Clinical Features CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 9 (3%) 279 9.9999e-06 0.00708 9.9999e-05 0.0586 0.61095 1 0.082179 1 0.00065999 0.36 0.02569 1 0.4787 1 0.083909 1 0.04708 1 0.02884 1 1q gain 17 (6%) 271 9.9999e-06 0.00708 9.9999e-06 0.00708 0.93151 1 0.061919 1 9.9999e-06 0.00708 0.00191 0.993 0.51654 1 0.00025 0.141 0.0063499 1 0.01145 1 2p gain 42 (15%) 246 9.9999e-06 0.00708 0.02073 1 0.82173 1 0.10005 1 0.61749 1 0.063999 1 0.12255 1 0.072899 1 0.78265 1 0.16858 1 2q gain 47 (16%) 241 9.9999e-06 0.00708 0.02977 1 0.97055 1 0.01645 1 0.7288 1 0.02776 1 0.21911 1 0.053949 1 0.41803 1 0.40709 1 3p gain 74 (26%) 214 9.9999e-06 0.00708 0.00034 0.189 0.19985 1 0.00011 0.0641 9.9999e-06 0.00708 2e-05 0.0122 0.04091 1 6.9999e-05 0.0413 0.090619 1 0.01576 1 3q gain 94 (33%) 194 9.9999e-06 0.00708 0.01226 1 0.23227 1 0.01691 1 9.9999e-06 0.00708 0.00014 0.0805 0.0094299 1 0.00016 0.0915 0.52129 1 0.01331 1 4p gain 10 (3%) 278 0.24469 1 0.55208 1 0.79087 1 0.36635 1 0.19186 1 0.57202 1 0.61446 1 0.92121 1 0.83503 1 0.94943 1 4q gain 9 (3%) 279 0.51813 1 0.55238 1 0.79149 1 0.36644 1 0.36091 1 0.64975 1 0.27785 1 0.85618 1 0.49272 1 1 1 5p gain 33 (11%) 255 9.9999e-06 0.00708 0.00217 1 0.64915 1 0.44715 1 0.0075099 1 0.00242 1 0.57152 1 0.11802 1 0.31018 1 0.25585 1 5q gain 31 (11%) 257 9.9999e-06 0.00708 0.00083999 0.455 0.57352 1 0.28104 1 0.00162 0.857 0.00073999 0.403 0.31388 1 0.15355 1 0.45393 1 0.37422 1 6p gain 10 (3%) 278 0.04823 1 0.01225 1 0.071599 1 0.34217 1 0.0074499 1 0.28382 1 0.16648 1 0.2515 1 0.1022 1 0.059769 1 6q gain 8 (3%) 280 0.02207 1 0.0079299 1 0.5428 1 0.28992 1 0.04776 1 0.48424 1 0.22641 1 0.64889 1 0.12693 1 0.086389 1 7p gain 172 (60%) 116 9.9999e-06 0.00708 9.9999e-06 0.00708 0.00313 1 2e-05 0.0122 9.9999e-06 0.00708 9.9999e-06 0.00708 0.04891 1 9.9999e-06 0.00708 7.9999e-05 0.0471 9.9999e-06 0.00708 7q gain 173 (60%) 115 9.9999e-06 0.00708 9.9999e-06 0.00708 0.0065899 1 2e-05 0.0122 9.9999e-06 0.00708 9.9999e-06 0.00708 0.070499 1 9.9999e-06 0.00708 0.00012 0.0695 2e-05 0.0122 8p gain 20 (7%) 268 0.74777 1 0.00331 1 0.16305 1 0.58405 1 0.11056 1 0.13715 1 0.4553 1 0.53854 1 0.40513 1 0.24099 1 8q gain 25 (9%) 263 0.1265 1 3e-05 0.0181 0.22739 1 0.65183 1 0.0179 1 0.14581 1 0.15068 1 0.10981 1 0.04668 1 0.13502 1 9p gain 3 (1%) 285 0.87649 1 NA NA NA NA NA NA 0.36467 1 0.20368 1 0.40968 1 0.37159 1 0.29803 1 0.0144 1 10p gain 9 (3%) 279 0.00107 0.575 0.070249 1 1 1 0.42986 1 0.058249 1 0.30583 1 0.14347 1 0.68382 1 0.89164 1 0.18612 1 10q gain 9 (3%) 279 0.00111 0.594 0.070479 1 1 1 0.42987 1 0.057959 1 0.30671 1 0.14128 1 0.68496 1 0.89379 1 0.18581 1 11p gain 11 (4%) 277 0.00033 0.184 0.01532 1 0.91065 1 0.02438 1 0.12135 1 0.00288 1 0.92816 1 0.94964 1 0.81941 1 0.22411 1 11q gain 10 (3%) 278 9.9999e-06 0.00708 0.00242 1 0.75394 1 0.04228 1 0.03435 1 0.02617 1 0.84895 1 1 1 0.81792 1 0.22606 1 12p gain 112 (39%) 176 0.0052199 1 0.15319 1 0.0242 1 0.17988 1 0.01524 1 0.00249 1 0.092189 1 0.01673 1 0.66204 1 0.070399 1 12q gain 112 (39%) 176 0.0056699 1 0.1512 1 0.02407 1 0.1815 1 0.01506 1 0.00209 1 0.091699 1 0.01686 1 0.66436 1 0.068949 1 13q gain 28 (10%) 260 0.22348 1 0.85433 1 1 1 0.60834 1 0.1398 1 0.78549 1 0.879 1 0.46242 1 0.31728 1 0.52299 1 14q gain 3 (1%) 285 0.24227 1 0.01635 1 0.45046 1 0.85161 1 0.055389 1 0.20283 1 1 1 0.36961 1 0.29978 1 0.01367 1 15q gain 5 (2%) 283 0.00017 0.0971 0.02634 1 0.20728 1 0.38284 1 0.53163 1 0.37624 1 0.44835 1 0.76952 1 NA NA NA NA 16p gain 153 (53%) 135 9.9999e-06 0.00708 0.085089 1 0.8466 1 0.02113 1 9.9999e-06 0.00708 9.9999e-06 0.00708 0.00057999 0.318 9.9999e-06 0.00708 0.0097999 1 0.00011 0.0641 16q gain 148 (51%) 140 9.9999e-06 0.00708 0.0422 1 0.9064 1 0.0201 1 9.9999e-06 0.00708 9.9999e-06 0.00708 9.9999e-06 0.00708 9.9999e-06 0.00708 0.00223 1 5e-05 0.0298 17p gain 174 (60%) 114 9.9999e-06 0.00708 9.9999e-06 0.00708 0.00215 1 9.9999e-06 0.00708 9.9999e-06 0.00708 9.9999e-06 0.00708 0.00389 1 2e-05 0.0122 9.9999e-06 0.00708 9.9999e-06 0.00708 17q gain 191 (66%) 97 9.9999e-06 0.00708 9.9999e-06 0.00708 0.0241 1 2e-05 0.0122 9.9999e-06 0.00708 9.9999e-06 0.00708 0.03446 1 4e-05 0.0239 0.00022 0.125 5e-05 0.0298 18p gain 12 (4%) 276 0.00247 1 0.24378 1 0.52572 1 0.13369 1 0.65491 1 0.4753 1 0.19027 1 0.51181 1 0.46482 1 0.604 1 18q gain 9 (3%) 279 0.00316 1 0.10742 1 0.26167 1 0.057569 1 0.69377 1 0.072859 1 0.40044 1 0.44673 1 0.32151 1 0.083699 1 19p gain 4 (1%) 284 0.00168 0.887 0.28177 1 0.27734 1 0.24286 1 0.13649 1 0.23552 1 1 1 0.47851 1 1 1 0.33943 1 19q gain 4 (1%) 284 0.00175 0.915 0.2806 1 0.27889 1 0.24423 1 0.13874 1 0.23411 1 1 1 0.47643 1 1 1 0.33744 1 20p gain 99 (34%) 189 3e-05 0.0181 0.097049 1 0.01669 1 0.0060999 1 0.0072599 1 0.00181 0.943 0.01224 1 0.00359 1 0.17803 1 0.061079 1 20q gain 101 (35%) 187 0.00015 0.0861 0.11287 1 0.02723 1 0.01078 1 0.0289 1 0.00449 1 0.01896 1 0.0052299 1 0.33946 1 0.04336 1 21q gain 19 (7%) 269 0.51629 1 0.40321 1 0.77955 1 0.452 1 0.22201 1 0.30658 1 0.14851 1 0.21768 1 0.50657 1 0.14057 1 22q gain 5 (2%) 283 0.0089799 1 1 1 1 1 0.31145 1 1 1 0.68075 1 0.45106 1 0.29932 1 0.86763 1 1 1 xq gain 91 (32%) 197 9.9999e-06 0.00708 0.00025 0.141 0.28332 1 0.068559 1 9.9999e-06 0.00708 9.9999e-06 0.00708 0.01103 1 9.9999e-06 0.00708 0.01099 1 0.00394 1 1p loss 30 (10%) 258 9.9999e-06 0.00708 0.069639 1 0.47755 1 0.16783 1 0.00026 0.146 0.0016 0.848 0.35504 1 0.17697 1 0.8362 1 0.088319 1 1q loss 21 (7%) 267 3e-04 0.168 0.6192 1 1 1 0.065839 1 0.22359 1 0.01477 1 0.29265 1 0.084879 1 0.56995 1 0.19923 1 2p loss 5 (2%) 283 0.27969 1 0.01694 1 0.1781 1 0.56743 1 0.04962 1 0.20946 1 0.23739 1 0.86966 1 NA NA NA NA 2q loss 3 (1%) 285 0.66035 1 NA NA NA NA NA NA 0.36612 1 0.20318 1 0.52929 1 1 1 NA NA NA NA 3p loss 22 (8%) 266 9.9999e-06 0.00708 3e-05 0.0181 0.26923 1 0.0053599 1 9.9999e-06 0.00708 9.9999e-05 0.0586 0.43066 1 0.02716 1 0.04714 1 0.01506 1 3q loss 7 (2%) 281 2e-05 0.0122 0.02572 1 0.37003 1 0.088209 1 0.0064699 1 0.02685 1 0.40236 1 0.83871 1 0.39552 1 0.35668 1 4p loss 25 (9%) 263 9.9999e-06 0.00708 9.9999e-06 0.00708 0.30748 1 0.00091999 0.498 9.9999e-06 0.00708 9.9999e-06 0.00708 0.26129 1 0.10871 1 0.0063499 1 9.9999e-06 0.00708 4q loss 26 (9%) 262 9.9999e-06 0.00708 9.9999e-06 0.00708 0.51019 1 0.0027 1 9.9999e-06 0.00708 3e-05 0.0181 0.37931 1 0.16992 1 0.0064999 1 5.9999e-05 0.0355 5p loss 8 (3%) 280 0.17007 1 0.01239 1 0.44216 1 0.0153 1 0.0086699 1 0.00023 0.13 0.072309 1 0.03942 1 0.01288 1 0.00017 0.0971 5q loss 8 (3%) 280 0.1689 1 0.01211 1 0.87461 1 0.01541 1 0.0087599 1 0.00037 0.205 0.071679 1 0.0398 1 0.01229 1 9.9999e-06 0.00708 6p loss 21 (7%) 267 9.9999e-06 0.00708 0.093679 1 0.54859 1 0.31648 1 0.0060099 1 0.00013 0.0749 0.01948 1 0.051639 1 0.4721 1 0.10992 1 6q loss 26 (9%) 262 9.9999e-06 0.00708 0.01612 1 0.95486 1 0.20388 1 0.00015 0.0861 0.00011 0.0641 0.30679 1 0.27786 1 0.1013 1 0.092519 1 8p loss 16 (6%) 272 0.0017 0.894 0.3832 1 0.23269 1 0.17734 1 0.0017 0.894 0.00334 1 0.89942 1 0.75598 1 0.37003 1 0.31498 1 8q loss 9 (3%) 279 0.00265 1 0.76643 1 0.54582 1 0.01361 1 0.00156 0.828 0.00175 0.915 0.91223 1 0.78411 1 0.68603 1 0.55272 1 9p loss 33 (11%) 255 9.9999e-06 0.00708 2e-05 0.0122 0.48104 1 0.01149 1 9.9999e-06 0.00708 9.9999e-06 0.00708 0.0064899 1 0.25167 1 0.0059399 1 0.00066999 0.365 9q loss 34 (12%) 254 9.9999e-06 0.00708 9.9999e-06 0.00708 0.080609 1 0.01581 1 9.9999e-06 0.00708 9.9999e-06 0.00708 0.00401 1 0.13416 1 0.00124 0.661 0.00011 0.0641 10p loss 16 (6%) 272 9.9999e-06 0.00708 0.00012 0.0695 0.65419 1 0.066629 1 0.00017 0.0971 0.00264 1 0.39794 1 0.91489 1 0.01901 1 0.0061499 1 10q loss 17 (6%) 271 9.9999e-06 0.00708 0.00093999 0.508 0.51615 1 0.01188 1 3e-05 0.0181 0.00172 0.901 0.083529 1 0.8622 1 0.002 1 0.00107 0.575 11p loss 18 (6%) 270 9.9999e-06 0.00708 0.00043 0.237 0.69244 1 0.62512 1 0.00021 0.119 0.00232 1 0.29596 1 0.063839 1 0.0192 1 0.0067399 1 11q loss 21 (7%) 267 9.9999e-06 0.00708 0.00054999 0.302 0.16055 1 0.11862 1 0.00012 0.0695 0.00135 0.718 0.65874 1 0.10133 1 0.03639 1 0.03972 1 13q loss 24 (8%) 264 9.9999e-06 0.00708 9.9999e-06 0.00708 0.58345 1 5e-05 0.0298 9.9999e-06 0.00708 9.9999e-06 0.00708 0.04274 1 0.0072599 1 0.00395 1 5.9999e-05 0.0355 14q loss 47 (16%) 241 9.9999e-06 0.00708 0.00218 1 0.0085999 1 0.00028 0.157 9.9999e-06 0.00708 9.9999e-06 0.00708 0.20699 1 0.77484 1 0.0041 1 0.0064399 1 15q loss 31 (11%) 257 9.9999e-06 0.00708 0.00055999 0.307 0.11488 1 0.0060399 1 3e-05 0.0181 9.9999e-06 0.00708 0.093819 1 0.63595 1 0.066809 1 0.00267 1 16p loss 4 (1%) 284 0.04232 1 0.00428 1 1 1 0.48686 1 0.0169 1 0.03319 1 0.83955 1 0.2038 1 0.11381 1 0.01248 1 16q loss 7 (2%) 281 0.00041 0.227 0.00025 0.141 1 1 0.32738 1 0.00036 0.2 0.095129 1 0.40437 1 0.23493 1 0.03271 1 0.052909 1 17p loss 12 (4%) 276 0.0038 1 5e-05 0.0298 0.48519 1 0.1101 1 0.00021 0.119 0.00307 1 0.53569 1 0.26723 1 0.0065199 1 0.00117 0.625 18p loss 42 (15%) 246 9.9999e-06 0.00708 9.9999e-06 0.00708 0.02186 1 0.00169 0.891 9.9999e-06 0.00708 9.9999e-06 0.00708 0.23381 1 0.00105 0.565 0.02012 1 0.00062999 0.345 18q loss 45 (16%) 243 9.9999e-06 0.00708 9.9999e-06 0.00708 0.066179 1 7.9999e-05 0.0471 9.9999e-06 0.00708 9.9999e-06 0.00708 0.12676 1 0.00080999 0.44 0.0071799 1 0.00032 0.179 19p loss 17 (6%) 271 9.9999e-05 0.0586 0.0059299 1 0.91729 1 0.10552 1 0.02209 1 0.00426 1 0.22616 1 0.10257 1 0.089089 1 0.057839 1 19q loss 16 (6%) 272 9.9999e-06 0.00708 0.01578 1 0.61991 1 0.03573 1 0.0091999 1 0.01387 1 0.40067 1 0.15018 1 0.091279 1 0.27832 1 21q loss 43 (15%) 245 0.00047 0.259 0.35438 1 0.24742 1 0.26803 1 0.15999 1 0.23614 1 0.62287 1 0.22247 1 0.80836 1 0.085879 1 22q loss 60 (21%) 228 9.9999e-06 0.00708 9.9999e-06 0.00708 0.78058 1 0.0087399 1 9.9999e-06 0.00708 9.9999e-06 0.00708 0.98311 1 0.45137 1 0.055499 1 0.01095 1 xq loss 30 (10%) 258 9.9999e-06 0.00708 8.9999e-05 0.0528 0.59584 1 0.0098999 1 9.9999e-06 0.00708 0.00101 0.544 0.27132 1 0.4505 1 0.04938 1 0.02106 1