Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q24.1	62 (12%)	466	0.25789	1	0.78477	1	9.9999e-06	0.0036	0.14657	1	0.16518	1	0.13456	1	2e-05	0.00562	0.00489	1	2e-05	0.00562	0.0072499	1	0.58388	1	0.9255	1
amp_1q32.1	62 (12%)	466	0.40749	1	0.9001	1	9.9999e-06	0.0036	0.03949	1	0.067519	1	0.050169	1	9.9999e-06	0.0036	0.00492	1	9.9999e-06	0.0036	0.00070999	0.17	0.27656	1	0.74759	1
amp_3q26.32	87 (16%)	441	0.056599	1	0.11995	1	9.9999e-06	0.0036	4e-05	0.0107	0.00264	0.576	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	0.00094999	0.225	0.0054099	1	0.12753	1
amp_4q32.1	16 (3%)	512	0.18911	1	0.7745	1	0.23606	1	0.70646	1	0.63349	1	0.21925	1	0.01311	1	0.01944	1	0.00175	0.394	0.10232	1	0.23568	1	0.49337	1
amp_5q35.1	332 (63%)	196	0.061839	1	0.050809	1	0.00024	0.0595	0.33175	1	0.03924	1	0.0094199	1	0.00372	0.781	0.084529	1	0.12981	1	0.40457	1	0.62073	1	0.74173	1
amp_7q36.3	176 (33%)	352	0.4531	1	0.85952	1	9.9999e-06	0.0036	0.0058799	1	0.00053999	0.131	0.00334	0.715	4e-05	0.0107	0.00362	0.767	0.0068199	1	0.01466	1	0.14661	1	0.787	1
amp_8q24.22	79 (15%)	449	0.22516	1	0.10474	1	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	3e-05	0.0081	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	0.02455	1
amp_10p14	20 (4%)	508	0.18946	1	0.77391	1	2e-05	0.00562	0.17975	1	0.32968	1	0.20087	1	0.00218	0.482	2e-05	0.00562	0.03201	1	0.03596	1	0.86232	1	0.36892	1
amp_xp22.2	31 (6%)	497	1	1	0.52448	1	0.0080899	1	0.23599	1	0.00107	0.25	0.01533	1	0.057699	1	0.00204	0.453	0.03683	1	0.34782	1	0.94201	1	0.87888	1
amp_xp11.4	33 (6%)	495	0.84133	1	0.79844	1	0.00171	0.386	0.11366	1	0.00069999	0.169	0.00203	0.453	0.02924	1	6.9999e-05	0.0183	0.0484	1	0.24456	1	0.79145	1	1	1
amp_xq11.2	29 (5%)	499	0.1719	1	0.16083	1	0.16464	1	0.25732	1	0.16725	1	0.02776	1	0.17263	1	0.076689	1	0.14123	1	0.42648	1	0.39334	1	0.85476	1
amp_xq28	37 (7%)	491	0.49147	1	0.70264	1	0.16257	1	0.63686	1	0.1837	1	0.10603	1	0.065129	1	0.068559	1	0.10824	1	0.32715	1	0.72993	1	0.48644	1
del_1p36.23	103 (20%)	425	0.00016	0.0405	0.00096999	0.229	9.9999e-06	0.0036	0.081069	1	2e-05	0.00562	3e-05	0.0081	0.00017	0.0427	9.9999e-05	0.0256	9.9999e-06	0.0036	0.0041	0.849	0.02103	1	0.31311	1
del_1p31.1	77 (15%)	451	0.00155	0.355	0.0065899	1	9.9999e-06	0.0036	0.094839	1	0.00024	0.0595	0.00116	0.27	0.01232	1	0.00375	0.784	9.9999e-06	0.0036	0.00296	0.636	0.00494	1	0.6178	1
del_1q43	42 (8%)	486	0.01141	1	0.01114	1	4e-05	0.0107	0.35788	1	0.01903	1	0.063629	1	0.00364	0.768	0.22182	1	0.099319	1	0.01568	1	0.29169	1	0.82275	1
del_2q37.3	50 (9%)	478	0.00157	0.358	0.00047	0.115	0.76514	1	0.62107	1	0.23914	1	0.11281	1	2e-05	0.00562	0.00218	0.482	0.01201	1	0.069199	1	0.25236	1	0.13455	1
del_3p26.3	455 (86%)	73	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	3e-05	0.0081	0.03205	1	9.9999e-06	0.0036	9.9999e-06	0.0036	7.9999e-05	0.0207	2e-05	0.00562	0.00238	0.521	0.01011	1
del_3p22.2	465 (88%)	63	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	0.069809	1	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	0.0063999	1	0.03035	1
del_3p14.1	373 (71%)	155	0.00347	0.739	0.01039	1	9.9999e-06	0.0036	0.0055799	1	0.093089	1	0.055429	1	9.9999e-06	0.0036	0.00026	0.064	0.091629	1	0.0067599	1	0.33452	1	0.882	1
del_3p12.2	305 (58%)	223	0.03983	1	0.063599	1	9.9999e-06	0.0036	0.02015	1	0.35032	1	0.55921	1	0.0013	0.299	0.02322	1	0.25595	1	0.04558	1	0.52356	1	0.73693	1
del_3q11.2	161 (30%)	367	0.18322	1	0.16521	1	9.9999e-06	0.0036	0.04147	1	0.86485	1	0.47065	1	0.50524	1	0.18668	1	0.53817	1	0.063209	1	0.74915	1	0.75747	1
del_4q34.3	78 (15%)	450	0.23852	1	0.4929	1	9.9999e-06	0.0036	2e-05	0.00562	0.04021	1	0.0058199	1	0.00016	0.0405	9.9999e-06	0.0036	0.15017	1	0.0086099	1	0.17954	1	0.01592	1
del_6q26	151 (29%)	377	0.0152	1	0.098589	1	9.9999e-06	0.0036	0.01311	1	4e-05	0.0107	9.9999e-06	0.0036	0.00106	0.249	0.00012	0.0306	2e-05	0.00562	0.00018	0.0448	0.03003	1	0.13253	1
del_6q26	151 (29%)	377	0.0149	1	0.098259	1	9.9999e-06	0.0036	0.01264	1	2e-05	0.00562	9.9999e-06	0.0036	0.00053999	0.131	0.00012	0.0306	9.9999e-06	0.0036	0.00017	0.0427	0.02931	1	0.13257	1
del_8p23.2	154 (29%)	374	0.50294	1	0.24647	1	9.9999e-06	0.0036	0.04128	1	0.0063199	1	0.0111	1	0.00185	0.414	9.9999e-06	0.0036	0.00079999	0.191	0.00087999	0.209	0.1388	1	0.33804	1
del_9p23	152 (29%)	376	0.00397	0.826	0.03571	1	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	2e-05	0.00562	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	0.00275	0.597	0.12378	1
del_9p21.3	159 (30%)	369	0.00129	0.298	0.01656	1	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	0.00127	0.295	0.01214	1
del_10q23.31	96 (18%)	432	0.44165	1	0.5459	1	9.9999e-06	0.0036	0.00161	0.365	0.91456	1	0.0067399	1	0.04668	1	0.00286	0.618	0.01471	1	5e-05	0.0131	0.80039	1	0.43804	1
del_13q14.2	82 (16%)	446	0.01418	1	0.083769	1	9.9999e-06	0.0036	7.9999e-05	0.0207	9.9999e-06	0.0036	8.9999e-05	0.0231	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	0.097109	1	0.14936	1
del_14q31.1	228 (43%)	300	6.9999e-05	0.0183	0.00041	0.1	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	4e-05	0.0107	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	9.9999e-06	0.0036	0.090629	1	0.95164	1