Clinical Features	Time to Death		AGE		NEOPLASM.DISEASESTAGE		PATHOLOGY.T.STAGE		PATHOLOGY.N.STAGE		PATHOLOGY.M.STAGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		NUMBERPACKYEARSSMOKED		RACE		ETHNICITY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	8 (4%)	213	1.4988e-14	1.06e-11	0.43808	1	0.00154	0.999	0.0076299	1	0.0066199	1	0.082379	1	0.044037	1	NA	NA	NA	NA	0.37014	1	1	1
1q gain	15 (7%)	206	3.9992e-08	2.81e-05	0.75549	1	3e-05	0.0203	2e-05	0.0137	0.11178	1	0.15439	1	0.13729	1	0.048327	1	NA	NA	0.090099	1	1	1
2p gain	38 (17%)	183	0.79117	1	0.23518	1	0.074599	1	0.55131	1	0.10372	1	0.00301	1	0.69398	1	0.60601	1	0.36368	1	0.73985	1	0.6727	1
2q gain	41 (19%)	180	0.74663	1	0.42056	1	0.02131	1	0.66016	1	0.077769	1	0.0084699	1	0.70174	1	0.46332	1	0.36368	1	0.67322	1	1	1
3p gain	62 (28%)	159	0.12033	1	0.92308	1	0.02227	1	0.0080899	1	0.8441	1	0.21298	1	0.41111	1	0.018862	1	0.24714	1	0.49248	1	1	1
3q gain	73 (33%)	148	0.25398	1	0.62094	1	0.18435	1	0.061489	1	0.88616	1	0.13581	1	0.26863	1	0.16113	1	0.51804	1	0.19336	1	0.72019	1
4p gain	9 (4%)	212	0.042472	1	0.03656	1	0.063679	1	0.39752	1	0.31967	1	0.24669	1	1	1	0.32353	1	NA	NA	0.60135	1	1	1
4q gain	8 (4%)	213	0.042472	1	0.097393	1	0.24151	1	0.35042	1	0.13117	1	0.5956	1	1	1	NA	NA	NA	NA	0.76164	1	1	1
5p gain	29 (13%)	192	0.97923	1	0.508	1	0.2613	1	0.17624	1	0.46824	1	0.37231	1	0.66365	1	0.15384	1	0.86825	1	0.4836	1	0.60482	1
5q gain	29 (13%)	192	0.97923	1	0.86532	1	0.26029	1	0.2673	1	0.87977	1	0.37263	1	0.66365	1	0.15384	1	0.86825	1	0.64394	1	0.60813	1
6p gain	8 (4%)	213	0.59461	1	0.40463	1	0.00164	1	0.00062999	0.415	0.21743	1	0.0351	1	0.69123	1	1	1	NA	NA	1	1	1	1
6q gain	6 (3%)	215	0.8151	1	0.12659	1	0.01029	1	0.0064799	1	0.055869	1	0.01985	1	0.35608	1	1	1	NA	NA	0.718	1	1	1
7p gain	130 (59%)	91	0.43463	1	0.077049	1	0.00141	0.916	0.03075	1	0.70418	1	0.68096	1	0.035315	1	0.059494	1	0.67831	1	0.82412	1	0.4867	1
7q gain	131 (59%)	90	0.42182	1	0.056033	1	0.00086999	0.572	0.02501	1	0.71118	1	0.79502	1	0.033517	1	0.059494	1	0.67831	1	0.79429	1	0.31645	1
8p gain	14 (6%)	207	0.11814	1	0.89792	1	0.17018	1	0.10645	1	0.24018	1	1	1	0.23057	1	0.107	1	NA	NA	0.091129	1	1	1
8q gain	18 (8%)	203	0.11814	1	0.47445	1	0.00091999	0.604	0.00043	0.285	0.00345	1	0.20153	1	0.053347	1	0.43427	1	0.88226	1	0.088959	1	1	1
9p gain	3 (1%)	218	NA	NA	0.49101	1	0.046	1	0.03541	1	NA	NA	0.63092	1	1	1	NA	NA	NA	NA	0.61121	1	1	1
10p gain	8 (4%)	213	0.74508	1	0.34197	1	0.26163	1	0.42106	1	1	1	0.03169	1	0.69123	1	NA	NA	NA	NA	0.0062899	1	1	1
10q gain	8 (4%)	213	0.74508	1	0.34197	1	0.26499	1	0.42293	1	1	1	0.03298	1	0.69123	1	NA	NA	NA	NA	0.0058899	1	1	1
11p gain	10 (5%)	211	0.52713	1	0.10527	1	0.11365	1	0.15277	1	0.51729	1	0.03577	1	0.15275	1	NA	NA	NA	NA	0.24149	1	1	1
11q gain	10 (5%)	211	0.51263	1	0.089589	1	0.18053	1	0.14835	1	0.69286	1	0.21982	1	0.033822	1	0.74718	1	1	1	0.38969	1	1	1
12p gain	91 (41%)	130	0.067834	1	0.56058	1	0.1403	1	0.90917	1	0.57467	1	0.21408	1	0.0097361	1	0.41456	1	0.97327	1	0.86759	1	0.08021	1
12q gain	91 (41%)	130	0.067834	1	0.56058	1	0.13946	1	0.90986	1	0.57538	1	0.21658	1	0.0097361	1	0.41456	1	0.97327	1	0.86791	1	0.08021	1
13q gain	23 (10%)	198	0.80396	1	0.40752	1	0.40386	1	0.54265	1	1	1	0.92803	1	0.8107	1	0.38047	1	NA	NA	0.75477	1	0.25401	1
14q gain	3 (1%)	218	NA	NA	NA	NA	0.03597	1	0.02007	1	NA	NA	0.62893	1	0.19626	1	NA	NA	NA	NA	NA	NA	1	1
15q gain	5 (2%)	216	0.5999	1	1	1	0.27866	1	0.23757	1	NA	NA	0.49791	1	0.14144	1	NA	NA	NA	NA	0.67002	1	1	1
16p gain	117 (53%)	104	0.20048	1	0.17488	1	0.93252	1	0.70436	1	1	1	0.61865	1	0.0070222	1	0.68132	1	0.65097	1	0.0138	1	0.084791	1
16q gain	113 (51%)	108	0.046263	1	0.34705	1	0.75766	1	0.37185	1	0.64997	1	0.20926	1	0.037176	1	0.24646	1	0.96017	1	0.072529	1	0.091744	1
17p gain	135 (61%)	86	0.52993	1	0.0031865	1	5e-04	0.33	0.00383	1	0.77143	1	0.00021	0.14	0.12606	1	0.71522	1	0.60585	1	0.4111	1	0.28	1
17q gain	149 (67%)	72	0.24497	1	0.012773	1	0.057649	1	0.18938	1	0.45295	1	0.0054499	1	0.43182	1	0.853	1	0.70961	1	0.4112	1	0.45235	1
18p gain	11 (5%)	210	0.18786	1	0.78335	1	0.17946	1	0.56314	1	0.39228	1	0.31867	1	0.18553	1	0.65991	1	0.78979	1	0.20403	1	1	1
18q gain	8 (4%)	213	0.62301	1	0.62398	1	0.50883	1	0.34846	1	NA	NA	0.77691	1	0.44502	1	0.17628	1	NA	NA	0.33178	1	1	1
19p gain	4 (2%)	217	0.76751	1	0.24468	1	0.58436	1	0.52879	1	1	1	1	1	1	1	NA	NA	NA	NA	0.63111	1	1	1
19q gain	4 (2%)	217	0.76751	1	0.24468	1	0.58276	1	0.52646	1	1	1	1	1	1	1	NA	NA	NA	NA	0.62951	1	1	1
20p gain	74 (33%)	147	0.82732	1	0.10482	1	0.69903	1	0.32255	1	0.89714	1	0.93525	1	0.63599	1	0.49499	1	0.75204	1	0.59247	1	0.72007	1
20q gain	76 (34%)	145	0.84652	1	0.095955	1	0.56095	1	0.24709	1	0.80468	1	0.87026	1	0.53081	1	0.49499	1	0.75204	1	0.55052	1	0.72053	1
21q gain	15 (7%)	206	0.62301	1	0.056569	1	0.95582	1	0.83816	1	0.69273	1	0.17096	1	0.7677	1	0.75118	1	NA	NA	0.11507	1	0.51755	1
22q gain	3 (1%)	218	NA	NA	0.3216	1	0.27188	1	0.39224	1	NA	NA	1	1	0.55969	1	NA	NA	NA	NA	0.61249	1	0.14041	1
xq gain	70 (32%)	151	0.33824	1	0.98028	1	0.01856	1	0.03907	1	0.67294	1	0.96294	1	0.077466	1	0.021877	1	0.86132	1	0.23049	1	0.72078	1
1p loss	21 (10%)	200	0.87041	1	0.53198	1	0.18586	1	0.19934	1	0.69492	1	0.50926	1	0.31646	1	0.86108	1	NA	NA	0.36583	1	0.54309	1
1q loss	16 (7%)	205	0.48425	1	0.47441	1	0.55492	1	0.77749	1	0.69327	1	0.53404	1	0.16333	1	0.86108	1	NA	NA	0.45919	1	0.54309	1
3p loss	17 (8%)	204	0.00050597	0.334	0.13652	1	4e-04	0.266	0.00117	0.764	0.49141	1	0.082709	1	1	1	0.18142	1	0.98245	1	0.45444	1	1	1
3q loss	5 (2%)	216	3.2583e-12	2.29e-09	0.14948	1	0.01713	1	0.02039	1	0.082199	1	0.17163	1	0.6249	1	NA	NA	NA	NA	1	1	1	1
4p loss	20 (9%)	201	0.065128	1	0.0088762	1	9.9999e-06	0.00696	9.9999e-06	0.00696	0.00107	0.7	0.84297	1	6.401e-05	0.0433	0.18142	1	1	1	0.1014	1	0.51755	1
4q loss	21 (10%)	200	0.13326	1	0.057753	1	2e-05	0.0137	5e-05	0.0338	0.0057699	1	0.32113	1	0.0013988	0.911	0.12	1	0.53164	1	0.14857	1	0.54309	1
5p loss	8 (4%)	213	1.059e-06	0.00074	0.071955	1	0.02632	1	0.0080399	1	0.01779	1	0.21035	1	0.044037	1	NA	NA	NA	NA	0.74846	1	0.26301	1
5q loss	8 (4%)	213	2.4664e-05	0.0167	0.016561	1	0.04717	1	0.0078999	1	0.03377	1	0.2098	1	0.044037	1	NA	NA	NA	NA	0.74934	1	0.26301	1
6p loss	16 (7%)	205	0.12347	1	0.27459	1	0.02342	1	0.04593	1	0.04788	1	0.7768	1	0.16333	1	0.9344	1	NA	NA	0.04595	1	1	1
6q loss	19 (9%)	202	0.62499	1	0.94502	1	0.03121	1	0.00133	0.867	0.064009	1	0.3073	1	0.029786	1	0.2785	1	0.67667	1	0.03186	1	1	1
8p loss	11 (5%)	210	0.00032779	0.218	0.28345	1	0.04506	1	0.49722	1	0.00405	1	0.0079499	1	0.301	1	0.48392	1	NA	NA	0.03572	1	1	1
8q loss	6 (3%)	215	0.00046183	0.306	0.9498	1	0.24323	1	0.65502	1	NA	NA	0.28458	1	0.35608	1	NA	NA	NA	NA	0.22391	1	1	1
9p loss	26 (12%)	195	0.016289	1	0.51113	1	9.9999e-06	0.00696	9.9999e-06	0.00696	0.01814	1	0.074419	1	0.0045473	1	0.0071691	1	0.023362	1	0.04221	1	0.60236	1
9q loss	27 (12%)	194	0.0033672	1	0.4544	1	9.9999e-06	0.00696	2e-05	0.0137	0.01794	1	0.40603	1	0.0062698	1	0.017667	1	0.21347	1	0.10116	1	0.60085	1
10p loss	13 (6%)	208	0.0069736	1	0.9252	1	0.00199	1	0.00382	1	0.03522	1	0.03719	1	0.20206	1	0.13899	1	NA	NA	0.83951	1	1	1
10q loss	13 (6%)	208	0.0045068	1	0.349	1	0.00077999	0.513	0.00104	0.681	0.0133	1	0.13	1	0.20206	1	0.041468	1	NA	NA	0.49337	1	1	1
11p loss	14 (6%)	207	2.997e-07	0.00021	0.083843	1	0.0109	1	0.00389	1	0.058579	1	0.41266	1	0.54802	1	0.19033	1	0.67837	1	1	1	1	1
11q loss	16 (7%)	205	0.0035114	1	0.24472	1	9.9999e-06	0.00696	9.9999e-06	0.00696	0.052229	1	0.097209	1	0.40058	1	0.27476	1	0.88226	1	0.1162	1	1	1
13q loss	21 (10%)	200	0.00016624	0.112	0.011015	1	0.00031	0.206	8.9999e-05	0.0607	0.00209	1	0.52412	1	0.00014882	0.1	0.2785	1	NA	NA	0.20465	1	0.5906	1
14q loss	39 (18%)	182	0.0065305	1	0.83459	1	0.0054999	1	0.00447	1	0.02213	1	0.1534	1	0.010579	1	0.044461	1	0.082186	1	1	1	1	1
15q loss	24 (11%)	197	0.0020495	1	0.078068	1	0.00326	1	0.00187	1	0.03538	1	0.32555	1	0.33985	1	0.12539	1	NA	NA	0.44287	1	1	1
16p loss	4 (2%)	217	NA	NA	0.74815	1	0.094349	1	0.090169	1	NA	NA	1	1	0.071032	1	NA	NA	NA	NA	NA	NA	1	1
16q loss	6 (3%)	215	1.0458e-07	7.33e-05	0.20239	1	0.01795	1	0.04691	1	0.084289	1	0.76098	1	0.35608	1	NA	NA	NA	NA	0.63326	1	1	1
17p loss	7 (3%)	214	0.72045	1	0.8398	1	0.00172	1	0.0077399	1	0.03361	1	0.03443	1	0.10399	1	0.32353	1	NA	NA	1	1	1	1
18p loss	33 (15%)	188	0.0019007	1	0.11647	1	2e-05	0.0137	9.9999e-06	0.00696	0.01756	1	0.0216	1	0.034712	1	0.40034	1	0.44976	1	0.42786	1	1	1
18q loss	36 (16%)	185	1.0589e-06	0.00074	0.41124	1	9.9999e-06	0.00696	9.9999e-06	0.00696	0.01372	1	0.03958	1	0.069357	1	0.28826	1	0.65991	1	0.093039	1	1	1
19p loss	13 (6%)	208	0.00019885	0.133	0.17234	1	0.0056699	1	0.00359	1	0.058779	1	0.18924	1	0.52642	1	0.12	1	0.41912	1	1	1	1	1
19q loss	12 (5%)	209	1.2584e-12	8.86e-10	0.97155	1	0.00013	0.0876	2e-04	0.134	0.058419	1	0.10234	1	0.10533	1	0.12	1	0.49569	1	0.68538	1	1	1
21q loss	33 (15%)	188	0.30209	1	0.41652	1	0.01175	1	0.00446	1	0.65134	1	0.17493	1	0.034712	1	0.079114	1	0.73475	1	0.57326	1	1	1
22q loss	50 (23%)	171	0.0016478	1	0.11205	1	9.9999e-06	0.00696	9.9999e-06	0.00696	0.01187	1	0.03288	1	0.00028874	0.193	0.29727	1	0.47715	1	0.20071	1	0.39478	1
xq loss	21 (10%)	200	1.8395e-06	0.00128	0.13506	1	0.00017	0.114	9.9999e-06	0.00696	0.03514	1	0.25386	1	0.071742	1	0.27047	1	0.49569	1	0.01319	1	1	1