Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_2p23.2	45 (16%)	243	9.9999e-06	0.0031	0.01093	1	0.80387	1	0.050969	1	0.65966	1	0.065539	1	0.152	1	0.062009	1	0.43664	1	0.079039	1
amp_2q32.1	53 (18%)	235	9.9999e-06	0.0031	0.064539	1	0.81143	1	0.083949	1	0.43519	1	0.02902	1	0.30208	1	0.12687	1	0.97541	1	0.5108	1
amp_3q27.1	100 (35%)	188	9.9999e-06	0.0031	0.057579	1	0.25637	1	0.01171	1	9.9999e-06	0.0031	0.00084999	0.184	0.03364	1	0.00019	0.0431	0.7611	1	0.01745	1
amp_5q35.2	37 (13%)	251	9.9999e-06	0.0031	0.00016	0.0365	0.25636	1	0.3215	1	0.00064999	0.142	7.9999e-05	0.0188	0.050989	1	0.0053699	0.967	0.40981	1	0.054759	1
amp_7q31.2	177 (61%)	111	9.9999e-06	0.0031	9.9999e-06	0.0031	0.01345	1	5e-05	0.0121	9.9999e-06	0.0031	9.9999e-06	0.0031	0.050799	1	9.9999e-06	0.0031	3e-05	0.00756	9.9999e-06	0.0031
amp_17q25.2	201 (70%)	87	9.9999e-06	0.0031	3e-05	0.00756	0.080369	1	0.00011	0.0255	9.9999e-06	0.0031	9.9999e-06	0.0031	0.070189	1	0.00103	0.218	0.00161	0.328	0.00105	0.222
amp_19p13.2	31 (11%)	257	9.9999e-06	0.0031	0.0081599	1	0.00467	0.864	0.00448	0.834	0.00089999	0.193	0.00095999	0.204	0.12248	1	0.56432	1	0.061189	1	0.0077999	1
del_1p36.31	55 (19%)	233	9.9999e-06	0.0031	5.9999e-05	0.0144	0.66151	1	0.052079	1	9.9999e-06	0.0031	9.9999e-06	0.0031	0.7707	1	0.85461	1	0.02436	1	0.0055399	0.988
del_2p12	8 (3%)	280	0.084379	1	0.12243	1	0.12895	1	0.10332	1	0.24962	1	0.23781	1	0.17636	1	0.28345	1	0.69411	1	1	1
del_2q22.1	10 (3%)	278	0.0033	0.634	0.0055199	0.988	0.54147	1	0.31257	1	0.00031	0.0691	0.051779	1	0.67073	1	0.80788	1	0.1783	1	0.42625	1
del_2q37.3	12 (4%)	276	0.094739	1	0.00188	0.376	0.0072699	1	0.04785	1	0.0070599	1	0.02143	1	0.14356	1	0.15113	1	0.04555	1	0.23498	1
del_3p22.1	25 (9%)	263	9.9999e-06	0.0031	9.9999e-06	0.0031	0.47172	1	0.00168	0.339	9.9999e-06	0.0031	9.9999e-06	0.0031	0.20232	1	0.0057199	1	0.02564	1	0.00446	0.834
del_4q34.3	32 (11%)	256	9.9999e-06	0.0031	9.9999e-06	0.0031	0.5722	1	0.0059299	1	9.9999e-06	0.0031	5e-05	0.0121	0.42304	1	0.36711	1	0.0089299	1	3e-05	0.00756
del_5p15.33	13 (5%)	275	0.26025	1	0.00233	0.464	0.85447	1	0.01382	1	0.01976	1	0.00352	0.669	0.55885	1	0.20309	1	0.33203	1	0.00159	0.326
del_5q35.2	11 (4%)	277	0.02805	1	4e-05	0.00984	0.41416	1	0.0063199	1	5.9999e-05	0.0144	5.9999e-05	0.0144	0.0071199	1	0.00301	0.581	0.00166	0.337	9.9999e-06	0.0031
del_6p12.3	26 (9%)	262	9.9999e-06	0.0031	0.0090499	1	1	1	0.63065	1	0.00133	0.278	0.00124	0.26	0.13078	1	0.50575	1	0.26372	1	0.21995	1
del_6q22.31	29 (10%)	259	9.9999e-06	0.0031	0.0075499	1	0.95968	1	0.0379	1	2e-05	0.00508	3e-05	0.00756	0.41835	1	0.26558	1	0.01381	1	0.03758	1
del_6q25.3	32 (11%)	256	9.9999e-06	0.0031	0.00044	0.0968	0.85674	1	0.10381	1	9.9999e-06	0.0031	5.9999e-05	0.0144	0.34217	1	0.74251	1	0.04145	1	0.065299	1
del_9p21.3	40 (14%)	248	9.9999e-06	0.0031	9.9999e-06	0.0031	0.36956	1	0.00072999	0.159	9.9999e-06	0.0031	9.9999e-06	0.0031	0.00038	0.0844	0.03023	1	9.9999e-05	0.0233	3e-05	0.00756
del_10q21.1	19 (7%)	269	9.9999e-06	0.0031	4e-05	0.00984	0.33189	1	0.00408	0.767	7.9999e-05	0.0188	0.00077999	0.169	0.63565	1	0.97463	1	0.03738	1	0.0061599	1
del_11q22.3	31 (11%)	257	9.9999e-06	0.0031	0.00144	0.297	0.73779	1	0.23416	1	0.00015	0.0345	2e-04	0.0452	0.23886	1	0.19141	1	0.00281	0.545	0.0024	0.475
del_11q23.3	29 (10%)	259	9.9999e-06	0.0031	0.00015	0.0345	0.41753	1	0.1924	1	5.9999e-05	0.0144	0.00028	0.0627	0.32255	1	0.33348	1	0.0059799	1	0.0051299	0.939
del_14q11.2	51 (18%)	237	9.9999e-06	0.0031	0.01413	1	0.077749	1	0.00398	0.752	9.9999e-06	0.0031	9.9999e-06	0.0031	0.52315	1	0.56123	1	0.02384	1	0.02863	1
del_14q24.2	50 (17%)	238	9.9999e-06	0.0031	0.00134	0.279	0.03843	1	0.00266	0.524	9.9999e-06	0.0031	9.9999e-06	0.0031	0.54005	1	0.57331	1	0.0065699	1	0.0080999	1
del_15q13.3	35 (12%)	253	9.9999e-06	0.0031	4e-05	0.00984	0.13499	1	0.0094699	1	9.9999e-06	0.0031	9.9999e-06	0.0031	0.076559	1	0.60082	1	0.04089	1	0.0033	0.634
del_16q24.1	12 (4%)	276	0.00026	0.0585	4e-05	0.00984	0.30681	1	0.54812	1	0.00088999	0.191	0.0183	1	1	1	0.054049	1	0.01035	1	0.04988	1
del_19p13.3	23 (8%)	265	9.9999e-06	0.0031	0.04486	1	0.77947	1	0.29418	1	0.03763	1	0.0051899	0.945	0.2382	1	0.31282	1	0.087329	1	0.03633	1
del_19q13.42	19 (7%)	269	3e-05	0.00756	0.04535	1	0.88828	1	0.13367	1	0.01005	1	0.00273	0.535	0.39782	1	0.30426	1	0.22886	1	0.34594	1
del_22q12.2	63 (22%)	225	9.9999e-06	0.0031	9.9999e-06	0.0031	0.74167	1	0.0059499	1	9.9999e-06	0.0031	9.9999e-06	0.0031	1	1	0.39955	1	0.03788	1	0.0052499	0.95
del_xp11.4	34 (12%)	254	9.9999e-06	0.0031	9.9999e-06	0.0031	0.37275	1	0.00274	0.535	9.9999e-06	0.0031	2e-05	0.00508	0.70355	1	0.2643	1	0.00138	0.286	4e-04	0.0884
del_xq28	28 (10%)	260	9.9999e-06	0.0031	0.00012	0.0277	0.90321	1	0.077969	1	9.9999e-06	0.0031	0.0017	0.342	0.7503	1	0.79364	1	0.0072499	1	0.0050899	0.937