This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 31 focal events and 10 molecular subtypes across 288 patients, 100 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_2p23.2 cnv correlated to 'CN_CNMF'.
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amp_2q32.1 cnv correlated to 'CN_CNMF'.
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amp_3q27.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_5q35.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_7q31.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_17q25.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_19p13.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_1p36.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_2q22.1 cnv correlated to 'MRNASEQ_CNMF'.
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del_3p22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_4q34.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_5q35.2 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6p12.3 cnv correlated to 'CN_CNMF'.
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del_6q22.31 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_6q25.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_9p21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10q21.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_11q22.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_11q23.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_14q11.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_14q24.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_15q13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_16q24.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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del_19p13.3 cnv correlated to 'CN_CNMF'.
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del_19q13.42 cnv correlated to 'CN_CNMF'.
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del_22q12.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_xp11.4 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_xq28 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
amp 7q31 2 | 177 (61%) | 111 |
1e-05 (0.0031) |
1e-05 (0.0031) |
0.0134 (1.00) |
5e-05 (0.0121) |
1e-05 (0.0031) |
1e-05 (0.0031) |
0.0508 (1.00) |
1e-05 (0.0031) |
3e-05 (0.00756) |
1e-05 (0.0031) |
del 9p21 3 | 40 (14%) | 248 |
1e-05 (0.0031) |
1e-05 (0.0031) |
0.37 (1.00) |
0.00073 (0.159) |
1e-05 (0.0031) |
1e-05 (0.0031) |
0.00038 (0.0844) |
0.0302 (1.00) |
0.0001 (0.0233) |
3e-05 (0.00756) |
amp 17q25 2 | 201 (70%) | 87 |
1e-05 (0.0031) |
3e-05 (0.00756) |
0.0804 (1.00) |
0.00011 (0.0255) |
1e-05 (0.0031) |
1e-05 (0.0031) |
0.0702 (1.00) |
0.00103 (0.218) |
0.00161 (0.328) |
0.00105 (0.222) |
del 4q34 3 | 32 (11%) | 256 |
1e-05 (0.0031) |
1e-05 (0.0031) |
0.572 (1.00) |
0.00593 (1.00) |
1e-05 (0.0031) |
5e-05 (0.0121) |
0.423 (1.00) |
0.367 (1.00) |
0.00893 (1.00) |
3e-05 (0.00756) |
del xp11 4 | 34 (12%) | 254 |
1e-05 (0.0031) |
1e-05 (0.0031) |
0.373 (1.00) |
0.00274 (0.535) |
1e-05 (0.0031) |
2e-05 (0.00508) |
0.704 (1.00) |
0.264 (1.00) |
0.00138 (0.286) |
0.0004 (0.0884) |
amp 3q27 1 | 100 (35%) | 188 |
1e-05 (0.0031) |
0.0576 (1.00) |
0.256 (1.00) |
0.0117 (1.00) |
1e-05 (0.0031) |
0.00085 (0.184) |
0.0336 (1.00) |
0.00019 (0.0431) |
0.761 (1.00) |
0.0174 (1.00) |
amp 5q35 2 | 37 (13%) | 251 |
1e-05 (0.0031) |
0.00016 (0.0365) |
0.256 (1.00) |
0.321 (1.00) |
0.00065 (0.142) |
8e-05 (0.0188) |
0.051 (1.00) |
0.00537 (0.967) |
0.41 (1.00) |
0.0548 (1.00) |
del 1p36 31 | 55 (19%) | 233 |
1e-05 (0.0031) |
6e-05 (0.0144) |
0.662 (1.00) |
0.0521 (1.00) |
1e-05 (0.0031) |
1e-05 (0.0031) |
0.771 (1.00) |
0.855 (1.00) |
0.0244 (1.00) |
0.00554 (0.988) |
del 3p22 1 | 25 (9%) | 263 |
1e-05 (0.0031) |
1e-05 (0.0031) |
0.472 (1.00) |
0.00168 (0.339) |
1e-05 (0.0031) |
1e-05 (0.0031) |
0.202 (1.00) |
0.00572 (1.00) |
0.0256 (1.00) |
0.00446 (0.834) |
del 5q35 2 | 11 (4%) | 277 |
0.028 (1.00) |
4e-05 (0.00984) |
0.414 (1.00) |
0.00632 (1.00) |
6e-05 (0.0144) |
6e-05 (0.0144) |
0.00712 (1.00) |
0.00301 (0.581) |
0.00166 (0.337) |
1e-05 (0.0031) |
del 6q25 3 | 32 (11%) | 256 |
1e-05 (0.0031) |
0.00044 (0.0968) |
0.857 (1.00) |
0.104 (1.00) |
1e-05 (0.0031) |
6e-05 (0.0144) |
0.342 (1.00) |
0.743 (1.00) |
0.0414 (1.00) |
0.0653 (1.00) |
del 10q21 1 | 19 (7%) | 269 |
1e-05 (0.0031) |
4e-05 (0.00984) |
0.332 (1.00) |
0.00408 (0.767) |
8e-05 (0.0188) |
0.00078 (0.169) |
0.636 (1.00) |
0.975 (1.00) |
0.0374 (1.00) |
0.00616 (1.00) |
del 11q23 3 | 29 (10%) | 259 |
1e-05 (0.0031) |
0.00015 (0.0345) |
0.418 (1.00) |
0.192 (1.00) |
6e-05 (0.0144) |
0.00028 (0.0627) |
0.323 (1.00) |
0.333 (1.00) |
0.00598 (1.00) |
0.00513 (0.939) |
del 15q13 3 | 35 (12%) | 253 |
1e-05 (0.0031) |
4e-05 (0.00984) |
0.135 (1.00) |
0.00947 (1.00) |
1e-05 (0.0031) |
1e-05 (0.0031) |
0.0766 (1.00) |
0.601 (1.00) |
0.0409 (1.00) |
0.0033 (0.634) |
del 22q12 2 | 63 (22%) | 225 |
1e-05 (0.0031) |
1e-05 (0.0031) |
0.742 (1.00) |
0.00595 (1.00) |
1e-05 (0.0031) |
1e-05 (0.0031) |
1 (1.00) |
0.4 (1.00) |
0.0379 (1.00) |
0.00525 (0.95) |
amp 19p13 2 | 31 (11%) | 257 |
1e-05 (0.0031) |
0.00816 (1.00) |
0.00467 (0.864) |
0.00448 (0.834) |
0.0009 (0.193) |
0.00096 (0.204) |
0.122 (1.00) |
0.564 (1.00) |
0.0612 (1.00) |
0.0078 (1.00) |
del 6q22 31 | 29 (10%) | 259 |
1e-05 (0.0031) |
0.00755 (1.00) |
0.96 (1.00) |
0.0379 (1.00) |
2e-05 (0.00508) |
3e-05 (0.00756) |
0.418 (1.00) |
0.266 (1.00) |
0.0138 (1.00) |
0.0376 (1.00) |
del 11q22 3 | 31 (11%) | 257 |
1e-05 (0.0031) |
0.00144 (0.297) |
0.738 (1.00) |
0.234 (1.00) |
0.00015 (0.0345) |
0.0002 (0.0452) |
0.239 (1.00) |
0.191 (1.00) |
0.00281 (0.545) |
0.0024 (0.475) |
del 14q11 2 | 51 (18%) | 237 |
1e-05 (0.0031) |
0.0141 (1.00) |
0.0777 (1.00) |
0.00398 (0.752) |
1e-05 (0.0031) |
1e-05 (0.0031) |
0.523 (1.00) |
0.561 (1.00) |
0.0238 (1.00) |
0.0286 (1.00) |
del 14q24 2 | 50 (17%) | 238 |
1e-05 (0.0031) |
0.00134 (0.279) |
0.0384 (1.00) |
0.00266 (0.524) |
1e-05 (0.0031) |
1e-05 (0.0031) |
0.54 (1.00) |
0.573 (1.00) |
0.00657 (1.00) |
0.0081 (1.00) |
del 16q24 1 | 12 (4%) | 276 |
0.00026 (0.0585) |
4e-05 (0.00984) |
0.307 (1.00) |
0.548 (1.00) |
0.00089 (0.191) |
0.0183 (1.00) |
1 (1.00) |
0.054 (1.00) |
0.0103 (1.00) |
0.0499 (1.00) |
del xq28 | 28 (10%) | 260 |
1e-05 (0.0031) |
0.00012 (0.0277) |
0.903 (1.00) |
0.078 (1.00) |
1e-05 (0.0031) |
0.0017 (0.342) |
0.75 (1.00) |
0.794 (1.00) |
0.00725 (1.00) |
0.00509 (0.937) |
amp 2p23 2 | 45 (16%) | 243 |
1e-05 (0.0031) |
0.0109 (1.00) |
0.804 (1.00) |
0.051 (1.00) |
0.66 (1.00) |
0.0655 (1.00) |
0.152 (1.00) |
0.062 (1.00) |
0.437 (1.00) |
0.079 (1.00) |
amp 2q32 1 | 53 (18%) | 235 |
1e-05 (0.0031) |
0.0645 (1.00) |
0.811 (1.00) |
0.0839 (1.00) |
0.435 (1.00) |
0.029 (1.00) |
0.302 (1.00) |
0.127 (1.00) |
0.975 (1.00) |
0.511 (1.00) |
del 2q22 1 | 10 (3%) | 278 |
0.0033 (0.634) |
0.00552 (0.988) |
0.541 (1.00) |
0.313 (1.00) |
0.00031 (0.0691) |
0.0518 (1.00) |
0.671 (1.00) |
0.808 (1.00) |
0.178 (1.00) |
0.426 (1.00) |
del 6p12 3 | 26 (9%) | 262 |
1e-05 (0.0031) |
0.00905 (1.00) |
1 (1.00) |
0.631 (1.00) |
0.00133 (0.278) |
0.00124 (0.26) |
0.131 (1.00) |
0.506 (1.00) |
0.264 (1.00) |
0.22 (1.00) |
del 19p13 3 | 23 (8%) | 265 |
1e-05 (0.0031) |
0.0449 (1.00) |
0.779 (1.00) |
0.294 (1.00) |
0.0376 (1.00) |
0.00519 (0.945) |
0.238 (1.00) |
0.313 (1.00) |
0.0873 (1.00) |
0.0363 (1.00) |
del 19q13 42 | 19 (7%) | 269 |
3e-05 (0.00756) |
0.0453 (1.00) |
0.888 (1.00) |
0.134 (1.00) |
0.01 (1.00) |
0.00273 (0.535) |
0.398 (1.00) |
0.304 (1.00) |
0.229 (1.00) |
0.346 (1.00) |
del 2p12 | 8 (3%) | 280 |
0.0844 (1.00) |
0.122 (1.00) |
0.129 (1.00) |
0.103 (1.00) |
0.25 (1.00) |
0.238 (1.00) |
0.176 (1.00) |
0.283 (1.00) |
0.694 (1.00) |
1 (1.00) |
del 2q37 3 | 12 (4%) | 276 |
0.0947 (1.00) |
0.00188 (0.376) |
0.00727 (1.00) |
0.0478 (1.00) |
0.00706 (1.00) |
0.0214 (1.00) |
0.144 (1.00) |
0.151 (1.00) |
0.0455 (1.00) |
0.235 (1.00) |
del 5p15 33 | 13 (5%) | 275 |
0.26 (1.00) |
0.00233 (0.464) |
0.854 (1.00) |
0.0138 (1.00) |
0.0198 (1.00) |
0.00352 (0.669) |
0.559 (1.00) |
0.203 (1.00) |
0.332 (1.00) |
0.00159 (0.326) |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
AMP PEAK 1(2P23.2) MUTATED | 2 | 3 | 14 | 26 |
AMP PEAK 1(2P23.2) WILD-TYPE | 112 | 73 | 32 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
AMP PEAK 2(2Q32.1) MUTATED | 4 | 4 | 15 | 30 |
AMP PEAK 2(2Q32.1) WILD-TYPE | 110 | 72 | 31 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
AMP PEAK 3(3Q27.1) MUTATED | 20 | 17 | 45 | 18 |
AMP PEAK 3(3Q27.1) WILD-TYPE | 94 | 59 | 1 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
AMP PEAK 3(3Q27.1) MUTATED | 39 | 48 | 13 |
AMP PEAK 3(3Q27.1) WILD-TYPE | 39 | 66 | 82 |
P value = 0.00085 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
AMP PEAK 3(3Q27.1) MUTATED | 39 | 39 | 12 | 10 |
AMP PEAK 3(3Q27.1) WILD-TYPE | 86 | 33 | 32 | 36 |
P value = 0.00019 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 66 | 81 | 86 |
AMP PEAK 3(3Q27.1) MUTATED | 20 | 18 | 43 | 19 |
AMP PEAK 3(3Q27.1) WILD-TYPE | 35 | 48 | 38 | 67 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
AMP PEAK 4(5Q35.2) MUTATED | 19 | 2 | 0 | 16 |
AMP PEAK 4(5Q35.2) WILD-TYPE | 95 | 74 | 46 | 36 |
P value = 0.00016 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 58 | 103 |
AMP PEAK 4(5Q35.2) MUTATED | 11 | 15 | 4 |
AMP PEAK 4(5Q35.2) WILD-TYPE | 52 | 43 | 99 |
P value = 0.00065 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
AMP PEAK 4(5Q35.2) MUTATED | 12 | 5 | 20 |
AMP PEAK 4(5Q35.2) WILD-TYPE | 66 | 109 | 75 |
P value = 8e-05 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
AMP PEAK 4(5Q35.2) MUTATED | 29 | 3 | 1 | 4 |
AMP PEAK 4(5Q35.2) WILD-TYPE | 96 | 69 | 43 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
AMP PEAK 5(7Q31.2) MUTATED | 32 | 75 | 43 | 27 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 82 | 1 | 3 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 58 | 103 |
AMP PEAK 5(7Q31.2) MUTATED | 34 | 19 | 85 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 29 | 39 | 18 |
P value = 5e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 29 | 22 | 27 | 39 | 25 | 25 |
AMP PEAK 5(7Q31.2) MUTATED | 14 | 17 | 27 | 9 | 12 | 18 | 18 | 14 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 3 | 5 | 2 | 13 | 15 | 21 | 7 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
AMP PEAK 5(7Q31.2) MUTATED | 50 | 97 | 29 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 28 | 17 | 66 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
AMP PEAK 5(7Q31.2) MUTATED | 59 | 68 | 32 | 17 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 66 | 4 | 12 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 66 | 81 | 86 |
AMP PEAK 5(7Q31.2) MUTATED | 23 | 41 | 67 | 46 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 32 | 25 | 14 | 40 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
AMP PEAK 5(7Q31.2) MUTATED | 33 | 64 | 35 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 36 | 17 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
AMP PEAK 5(7Q31.2) MUTATED | 67 | 35 | 4 | 26 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 31 | 42 | 12 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
AMP PEAK 6(17Q25.2) MUTATED | 43 | 76 | 45 | 37 |
AMP PEAK 6(17Q25.2) WILD-TYPE | 71 | 0 | 1 | 15 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 58 | 103 |
AMP PEAK 6(17Q25.2) MUTATED | 38 | 34 | 89 |
AMP PEAK 6(17Q25.2) WILD-TYPE | 25 | 24 | 14 |
P value = 0.00011 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 29 | 22 | 27 | 39 | 25 | 25 |
AMP PEAK 6(17Q25.2) MUTATED | 15 | 20 | 26 | 11 | 13 | 23 | 21 | 17 |
AMP PEAK 6(17Q25.2) WILD-TYPE | 2 | 2 | 3 | 11 | 14 | 16 | 4 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
AMP PEAK 6(17Q25.2) MUTATED | 54 | 101 | 45 |
AMP PEAK 6(17Q25.2) WILD-TYPE | 24 | 13 | 50 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
AMP PEAK 6(17Q25.2) MUTATED | 79 | 68 | 35 | 18 |
AMP PEAK 6(17Q25.2) WILD-TYPE | 46 | 4 | 9 | 28 |
P value = 0.00103 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 66 | 81 | 86 |
AMP PEAK 6(17Q25.2) MUTATED | 30 | 46 | 69 | 56 |
AMP PEAK 6(17Q25.2) WILD-TYPE | 25 | 20 | 12 | 30 |
P value = 0.00105 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
AMP PEAK 6(17Q25.2) MUTATED | 72 | 45 | 7 | 27 |
AMP PEAK 6(17Q25.2) WILD-TYPE | 26 | 32 | 9 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
AMP PEAK 7(19P13.2) MUTATED | 1 | 22 | 0 | 8 |
AMP PEAK 7(19P13.2) WILD-TYPE | 113 | 54 | 46 | 44 |
P value = 9e-04 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
AMP PEAK 7(19P13.2) MUTATED | 3 | 22 | 6 |
AMP PEAK 7(19P13.2) WILD-TYPE | 75 | 92 | 89 |
P value = 0.00096 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
AMP PEAK 7(19P13.2) MUTATED | 4 | 11 | 9 | 7 |
AMP PEAK 7(19P13.2) WILD-TYPE | 121 | 61 | 35 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 1(1P36.31) MUTATED | 21 | 0 | 2 | 32 |
DEL PEAK 1(1P36.31) WILD-TYPE | 93 | 76 | 44 | 20 |
P value = 6e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 58 | 103 |
DEL PEAK 1(1P36.31) MUTATED | 11 | 22 | 9 |
DEL PEAK 1(1P36.31) WILD-TYPE | 52 | 36 | 94 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 1(1P36.31) MUTATED | 11 | 6 | 38 |
DEL PEAK 1(1P36.31) WILD-TYPE | 67 | 108 | 57 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
DEL PEAK 1(1P36.31) MUTATED | 29 | 6 | 1 | 19 |
DEL PEAK 1(1P36.31) WILD-TYPE | 96 | 66 | 43 | 27 |
P value = 0.00031 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 3(2Q22.1) MUTATED | 1 | 0 | 9 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 77 | 114 | 86 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 5(3P22.1) MUTATED | 6 | 0 | 0 | 19 |
DEL PEAK 5(3P22.1) WILD-TYPE | 108 | 76 | 46 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 58 | 103 |
DEL PEAK 5(3P22.1) MUTATED | 3 | 14 | 1 |
DEL PEAK 5(3P22.1) WILD-TYPE | 60 | 44 | 102 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 5(3P22.1) MUTATED | 5 | 0 | 20 |
DEL PEAK 5(3P22.1) WILD-TYPE | 73 | 114 | 75 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
DEL PEAK 5(3P22.1) MUTATED | 21 | 0 | 0 | 4 |
DEL PEAK 5(3P22.1) WILD-TYPE | 104 | 72 | 44 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 6(4Q34.3) MUTATED | 8 | 1 | 1 | 22 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 106 | 75 | 45 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 58 | 103 |
DEL PEAK 6(4Q34.3) MUTATED | 4 | 20 | 2 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 59 | 38 | 101 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 6(4Q34.3) MUTATED | 4 | 2 | 26 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 74 | 112 | 69 |
P value = 5e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
DEL PEAK 6(4Q34.3) MUTATED | 18 | 1 | 1 | 12 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 107 | 71 | 43 | 34 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 6(4Q34.3) MUTATED | 7 | 11 | 8 | 0 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 91 | 66 | 8 | 30 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 58 | 103 |
DEL PEAK 8(5Q35.2) MUTATED | 1 | 9 | 0 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 62 | 49 | 103 |
P value = 6e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 8(5Q35.2) MUTATED | 1 | 0 | 10 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 77 | 114 | 85 |
P value = 6e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
DEL PEAK 8(5Q35.2) MUTATED | 3 | 0 | 0 | 8 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 122 | 72 | 44 | 38 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 8(5Q35.2) MUTATED | 1 | 1 | 8 | 0 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 97 | 76 | 8 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 9(6P12.3) MUTATED | 8 | 0 | 1 | 17 |
DEL PEAK 9(6P12.3) WILD-TYPE | 106 | 76 | 45 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 10(6Q22.31) MUTATED | 8 | 0 | 1 | 20 |
DEL PEAK 10(6Q22.31) WILD-TYPE | 106 | 76 | 45 | 32 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 10(6Q22.31) MUTATED | 5 | 3 | 21 |
DEL PEAK 10(6Q22.31) WILD-TYPE | 73 | 111 | 74 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
DEL PEAK 10(6Q22.31) MUTATED | 14 | 2 | 0 | 13 |
DEL PEAK 10(6Q22.31) WILD-TYPE | 111 | 70 | 44 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 11(6Q25.3) MUTATED | 7 | 0 | 1 | 24 |
DEL PEAK 11(6Q25.3) WILD-TYPE | 107 | 76 | 45 | 28 |
P value = 0.00044 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 58 | 103 |
DEL PEAK 11(6Q25.3) MUTATED | 5 | 14 | 4 |
DEL PEAK 11(6Q25.3) WILD-TYPE | 58 | 44 | 99 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 11(6Q25.3) MUTATED | 6 | 3 | 23 |
DEL PEAK 11(6Q25.3) WILD-TYPE | 72 | 111 | 72 |
P value = 6e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
DEL PEAK 11(6Q25.3) MUTATED | 18 | 2 | 0 | 12 |
DEL PEAK 11(6Q25.3) WILD-TYPE | 107 | 70 | 44 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 12(9P21.3) MUTATED | 11 | 2 | 1 | 26 |
DEL PEAK 12(9P21.3) WILD-TYPE | 103 | 74 | 45 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 58 | 103 |
DEL PEAK 12(9P21.3) MUTATED | 9 | 20 | 2 |
DEL PEAK 12(9P21.3) WILD-TYPE | 54 | 38 | 101 |
P value = 0.00073 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 29 | 22 | 27 | 39 | 25 | 25 |
DEL PEAK 12(9P21.3) MUTATED | 0 | 3 | 0 | 5 | 9 | 3 | 2 | 7 |
DEL PEAK 12(9P21.3) WILD-TYPE | 17 | 19 | 29 | 17 | 18 | 36 | 23 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 12(9P21.3) MUTATED | 6 | 2 | 32 |
DEL PEAK 12(9P21.3) WILD-TYPE | 72 | 112 | 63 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
DEL PEAK 12(9P21.3) MUTATED | 20 | 0 | 0 | 20 |
DEL PEAK 12(9P21.3) WILD-TYPE | 105 | 72 | 44 | 26 |
P value = 0.00038 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 103 | 96 |
DEL PEAK 12(9P21.3) MUTATED | 3 | 16 | 21 |
DEL PEAK 12(9P21.3) WILD-TYPE | 86 | 87 | 75 |
P value = 1e-04 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 12(9P21.3) MUTATED | 8 | 4 | 21 |
DEL PEAK 12(9P21.3) WILD-TYPE | 61 | 77 | 50 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 12(9P21.3) MUTATED | 7 | 19 | 7 | 0 |
DEL PEAK 12(9P21.3) WILD-TYPE | 91 | 58 | 9 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 13(10Q21.1) MUTATED | 5 | 0 | 0 | 14 |
DEL PEAK 13(10Q21.1) WILD-TYPE | 109 | 76 | 46 | 38 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 58 | 103 |
DEL PEAK 13(10Q21.1) MUTATED | 1 | 12 | 2 |
DEL PEAK 13(10Q21.1) WILD-TYPE | 62 | 46 | 101 |
P value = 8e-05 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 13(10Q21.1) MUTATED | 3 | 1 | 15 |
DEL PEAK 13(10Q21.1) WILD-TYPE | 75 | 113 | 80 |
P value = 0.00078 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
DEL PEAK 13(10Q21.1) MUTATED | 14 | 0 | 0 | 5 |
DEL PEAK 13(10Q21.1) WILD-TYPE | 111 | 72 | 44 | 41 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 14(11Q22.3) MUTATED | 8 | 4 | 1 | 18 |
DEL PEAK 14(11Q22.3) WILD-TYPE | 106 | 72 | 45 | 34 |
P value = 0.00015 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 14(11Q22.3) MUTATED | 4 | 6 | 21 |
DEL PEAK 14(11Q22.3) WILD-TYPE | 74 | 108 | 74 |
P value = 2e-04 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
DEL PEAK 14(11Q22.3) MUTATED | 18 | 0 | 4 | 9 |
DEL PEAK 14(11Q22.3) WILD-TYPE | 107 | 72 | 40 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 15(11Q23.3) MUTATED | 6 | 4 | 0 | 19 |
DEL PEAK 15(11Q23.3) WILD-TYPE | 108 | 72 | 46 | 33 |
P value = 0.00015 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 58 | 103 |
DEL PEAK 15(11Q23.3) MUTATED | 6 | 14 | 3 |
DEL PEAK 15(11Q23.3) WILD-TYPE | 57 | 44 | 100 |
P value = 6e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 15(11Q23.3) MUTATED | 3 | 5 | 21 |
DEL PEAK 15(11Q23.3) WILD-TYPE | 75 | 109 | 74 |
P value = 0.00028 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
DEL PEAK 15(11Q23.3) MUTATED | 18 | 0 | 3 | 8 |
DEL PEAK 15(11Q23.3) WILD-TYPE | 107 | 72 | 41 | 38 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 16(14Q11.2) MUTATED | 20 | 1 | 2 | 28 |
DEL PEAK 16(14Q11.2) WILD-TYPE | 94 | 75 | 44 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 16(14Q11.2) MUTATED | 13 | 6 | 32 |
DEL PEAK 16(14Q11.2) WILD-TYPE | 65 | 108 | 63 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
DEL PEAK 16(14Q11.2) MUTATED | 26 | 2 | 4 | 19 |
DEL PEAK 16(14Q11.2) WILD-TYPE | 99 | 70 | 40 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 17(14Q24.2) MUTATED | 21 | 0 | 1 | 28 |
DEL PEAK 17(14Q24.2) WILD-TYPE | 93 | 76 | 45 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 17(14Q24.2) MUTATED | 11 | 5 | 34 |
DEL PEAK 17(14Q24.2) WILD-TYPE | 67 | 109 | 61 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
DEL PEAK 17(14Q24.2) MUTATED | 26 | 2 | 3 | 19 |
DEL PEAK 17(14Q24.2) WILD-TYPE | 99 | 70 | 41 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 18(15Q13.3) MUTATED | 12 | 0 | 3 | 20 |
DEL PEAK 18(15Q13.3) WILD-TYPE | 102 | 76 | 43 | 32 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 58 | 103 |
DEL PEAK 18(15Q13.3) MUTATED | 10 | 15 | 3 |
DEL PEAK 18(15Q13.3) WILD-TYPE | 53 | 43 | 100 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 18(15Q13.3) MUTATED | 7 | 3 | 25 |
DEL PEAK 18(15Q13.3) WILD-TYPE | 71 | 111 | 70 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
DEL PEAK 18(15Q13.3) MUTATED | 17 | 2 | 1 | 15 |
DEL PEAK 18(15Q13.3) WILD-TYPE | 108 | 70 | 43 | 31 |
P value = 0.00026 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 19(16Q24.1) MUTATED | 4 | 0 | 0 | 8 |
DEL PEAK 19(16Q24.1) WILD-TYPE | 110 | 76 | 46 | 44 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 58 | 103 |
DEL PEAK 19(16Q24.1) MUTATED | 1 | 9 | 0 |
DEL PEAK 19(16Q24.1) WILD-TYPE | 62 | 49 | 103 |
P value = 0.00089 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 19(16Q24.1) MUTATED | 3 | 0 | 9 |
DEL PEAK 19(16Q24.1) WILD-TYPE | 75 | 114 | 86 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 20(19P13.3) MUTATED | 4 | 4 | 1 | 14 |
DEL PEAK 20(19P13.3) WILD-TYPE | 110 | 72 | 45 | 38 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 21(19Q13.42) MUTATED | 2 | 3 | 2 | 12 |
DEL PEAK 21(19Q13.42) WILD-TYPE | 112 | 73 | 44 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 22(22Q12.2) MUTATED | 23 | 6 | 2 | 32 |
DEL PEAK 22(22Q12.2) WILD-TYPE | 91 | 70 | 44 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 58 | 103 |
DEL PEAK 22(22Q12.2) MUTATED | 9 | 32 | 11 |
DEL PEAK 22(22Q12.2) WILD-TYPE | 54 | 26 | 92 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 22(22Q12.2) MUTATED | 15 | 8 | 40 |
DEL PEAK 22(22Q12.2) WILD-TYPE | 63 | 106 | 55 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
DEL PEAK 22(22Q12.2) MUTATED | 37 | 6 | 2 | 18 |
DEL PEAK 22(22Q12.2) WILD-TYPE | 88 | 66 | 42 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 23(XP11.4) MUTATED | 12 | 1 | 1 | 20 |
DEL PEAK 23(XP11.4) WILD-TYPE | 102 | 75 | 45 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 58 | 103 |
DEL PEAK 23(XP11.4) MUTATED | 4 | 18 | 2 |
DEL PEAK 23(XP11.4) WILD-TYPE | 59 | 40 | 101 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 23(XP11.4) MUTATED | 5 | 3 | 26 |
DEL PEAK 23(XP11.4) WILD-TYPE | 73 | 111 | 69 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 125 | 72 | 44 | 46 |
DEL PEAK 23(XP11.4) MUTATED | 19 | 1 | 2 | 12 |
DEL PEAK 23(XP11.4) WILD-TYPE | 106 | 71 | 42 | 34 |
P value = 4e-04 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 23(XP11.4) MUTATED | 5 | 16 | 4 | 0 |
DEL PEAK 23(XP11.4) WILD-TYPE | 93 | 61 | 12 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 24(XQ28) MUTATED | 10 | 0 | 1 | 17 |
DEL PEAK 24(XQ28) WILD-TYPE | 104 | 76 | 45 | 35 |
P value = 0.00012 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 58 | 103 |
DEL PEAK 24(XQ28) MUTATED | 3 | 13 | 3 |
DEL PEAK 24(XQ28) WILD-TYPE | 60 | 45 | 100 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 78 | 114 | 95 |
DEL PEAK 24(XQ28) MUTATED | 4 | 3 | 21 |
DEL PEAK 24(XQ28) WILD-TYPE | 74 | 111 | 74 |
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Copy number data file = transformed.cor.cli.txt
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Molecular subtype file = KIRP-TP.transferedmergedcluster.txt
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Number of patients = 288
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Number of significantly focal cnvs = 31
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Number of molecular subtypes = 10
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Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.