-4227-01A-01D-1870-08	319	310	9	214	2.821317e-02	0	coding only	34834024	96	211	2.755926e-06	6.057296e-06
TCGA-BB-4228-01A-01D-1434-08	69	48	21	38	3.043478e-01	1	exome+100bp flanks	34834024	10	38	2.870756e-07	1.090887e-06
TCGA-BB-7861-01A-11D-2229-08	51	32	19	25	3.725490e-01	1	exome+100bp flanks	34834024	7	23	2.009530e-07	6.602740e-07
TCGA-BB-7862-01A-21D-2229-08	480	449	31	328	6.458333e-02	1	exome+100bp flanks	34834024	118	322	3.387493e-06	9.243836e-06
TCGA-BB-7863-01A-11D-2229-08	81	74	7	45	8.641975e-02	1	exome+100bp flanks	34834024	29	43	8.325194e-07	1.234425e-06
TCGA-BB-7864-01A-11D-2229-08	125	97	28	71	2.240000e-01	1	exome+100bp flanks	34834024	24	71	6.889816e-07	2.038237e-06
TCGA-BB-7866-01A-11D-2229-08	80	70	10	56	1.250000e-01	1	exome+100bp flanks	34834024	13	54	3.731983e-07	1.550208e-06
TCGA-BB-7870-01A-11D-2229-08	83	77	6	56	7.228916e-02	1	exome+100bp flanks	34834024	21	53	6.028589e-07	1.521501e-06
TCGA-BB-7871-01A-11D-2229-08	456	436	20	354	4.385965e-02	1	exome+100bp flanks	34834024	81	351	2.325313e-06	1.007636e-05
TCGA-BB-7872-01A-11D-2229-08	89	76	13	60	1.460674e-01	1	exome+100bp flanks	34834024	16	59	4.593210e-07	1.693746e-06
TCGA-CN-4723-01A-01D-1434-08	1082	1051	31	773	2.865065e-02	0	coding only	34834024	274	765	7.865873e-06	2.196129e-05
TCGA-CN-4725-01A-01D-1434-08	88	73	15	53	1.704545e-01	1	exome+100bp flanks	34834024	20	50	5.741513e-07	1.435378e-06
TCGA-CN-4726-01A-01D-1434-08	118	97	21	70	1.779661e-01	1	exome+100bp flanks	34834024	27	68	7.751042e-07	1.952114e-06
TCGA-CN-4727-01A-01D-1434-08	524	484	40	375	7.633588e-02	1	exome+100bp flanks	34834024	109	367	3.129125e-06	1.053568e-05
TCGA-CN-4728-01A-01D-1434-08	192	166	26	124	1.354167e-01	1	exome+100bp flanks	34834024	42	120	1.205718e-06	3.444908e-06
TCGA-CN-4729-01A-01D-1434-08	201	175	26	125	1.293532e-01	1	exome+100bp flanks	34834024	50	123	1.435378e-06	3.531030e-06
TCGA-CN-4730-01A-01D-1434-08	211	196	15	154	7.109005e-02	1	exome+100bp flanks	34834024	42	154	1.205718e-06	4.420965e-06
TCGA-CN-4731-01A-01D-1434-08	162	139	23	95	1.419753e-01	1	exome+100bp flanks	34834024	44	95	1.263133e-06	2.727219e-06
TCGA-CN-4733-01A-02D-1870-08	50	47	3	34	6.000000e-02	1	exome+100bp flanks	34834024	13	33	3.731983e-07	9.473496e-07
TCGA-CN-4734-01A-01D-1434-08	205	189	16	133	7.804878e-02	1	exome+100bp flanks	34834024	56	133	1.607624e-06	3.818106e-06
TCGA-CN-4735-01A-01D-1434-08	197	176	21	130	1.065990e-01	1	exome+100bp flanks	34834024	44	127	1.263133e-06	3.645861e-06
TCGA-CN-4736-01A-01D-1434-08	114	104	10	86	8.771930e-02	1	exome+100bp flanks	34834024	18	85	5.167362e-07	2.440143e-06
TCGA-CN-4737-01A-01D-1434-08	78	59	19	42	2.435897e-01	1	exome+100bp flanks	34834024	17	40	4.880286e-07	1.148303e-06
TCGA-CN-4738-01A-02D-1512-08	140	131	9	95	6.428571e-02	1	exome+100bp flanks	34834024	35	94	1.004765e-06	2.698511e-06
TCGA-CN-4739-01A-02D-1512-08	265	248	17	190	6.415094e-02	1	exome+100bp flanks	34834024	57	185	1.636331e-06	5.310899e-06
TCGA-CN-4740-01A-01D-1434-08	210	177	33	134	1.571429e-01	1	exome+100bp flanks	34834024	43	132	1.234425e-06	3.789399e-06
TCGA-CN-4741-01A-01D-1434-08	220	205	15	151	6.818182e-02	1	exome+100bp flanks	34834024	52	148	1.492793e-06	4.248720e-06
TCGA-CN-4742-01A-02D-1512-08	115	96	19	74	1.652174e-01	1	exome+100bp flanks	34834024	22	74	6.315664e-07	2.124360e-06
TCGA-CN-5355-01A-01D-1434-08	140	124	16	97	1.142857e-01	1	exome+100bp flanks	34834024	27	96	7.751042e-07	2.755926e-06
TCGA-CN-5356-01A-01D-1434-08	450	417	33	317	7.333333e-02	1	exome+100bp flanks	34834024	98	310	2.813341e-06	8.899345e-06
TCGA-CN-5358-01A-01D-1512-08	70	64	6	52	8.571429e-02	1	exome+100bp flanks	34834024	12	49	3.444908e-07	1.406671e-06
TCGA-CN-5359-01A-01D-1434-08	190	178	12	136	6.315789e-02	1	exome+100bp flanks	34834024	42	131	1.205718e-06	3.760691e-06
TCGA-CN-5360-01A-01D-1434-08	616	577	39	445	6.331169e-02	1	exome+100bp flanks	34834024	131	436	3.760691e-06	1.251650e-05
TCGA-CN-5361-01A-01D-1434-08	152	135	17	89	1.118421e-01	1	exome+100bp flanks	34834024	46	89	1.320548e-06	2.554973e-06
TCGA-CN-5363-01A-01D-1434-08	253	230	23	165	9.090909e-02	1	exome+100bp flanks	34834024	64	163	1.837284e-06	4.679333e-06
TCGA-CN-5364-01A-01D-1434-08	170	157	13	132	7.647059e-02	1	exome+100bp flanks	34834024	24	131	6.889816e-07	3.760691e-06
TCGA-CN-5365-01A-01D-1434-08	123	101	22	77	1.788618e-01	1	exome+100bp flanks	34834024	22	76	6.315664e-07	2.181775e-06
TCGA-CN-5366-01A-01D-1434-08	137	121	16	94	1.167883e-01	1	exome+100bp flanks	34834024	27	93	7.751042e-07	2.669804e-06
TCGA-CN-5367-01A-01D-1434-08	141	127	14	97	9.929078e-02	1	exome+100bp flanks	34834024	28	96	8.038118e-07	2.755926e-06
TCGA-CN-5369-01A-01D-1434-08	663	625	38	496	5.731523e-02	1	exome+100bp flanks	34834024	127	492	3.645861e-06	1.412412e-05
TCGA-CN-5370-01A-01D-2012-08	127	120	7	95	5.511811e-02	1	exome+100bp flanks	34834024	25	94	7.176891e-07	2.698511e-06
TCGA-CN-5373-01A-01D-1434-08	199	181	18	132	9.045226e-02	1	exome+100bp flanks	34834024	47	131	1.349256e-06	3.760691e-06
TCGA-CN-5374-01A-01D-1434-08	237	210	27	149	1.139241e-01	1	exome+100bp flanks	34834024	60	148	1.722454e-06	4.248720e-06
TCGA-CN-6010-01A-11D-1683-08	197	188	9	142	4.568528e-02	1	exome+100bp flanks	34834024	46	142	1.320548e-06	4.076474e-06
TCGA-CN-6011-01A-11D-1683-08	425	410	15	307	3.529412e-02	1	exome+100bp flanks	34834024	100	301	2.870756e-06	8.640977e-06
TCGA-CN-6012-01A-11D-1683-08	144	138	6	111	4.166667e-02	1	exome+100bp flanks	34834024	26	111	7.463967e-07	3.186540e-06
TCGA-CN-6013-01A-11D-1683-08	228	221	7	166	3.070175e-02	1	exome+100bp flanks	34834024	53	163	1.521501e-06	4.679333e-06
TCGA-CN-6016-01A-11D-1683-08	147	142	5	106	3.401361e-02	1	exome+100bp flanks	34834024	36	104	1.033472e-06	2.985587e-06
TCGA-CN-6017-01A-11D-1683-08	9	8	1	6	1.111111e-01	1	exome+100bp flanks	34834024	2	6	5.741513e-08	1.722454e-07
TCGA-CN-6018-01A-11D-1683-08	133	127	6	89	4.511278e-02	1	exome+100bp flanks	34834024	38	88	1.090887e-06	2.526266e-06
TCGA-CN-6019-01A-11D-1683-08	153	150	3	122	1.960784e-02	0	coding only	34834024	28	121	8.038118e-07	3.473615e-06
TCGA-CN-6020-01A-11D-1683-08	191	183	8	127	4.188482e-02	1	exome+100bp flanks	34834024	54	126	1.550208e-06	3.617153e-06
TCGA-CN-6021-01A-11D-1683-08	348	327	21	255	6.034483e-02	1	exome+100bp flanks	34834024	70	248	2.009530e-06	7.119476e-06
TCGA-CN-6022-01A-21D-1683-08	94	92	2	62	2.127660e-02	1	exome+100bp flanks	34834024	30	61	8.612269e-07	1.751161e-06
TCGA-CN-6023-01A-11D-1683-08	132	124	8	105	6.060606e-02	1	exome+100bp flanks	34834024	19	102	5.454437e-07	2.928172e-06
TCGA-CN-6024-01A-11D-1683-08	212	204	8	126	3.773585e-02	1	exome+100bp flanks	34834024	77	126	2.210482e-06	3.617153e-06
TCGA-CN-6988-01A-11D-1912-08	187	178	9	136	4.812834e-02	1	exome+100bp flanks	34834024	42	133	1.205718e-06	3.818106e-06
TCGA-CN-6989-01A-11D-1912-08	124	123	1	92	8.064516e-03	0	coding only	34834024	29	92	8.325194e-07	2.641096e-06
TCGA-CN-6992-01A-11D-1912-08	423	394	29	296	6.855792e-02	1	exome+100bp flanks	34834024	97	290	2.784634e-06	8.325194e-06
TCGA-CN-6994-01A-11D-1912-08	155	140	15	103	9.677419e-02	1	exome+100bp flanks	34834024	36	100	1.033472e-06	2.870756e-06
TCGA-CN-6995-01A-31D-2012-08	275	260	15	207	5.454545e-02	1	exome+100bp flanks	34834024	52	204	1.492793e-06	5.856343e-06
TCGA-CN-6996-01A-11D-1912-08	71	66	5	50	7.042254e-02	1	exome+100bp flanks	34834024	16	49	4.593210e-07	1.406671e-06
TCGA-CN-6997-01A-11D-2012-08	172	161	11	130	6.395349e-02	1	exome+100bp flanks	34834024	31	128	8.899345e-07	3.674568e-06
TCGA-CN-6998-01A-23D-2012-08	107	101	6	67	5.607477e-02	1	exome+100bp flanks	34834024	34	66	9.760572e-07	1.894699e-06
TCGA-CQ-5323-01A-01D-1683-08	87	82	5	62	5.747126e-02	1	exome+100bp flanks	34834024	20	61	5.741513e-07	1.751161e-06
TCGA-CQ-5324-01A-01D-1683-08	83	81	2	65	2.409639e-02	1	exome+100bp flanks	34834024	16	65	4.593210e-07	1.865992e-06
TCGA-CQ-5325-01A-01D-1683-08	67	62	5	50	7.462687e-02	1	exome+100bp flanks	34834024	12	50	3.444908e-07	1.435378e-06
TCGA-CQ-5326-01A-01D-1870-08	270	263	7	184	2.592593e-02	0	coding only	34834024	77	182	2.210482e-06	5.224777e-06
TCGA-CQ-5327-01A-01D-1683-08	283	271	12	205	4.240283e-02	1	exome+100bp flanks	34834024	65	203	1.865992e-06	5.827636e-06
TCGA-CQ-5329-01A-01D-1683-08	39	36	3	29	7.692308e-02	1	exome+100bp flanks	34834024	7	29	2.009530e-07	8.325194e-07
TCGA-CQ-5330-01A-01D-1683-08	81	78	3	59	3.703704e-02	1	exome+100bp flanks	34834024	19	59	5.454437e-07	1.693746e-06
TCGA-CQ-5331-01A-02D-1870-08	179	172	7	137	3.910615e-02	1	exome+100bp flanks	34834024	35	134	1.004765e-06	3.846814e-06
TCGA-CQ-5332-01A-01D-1683-08	168	163	5	124	2.976190e-02	0	coding only	34834024	39	122	1.119595e-06	3.502323e-06
TCGA-CQ-5334-01A-01D-1683-08	223	213	10	162	4.484305e-02	1	exome+100bp flanks	34834024	51	162	1.464086e-06	4.650625e-06
TCGA-CQ-6218-01A-11D-1912-08	175	165	10	112	5.714286e-02	1	exome+100bp flanks	34834024	52	107	1.492793e-06	3.071709e-06
TCGA-CQ-6219-01A-11D-1912-08	100	91	9	66	9.000000e-02	1	exome+100bp flanks	34834024	24	66	6.889816e-07	1.894699e-06
TCGA-CQ-6220-01A-11D-1912-08	141	134	7	100	4.964539e-02	1	exome+100bp flanks	34834024	34	100	9.760572e-07	2.870756e-06
TCGA-CQ-6221-01A-11D-2078-08	143	137	6	109	4.195804e-02	1	exome+100bp flanks	34834024	27	108	7.751042e-07	3.100417e-06
TCGA-CQ-6222-01A-11D-1912-08	81	78	3	61	3.703704e-02	1	exome+100bp flanks	34834024	17	59	4.880286e-07	1.693746e-06
TCGA-CQ-6223-01A-11D-1912-08	111	107	4	78	3.603604e-02	1	exome+100bp flanks	34834024	28	78	8.038118e-07	2.239190e-06
TCGA-CQ-6224-01A-11D-1912-08	94	88	6	59	6.382979e-02	1	exome+100bp flanks	34834024	29	56	8.325194e-07	1.607624e-06
TCGA-CQ-6225-01A-11D-1912-08	195	182	13	139	6.666667e-02	1	exome+100bp flanks	34834024	41	135	1.177010e-06	3.875521e-06
TCGA-CQ-6227-01A-11D-1912-08	53	50	3	37	5.660377e-02	1	exome+100bp flanks	34834024	13	37	3.731983e-07	1.062180e-06
TCGA-CQ-6228-01A-11D-1912-08	141	127	14	107	9.929078e-02	1	exome+100bp flanks	34834024	20	104	5.741513e-07	2.985587e-06
TCGA-CQ-6229-01A-11D-1912-08	40	35	5	25	1.250000e-01	1	exome+100bp flanks	34834024	10	25	2.870756e-07	7.176891e-07
TCGA-CQ-7065-01A-11D-2078-08	44	38	6	26	1.363636e-01	1	exome+100bp flanks	34834024	11	26	3.157832e-07	7.463967e-07
TCGA-CQ-7067-01A-11D-2229-08	76	66	10	52	1.315789e-01	1	exome+100bp flanks	34834024	13	49	3.731983e-07	1.406671e-06
TCGA-CQ-7068-01A-11D-2078-08	136	127	9	91	6.617647e-02	1	exome+100bp flanks	34834024	36	89	1.033472e-06	2.554973e-06
TCGA-CR-5243-01A-01D-1512-08	95	88	7	66	7.368421e-02	1	exome+100bp flanks	34834024	21	64	6.028589e-07	1.837284e-06
TCGA-CR-5247-01A-01D-2012-08	97	88	9	69	9.278351e-02	1	exome+100bp flanks	34834024	19	67	5.454437e-07	1.923407e-06
TCGA-CR-5248-01A-01D-2012-08	405	393	12	305	2.962963e-02	0	coding only	34834024	88	298	2.526266e-06	8.554854e-06
TCGA-CR-5249-01A-01D-1512-08	63	53	10	35	1.587302e-01	1	exome+100bp flanks	34834024	18	35	5.167362e-07	1.004765e-06
TCGA-CR-5250-01A-01D-1512-08	54	42	12	34	2.222222e-01	1	exome+100bp flanks	34834024	8	33	2.296605e-07	9.473496e-07
TCGA-CR-6467-01A-11D-1870-08	68	57	11	36	1.617647e-01	1	exome+100bp flanks	34834024	21	36	6.028589e-07	1.033472e-06
TCGA-CR-6470-01A-11D-1870-08	54	49	5	39	9.259259e-02	1	exome+100bp flanks	34834024	10	38	2.870756e-07	1.090887e-06
TCGA-CR-6471-01A-11D-1870-08	167	162	5	118	2.994012e-02	0	coding only	34834024	43	116	1.234425e-06	3.330078e-06
TCGA-CR-6472-01A-11D-1870-08	562	547	15	414	2.669039e-02	0	coding only	34834024	132	410	3.789399e-06	1.177010e-05
TCGA-CR-6473-01A-11D-1870-08	118	110	8	84	6.779661e-02	1	exome+100bp flanks	34834024	26	84	7.463967e-07	2.411435e-06
TCGA-CR-6474-01A-11D-1870-08	138	128	10	98	7.246377e-02	1	exome+100bp flanks	34834024	30	97	8.612269e-07	2.784634e-06
TCGA-CR-6477-01A-11D-1870-08	111	103	8	78	7.207207e-02	1	exome+100bp flanks	34834024	25	77	7.176891e-07	2.210482e-06
TCGA-CR-6478-01A-11D-1870-08	155	147	8	95	5.161290e-02	1	exome+100bp flanks	34834024	51	93	1.464086e-06	2.669804e-06
TCGA-CR-6480-01A-11D-1870-08	142	133	9	97	6.338028e-02	1	exome+100bp flanks	34834024	36	95	1.033472e-06	2.727219e-06
TCGA-CR-6481-01A-11D-1870-08	577	560	17	430	2.946274e-02	0	coding only	34834024	130	428	3.731983e-06	1.228684e-05
TCGA-CR-6482-01A-11D-1870-08	59	57	2	40	3.389831e-02	1	exome+100bp flanks	34834024	17	40	4.880286e-07	1.148303e-06
TCGA-CR-6484-01A-11D-1870-08	330	324	6	239	1.818182e-02	0	coding only	34834024	82	238	2.354020e-06	6.832400e-06
TCGA-CR-6487-01A-11D-1870-08	166	152	14	123	8.433735e-02	1	exome+100bp flanks	34834024	28	119	8.038118e-07	3.416200e-06
TCGA-CR-6488-01A-12D-2078-08	49	45	4	34	8.163265e-02	1	exome+100bp flanks	34834024	11	33	3.157832e-07	9.473496e-07
TCGA-CR-6491-01A-11D-1870-08	173	166	7	115	4.046243e-02	1	exome+100bp flanks	34834024	51	114	1.464086e-06	3.272662e-06
TCGA-CR-6492-01A-12D-2078-08	84	78	6	58	7.142857e-02	1	exome+100bp flanks	34834024	19	58	5.454437e-07	1.665039e-06
TCGA-CR-6493-01A-11D-1870-08	47	43	4	36	8.510638e-02	1	exome+100bp flanks	34834024	7	35	2.009530e-07	1.004765e-06
TCGA-CR-7364-01A-11D-2012-08	547	520	27	400	4.936015e-02	1	exome+100bp flanks	34834024	119	392	3.416200e-06	1.125337e-05
TCGA-CR-7365-01A-11D-2012-08	201	195	6	149	2.985075e-02	0	coding only	34834024	46	146	1.320548e-06	4.191304e-06
TCGA-CR-7367-01A-11D-2012-08	215	201	14	157	6.511628e-02	1	exome+100bp flanks	34834024	44	156	1.263133e-06	4.478380e-06
TCGA-CR-7368-01A-11D-2129-08	246	242	4	184	1.626016e-02	0	coding only	34834024	56	183	1.607624e-06	5.253484e-06
TCGA-CR-7369-01A-11D-2129-08	95	88	7	69	7.368421e-02	1	exome+100bp flanks	34834024	19	68	5.454437e-07	1.952114e-06
TCGA-CR-7370-01A-11D-2129-08	648	613	35	447	5.401235e-02	1	exome+100bp flanks	34834024	164	442	4.708041e-06	1.268874e-05
TCGA-CR-7371-01A-11D-2012-08	352	341	11	259	3.125000e-02	1	exome+100bp flanks	34834024	82	254	2.354020e-06	7.291721e-06
TCGA-CR-7372-01A-11D-2012-08	62	58	4	46	6.451613e-02	1	exome+100bp flanks	34834024	12	45	3.444908e-07	1.291840e-06
TCGA-CR-7373-01A-11D-2012-08	141	139	2	95	1.418440e-02	0	coding only	34834024	44	95	1.263133e-06	2.727219e-06
TCGA-CR-7374-01A-11D-2012-08	444	422	22	331	4.954955e-02	1	exome+100bp flanks	34834024	91	323	2.612388e-06	9.272543e-06
TCGA-CR-7376-01A-11D-2129-08	76	73	3	58	3.947368e-02	1	exome+100bp flanks	34834024	15	57	4.306135e-07	1.636331e-06
TCGA-CR-7377-01A-11D-2012-08	156	149	7	106	4.487179e-02	1	exome+100bp flanks	34834024	43	105	1.234425e-06	3.014294e-06
TCGA-CR-7379-01A-11D-2012-08	178	173	5	117	2.808989e-02	0	coding only	34834024	55	116	1.578916e-06	3.330078e-06
TCGA-CR-7380-01A-11D-2012-08	118	115	3	91	2.542373e-02	0	coding only	34834024	24	89	6.889816e-07	2.554973e-06
TCGA-CR-7382-01A-11D-2129-08	109	102	7	77	6.422018e-02	1	exome+100bp flanks	34834024	25	76	7.176891e-07	2.181775e-06
TCGA-CR-7383-01A-11D-2129-08	128	121	7	93	5.468750e-02	1	exome+100bp flanks	34834024	27	93	7.751042e-07	2.669804e-06
TCGA-CR-7385-01A-11D-2012-08	62	58	4	44	6.451613e-02	1	exome+100bp flanks	34834024	13	43	3.731983e-07	1.234425e-06
TCGA-CR-7386-01A-11D-2012-08	231	223	8	163	3.463203e-02	1	exome+100bp flanks	34834024	60	158	1.722454e-06	4.535795e-06
TCGA-CR-7388-01A-11D-2012-08	878	848	30	653	3.416856e-02	1	exome+100bp flanks	34834024	192	639	5.511852e-06	1.834413e-05
TCGA-CR-7389-01A-11D-2012-08	140	134	6	95	4.285714e-02	1	exome+100bp flanks	34834024	38	93	1.090887e-06	2.669804e-06
TCGA-CR-7390-01A-11D-2012-08	166	160	6	109	3.614458e-02	1	exome+100bp flanks	34834024	51	108	1.464086e-06	3.100417e-06
TCGA-CR-7391-01A-11D-2012-08	13	13	0	11	0	1	exome+100bp flanks	34834024	2	10	5.741513e-08	2.870756e-07
TCGA-CR-7392-01A-11D-2012-08	40	39	1	32	2.500000e-02	1	exome+100bp flanks	34834024	7	32	2.009530e-07	9.186421e-07
TCGA-CR-7393-01A-11D-2012-08	7	4	3	3	4.285714e-01	1	exome+100bp flanks	34834024	1	3	2.870756e-08	8.612269e-08
TCGA-CR-7394-01A-11D-2012-08	216	212	4	150	1.851852e-02	0	coding only	34834024	61	149	1.751161e-06	4.277427e-06
TCGA-CR-7395-01A-11D-2012-08	209	207	2	143	9.569378e-03	0	coding only	34834024	63	142	1.808577e-06	4.076474e-06
TCGA-CR-7397-01A-11D-2012-08	57	55	2	39	3.508772e-02	1	exome+100bp flanks	34834024	15	39	4.306135e-07	1.119595e-06
TCGA-CR-7398-01A-11D-2012-08	426	398	28	300	6.572770e-02	1	exome+100bp flanks	34834024	96	296	2.755926e-06	8.497439e-06
TCGA-CR-7399-01A-11D-2012-08	340	325	15	257	4.411765e-02	1	exome+100bp flanks	34834024	66	251	1.894699e-06	7.205599e-06
TCGA-CR-7401-01A-11D-2012-08	114	105	9	68	7.894737e-02	1	exome+100bp flanks	34834024	36	68	1.033472e-06	1.952114e-06
TCGA-CR-7402-01A-11D-2012-08	1132	1085	47	844	4.151943e-02	1	exome+100bp flanks	34834024	234	831	6.717570e-06	2.385599e-05
TCGA-CR-7404-01A-11D-2129-08	166	152	14	112	8.433735e-02	1	exome+100bp flanks	34834024	40	111	1.148303e-06	3.186540e-06
TCGA-CV-5430-01A-02D-1683-08	190	177	13	131	6.842105e-02	1	exome+100bp flanks	34834024	46	129	1.320548e-06	3.703276e-06
TCGA-CV-5431-01A-01D-1512-08	124	108	16	77	1.290323e-01	1	exome+100bp flanks	34834024	31	74	8.899345e-07	2.124360e-06
TCGA-CV-5432-01A-02D-1683-08	339	314	25	231	7.374631e-02	1	exome+100bp flanks	34834024	83	226	2.382728e-06	6.487910e-06
TCGA-CV-5434-01A-01D-1683-08	188	173	15	140	7.978723e-02	1	exome+100bp flanks	34834024	31	138	8.899345e-07	3.961644e-06
TCGA-CV-5435-01A-01D-1683-08	144	137	7	101	4.861111e-02	1	exome+100bp flanks	34834024	36	99	1.033472e-06	2.842049e-06
TCGA-CV-5436-01A-01D-1512-08	159	121	38	93	2.389937e-01	1	exome+100bp flanks	34834024	28	91	8.038118e-07	2.612388e-06
TCGA-CV-5439-01A-01D-1683-08	142	129	13	94	9.154930e-02	1	exome+100bp flanks	34834024	35	92	1.004765e-06	2.641096e-06
TCGA-CV-5440-01A-01D-1512-08	138	132	6	100	4.347826e-02	1	exome+100bp flanks	34834024	32	100	9.186421e-07	2.870756e-06
TCGA-CV-5441-01A-01D-1512-08	473	431	42	324	8.879493e-02	1	exome+100bp flanks	34834024	106	317	3.043002e-06	9.100298e-06
TCGA-CV-5442-01A-01D-1512-08	335	307	28	237	8.358209e-02	1	exome+100bp flanks	34834024	70	236	2.009530e-06	6.774985e-06
TCGA-CV-5443-01A-01D-1512-08	138	69	69	46	5.000000e-01	2	all capture (no interval list)	65505363	22	45	3.358504e-07	6.869667e-07
TCGA-CV-5444-01A-02D-1512-08	178	157	21	108	1.179775e-01	1	exome+100bp flanks	34834024	49	108	1.406671e-06	3.100417e-06
TCGA-CV-5966-01A-11D-1683-08	137	127	10	98	7.299270e-02	1	exome+100bp flanks	34834024	29	96	8.325194e-07	2.755926e-06
TCGA-CV-5970-01A-11D-1683-08	243	232	11	172	4.526749e-02	1	exome+100bp flanks	34834024	60	168	1.722454e-06	4.822871e-06
TCGA-CV-5971-01A-11D-1683-08	37	34	3	22	8.108108e-02	1	exome+100bp flanks	34834024	12	20	3.444908e-07	5.741513e-07
TCGA-CV-5973-01A-11D-1683-08	80	75	5	50	6.250000e-02	1	exome+100bp flanks	34834024	25	48	7.176891e-07	1.377963e-06
TCGA-CV-5976-01A-11D-1683-08	97	91	6	66	6.185567e-02	1	exome+100bp flanks	34834024	25	65	7.176891e-07	1.865992e-06
TCGA-CV-5977-01A-11D-1683-08	115	107	8	69	6.956522e-02	1	exome+100bp flanks	34834024	38	69	1.090887e-06	1.980822e-06
TCGA-CV-5978-01A-11D-1683-08	216	202	14	156	6.481481e-02	1	exome+100bp flanks	34834024	43	153	1.234425e-06	4.392257e-06
TCGA-CV-5979-01A-11D-1683-08	46	42	4	35	8.695652e-02	1	exome+100bp flanks	34834024	7	35	2.009530e-07	1.004765e-06
TCGA-CV-6003-01A-11D-1683-08	122	115	7	91	5.737705e-02	1	exome+100bp flanks	34834024	24	90	6.889816e-07	2.583681e-06
TCGA-CV-6433-01A-11D-1683-08	76	72	4	53	5.263158e-02	1	exome+100bp flanks	34834024	19	53	5.454437e-07	1.521501e-06
TCGA-CV-6436-01A-11D-1683-08	94	89	5	68	5.319149e-02	1	exome+100bp flanks	34834024	21	67	6.028589e-07	1.923407e-06
TCGA-CV-6441-01A-11D-1683-08	278	265	13	198	4.676259e-02	1	exome+100bp flanks	34834024	66	191	1.894699e-06	5.483145e-06
TCGA-CV-6933-01A-11D-1912-08	149	139	10	108	6.711409e-02	1	exome+100bp flanks	34834024	31	106	8.899345e-07	3.043002e-06
TCGA-CV-6934-01A-11D-1912-08	114	109	5	86	4.385965e-02	1	exome+100bp flanks	34834024	23	85	6.602740e-07	2.440143e-06
TCGA-CV-6935-01A-11D-1912-08	272	255	17	201	6.250000e-02	1	exome+100bp flanks	34834024	54	196	1.550208e-06	5.626683e-06
TCGA-CV-6936-01A-11D-1912-08	335	321	14	236	4.179104e-02	1	exome+100bp flanks	34834024	85	236	2.440143e-06	6.774985e-06
TCGA-CV-6937-01A-11D-2012-08	162	155	7	116	4.320988e-02	1	exome+100bp flanks	34834024	38	115	1.090887e-06	3.301370e-06
TCGA-CV-6938-01A-11D-1912-08	179	175	4	143	2.234637e-02	0	coding only	34834024	32	142	9.186421e-07	4.076474e-06
TCGA-CV-6939-01A-11D-1912-08	58	55	3	40	5.172414e-02	1	exome+100bp flanks	34834024	14	39	4.019059e-07	1.119595e-06
TCGA-CV-6940-01A-11D-1912-08	165	153	12	114	7.272727e-02	1	exome+100bp flanks	34834024	38	113	1.090887e-06	3.243955e-06
TCGA-CV-6941-01A-11D-1912-08	181	169	12	127	6.629834e-02	1	exome+100bp flanks	34834024	42	124	1.205718e-06	3.559738e-06
TCGA-CV-6942-01A-21D-2012-08	273	263	10	200	3.663004e-02	1	exome+100bp flanks	34834024	63	198	1.808577e-06	5.684098e-06
TCGA-CV-6943-01A-11D-1912-08	77	74	3	56	3.896104e-02	1	exome+100bp flanks	34834024	18	55	5.167362e-07	1.578916e-06
TCGA-CV-6945-01A-11D-1912-08	162	155	7	111	4.320988e-02	1	exome+100bp flanks	34834024	43	111	1.234425e-06	3.186540e-06
TCGA-CV-6948-01A-11D-1912-08	241	237	4	176	1.659751e-02	0	coding only	34834024	60	171	1.722454e-06	4.908994e-06
TCGA-CV-6950-01A-11D-1912-08	80	69	11	53	1.375000e-01	1	exome+100bp flanks	34834024	16	53	4.593210e-07	1.521501e-06
TCGA-CV-6951-01A-11D-1912-08	160	152	8	117	5.000000e-02	1	exome+100bp flanks	34834024	34	117	9.760572e-07	3.358785e-06
TCGA-CV-6952-01A-11D-1912-08	210	194	16	147	7.619048e-02	1	exome+100bp flanks	34834024	46	146	1.320548e-06	4.191304e-06
TCGA-CV-6953-01A-11D-1912-08	129	120	9	95	6.976744e-02	1	exome+100bp flanks	34834024	24	95	6.889816e-07	2.727219e-06
TCGA-CV-6954-01A-11D-1912-08	209	192	17	150	8.133971e-02	1	exome+100bp flanks	34834024	41	144	1.177010e-06	4.133889e-06
TCGA-CV-6955-01A-11D-2012-08	162	155	7	114	4.320988e-02	1	exome+100bp flanks	34834024	41	112	1.177010e-06	3.215247e-06
TCGA-CV-6956-01A-21D-2012-08	249	220	29	158	1.164659e-01	1	exome+100bp flanks	34834024	62	156	1.779869e-06	4.478380e-06
TCGA-CV-6959-01A-11D-1912-08	90	79	11	56	1.222222e-01	1	exome+100bp flanks	34834024	22	53	6.315664e-07	1.521501e-06
TCGA-CV-6960-01A-41D-2012-08	227	205	22	157	9.691630e-02	1	exome+100bp flanks	34834024	48	155	1.377963e-06	4.449673e-06
TCGA-CV-6961-01A-21D-1912-08	699	666	33	494	4.721030e-02	1	exome+100bp flanks	34834024	171	490	4.908994e-06	1.406671e-05
TCGA-CV-6962-01A-11D-1912-08	186	169	17	143	9.139785e-02	1	exome+100bp flanks	34834024	26	142	7.463967e-07	4.076474e-06
TCGA-CV-7089-01A-11D-2012-08	206	196	10	152	4.854369e-02	1	exome+100bp flanks	34834024	44	148	1.263133e-06	4.248720e-06
TCGA-CV-7090-01A-11D-2012-08	62	58	4	42	6.451613e-02	1	exome+100bp flanks	34834024	16	42	4.593210e-07	1.205718e-06
TCGA-CV-7091-01A-11D-2012-08	168	159	9	122	5.357143e-02	1	exome+100bp flanks	34834024	37	119	1.062180e-06	3.416200e-06
TCGA-CV-7095-01A-21D-2012-08	295	283	12	207	4.067797e-02	1	exome+100bp flanks	34834024	73	206	2.095652e-06	5.913758e-06
TCGA-CV-7097-01A-11D-2012-08	125	110	15	79	1.200000e-01	1	exome+100bp flanks	34834024	31	76	8.899345e-07	2.181775e-06
TCGA-CV-7099-01A-41D-2012-08	364	352	12	256	3.296703e-02	1	exome+100bp flanks	34834024	95	252	2.727219e-06	7.234306e-06
TCGA-CV-7100-01A-11D-2012-08	26	22	4	18	1.538462e-01	1	exome+100bp flanks	34834024	4	16	1.148303e-07	4.593210e-07
TCGA-CV-7101-01A-11D-2012-08	246	230	16	180	6.504065e-02	1	exome+100bp flanks	34834024	50	179	1.435378e-06	5.138654e-06
TCGA-CV-7102-01A-11D-2012-08	172	166	6	129	3.488372e-02	1	exome+100bp flanks	34834024	37	129	1.062180e-06	3.703276e-06
TCGA-CV-7103-01A-21D-2012-08	62	55	7	42	1.129032e-01	1	exome+100bp flanks	34834024	13	40	3.731983e-07	1.148303e-06
TCGA-CV-7104-01A-11D-2012-08	132	125	7	99	5.303030e-02	1	exome+100bp flanks	34834024	26	98	7.463967e-07	2.813341e-06
TCGA-CV-7177-01A-11D-2012-08	147	137	10	104	6.802721e-02	1	exome+100bp flanks	34834024	33	101	9.473496e-07	2.899464e-06
TCGA-CV-7178-01A-21D-2012-08	151	139	12	102	7.947020e-02	1	exome+100bp flanks	34834024	36	100	1.033472e-06	2.870756e-06
TCGA-CV-7180-01A-11D-2012-08	79	77	2	58	2.531646e-02	1	exome+100bp flanks	34834024	19	58	5.454437e-07	1.665039e-06
TCGA-CV-7183-01A-11D-2012-08	81	79	2	61	2.469136e-02	1	exome+100bp flanks	34834024	18	59	5.167362e-07	1.693746e-06
TCGA-CV-7235-01A-11D-2012-08	168	159	9	116	5.357143e-02	1	exome+100bp flanks	34834024	43	115	1.234425e-06	3.301370e-06
TCGA-CV-7236-01A-11D-2012-08	70	66	4	44	5.714286e-02	1	exome+100bp flanks	34834024	22	44	6.315664e-07	1.263133e-06
TCGA-CV-7238-01A-11D-2012-08	87	79	8	58	9.195402e-02	1	exome+100bp flanks	34834024	20	57	5.741513e-07	1.636331e-06
TCGA-CV-7242-01A-11D-2012-08	365	341	24	273	6.575342e-02	1	exome+100bp flanks	34834024	67	266	1.923407e-06	7.636212e-06
TCGA-CV-7243-01A-11D-2012-08	97	85	12	65	1.237113e-01	1	exome+100bp flanks	34834024	20	65	5.741513e-07	1.865992e-06
TCGA-CV-7245-01A-11D-2012-08	601	576	25	438	4.159734e-02	1	exome+100bp flanks	34834024	133	425	3.818106e-06	1.220072e-05
TCGA-CV-7247-01A-11D-2012-08	99	84	15	67	1.515152e-01	1	exome+100bp flanks	34834024	17	67	4.880286e-07	1.923407e-06
TCGA-CV-7248-01A-11D-2012-08	360	338	22	256	6.111111e-02	1	exome+100bp flanks	34834024	81	252	2.325313e-06	7.234306e-06
TCGA-CV-7250-01A-11D-2012-08	262	246	16	180	6.106870e-02	1	exome+100bp flanks	34834024	63	179	1.808577e-06	5.138654e-06
TCGA-CV-7252-01A-11D-2012-08	283	271	12	195	4.240283e-02	1	exome+100bp flanks	34834024	76	195	2.181775e-06	5.597975e-06
TCGA-CV-7253-01A-11D-2012-08	232	221	11	175	4.741379e-02	1	exome+100bp flanks	34834024	45	174	1.291840e-06	4.995116e-06
TCGA-CV-7254-01A-11D-2012-08	310	299	11	227	3.548387e-02	1	exome+100bp flanks	34834024	72	223	2.066945e-06	6.401787e-06
TCGA-CV-7255-01A-11D-2012-08	138	132	6	104	4.347826e-02	1	exome+100bp flanks	34834024	28	101	8.038118e-07	2.899464e-06
TCGA-CV-7261-01A-11D-2012-08	153	139	14	106	9.150327e-02	1	exome+100bp flanks	34834024	30	103	8.612269e-07	2.956879e-06
TCGA-CV-7263-01A-11D-2012-08	138	127	11	105	7.971014e-02	1	exome+100bp flanks	34834024	22	104	6.315664e-07	2.985587e-06
TCGA-CV-7406-01A-11D-2078-08	232	226	6	164	2.586207e-02	0	coding only	34834024	62	159	1.779869e-06	4.564503e-06
TCGA-CV-7407-01A-11D-2078-08	156	152	4	109	2.564103e-02	0	coding only	34834024	43	104	1.234425e-06	2.985587e-06
TCGA-CV-7409-01A-31D-2229-08	313	289	24	236	7.667732e-02	1	exome+100bp flanks	34834024	51	233	1.464086e-06	6.688863e-06
TCGA-CV-7410-01A-21D-2078-08	57	50	7	41	1.228070e-01	1	exome+100bp flanks	34834024	9	39	2.583681e-07	1.119595e-06
TCGA-CV-7411-01A-11D-2078-08	140	137	3	104	2.142857e-02	0	coding only	34834024	33	104	9.473496e-07	2.985587e-06
TCGA-CV-7413-01A-11D-2078-08	93	82	11	61	1.182796e-01	1	exome+100bp flanks	34834024	19	60	5.454437e-07	1.722454e-06
TCGA-CV-7414-01A-11D-2078-08	324	317	7	231	2.160494e-02	0	coding only	34834024	84	229	2.411435e-06	6.574032e-06
TCGA-CV-7415-01A-11D-2078-08	101	98	3	69	2.970297e-02	0	coding only	34834024	28	69	8.038118e-07	1.980822e-06
TCGA-CV-7416-01A-11D-2078-08	103	91	12	68	1.165049e-01	1	exome+100bp flanks	34834024	23	67	6.602740e-07	1.923407e-06
TCGA-CV-7418-01A-11D-2078-08	199	189	10	143	5.025126e-02	1	exome+100bp flanks	34834024	45	141	1.291840e-06	4.047767e-06
TCGA-CV-7421-01A-11D-2078-08	87	81	6	51	6.896552e-02	1	exome+100bp flanks	34834024	30	51	8.612269e-07	1.464086e-06
TCGA-CV-7422-01A-21D-2078-08	166	162	4	119	2.409639e-02	0	coding only	34834024	43	117	1.234425e-06	3.358785e-06
TCGA-CV-7423-01A-11D-2078-08	115	107	8	74	6.956522e-02	1	exome+100bp flanks	34834024	33	69	9.473496e-07	1.980822e-06
TCGA-CV-7424-01A-11D-2078-08	226	211	15	155	6.637168e-02	1	exome+100bp flanks	34834024	55	153	1.578916e-06	4.392257e-06
TCGA-CV-7425-01A-11D-2078-08	151	142	9	101	5.960265e-02	1	exome+100bp flanks	34834024	40	96	1.148303e-06	2.755926e-06
TCGA-CV-7427-01A-11D-2078-08	525	515	10	391	1.904762e-02	0	coding only	34834024	123	388	3.531030e-06	1.113854e-05
TCGA-CV-7429-01A-11D-2129-08	68	63	5	47	7.352941e-02	1	exome+100bp flanks	34834024	16	45	4.593210e-07	1.291840e-06
TCGA-CV-7430-01A-11D-2129-08	131	121	10	92	7.633588e-02	1	exome+100bp flanks	34834024	29	90	8.325194e-07	2.583681e-06
TCGA-CV-7432-01A-11D-2129-08	201	186	15	137	7.462687e-02	1	exome+100bp flanks	34834024	48	135	1.377963e-06	3.875521e-06
TCGA-CV-7433-01A-11D-2129-08	136	135	1	99	7.352941e-03	0	coding only	34834024	36	98	1.033472e-06	2.813341e-06
TCGA-CV-7434-01A-11D-2129-08	117	111	6	86	5.128205e-02	1	exome+100bp flanks	34834024	25	82	7.176891e-07	2.354020e-06
TCGA-CV-7435-01A-11D-2129-08	107	97	10	77	9.345794e-02	1	exome+100bp flanks	34834024	20	76	5.741513e-07	2.181775e-06
TCGA-CV-7437-01A-21D-2129-08	174	166	8	124	4.597701e-02	1	exome+100bp flanks	34834024	42	121	1.205718e-06	3.473615e-06
TCGA-CV-7438-01A-21D-2129-08	135	127	8	94	5.925926e-02	1	exome+100bp flanks	34834024	33	92	9.473496e-07	2.641096e-06
TCGA-CV-7440-01A-11D-2129-08	269	247	22	201	8.178439e-02	1	exome+100bp flanks	34834024	45	198	1.291840e-06	5.684098e-06
TCGA-CX-7082-01A-11D-2012-08	122	112	10	85	8.196721e-02	1	exome+100bp flanks	34834024	27	82	7.751042e-07	2.354020e-06
TCGA-CX-7085-01A-21D-2012-08	188	179	9	144	4.787234e-02	1	exome+100bp flanks	34834024	35	143	1.004765e-06	4.105182e-06
TCGA-CX-7086-01A-11D-2078-08	272	260	12	202	4.411765e-02	1	exome+100bp flanks	34834024	58	199	1.665039e-06	5.712805e-06
TCGA-CX-7219-01A-11D-2012-08	153	145	8	111	5.228758e-02	1	exome+100bp flanks	34834024	32	107	9.186421e-07	3.071709e-06
TCGA-D6-6515-01A-21D-1870-08	67	65	2	46	2.985075e-02	1	exome+100bp flanks	34834024	18	46	5.167362e-07	1.320548e-06
TCGA-D6-6516-01A-11D-1870-08	2200	2150	50	1449	2.272727e-02	0	coding only	34834024	690	1424	1.980822e-05	4.087957e-05
TCGA-D6-6517-01A-11D-1870-08	90	82	8	63	8.888889e-02	1	exome+100bp flanks	34834024	18	62	5.167362e-07	1.779869e-06
TCGA-D6-6823-01A-11D-1912-08	122	119	3	100	2.459016e-02	0	coding only	34834024	19	98	5.454437e-07	2.813341e-06
TCGA-D6-6824-01A-11D-1912-08	80	77	3	63	3.750000e-02	1	exome+100bp flanks	34834024	13	61	3.731983e-07	1.751161e-06
TCGA-D6-6825-01A-21D-1912-08	92	85	7	60	7.608696e-02	1	exome+100bp flanks	34834024	25	60	7.176891e-07	1.722454e-06
TCGA-D6-6826-01A-11D-1912-08	127	117	10	88	7.874016e-02	1	exome+100bp flanks	34834024	29	88	8.325194e-07	2.526266e-06
TCGA-D6-6827-01A-11D-1912-08	19	17	2	12	1.052632e-01	1	exome+100bp flanks	34834024	5	12	1.435378e-07	3.444908e-07
TCGA-DQ-5624-01A-01D-1870-08	126	117	9	91	7.142857e-02	1	exome+100bp flanks	34834024	26	91	7.463967e-07	2.612388e-06
TCGA-DQ-5625-01A-01D-1870-08	236	224	12	178	5.084746e-02	1	exome+100bp flanks	34834024	46	175	1.320548e-06	5.023824e-06
TCGA-DQ-5629-01A-01D-1870-08	408	387	21	289	5.147059e-02	1	exome+100bp flanks	34834024	98	282	2.813341e-06	8.095533e-06
TCGA-DQ-5630-01A-01D-1870-08	100	95	5	71	5.000000e-02	1	exome+100bp flanks	34834024	23	70	6.602740e-07	2.009530e-06
TCGA-DQ-5631-01A-01D-1870-08	123	112	11	80	8.943089e-02	1	exome+100bp flanks	34834024	32	78	9.186421e-07	2.239190e-06
TCGA-DQ-7588-01A-11D-2078-08	130	124	6	95	4.615385e-02	1	exome+100bp flanks	34834024	29	93	8.325194e-07	2.669804e-06
TCGA-DQ-7589-01A-11D-2229-08	234	214	20	166	8.547009e-02	1	exome+100bp flanks	34834024	48	165	1.377963e-06	4.736748e-06
TCGA-DQ-7590-01A-11D-2229-08	44	35	9	29	2.045455e-01	1	exome+100bp flanks	34834024	6	27	1.722454e-07	7.751042e-07
TCGA-DQ-7591-01A-11D-2078-08	52	44	8	34	1.538462e-01	1	exome+100bp flanks	34834024	10	34	2.870756e-07	9.760572e-07
TCGA-DQ-7592-01A-11D-2078-08	104	93	11	65	1.057692e-01	1	exome+100bp flanks	34834024	27	64	7.751042e-07	1.837284e-06
TCGA-DQ-7594-01A-11D-2229-08	56	51	5	30	8.928571e-02	1	exome+100bp flanks	34834024	20	29	5.741513e-07	8.325194e-07
TCGA-DQ-7595-01A-11D-2229-08	392	375	17	300	4.336735e-02	1	exome+100bp flanks	34834024	72	294	2.066945e-06	8.440024e-06
TCGA-F7-7848-01A-11D-2129-08	392	374	18	280	4.591837e-02	1	exome+100bp flanks	34834024	92	275	2.641096e-06	7.894580e-06
TCGA-H7-7774-01A-21D-2078-08	179	176	3	137	1.675978e-02	0	coding only	34834024	39	136	1.119595e-06	3.904229e-06
TCGA-HD-7229-01A-11D-2012-08	196	189	7	145	3.571429e-02	1	exome+100bp flanks	34834024	44	143	1.263133e-06	4.105182e-06
TCGA-HD-7753-01A-11D-2078-08	119	108	11	90	9.243697e-02	1	exome+100bp flanks	34834024	18	88	5.167362e-07	2.526266e-06
TCGA-HD-7754-01A-11D-2078-08	80	76	4	53	5.000000e-02	1	exome+100bp flanks	34834024	23	53	6.602740e-07	1.521501e-06
TCGA-HD-7831-01A-11D-2129-08	53	46	7	32	1.320755e-01	1	exome+100bp flanks	34834024	14	32	4.019059e-07	9.186421e-07
TCGA-HD-7832-01A-11D-2129-08	124	119	5	85	4.032258e-02	1	exome+100bp flanks	34834024	34	83	9.760572e-07	2.382728e-06
TCGA-HD-7917-01A-11D-2229-08	84	76	8	59	9.523810e-02	1	exome+100bp flanks	34834024	16	59	4.593210e-07	1.693746e-06
TCGA-HL-7533-01A-11D-2229-08	781	765	16	557	2.048656e-02	0	coding only	34834024	205	554	5.885051e-06	1.590399e-05
TCGA-IQ-7630-01A-11D-2078-08	158	155	3	116	1.898734e-02	0	coding only	34834024	37	113	1.062180e-06	3.243955e-06
TCGA-IQ-7631-01A-11D-2078-08	44	40	4	23	9.090909e-02	1	exome+100bp flanks	34834024	15	23	4.306135e-07	6.602740e-07
TCGA-IQ-7632-01A-11D-2078-08	66	63	3	47	4.545455e-02	1	exome+100bp flanks	34834024	16	44	4.593210e-07	1.263133e-06