Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p33	7 (4%)	184	0.00049	0.048	0.01157	0.767	0.12491	1	0.13002	1	0.0095099	0.656	0.04923	1
amp_1q43	7 (4%)	184	0.00338	0.267	0.01245	0.808	0.37677	1	0.03637	1	0.13665	1	0.01499	0.944
amp_11q23.3	17 (9%)	174	9.9999e-06	0.00116	2e-05	0.00216	0.37291	1	0.20053	1	0.74645	1	0.18665	1
amp_13q31.3	7 (4%)	184	0.080669	1	0.01243	0.808	0.067039	1	0.03645	1	0.73668	1	0.056629	1
amp_19p13.2	6 (3%)	185	0.0029	0.235	0.55499	1	0.85748	1	0.63153	1	0.89461	1	1	1
amp_20q11.21	3 (2%)	188	0.0061799	0.454	0.26663	1	NA	NA	NA	NA	NA	NA	NA	NA
amp_21q22.2	14 (7%)	177	9.9999e-06	0.00116	0.00214	0.175	0.00327	0.262	0.03611	1	0.00167	0.14	0.067349	1
del_3p13	8 (4%)	183	0.00071999	0.0677	0.29723	1	0.067599	1	0.23608	1	0.03651	1	0.04779	1
del_5q31.2	18 (9%)	173	9.9999e-06	0.00116	8.9999e-05	0.00909	0.0053399	0.406	0.00083999	0.0764	0.00076999	0.0716	0.0013	0.112
del_7p12.1	16 (8%)	175	0.00019	0.019	0.00061999	0.0589	0.00186	0.154	5e-05	0.0052	0.0061399	0.454	0.0063899	0.46
del_7q34	24 (13%)	167	9.9999e-06	0.00116	5.9999e-05	0.00618	0.02153	1	9.9999e-06	0.00116	0.00079999	0.0736	0.00054999	0.0533
del_7q34	24 (13%)	167	9.9999e-06	0.00116	5.9999e-05	0.00618	0.02162	1	2e-05	0.00216	0.00091999	0.0819	0.00055999	0.0538
del_9q21.32	5 (3%)	186	0.23642	1	0.51569	1	0.17624	1	0.60239	1	0.18163	1	0.10505	1
del_12p13.2	10 (5%)	181	2e-05	0.00216	0.0051899	0.4	0.199	1	0.072349	1	0.069719	1	0.0095899	0.656
del_12q21.33	3 (2%)	188	0.00135	0.115	0.30359	1	0.18709	1	0.58678	1	0.0084299	0.59	0.0059999	0.45
del_16q23.1	9 (5%)	182	0.00121	0.105	0.14885	1	0.32961	1	0.4939	1	0.04301	1	0.065749	1
del_17p13.2	15 (8%)	176	9.9999e-06	0.00116	0.00084999	0.0765	0.01145	0.767	2e-04	0.0198	0.086549	1	0.00116	0.102
del_17q11.2	13 (7%)	178	9.9999e-06	0.00116	0.02238	1	0.15556	1	0.0066099	0.469	0.13645	1	0.0035	0.273
del_18p11.21	9 (5%)	182	2e-05	0.00216	0.01782	1	0.38178	1	0.33539	1	0.21286	1	0.0311	1
del_20q13.13	4 (2%)	187	0.02876	1	0.14786	1	0.78651	1	0.58849	1	0.12592	1	0.41068	1