Clinical Features	Time to Death		AGE		NEOPLASM.DISEASESTAGE		PATHOLOGY.T.STAGE		PATHOLOGY.N.STAGE		PATHOLOGY.M.STAGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		NUMBERPACKYEARSSMOKED		RACE		ETHNICITY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
3p gain	8 (12%)	58	100	1	0.08366	1	0.01591	1	0.46621	1	0.032692	1	0.25631	1	0.12762	1	NA	NA	NA	NA	0.29569	1	1	1
3q gain	8 (12%)	58	100	1	0.08366	1	0.01576	1	0.46452	1	0.032692	1	0.25418	1	0.12762	1	NA	NA	NA	NA	0.29449	1	1	1
4p gain	24 (36%)	42	100	1	0.26544	1	0.14267	1	0.81113	1	1	1	0.11195	1	1	1	1	1	0.046719	1	1	1	0.28699	1
4q gain	24 (36%)	42	100	1	0.26544	1	0.14135	1	0.80842	1	1	1	0.11256	1	1	1	1	1	0.046719	1	1	1	0.28699	1
5p gain	8 (12%)	58	100	1	0.06607	1	0.00148	0.876	0.36347	1	0.087416	1	0.0079999	1	0.45546	1	NA	NA	NA	NA	1	1	1	1
5q gain	8 (12%)	58	100	1	0.06607	1	0.00146	0.866	0.36342	1	0.087416	1	0.0079999	1	0.45546	1	NA	NA	NA	NA	1	1	1	1
7p gain	24 (36%)	42	100	1	0.17162	1	0.36124	1	0.69063	1	0.6361	1	0.11215	1	0.19497	1	1	1	0.78371	1	1	1	0.30328	1
7q gain	24 (36%)	42	100	1	0.17162	1	0.3618	1	0.69108	1	0.6361	1	0.11176	1	0.19497	1	1	1	0.78371	1	1	1	0.30328	1
8p gain	17 (26%)	49	100	1	0.14235	1	0.38905	1	0.40958	1	1	1	0.66373	1	0.77561	1	1	1	0.39401	1	1	1	0.58768	1
8q gain	18 (27%)	48	100	1	0.14972	1	0.22826	1	0.44782	1	1	1	0.12251	1	0.57661	1	1	1	0.39401	1	1	1	0.58768	1
9p gain	10 (15%)	56	100	1	0.97859	1	0.12402	1	0.19275	1	0.30573	1	1	1	1	1	NA	NA	0.75893	1	0.37631	1	0.53476	1
9q gain	10 (15%)	56	100	1	0.97859	1	0.12195	1	0.19594	1	0.30573	1	1	1	1	1	NA	NA	0.75893	1	0.37612	1	0.53476	1
10p gain	4 (6%)	62	100	1	0.33982	1	0.26668	1	0.45388	1	NA	NA	NA	NA	1	1	NA	NA	NA	NA	1	1	1	1
11p gain	15 (23%)	51	100	1	0.81243	1	0.73884	1	0.81152	1	0.61737	1	0.38544	1	1	1	NA	NA	0.046719	1	0.55921	1	0.07563	1
11q gain	15 (23%)	51	100	1	0.94508	1	0.74166	1	0.80943	1	1	1	0.38428	1	1	1	NA	NA	0.046719	1	0.56091	1	0.07563	1
12p gain	19 (29%)	47	100	1	0.013683	1	0.077149	1	0.31757	1	1	1	0.13593	1	0.41203	1	1	1	0.35723	1	1	1	1	1
12q gain	20 (30%)	46	100	1	0.069554	1	0.11051	1	0.70983	1	0.33007	1	0.13435	1	0.59328	1	1	1	0.23427	1	0.80641	1	1	1
14q gain	21 (32%)	45	100	1	0.14427	1	0.095069	1	0.38177	1	1	1	0.15505	1	0.79421	1	1	1	0.23427	1	1	1	0.60915	1
15q gain	21 (32%)	45	100	1	0.28265	1	0.41173	1	0.48034	1	0.35044	1	0.15238	1	0.79421	1	1	1	1	1	0.81644	1	0.12381	1
16p gain	21 (32%)	45	100	1	0.9945	1	0.47669	1	0.40217	1	0.63533	1	0.7222	1	1	1	1	1	0.046719	1	1	1	0.12381	1
16q gain	21 (32%)	45	100	1	0.9945	1	0.47506	1	0.40236	1	0.63533	1	0.7212	1	1	1	1	1	0.046719	1	1	1	0.12381	1
18p gain	17 (26%)	49	100	1	0.27763	1	0.29404	1	0.43366	1	0.30335	1	0.50823	1	0.77561	1	NA	NA	0.29752	1	1	1	0.57049	1
18q gain	16 (24%)	50	100	1	0.52462	1	0.31133	1	0.20038	1	0.30335	1	0.50753	1	1	1	NA	NA	0.29752	1	1	1	0.30481	1
19p gain	19 (29%)	47	100	1	0.029102	1	0.01584	1	0.51856	1	0.0024579	1	0.083639	1	0.41203	1	NA	NA	0.78371	1	0.25789	1	0.29038	1
19q gain	17 (26%)	49	100	1	0.013712	1	0.29515	1	0.64328	1	0.13589	1	0.061819	1	0.77561	1	NA	NA	1	1	0.59442	1	0.29038	1
20p gain	20 (30%)	46	100	1	0.1281	1	0.36791	1	0.79112	1	0.35044	1	0.70791	1	0.59328	1	1	1	0.23427	1	0.36652	1	0.58768	1
20q gain	21 (32%)	45	100	1	0.052958	1	0.13622	1	0.84512	1	0.35044	1	0.7094	1	0.433	1	1	1	0.23427	1	0.36766	1	0.60915	1
21q gain	4 (6%)	62	100	1	0.59075	1	1	1	1	1	NA	NA	NA	NA	1	1	NA	NA	NA	NA	1	1	1	1
22q gain	19 (29%)	47	100	1	0.41522	1	0.48913	1	0.52142	1	0.16558	1	0.35536	1	0.41203	1	NA	NA	0.78371	1	0.79377	1	0.58768	1
xq gain	6 (9%)	60	100	1	0.81473	1	0.37939	1	0.66128	1	1	1	0.19081	1	0.38804	1	NA	NA	NA	NA	0.45816	1	0.38953	1
1p loss	53 (80%)	13	100	1	0.47784	1	0.02815	1	0.04008	1	1	1	0.0065099	1	0.53446	1	0.43793	1	0.60902	1	1	1	1	1
1q loss	52 (79%)	14	100	1	0.45601	1	0.0061599	1	0.01324	1	0.52875	1	0.02124	1	0.36732	1	0.43793	1	NA	NA	1	1	1	1
2p loss	46 (70%)	20	100	1	0.24094	1	0.14515	1	0.11277	1	1	1	0.19519	1	0.28399	1	0.43793	1	NA	NA	1	1	1	1
2q loss	46 (70%)	20	100	1	0.24094	1	0.14318	1	0.11284	1	1	1	0.1927	1	0.28399	1	0.43793	1	NA	NA	1	1	1	1
3p loss	9 (14%)	57	100	1	0.046481	1	0.076199	1	0.02306	1	1	1	0.65794	1	0.46918	1	NA	NA	NA	NA	1	1	0.53476	1
3q loss	8 (12%)	58	100	1	0.10699	1	0.14182	1	0.052879	1	1	1	0.63961	1	0.25608	1	NA	NA	NA	NA	1	1	0.53476	1
5p loss	10 (15%)	56	100	1	0.64177	1	0.13181	1	0.083729	1	1	1	1	1	1	1	NA	NA	0.15543	1	0.15861	1	0.12121	1
5q loss	10 (15%)	56	100	1	0.64177	1	0.1323	1	0.085829	1	1	1	1	1	1	1	NA	NA	0.15543	1	0.16024	1	0.12121	1
6p loss	51 (77%)	15	100	1	0.37871	1	0.081079	1	0.056009	1	0.56754	1	0.16889	1	0.24419	1	0.43793	1	NA	NA	1	1	1	1
6q loss	51 (77%)	15	100	1	0.37871	1	0.083019	1	0.054619	1	0.56754	1	0.17036	1	0.24419	1	0.43793	1	NA	NA	1	1	1	1
8p loss	9 (14%)	57	100	1	0.77915	1	0.74128	1	0.43645	1	1	1	1	1	0.72701	1	NA	NA	NA	NA	0.61351	1	0.56578	1
8q loss	8 (12%)	58	100	1	0.57532	1	0.70258	1	0.41175	1	1	1	1	1	1	1	NA	NA	NA	NA	0.57049	1	1	1
9p loss	10 (15%)	56	100	1	0.011638	1	1	1	1	1	0.52875	1	0.48849	1	0.5083	1	NA	NA	NA	NA	1	1	0.53476	1
9q loss	10 (15%)	56	100	1	0.011638	1	1	1	1	1	0.52875	1	0.48661	1	0.5083	1	NA	NA	NA	NA	1	1	0.53476	1
10p loss	48 (73%)	18	100	1	0.76226	1	0.54716	1	0.39275	1	1	1	0.02002	1	1	1	0.14583	1	0.26049	1	1	1	1	1
10q loss	49 (74%)	17	100	1	0.9532	1	0.3482	1	0.21287	1	1	1	0.0189	1	1	1	0.14583	1	0.26049	1	1	1	1	1
11p loss	7 (11%)	59	100	1	0.052659	1	0.095919	1	0.080229	1	0.46143	1	1	1	0.69108	1	NA	NA	NA	NA	1	1	1	1
11q loss	7 (11%)	59	100	1	0.052659	1	0.094759	1	0.080239	1	0.46143	1	1	1	0.69108	1	NA	NA	NA	NA	1	1	1	1
13q loss	43 (65%)	23	100	1	0.064122	1	0.44825	1	0.35639	1	0.30071	1	0.53605	1	0.2941	1	1	1	0.47395	1	0.81799	1	1	1
16p loss	4 (6%)	62	NA	NA	0.51873	1	0.00037	0.22	0.0066799	1	3.3558e-05	0.02	NA	NA	0.63912	1	NA	NA	NA	NA	1	1	1	1
16q loss	5 (8%)	61	NA	NA	0.2208	1	0.0041	1	0.0493	1	0.00016452	0.0979	NA	NA	0.64106	1	NA	NA	NA	NA	1	1	1	1
17p loss	50 (76%)	16	100	1	0.14856	1	0.073679	1	0.042	1	0.56754	1	0.16954	1	0.15789	1	0.43793	1	NA	NA	1	1	1	1
17q loss	50 (76%)	16	100	1	0.14856	1	0.073599	1	0.04183	1	0.56754	1	0.17176	1	0.15789	1	0.43793	1	NA	NA	1	1	1	1
18p loss	8 (12%)	58	100	1	0.45508	1	0.44552	1	0.89926	1	0.21076	1	0.65831	1	0.25608	1	NA	NA	NA	NA	0.29513	1	1	1
18q loss	10 (15%)	56	100	1	0.34296	1	0.13799	1	0.83359	1	0.25752	1	0.65884	1	0.29506	1	NA	NA	NA	NA	0.37463	1	1	1
19q loss	3 (5%)	63	100	1	0.42325	1	0.01215	1	0.19129	1	0.028894	1	NA	NA	1	1	NA	NA	NA	NA	0.10076	1	0.11111	1
20p loss	4 (6%)	62	100	1	0.23679	1	0.14035	1	0.14211	1	0.30374	1	1	1	1	1	NA	NA	NA	NA	1	1	1	1
20q loss	3 (5%)	63	NA	NA	0.43222	1	0.04047	1	0.02585	1	0.30374	1	1	1	1	1	NA	NA	NA	NA	1	1	NA	NA
21q loss	35 (53%)	31	100	1	0.37509	1	0.90838	1	0.78051	1	0.07309	1	0.076689	1	0.80476	1	0.44794	1	0.70482	1	0.54318	1	0.61294	1
22q loss	8 (12%)	58	100	1	0.78316	1	0.17658	1	1	1	0.21076	1	0.32319	1	0.055318	1	NA	NA	NA	NA	0.5658	1	0.38953	1
xq loss	39 (59%)	27	100	1	0.092322	1	0.30282	1	0.36319	1	1	1	0.14757	1	0.13624	1	0.1322	1	0.16993	1	0.81834	1	1	1