This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 19 genes and 10 molecular subtypes across 161 patients, 2 significant findings detected with P value < 0.05 and Q value < 0.25.
-
MET mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
-
SETD2 mutation correlated to 'METHLYATION_CNMF'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
MET | 15 (9%) | 146 |
0.198 (1.00) |
0.0895 (1.00) |
0.297 (1.00) |
0.0374 (1.00) |
0.108 (1.00) |
0.00033 (0.0604) |
0.838 (1.00) |
0.815 (1.00) |
0.642 (1.00) |
0.141 (1.00) |
SETD2 | 10 (6%) | 151 |
0.132 (1.00) |
6e-05 (0.011) |
0.193 (1.00) |
0.526 (1.00) |
0.00764 (1.00) |
0.0332 (1.00) |
0.0177 (1.00) |
0.0202 (1.00) |
0.0728 (1.00) |
0.343 (1.00) |
HNRNPM | 10 (6%) | 151 |
0.0749 (1.00) |
0.176 (1.00) |
1 (1.00) |
0.263 (1.00) |
0.507 (1.00) |
0.573 (1.00) |
0.713 (1.00) |
0.317 (1.00) |
0.35 (1.00) |
0.513 (1.00) |
NEFH | 10 (6%) | 151 |
0.432 (1.00) |
0.91 (1.00) |
0.427 (1.00) |
0.346 (1.00) |
0.222 (1.00) |
0.661 (1.00) |
0.0147 (1.00) |
0.03 (1.00) |
0.197 (1.00) |
0.328 (1.00) |
ZNF598 | 10 (6%) | 151 |
0.513 (1.00) |
0.831 (1.00) |
0.512 (1.00) |
0.26 (1.00) |
0.92 (1.00) |
1 (1.00) |
0.394 (1.00) |
0.238 (1.00) |
0.102 (1.00) |
0.119 (1.00) |
NF2 | 10 (6%) | 151 |
0.132 (1.00) |
0.0241 (1.00) |
0.828 (1.00) |
0.577 (1.00) |
0.0963 (1.00) |
0.345 (1.00) |
0.655 (1.00) |
0.55 (1.00) |
0.493 (1.00) |
0.0385 (1.00) |
TDG | 5 (3%) | 156 |
0.101 (1.00) |
0.276 (1.00) |
0.634 (1.00) |
0.369 (1.00) |
0.74 (1.00) |
0.666 (1.00) |
0.439 (1.00) |
0.279 (1.00) |
0.444 (1.00) |
0.91 (1.00) |
SKI | 6 (4%) | 155 |
0.108 (1.00) |
0.0607 (1.00) |
0.738 (1.00) |
0.707 (1.00) |
0.88 (1.00) |
1 (1.00) |
0.511 (1.00) |
0.458 (1.00) |
0.862 (1.00) |
0.373 (1.00) |
MUC5B | 14 (9%) | 147 |
0.116 (1.00) |
0.537 (1.00) |
0.463 (1.00) |
0.413 (1.00) |
0.883 (1.00) |
0.317 (1.00) |
0.885 (1.00) |
0.288 (1.00) |
0.441 (1.00) |
0.965 (1.00) |
ZNF814 | 8 (5%) | 153 |
0.685 (1.00) |
0.43 (1.00) |
1 (1.00) |
0.799 (1.00) |
0.899 (1.00) |
0.603 (1.00) |
0.436 (1.00) |
0.642 (1.00) |
0.193 (1.00) |
0.79 (1.00) |
SMARCB1 | 4 (2%) | 157 |
0.825 (1.00) |
0.216 (1.00) |
1 (1.00) |
0.584 (1.00) |
0.453 (1.00) |
0.413 (1.00) |
0.0352 (1.00) |
0.463 (1.00) |
0.108 (1.00) |
0.33 (1.00) |
KDM6A | 7 (4%) | 154 |
1 (1.00) |
0.555 (1.00) |
0.632 (1.00) |
0.613 (1.00) |
0.0302 (1.00) |
0.735 (1.00) |
0.387 (1.00) |
0.162 (1.00) |
0.396 (1.00) |
0.22 (1.00) |
AHNAK2 | 7 (4%) | 154 |
0.951 (1.00) |
0.764 (1.00) |
0.657 (1.00) |
0.973 (1.00) |
0.794 (1.00) |
0.235 (1.00) |
0.295 (1.00) |
0.213 (1.00) |
0.257 (1.00) |
0.3 (1.00) |
AHCY | 4 (2%) | 157 |
0.0589 (1.00) |
0.473 (1.00) |
0.559 (1.00) |
0.889 (1.00) |
0.261 (1.00) |
0.646 (1.00) |
0.196 (1.00) |
1 (1.00) |
||
IDUA | 5 (3%) | 156 |
0.29 (1.00) |
0.731 (1.00) |
0.3 (1.00) |
0.459 (1.00) |
0.739 (1.00) |
0.267 (1.00) |
0.444 (1.00) |
0.0702 (1.00) |
0.83 (1.00) |
0.868 (1.00) |
OR2L8 | 4 (2%) | 157 |
0.391 (1.00) |
0.294 (1.00) |
0.676 (1.00) |
0.196 (1.00) |
0.375 (1.00) |
0.0398 (1.00) |
0.39 (1.00) |
0.508 (1.00) |
0.549 (1.00) |
0.866 (1.00) |
HOXD8 | 4 (2%) | 157 |
0.181 (1.00) |
0.785 (1.00) |
0.0183 (1.00) |
0.034 (1.00) |
0.375 (1.00) |
0.153 (1.00) |
0.321 (1.00) |
0.834 (1.00) |
0.0173 (1.00) |
0.0106 (1.00) |
PAM | 3 (2%) | 158 |
0.585 (1.00) |
0.787 (1.00) |
0.115 (1.00) |
0.104 (1.00) |
0.189 (1.00) |
1 (1.00) |
0.392 (1.00) |
0.0291 (1.00) |
||
CSGALNACT2 | 5 (3%) | 156 |
0.137 (1.00) |
0.327 (1.00) |
0.831 (1.00) |
0.774 (1.00) |
0.741 (1.00) |
0.618 (1.00) |
0.525 (1.00) |
0.728 (1.00) |
P value = 0.0749 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
HNRNPM MUTATED | 7 | 0 | 2 | 1 |
HNRNPM WILD-TYPE | 54 | 39 | 23 | 35 |
P value = 0.176 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
HNRNPM MUTATED | 5 | 3 | 2 |
HNRNPM WILD-TYPE | 35 | 42 | 61 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
HNRNPM MUTATED | 4 | 4 | 2 |
HNRNPM WILD-TYPE | 44 | 40 | 30 |
P value = 0.263 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
HNRNPM MUTATED | 3 | 1 | 1 | 0 | 1 | 1 | 2 | 1 |
HNRNPM WILD-TYPE | 8 | 11 | 15 | 16 | 16 | 24 | 10 | 14 |
P value = 0.507 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
HNRNPM MUTATED | 1 | 4 | 5 |
HNRNPM WILD-TYPE | 42 | 52 | 57 |
P value = 0.573 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
HNRNPM MUTATED | 5 | 2 | 0 | 3 |
HNRNPM WILD-TYPE | 68 | 37 | 20 | 26 |
P value = 0.713 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
HNRNPM MUTATED | 2 | 3 | 5 |
HNRNPM WILD-TYPE | 45 | 51 | 55 |
P value = 0.317 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
HNRNPM MUTATED | 0 | 4 | 2 | 4 |
HNRNPM WILD-TYPE | 30 | 31 | 37 | 53 |
P value = 0.35 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 39 | 46 |
HNRNPM MUTATED | 3 | 1 | 5 |
HNRNPM WILD-TYPE | 34 | 38 | 41 |
P value = 0.513 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 47 | 47 | 12 | 16 |
HNRNPM MUTATED | 4 | 5 | 0 | 0 |
HNRNPM WILD-TYPE | 43 | 42 | 12 | 16 |
P value = 0.432 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
NEFH MUTATED | 3 | 1 | 2 | 4 |
NEFH WILD-TYPE | 58 | 38 | 23 | 32 |
P value = 0.91 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
NEFH MUTATED | 3 | 2 | 4 |
NEFH WILD-TYPE | 37 | 43 | 59 |
P value = 0.427 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
NEFH MUTATED | 3 | 1 | 3 |
NEFH WILD-TYPE | 45 | 43 | 29 |
P value = 0.346 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
NEFH MUTATED | 0 | 1 | 0 | 1 | 0 | 1 | 2 | 2 |
NEFH WILD-TYPE | 11 | 11 | 16 | 15 | 17 | 24 | 10 | 13 |
P value = 0.222 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
NEFH MUTATED | 5 | 3 | 2 |
NEFH WILD-TYPE | 38 | 53 | 60 |
P value = 0.661 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
NEFH MUTATED | 6 | 3 | 0 | 1 |
NEFH WILD-TYPE | 67 | 36 | 20 | 28 |
P value = 0.0147 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
NEFH MUTATED | 5 | 5 | 0 |
NEFH WILD-TYPE | 42 | 49 | 60 |
P value = 0.03 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
NEFH MUTATED | 3 | 4 | 3 | 0 |
NEFH WILD-TYPE | 27 | 31 | 36 | 57 |
P value = 0.197 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 39 | 46 |
NEFH MUTATED | 2 | 1 | 0 |
NEFH WILD-TYPE | 35 | 38 | 46 |
P value = 0.328 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 47 | 47 | 12 | 16 |
NEFH MUTATED | 3 | 0 | 0 | 0 |
NEFH WILD-TYPE | 44 | 47 | 12 | 16 |
P value = 0.513 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
ZNF598 MUTATED | 4 | 1 | 1 | 4 |
ZNF598 WILD-TYPE | 57 | 38 | 24 | 32 |
P value = 0.831 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
ZNF598 MUTATED | 3 | 3 | 3 |
ZNF598 WILD-TYPE | 37 | 42 | 60 |
P value = 0.512 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
ZNF598 MUTATED | 5 | 3 | 1 |
ZNF598 WILD-TYPE | 43 | 41 | 31 |
P value = 0.26 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
ZNF598 MUTATED | 2 | 1 | 1 | 1 | 3 | 0 | 0 | 1 |
ZNF598 WILD-TYPE | 9 | 11 | 15 | 15 | 14 | 25 | 12 | 14 |
P value = 0.92 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
ZNF598 MUTATED | 2 | 4 | 4 |
ZNF598 WILD-TYPE | 41 | 52 | 58 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
ZNF598 MUTATED | 5 | 2 | 1 | 2 |
ZNF598 WILD-TYPE | 68 | 37 | 19 | 27 |
P value = 0.394 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
ZNF598 MUTATED | 2 | 2 | 6 |
ZNF598 WILD-TYPE | 45 | 52 | 54 |
P value = 0.238 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
ZNF598 MUTATED | 2 | 0 | 2 | 6 |
ZNF598 WILD-TYPE | 28 | 35 | 37 | 51 |
P value = 0.102 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 39 | 46 |
ZNF598 MUTATED | 2 | 1 | 7 |
ZNF598 WILD-TYPE | 35 | 38 | 39 |
P value = 0.119 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 47 | 47 | 12 | 16 |
ZNF598 MUTATED | 1 | 7 | 1 | 1 |
ZNF598 WILD-TYPE | 46 | 40 | 11 | 15 |
P value = 0.132 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
NF2 MUTATED | 4 | 1 | 0 | 5 |
NF2 WILD-TYPE | 57 | 38 | 25 | 31 |
P value = 0.0241 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
NF2 MUTATED | 0 | 6 | 3 |
NF2 WILD-TYPE | 40 | 39 | 60 |
P value = 0.828 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
NF2 MUTATED | 3 | 3 | 3 |
NF2 WILD-TYPE | 45 | 41 | 29 |
P value = 0.577 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
NF2 MUTATED | 0 | 1 | 2 | 0 | 3 | 2 | 0 | 1 |
NF2 WILD-TYPE | 11 | 11 | 14 | 16 | 14 | 23 | 12 | 14 |
P value = 0.0963 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
NF2 MUTATED | 0 | 4 | 6 |
NF2 WILD-TYPE | 43 | 52 | 56 |
P value = 0.345 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
NF2 MUTATED | 3 | 2 | 1 | 4 |
NF2 WILD-TYPE | 70 | 37 | 19 | 25 |
P value = 0.655 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
NF2 MUTATED | 3 | 2 | 5 |
NF2 WILD-TYPE | 44 | 52 | 55 |
P value = 0.55 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
NF2 MUTATED | 1 | 3 | 1 | 5 |
NF2 WILD-TYPE | 29 | 32 | 38 | 52 |
P value = 0.493 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 39 | 46 |
NF2 MUTATED | 2 | 1 | 4 |
NF2 WILD-TYPE | 35 | 38 | 42 |
P value = 0.0385 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 47 | 47 | 12 | 16 |
NF2 MUTATED | 3 | 1 | 3 | 0 |
NF2 WILD-TYPE | 44 | 46 | 9 | 16 |
P value = 0.101 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
TDG MUTATED | 0 | 2 | 2 | 1 |
TDG WILD-TYPE | 61 | 37 | 23 | 35 |
P value = 0.276 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
TDG MUTATED | 0 | 3 | 2 |
TDG WILD-TYPE | 40 | 42 | 61 |
P value = 0.634 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
TDG MUTATED | 1 | 2 | 2 |
TDG WILD-TYPE | 47 | 42 | 30 |
P value = 0.369 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
TDG MUTATED | 0 | 0 | 0 | 2 | 1 | 0 | 1 | 1 |
TDG WILD-TYPE | 11 | 12 | 16 | 14 | 16 | 25 | 11 | 14 |
P value = 0.74 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
TDG MUTATED | 1 | 1 | 3 |
TDG WILD-TYPE | 42 | 55 | 59 |
P value = 0.666 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
TDG MUTATED | 4 | 1 | 0 | 0 |
TDG WILD-TYPE | 69 | 38 | 20 | 29 |
P value = 0.439 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
TDG MUTATED | 3 | 1 | 1 |
TDG WILD-TYPE | 44 | 53 | 59 |
P value = 0.279 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
TDG MUTATED | 2 | 2 | 0 | 1 |
TDG WILD-TYPE | 28 | 33 | 39 | 56 |
P value = 0.444 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 39 | 46 |
TDG MUTATED | 3 | 1 | 1 |
TDG WILD-TYPE | 34 | 38 | 45 |
P value = 0.91 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 47 | 47 | 12 | 16 |
TDG MUTATED | 3 | 2 | 0 | 0 |
TDG WILD-TYPE | 44 | 45 | 12 | 16 |
P value = 0.108 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
SKI MUTATED | 5 | 0 | 1 | 0 |
SKI WILD-TYPE | 56 | 39 | 24 | 36 |
P value = 0.0607 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
SKI MUTATED | 4 | 0 | 2 |
SKI WILD-TYPE | 36 | 45 | 61 |
P value = 0.738 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
SKI MUTATED | 3 | 1 | 1 |
SKI WILD-TYPE | 45 | 43 | 31 |
P value = 0.707 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
SKI MUTATED | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 0 |
SKI WILD-TYPE | 10 | 11 | 16 | 16 | 16 | 24 | 11 | 15 |
P value = 0.88 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
SKI MUTATED | 1 | 2 | 3 |
SKI WILD-TYPE | 42 | 54 | 59 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
SKI MUTATED | 3 | 1 | 1 | 1 |
SKI WILD-TYPE | 70 | 38 | 19 | 28 |
P value = 0.511 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
SKI MUTATED | 3 | 1 | 2 |
SKI WILD-TYPE | 44 | 53 | 58 |
P value = 0.458 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
SKI MUTATED | 2 | 0 | 1 | 3 |
SKI WILD-TYPE | 28 | 35 | 38 | 54 |
P value = 0.862 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 39 | 46 |
SKI MUTATED | 2 | 1 | 2 |
SKI WILD-TYPE | 35 | 38 | 44 |
P value = 0.373 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 47 | 47 | 12 | 16 |
SKI MUTATED | 1 | 4 | 0 | 0 |
SKI WILD-TYPE | 46 | 43 | 12 | 16 |
P value = 0.116 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
MUC5B MUTATED | 2 | 3 | 4 | 5 |
MUC5B WILD-TYPE | 59 | 36 | 21 | 31 |
P value = 0.537 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
MUC5B MUTATED | 5 | 4 | 4 |
MUC5B WILD-TYPE | 35 | 41 | 59 |
P value = 0.463 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
MUC5B MUTATED | 2 | 5 | 2 |
MUC5B WILD-TYPE | 46 | 39 | 30 |
P value = 0.413 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
MUC5B MUTATED | 2 | 1 | 2 | 1 | 0 | 3 | 0 | 0 |
MUC5B WILD-TYPE | 9 | 11 | 14 | 15 | 17 | 22 | 12 | 15 |
P value = 0.883 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
MUC5B MUTATED | 4 | 4 | 6 |
MUC5B WILD-TYPE | 39 | 52 | 56 |
P value = 0.317 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
MUC5B MUTATED | 9 | 2 | 0 | 3 |
MUC5B WILD-TYPE | 64 | 37 | 20 | 26 |
P value = 0.885 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
MUC5B MUTATED | 5 | 4 | 5 |
MUC5B WILD-TYPE | 42 | 50 | 55 |
P value = 0.288 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
MUC5B MUTATED | 4 | 4 | 4 | 2 |
MUC5B WILD-TYPE | 26 | 31 | 35 | 55 |
P value = 0.441 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 39 | 46 |
MUC5B MUTATED | 5 | 2 | 5 |
MUC5B WILD-TYPE | 32 | 37 | 41 |
P value = 0.965 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 47 | 47 | 12 | 16 |
MUC5B MUTATED | 4 | 5 | 1 | 2 |
MUC5B WILD-TYPE | 43 | 42 | 11 | 14 |
P value = 0.685 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
ZNF814 MUTATED | 2 | 2 | 1 | 3 |
ZNF814 WILD-TYPE | 59 | 37 | 24 | 33 |
P value = 0.43 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
ZNF814 MUTATED | 1 | 4 | 3 |
ZNF814 WILD-TYPE | 39 | 41 | 60 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
ZNF814 MUTATED | 3 | 2 | 2 |
ZNF814 WILD-TYPE | 45 | 42 | 30 |
P value = 0.799 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
ZNF814 MUTATED | 0 | 0 | 1 | 1 | 0 | 2 | 1 | 2 |
ZNF814 WILD-TYPE | 11 | 12 | 15 | 15 | 17 | 23 | 11 | 13 |
P value = 0.899 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
ZNF814 MUTATED | 2 | 2 | 4 |
ZNF814 WILD-TYPE | 41 | 54 | 58 |
P value = 0.603 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
ZNF814 MUTATED | 5 | 2 | 1 | 0 |
ZNF814 WILD-TYPE | 68 | 37 | 19 | 29 |
P value = 0.436 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
ZNF814 MUTATED | 3 | 1 | 4 |
ZNF814 WILD-TYPE | 44 | 53 | 56 |
P value = 0.642 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
ZNF814 MUTATED | 2 | 3 | 1 | 2 |
ZNF814 WILD-TYPE | 28 | 32 | 38 | 55 |
P value = 0.193 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 39 | 46 |
ZNF814 MUTATED | 0 | 3 | 4 |
ZNF814 WILD-TYPE | 37 | 36 | 42 |
P value = 0.79 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 47 | 47 | 12 | 16 |
ZNF814 MUTATED | 2 | 4 | 0 | 1 |
ZNF814 WILD-TYPE | 45 | 43 | 12 | 15 |
P value = 0.198 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
MET MUTATED | 5 | 6 | 0 | 4 |
MET WILD-TYPE | 56 | 33 | 25 | 32 |
P value = 0.0895 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
MET MUTATED | 3 | 1 | 9 |
MET WILD-TYPE | 37 | 44 | 54 |
P value = 0.297 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
MET MUTATED | 7 | 5 | 1 |
MET WILD-TYPE | 41 | 39 | 31 |
P value = 0.0374 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
MET MUTATED | 3 | 0 | 4 | 2 | 2 | 0 | 0 | 2 |
MET WILD-TYPE | 8 | 12 | 12 | 14 | 15 | 25 | 12 | 13 |
P value = 0.108 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
MET MUTATED | 3 | 9 | 3 |
MET WILD-TYPE | 40 | 47 | 59 |
P value = 0.00033 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
MET MUTATED | 4 | 1 | 8 | 2 |
MET WILD-TYPE | 69 | 38 | 12 | 27 |
P value = 0.838 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
MET MUTATED | 5 | 4 | 6 |
MET WILD-TYPE | 42 | 50 | 54 |
P value = 0.815 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
MET MUTATED | 3 | 2 | 3 | 7 |
MET WILD-TYPE | 27 | 33 | 36 | 50 |
P value = 0.642 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 39 | 46 |
MET MUTATED | 4 | 5 | 3 |
MET WILD-TYPE | 33 | 34 | 43 |
P value = 0.141 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 47 | 47 | 12 | 16 |
MET MUTATED | 5 | 3 | 0 | 4 |
MET WILD-TYPE | 42 | 44 | 12 | 12 |
P value = 0.825 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
SMARCB1 MUTATED | 2 | 1 | 1 | 0 |
SMARCB1 WILD-TYPE | 59 | 38 | 24 | 36 |
P value = 0.216 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
SMARCB1 MUTATED | 0 | 3 | 1 |
SMARCB1 WILD-TYPE | 40 | 42 | 62 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
SMARCB1 MUTATED | 1 | 1 | 1 |
SMARCB1 WILD-TYPE | 47 | 43 | 31 |
P value = 0.584 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
SMARCB1 MUTATED | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 0 |
SMARCB1 WILD-TYPE | 11 | 11 | 16 | 16 | 17 | 24 | 11 | 15 |
P value = 0.453 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
SMARCB1 MUTATED | 0 | 1 | 3 |
SMARCB1 WILD-TYPE | 43 | 55 | 59 |
P value = 0.413 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
SMARCB1 MUTATED | 3 | 0 | 1 | 0 |
SMARCB1 WILD-TYPE | 70 | 39 | 19 | 29 |
P value = 0.0352 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
SMARCB1 MUTATED | 0 | 0 | 4 |
SMARCB1 WILD-TYPE | 47 | 54 | 56 |
P value = 0.463 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
SMARCB1 MUTATED | 0 | 1 | 0 | 3 |
SMARCB1 WILD-TYPE | 30 | 34 | 39 | 54 |
P value = 0.108 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 39 | 46 |
SMARCB1 MUTATED | 0 | 0 | 3 |
SMARCB1 WILD-TYPE | 37 | 39 | 43 |
P value = 0.33 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 47 | 47 | 12 | 16 |
SMARCB1 MUTATED | 0 | 3 | 0 | 0 |
SMARCB1 WILD-TYPE | 47 | 44 | 12 | 16 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
KDM6A MUTATED | 3 | 2 | 1 | 1 |
KDM6A WILD-TYPE | 58 | 37 | 24 | 35 |
P value = 0.555 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
KDM6A MUTATED | 3 | 2 | 2 |
KDM6A WILD-TYPE | 37 | 43 | 61 |
P value = 0.632 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
KDM6A MUTATED | 1 | 2 | 2 |
KDM6A WILD-TYPE | 47 | 42 | 30 |
P value = 0.613 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
KDM6A MUTATED | 0 | 0 | 1 | 1 | 0 | 3 | 0 | 0 |
KDM6A WILD-TYPE | 11 | 12 | 15 | 15 | 17 | 22 | 12 | 15 |
P value = 0.0302 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
KDM6A MUTATED | 5 | 1 | 1 |
KDM6A WILD-TYPE | 38 | 55 | 61 |
P value = 0.735 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
KDM6A MUTATED | 5 | 1 | 0 | 1 |
KDM6A WILD-TYPE | 68 | 38 | 20 | 28 |
P value = 0.387 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
KDM6A MUTATED | 3 | 3 | 1 |
KDM6A WILD-TYPE | 44 | 51 | 59 |
P value = 0.162 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
KDM6A MUTATED | 1 | 4 | 1 | 1 |
KDM6A WILD-TYPE | 29 | 31 | 38 | 56 |
P value = 0.396 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 39 | 46 |
KDM6A MUTATED | 2 | 0 | 1 |
KDM6A WILD-TYPE | 35 | 39 | 45 |
P value = 0.22 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 47 | 47 | 12 | 16 |
KDM6A MUTATED | 2 | 0 | 1 | 0 |
KDM6A WILD-TYPE | 45 | 47 | 11 | 16 |
P value = 0.132 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
SETD2 MUTATED | 4 | 1 | 0 | 5 |
SETD2 WILD-TYPE | 57 | 38 | 25 | 31 |
P value = 6e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
SETD2 MUTATED | 1 | 9 | 0 |
SETD2 WILD-TYPE | 39 | 36 | 63 |
P value = 0.193 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
SETD2 MUTATED | 2 | 1 | 4 |
SETD2 WILD-TYPE | 46 | 43 | 28 |
P value = 0.526 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
SETD2 MUTATED | 0 | 0 | 0 | 1 | 1 | 4 | 0 | 1 |
SETD2 WILD-TYPE | 11 | 12 | 16 | 15 | 16 | 21 | 12 | 14 |
P value = 0.00764 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
SETD2 MUTATED | 2 | 0 | 8 |
SETD2 WILD-TYPE | 41 | 56 | 54 |
P value = 0.0332 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
SETD2 MUTATED | 9 | 0 | 0 | 1 |
SETD2 WILD-TYPE | 64 | 39 | 20 | 28 |
P value = 0.0177 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
SETD2 MUTATED | 6 | 0 | 4 |
SETD2 WILD-TYPE | 41 | 54 | 56 |
P value = 0.0202 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
SETD2 MUTATED | 5 | 3 | 0 | 2 |
SETD2 WILD-TYPE | 25 | 32 | 39 | 55 |
P value = 0.0728 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 39 | 46 |
SETD2 MUTATED | 4 | 0 | 5 |
SETD2 WILD-TYPE | 33 | 39 | 41 |
P value = 0.343 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 47 | 47 | 12 | 16 |
SETD2 MUTATED | 3 | 6 | 0 | 0 |
SETD2 WILD-TYPE | 44 | 41 | 12 | 16 |
P value = 0.951 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
AHNAK2 MUTATED | 3 | 1 | 1 | 2 |
AHNAK2 WILD-TYPE | 58 | 38 | 24 | 34 |
P value = 0.764 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
AHNAK2 MUTATED | 2 | 1 | 3 |
AHNAK2 WILD-TYPE | 38 | 44 | 60 |
P value = 0.657 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
AHNAK2 MUTATED | 3 | 1 | 2 |
AHNAK2 WILD-TYPE | 45 | 43 | 30 |
P value = 0.973 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
AHNAK2 MUTATED | 0 | 1 | 1 | 0 | 1 | 2 | 0 | 1 |
AHNAK2 WILD-TYPE | 11 | 11 | 15 | 16 | 16 | 23 | 12 | 14 |
P value = 0.794 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
AHNAK2 MUTATED | 1 | 3 | 3 |
AHNAK2 WILD-TYPE | 42 | 53 | 59 |
P value = 0.235 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
AHNAK2 MUTATED | 4 | 0 | 2 | 1 |
AHNAK2 WILD-TYPE | 69 | 39 | 18 | 28 |
P value = 0.295 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
AHNAK2 MUTATED | 4 | 1 | 2 |
AHNAK2 WILD-TYPE | 43 | 53 | 58 |
P value = 0.213 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
AHNAK2 MUTATED | 2 | 3 | 0 | 2 |
AHNAK2 WILD-TYPE | 28 | 32 | 39 | 55 |
P value = 0.257 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 39 | 46 |
AHNAK2 MUTATED | 4 | 2 | 1 |
AHNAK2 WILD-TYPE | 33 | 37 | 45 |
P value = 0.3 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 47 | 47 | 12 | 16 |
AHNAK2 MUTATED | 5 | 1 | 0 | 1 |
AHNAK2 WILD-TYPE | 42 | 46 | 12 | 15 |
P value = 0.0589 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
AHCY MUTATED | 0 | 1 | 0 | 3 |
AHCY WILD-TYPE | 61 | 38 | 25 | 33 |
P value = 0.473 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
AHCY MUTATED | 0 | 2 | 1 |
AHCY WILD-TYPE | 40 | 43 | 62 |
P value = 0.559 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
AHCY MUTATED | 0 | 2 | 2 |
AHCY WILD-TYPE | 43 | 54 | 60 |
P value = 0.889 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
AHCY MUTATED | 3 | 1 | 0 | 0 |
AHCY WILD-TYPE | 70 | 38 | 20 | 29 |
P value = 0.261 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
AHCY MUTATED | 2 | 2 | 0 |
AHCY WILD-TYPE | 45 | 52 | 60 |
P value = 0.646 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
AHCY MUTATED | 0 | 2 | 1 | 1 |
AHCY WILD-TYPE | 30 | 33 | 38 | 56 |
P value = 0.196 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 39 | 46 |
AHCY MUTATED | 2 | 1 | 0 |
AHCY WILD-TYPE | 35 | 38 | 46 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 47 | 47 | 12 | 16 |
AHCY MUTATED | 2 | 1 | 0 | 0 |
AHCY WILD-TYPE | 45 | 46 | 12 | 16 |
P value = 0.29 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
IDUA MUTATED | 4 | 0 | 0 | 1 |
IDUA WILD-TYPE | 57 | 39 | 25 | 35 |
P value = 0.731 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
IDUA MUTATED | 2 | 1 | 2 |
IDUA WILD-TYPE | 38 | 44 | 61 |
P value = 0.3 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
IDUA MUTATED | 1 | 1 | 3 |
IDUA WILD-TYPE | 47 | 43 | 29 |
P value = 0.459 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
IDUA MUTATED | 0 | 1 | 0 | 2 | 0 | 2 | 0 | 0 |
IDUA WILD-TYPE | 11 | 11 | 16 | 14 | 17 | 23 | 12 | 15 |
P value = 0.739 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
IDUA MUTATED | 1 | 1 | 3 |
IDUA WILD-TYPE | 42 | 55 | 59 |
P value = 0.267 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
IDUA MUTATED | 2 | 0 | 1 | 2 |
IDUA WILD-TYPE | 71 | 39 | 19 | 27 |
P value = 0.444 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
IDUA MUTATED | 3 | 1 | 1 |
IDUA WILD-TYPE | 44 | 53 | 59 |
P value = 0.0702 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
IDUA MUTATED | 3 | 0 | 0 | 2 |
IDUA WILD-TYPE | 27 | 35 | 39 | 55 |
P value = 0.83 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 39 | 46 |
IDUA MUTATED | 1 | 2 | 1 |
IDUA WILD-TYPE | 36 | 37 | 45 |
P value = 0.868 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 47 | 47 | 12 | 16 |
IDUA MUTATED | 1 | 2 | 0 | 1 |
IDUA WILD-TYPE | 46 | 45 | 12 | 15 |
P value = 0.391 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
OR2L8 MUTATED | 1 | 2 | 1 | 0 |
OR2L8 WILD-TYPE | 60 | 37 | 24 | 36 |
P value = 0.294 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
OR2L8 MUTATED | 2 | 0 | 2 |
OR2L8 WILD-TYPE | 38 | 45 | 61 |
P value = 0.676 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
OR2L8 MUTATED | 2 | 2 | 0 |
OR2L8 WILD-TYPE | 46 | 42 | 32 |
P value = 0.196 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
OR2L8 MUTATED | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 1 |
OR2L8 WILD-TYPE | 11 | 11 | 14 | 16 | 17 | 25 | 12 | 14 |
P value = 0.375 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
OR2L8 MUTATED | 0 | 3 | 1 |
OR2L8 WILD-TYPE | 43 | 53 | 61 |
P value = 0.0398 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
OR2L8 MUTATED | 0 | 1 | 2 | 1 |
OR2L8 WILD-TYPE | 73 | 38 | 18 | 28 |
P value = 0.39 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
OR2L8 MUTATED | 0 | 1 | 3 |
OR2L8 WILD-TYPE | 47 | 53 | 57 |
P value = 0.508 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
OR2L8 MUTATED | 0 | 0 | 1 | 3 |
OR2L8 WILD-TYPE | 30 | 35 | 38 | 54 |
P value = 0.549 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 39 | 46 |
OR2L8 MUTATED | 0 | 2 | 2 |
OR2L8 WILD-TYPE | 37 | 37 | 44 |
P value = 0.866 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 47 | 47 | 12 | 16 |
OR2L8 MUTATED | 1 | 2 | 0 | 1 |
OR2L8 WILD-TYPE | 46 | 45 | 12 | 15 |
P value = 0.181 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
HOXD8 MUTATED | 1 | 3 | 0 | 0 |
HOXD8 WILD-TYPE | 60 | 36 | 25 | 36 |
P value = 0.785 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
HOXD8 MUTATED | 0 | 1 | 2 |
HOXD8 WILD-TYPE | 40 | 44 | 61 |
P value = 0.0183 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
HOXD8 MUTATED | 0 | 4 | 0 |
HOXD8 WILD-TYPE | 48 | 40 | 32 |
P value = 0.034 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
HOXD8 MUTATED | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 0 |
HOXD8 WILD-TYPE | 11 | 12 | 13 | 15 | 17 | 25 | 12 | 15 |
P value = 0.375 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
HOXD8 MUTATED | 0 | 3 | 1 |
HOXD8 WILD-TYPE | 43 | 53 | 61 |
P value = 0.153 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
HOXD8 MUTATED | 1 | 1 | 2 | 0 |
HOXD8 WILD-TYPE | 72 | 38 | 18 | 29 |
P value = 0.321 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
HOXD8 MUTATED | 1 | 0 | 3 |
HOXD8 WILD-TYPE | 46 | 54 | 57 |
P value = 0.834 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
HOXD8 MUTATED | 1 | 0 | 1 | 2 |
HOXD8 WILD-TYPE | 29 | 35 | 38 | 55 |
P value = 0.0173 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 39 | 46 |
HOXD8 MUTATED | 0 | 4 | 0 |
HOXD8 WILD-TYPE | 37 | 35 | 46 |
P value = 0.0106 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 47 | 47 | 12 | 16 |
HOXD8 MUTATED | 1 | 0 | 0 | 3 |
HOXD8 WILD-TYPE | 46 | 47 | 12 | 13 |
P value = 0.585 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
PAM MUTATED | 1 | 0 | 1 | 1 |
PAM WILD-TYPE | 60 | 39 | 24 | 35 |
P value = 0.787 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
PAM MUTATED | 0 | 1 | 2 |
PAM WILD-TYPE | 40 | 44 | 61 |
P value = 0.115 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
PAM MUTATED | 3 | 0 | 0 |
PAM WILD-TYPE | 45 | 44 | 32 |
P value = 0.104 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
PAM MUTATED | 0 | 0 | 0 | 2 | 0 | 0 | 1 | 0 |
PAM WILD-TYPE | 11 | 12 | 16 | 14 | 17 | 25 | 11 | 15 |
P value = 0.189 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
PAM MUTATED | 2 | 1 | 0 |
PAM WILD-TYPE | 41 | 55 | 62 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
PAM MUTATED | 2 | 1 | 0 | 0 |
PAM WILD-TYPE | 71 | 38 | 20 | 29 |
P value = 0.392 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
PAM MUTATED | 1 | 2 | 0 |
PAM WILD-TYPE | 46 | 52 | 60 |
P value = 0.0291 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
PAM MUTATED | 0 | 0 | 3 | 0 |
PAM WILD-TYPE | 30 | 35 | 36 | 57 |
P value = 0.137 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 61 | 39 | 25 | 36 |
CSGALNACT2 MUTATED | 1 | 0 | 1 | 3 |
CSGALNACT2 WILD-TYPE | 60 | 39 | 24 | 33 |
P value = 0.327 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 63 |
CSGALNACT2 MUTATED | 3 | 1 | 1 |
CSGALNACT2 WILD-TYPE | 37 | 44 | 62 |
P value = 0.831 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 44 | 32 |
CSGALNACT2 MUTATED | 1 | 2 | 1 |
CSGALNACT2 WILD-TYPE | 47 | 42 | 31 |
P value = 0.774 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 16 | 17 | 25 | 12 | 15 |
CSGALNACT2 MUTATED | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 1 |
CSGALNACT2 WILD-TYPE | 10 | 12 | 16 | 15 | 17 | 24 | 12 | 14 |
P value = 0.741 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 56 | 62 |
CSGALNACT2 MUTATED | 1 | 1 | 3 |
CSGALNACT2 WILD-TYPE | 42 | 55 | 59 |
P value = 0.618 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 73 | 39 | 20 | 29 |
CSGALNACT2 MUTATED | 2 | 1 | 0 | 2 |
CSGALNACT2 WILD-TYPE | 71 | 38 | 20 | 27 |
P value = 0.525 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 47 | 54 | 60 |
CSGALNACT2 MUTATED | 1 | 3 | 1 |
CSGALNACT2 WILD-TYPE | 46 | 51 | 59 |
P value = 0.728 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 30 | 35 | 39 | 57 |
CSGALNACT2 MUTATED | 0 | 2 | 1 | 2 |
CSGALNACT2 WILD-TYPE | 30 | 33 | 38 | 55 |
-
Mutation data file = transformed.cor.cli.txt
-
Molecular subtypes file = KIRP-TP.transferedmergedcluster.txt
-
Number of patients = 161
-
Number of significantly mutated genes = 19
-
Number of Molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.