Clinical Features	Time to Death		AGE		NEOPLASM.DISEASESTAGE		PATHOLOGY.T.STAGE		PATHOLOGY.N.STAGE		PATHOLOGY.M.STAGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		NUMBERPACKYEARSSMOKED		RACE		ETHNICITY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	24 (5%)	492	0.17883	1	0.16824	1	0.1737	1	0.28559	1	0.2116	1	0.46366	1	0.83155	1	0.48164	1	NA	NA	0.49505	1	1	1
1q gain	51 (10%)	465	0.577	1	0.030061	1	0.062679	1	0.099789	1	0.4245	1	0.8149	1	0.54001	1	0.763	1	NA	NA	0.9117	1	0.73255	1
2p gain	75 (15%)	441	0.40217	1	0.15389	1	0.12404	1	0.51673	1	0.74315	1	0.44488	1	1	1	0.32912	1	NA	NA	0.28077	1	0.75967	1
2q gain	77 (15%)	439	0.81	1	0.24637	1	0.30138	1	0.64987	1	1	1	0.62895	1	0.44066	1	0.70263	1	NA	NA	0.24847	1	0.37084	1
3p gain	19 (4%)	497	0.66559	1	0.51837	1	0.15318	1	0.21095	1	0.046351	1	0.14975	1	0.33342	1	1	1	NA	NA	1	1	1	1
3q gain	60 (12%)	456	0.83717	1	0.91801	1	0.00103	0.756	9.9999e-05	0.0753	0.0084817	1	0.0057199	1	0.67092	1	0.4766	1	NA	NA	0.53487	1	1	1
4p gain	13 (3%)	503	0.0092136	1	0.77264	1	0.41854	1	0.17978	1	0.49684	1	1	1	0.39397	1	NA	NA	NA	NA	1	1	1	1
4q gain	13 (3%)	503	0.011634	1	0.77264	1	0.55073	1	0.7167	1	0.45623	1	0.82051	1	0.77802	1	NA	NA	NA	NA	1	1	1	1
5p gain	191 (37%)	325	0.2376	1	0.00023549	0.176	0.10781	1	0.19569	1	0.62125	1	1	1	0.017502	1	0.50536	1	NA	NA	0.11877	1	0.8351	1
5q gain	204 (40%)	312	0.15352	1	0.00063614	0.469	0.34566	1	0.35807	1	1	1	1	1	0.019348	1	0.50536	1	NA	NA	0.04597	1	0.83673	1
6p gain	11 (2%)	505	0.42291	1	0.79629	1	0.34422	1	0.23593	1	1	1	0.79627	1	0.34228	1	NA	NA	NA	NA	1	1	1	1
6q gain	9 (2%)	507	0.2995	1	0.3611	1	0.23571	1	0.29197	1	1	1	1	1	0.16654	1	NA	NA	NA	NA	0.62743	1	1	1
7p gain	170 (33%)	346	0.90421	1	0.28325	1	0.077929	1	0.13342	1	0.45042	1	0.051299	1	0.0033668	1	0.39396	1	0.34513	1	0.10397	1	0.51047	1
7q gain	171 (33%)	345	0.43703	1	0.32094	1	0.01946	1	0.065089	1	0.44352	1	0.0077599	1	0.0085394	1	0.17412	1	0.34513	1	0.095519	1	0.26923	1
8p gain	30 (6%)	486	0.57597	1	0.16189	1	0.0018	1	0.00183	1	1	1	0.34952	1	0.55974	1	0.49092	1	NA	NA	0.48137	1	0.38129	1
8q gain	61 (12%)	455	0.4003	1	0.04245	1	0.0069499	1	0.01058	1	0.44926	1	0.20089	1	0.11758	1	0.89717	1	NA	NA	0.92339	1	0.4966	1
9p gain	13 (3%)	503	0.3488	1	0.6792	1	0.9471	1	0.053909	1	1	1	0.35299	1	0.01719	1	NA	NA	NA	NA	0.44604	1	0.56266	1
9q gain	12 (2%)	504	0.72783	1	0.34044	1	0.2369	1	0.00252	1	1	1	1	1	0.12982	1	NA	NA	NA	NA	1	1	0.56266	1
10p gain	17 (3%)	499	0.17408	1	0.09616	1	0.35545	1	0.11952	1	0.10667	1	0.86341	1	0.61937	1	0.24446	1	NA	NA	0.53269	1	1	1
10q gain	12 (2%)	504	0.050901	1	0.015227	1	0.84735	1	0.88275	1	0.26069	1	1	1	0.36551	1	0.62615	1	NA	NA	0.67933	1	1	1
11p gain	31 (6%)	485	0.21108	1	0.99553	1	0.03407	1	0.0164	1	1	1	0.20503	1	0.70411	1	0.94319	1	NA	NA	1	1	1	1
11q gain	29 (6%)	487	0.68857	1	0.93752	1	0.19497	1	0.1004	1	1	1	0.59163	1	1	1	NA	NA	NA	NA	1	1	1	1
12p gain	119 (23%)	397	0.29674	1	0.14248	1	0.00056999	0.421	0.00201	1	0.088526	1	0.02369	1	0.44651	1	0.024598	1	NA	NA	0.12654	1	0.22425	1
12q gain	120 (23%)	396	0.32421	1	0.26947	1	0.00043	0.319	0.00135	0.987	0.088526	1	0.02776	1	0.38635	1	0.024598	1	NA	NA	0.11202	1	0.22501	1
13q gain	22 (4%)	494	0.11895	1	0.25323	1	0.14956	1	0.21792	1	1	1	0.4801	1	0.25658	1	NA	NA	NA	NA	0.12916	1	0.097173	1
14q gain	16 (3%)	500	0.58483	1	0.47176	1	0.24383	1	0.0065199	1	1	1	0.44244	1	0.79573	1	NA	NA	NA	NA	1	1	1	1
15q gain	26 (5%)	490	0.68173	1	0.45927	1	0.59378	1	0.42489	1	0.2116	1	0.61925	1	0.67724	1	0.030376	1	NA	NA	0.81364	1	1	1
16p gain	105 (20%)	411	0.95279	1	0.21553	1	0.17844	1	0.094369	1	0.13359	1	0.52569	1	0.7331	1	0.83517	1	NA	NA	0.25252	1	1	1
16q gain	97 (19%)	419	0.65142	1	0.29949	1	0.18671	1	0.064039	1	0.21098	1	0.76623	1	1	1	0.98764	1	NA	NA	0.428	1	0.78637	1
17p gain	25 (5%)	491	0.96607	1	0.39855	1	0.085189	1	0.83624	1	0.2116	1	0.03868	1	0.83149	1	0.15932	1	NA	NA	0.04054	1	0.6109	1
17q gain	32 (6%)	484	0.78949	1	0.23783	1	0.50895	1	0.6903	1	0.32465	1	0.31214	1	0.85128	1	0.46063	1	NA	NA	0.057979	1	0.62856	1
18p gain	25 (5%)	491	0.23496	1	0.811	1	0.68637	1	0.8726	1	1	1	0.48249	1	0.13304	1	NA	NA	NA	NA	0.80919	1	0.34655	1
18q gain	25 (5%)	491	0.24877	1	0.62366	1	0.51344	1	0.7705	1	0.60218	1	0.48252	1	0.13304	1	NA	NA	NA	NA	0.8106	1	0.34655	1
19p gain	51 (10%)	465	0.62381	1	0.6814	1	0.0068699	1	0.01729	1	0.4035	1	0.0085199	1	0.21923	1	0.3686	1	NA	NA	0.13479	1	0.73255	1
19q gain	57 (11%)	459	0.71346	1	0.39573	1	0.00162	1	0.0066799	1	0.43647	1	0.00312	1	0.24162	1	0.3686	1	NA	NA	0.1073	1	1	1
20p gain	110 (21%)	406	0.25633	1	0.26383	1	3e-05	0.0227	9.9999e-06	0.00766	0.54551	1	0.0068599	1	0.00048026	0.355	0.97283	1	NA	NA	0.37771	1	0.44162	1
20q gain	113 (22%)	403	0.11978	1	0.091119	1	3e-05	0.0227	2e-05	0.0152	0.23597	1	0.0096399	1	0.0026518	1	0.97283	1	NA	NA	0.36328	1	0.31818	1
21q gain	49 (9%)	467	0.59545	1	0.095867	1	0.21734	1	0.10415	1	1	1	0.72379	1	0.43844	1	0.76486	1	NA	NA	0.17939	1	0.71887	1
22q gain	40 (8%)	476	0.45615	1	0.56608	1	0.74921	1	0.098589	1	1	1	0.52681	1	0.30406	1	0.30374	1	NA	NA	0.33231	1	1	1
xq gain	30 (6%)	486	0.26483	1	0.7969	1	0.10644	1	0.18213	1	1	1	0.03367	1	0.69645	1	1	1	NA	NA	0.48956	1	0.62856	1
1p loss	55 (11%)	461	0.072793	1	0.0944	1	0.59251	1	0.01768	1	0.70214	1	0.22122	1	0.18152	1	0.76486	1	NA	NA	0.50153	1	0.2032	1
1q loss	36 (7%)	480	0.66573	1	0.66141	1	0.81271	1	0.077829	1	1	1	0.30688	1	0.59006	1	0.94319	1	NA	NA	0.5524	1	0.46221	1
2p loss	14 (3%)	502	0.0065369	1	0.83408	1	0.45503	1	0.13114	1	1	1	0.82779	1	0.77895	1	NA	NA	NA	NA	0.03973	1	1	1
2q loss	14 (3%)	502	0.10167	1	0.80999	1	0.5621	1	0.22927	1	1	1	0.83067	1	0.77895	1	NA	NA	NA	NA	0.098189	1	1	1
3p loss	371 (72%)	145	0.89429	1	0.68278	1	0.02427	1	0.03202	1	0.79181	1	0.25428	1	0.010799	1	0.42952	1	0.25059	1	0.10819	1	0.65435	1
3q loss	97 (19%)	419	0.10461	1	0.014118	1	0.48056	1	0.23907	1	0.74681	1	0.97104	1	0.00015371	0.115	0.38027	1	NA	NA	0.66375	1	0.78293	1
4p loss	72 (14%)	444	0.55869	1	0.74958	1	0.00036	0.268	0.00022	0.165	0.73082	1	0.0357	1	0.89489	1	0.60947	1	NA	NA	0.15166	1	0.56438	1
4q loss	65 (13%)	451	0.90535	1	0.83603	1	9.9999e-06	0.00766	2e-05	0.0152	0.46274	1	0.00185	1	0.2691	1	0.4766	1	NA	NA	0.053089	1	0.75967	1
5p loss	7 (1%)	509	NA	NA	0.25124	1	0.00167	1	0.00022	0.165	1	1	0.1377	1	0.2588	1	NA	NA	NA	NA	1	1	1	1
5q loss	6 (1%)	510	NA	NA	0.1496	1	0.0058999	1	0.00039	0.289	1	1	0.39551	1	0.67215	1	NA	NA	NA	NA	1	1	1	1
6p loss	100 (19%)	416	0.20743	1	0.27605	1	0.076479	1	0.02831	1	0.0056418	1	0.37105	1	0.0011015	0.807	0.033042	1	0.77924	1	0.16625	1	1	1
6q loss	128 (25%)	388	0.56281	1	0.67884	1	0.4228	1	0.24548	1	0.0013408	0.981	0.8435	1	0.056398	1	0.44381	1	0.059093	1	0.38125	1	0.48475	1
7q loss	3 (1%)	513	NA	NA	0.59655	1	0.12243	1	0.01032	1	0.072289	1	1	1	0.55647	1	NA	NA	NA	NA	1	1	0.13794	1
8p loss	135 (26%)	381	0.38691	1	0.80607	1	0.30813	1	0.1754	1	0.77511	1	0.15187	1	0.028538	1	0.37726	1	0.73137	1	0.18004	1	0.056579	1
8q loss	63 (12%)	453	0.97103	1	0.64769	1	0.53565	1	0.23399	1	0.43647	1	0.74533	1	0.016823	1	0.40984	1	NA	NA	0.21321	1	0.051944	1
9p loss	147 (28%)	369	0.41445	1	0.065584	1	2e-05	0.0152	5e-05	0.0377	0.10293	1	0.00215	1	0.00054007	0.399	0.54553	1	0.79681	1	0.21528	1	0.65441	1
9q loss	148 (29%)	368	0.85961	1	0.04645	1	9.9999e-06	0.00766	2e-05	0.0152	0.17217	1	0.0058499	1	0.00038811	0.288	0.31675	1	0.77924	1	0.18727	1	0.82417	1
10p loss	65 (13%)	451	0.82051	1	0.48118	1	0.051079	1	0.0064199	1	0.14054	1	0.1963	1	0.2691	1	0.04083	1	NA	NA	0.46248	1	0.2032	1
10q loss	87 (17%)	429	0.85141	1	0.67584	1	0.080729	1	0.00167	1	0.32221	1	0.096079	1	0.086154	1	0.23088	1	NA	NA	0.19635	1	0.27648	1
11p loss	18 (3%)	498	0.46033	1	0.054134	1	0.38626	1	0.43506	1	0.15721	1	0.56618	1	1	1	0.62615	1	NA	NA	1	1	0.61099	1
11q loss	23 (4%)	493	0.11859	1	0.005924	1	0.65968	1	0.56588	1	0.23961	1	0.5071	1	0.37847	1	0.24446	1	NA	NA	0.79731	1	1	1
12p loss	3 (1%)	513	0.6753	1	0.81232	1	0.48132	1	0.74107	1	1	1	1	1	1	1	NA	NA	NA	NA	1	1	1	1
12q loss	4 (1%)	512	0.6753	1	0.31465	1	0.16651	1	0.41669	1	1	1	1	1	1	1	NA	NA	NA	NA	1	1	1	1
13q loss	70 (14%)	446	0.0063739	1	0.94246	1	0.00013	0.0978	9.9999e-06	0.00766	0.49155	1	0.055899	1	0.28584	1	0.94927	1	NA	NA	0.27381	1	0.22808	1
14q loss	213 (41%)	303	0.085069	1	0.25412	1	4e-05	0.0302	5.9999e-05	0.0452	0.002335	1	0.00186	1	0.019875	1	0.18376	1	0.25059	1	0.04711	1	0.83759	1
15q loss	35 (7%)	481	0.97532	1	0.99202	1	0.00066999	0.493	0.00023	0.172	1	1	0.02281	1	0.044974	1	0.94319	1	NA	NA	0.077649	1	0.38319	1
16p loss	9 (2%)	507	0.62406	1	0.98377	1	0.24408	1	0.0081299	1	0.36554	1	1	1	1	1	NA	NA	NA	NA	0.62482	1	1	1
16q loss	14 (3%)	502	0.52219	1	0.55936	1	0.16498	1	0.00252	1	0.45623	1	0.55884	1	0.77895	1	NA	NA	NA	NA	0.47871	1	1	1
17p loss	45 (9%)	471	0.028698	1	0.28607	1	0.23848	1	0.20207	1	0.3745	1	0.081389	1	0.19548	1	0.32852	1	NA	NA	1	1	0.71239	1
17q loss	28 (5%)	488	0.66095	1	0.79287	1	0.32797	1	0.29793	1	1	1	0.25838	1	0.23212	1	NA	NA	NA	NA	1	1	1	1
18p loss	92 (18%)	424	0.034097	1	0.12308	1	0.00038	0.283	0.00032	0.239	1	1	0.074699	1	0.15184	1	0.82638	1	NA	NA	0.38296	1	0.098691	1
18q loss	94 (18%)	422	0.0026614	1	0.14864	1	0.0090399	1	0.00444	1	1	1	0.084029	1	0.12236	1	0.85142	1	NA	NA	0.39121	1	0.28137	1
19p loss	11 (2%)	505	NA	NA	0.092555	1	0.02629	1	0.00068999	0.507	1	1	0.60247	1	0.75356	1	NA	NA	NA	NA	0.21325	1	1	1
19q loss	4 (1%)	512	NA	NA	0.84616	1	0.23506	1	0.00312	1	1	1	0.24397	1	1	1	NA	NA	NA	NA	1	1	1	1
20p loss	8 (2%)	508	0.56926	1	0.70065	1	0.75834	1	0.61882	1	1	1	0.53299	1	1	1	NA	NA	NA	NA	0.14396	1	0.25748	1
20q loss	3 (1%)	513	NA	NA	0.11448	1	0.23405	1	0.11063	1	NA	NA	0.46623	1	1	1	NA	NA	NA	NA	1	1	0.071429	1
21q loss	54 (10%)	462	0.67011	1	0.70899	1	0.18303	1	0.00214	1	0.091627	1	0.90972	1	0.54964	1	1	1	NA	NA	0.60672	1	1	1
22q loss	39 (8%)	477	0.013181	1	0.24562	1	0.02437	1	0.18032	1	1	1	0.17264	1	0.86252	1	0.35747	1	NA	NA	0.87733	1	0.011229	1
xq loss	46 (9%)	470	0.11135	1	0.50458	1	0.75172	1	0.18966	1	0.32465	1	0.89596	1	0.078243	1	NA	NA	NA	NA	0.71474	1	0.14872	1