This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 79 arm-level events and 12 molecular subtypes across 513 patients, 164 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1q gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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5p gain cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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5q gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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7p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8p gain cnv correlated to 'CN_CNMF'.
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8q gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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10p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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12p gain cnv correlated to 'CN_CNMF'.
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18p gain cnv correlated to 'CN_CNMF'.
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18q gain cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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19p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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19q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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22q gain cnv correlated to 'METHLYATION_CNMF'.
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xq gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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1p loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2p loss cnv correlated to 'CN_CNMF'.
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4p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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5q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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6q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9p loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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10p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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11q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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12q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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13q loss cnv correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.
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14q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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18q loss cnv correlated to 'METHLYATION_CNMF'.
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19q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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21q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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22q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq loss cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
1p loss | 184 (36%) | 329 |
0.0295 (1.00) |
0.00019 (0.131) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.00027 (0.183) |
0.458 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
1e-05 (0.00836) |
1e-05 (0.00836) |
1e-05 (0.00836) |
1e-05 (0.00836) |
10p loss | 83 (16%) | 430 |
0.269 (1.00) |
0.881 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.00111 (0.712) |
1e-05 (0.00836) |
1e-05 (0.00836) |
2e-05 (0.0147) |
1e-05 (0.00836) |
1e-05 (0.00836) |
1e-05 (0.00836) |
10q loss | 96 (19%) | 417 |
0.273 (1.00) |
0.883 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.00042 (0.281) |
1e-05 (0.00836) |
1e-05 (0.00836) |
1e-05 (0.00836) |
1e-05 (0.00836) |
1e-05 (0.00836) |
1e-05 (0.00836) |
19q loss | 209 (41%) | 304 |
0.186 (1.00) |
0.0126 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.0384 (1.00) |
0.335 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
1e-05 (0.00836) |
1e-05 (0.00836) |
1e-05 (0.00836) |
1e-05 (0.00836) |
19q gain | 25 (5%) | 488 |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.0566 (1.00) |
0.399 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.00243 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
1e-05 (0.00836) |
||
20q gain | 43 (8%) | 470 |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.00073 (0.477) |
0.144 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.0491 (1.00) |
1e-05 (0.00836) |
4e-05 (0.029) |
1e-05 (0.00836) |
||
4p loss | 71 (14%) | 442 |
1 (1.00) |
0.783 (1.00) |
0.0033 (1.00) |
1e-05 (0.00836) |
0.351 (1.00) |
1 (1.00) |
4e-05 (0.029) |
1e-05 (0.00836) |
5e-05 (0.0359) |
0.00034 (0.229) |
4e-05 (0.029) |
1e-05 (0.00836) |
22q loss | 57 (11%) | 456 |
0.818 (1.00) |
0.00687 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
4e-05 (0.029) |
0.0402 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.453 (1.00) |
0.00033 (0.222) |
0.0116 (1.00) |
0.00015 (0.104) |
1p gain | 13 (3%) | 500 |
6e-05 (0.0427) |
0.00016 (0.111) |
0.0242 (1.00) |
1 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.00558 (1.00) |
2e-05 (0.0147) |
0.0123 (1.00) |
0.00014 (0.0974) |
||
7p gain | 121 (24%) | 392 |
0.745 (1.00) |
0.781 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.00044 (0.293) |
0.0116 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.00263 (1.00) |
1e-05 (0.00836) |
0.00039 (0.262) |
1e-05 (0.00836) |
7q gain | 151 (29%) | 362 |
0.762 (1.00) |
0.52 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.00403 (1.00) |
0.2 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.00328 (1.00) |
1e-05 (0.00836) |
0.00079 (0.516) |
1e-05 (0.00836) |
20p gain | 43 (8%) | 470 |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.00067 (0.441) |
0.175 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.16 (1.00) |
1e-05 (0.00836) |
0.00095 (0.617) |
1e-05 (0.00836) |
||
11p loss | 63 (12%) | 450 |
1 (1.00) |
0.0315 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.0122 (1.00) |
0.726 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
2e-05 (0.0147) |
5e-05 (0.0359) |
0.434 (1.00) |
0.0165 (1.00) |
19p gain | 100 (19%) | 413 |
0.22 (1.00) |
1 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.677 (1.00) |
0.424 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.00018 (0.124) |
0.0385 (1.00) |
0.235 (1.00) |
0.00254 (1.00) |
4q loss | 92 (18%) | 421 |
1 (1.00) |
0.404 (1.00) |
0.0066 (1.00) |
1e-05 (0.00836) |
0.258 (1.00) |
0.931 (1.00) |
0.00071 (0.465) |
1e-05 (0.00836) |
0.00021 (0.144) |
0.00148 (0.937) |
2e-05 (0.0147) |
2e-05 (0.0147) |
8p loss | 17 (3%) | 496 |
0.616 (1.00) |
0.0426 (1.00) |
2e-05 (0.0147) |
5e-05 (0.0359) |
0.019 (1.00) |
0.152 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.117 (1.00) |
0.00145 (0.919) |
0.816 (1.00) |
0.00027 (0.183) |
8q loss | 11 (2%) | 502 |
0.0002 (0.137) |
2e-05 (0.0147) |
0.0823 (1.00) |
0.364 (1.00) |
8e-05 (0.0566) |
7e-05 (0.0497) |
0.0524 (1.00) |
0.00068 (0.447) |
0.373 (1.00) |
9e-05 (0.0634) |
||
11q loss | 21 (4%) | 492 |
0.00017 (0.118) |
7e-05 (0.0497) |
0.0175 (1.00) |
0.652 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.0248 (1.00) |
7e-05 (0.0497) |
0.492 (1.00) |
0.0004 (0.268) |
||
10p gain | 57 (11%) | 456 |
1 (1.00) |
0.0418 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.0211 (1.00) |
0.553 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.0543 (1.00) |
0.295 (1.00) |
0.474 (1.00) |
0.00565 (1.00) |
xq gain | 41 (8%) | 472 |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.236 (1.00) |
0.714 (1.00) |
0.0001 (0.07) |
1e-05 (0.00836) |
0.0177 (1.00) |
0.559 (1.00) |
0.67 (1.00) |
0.0134 (1.00) |
||
5q gain | 8 (2%) | 505 |
0.00469 (1.00) |
0.00025 (0.17) |
0.00022 (0.15) |
0.00018 (0.124) |
0.0125 (1.00) |
0.00098 (0.634) |
0.00855 (1.00) |
0.00059 (0.389) |
||||
5q loss | 33 (6%) | 480 |
0.447 (1.00) |
0.239 (1.00) |
1e-05 (0.00836) |
0.00017 (0.118) |
0.0193 (1.00) |
0.119 (1.00) |
0.0272 (1.00) |
0.00649 (1.00) |
9e-05 (0.0634) |
0.162 (1.00) |
0.811 (1.00) |
0.61 (1.00) |
14q loss | 80 (16%) | 433 |
0.466 (1.00) |
0.266 (1.00) |
0.00104 (0.669) |
0.00016 (0.111) |
0.0441 (1.00) |
0.115 (1.00) |
2e-05 (0.0147) |
3e-05 (0.0218) |
0.0103 (1.00) |
0.00083 (0.541) |
0.0114 (1.00) |
0.00055 (0.364) |
xq loss | 69 (13%) | 444 |
0.837 (1.00) |
0.266 (1.00) |
0.254 (1.00) |
0.0121 (1.00) |
0.0448 (1.00) |
0.0209 (1.00) |
5e-05 (0.0359) |
1e-05 (0.00836) |
8e-05 (0.0566) |
0.15 (1.00) |
0.0314 (1.00) |
0.00825 (1.00) |
1q gain | 23 (4%) | 490 |
0.00023 (0.157) |
0.00057 (0.377) |
0.434 (1.00) |
0.607 (1.00) |
6e-05 (0.0427) |
0.00045 (0.3) |
0.122 (1.00) |
0.0316 (1.00) |
0.0308 (1.00) |
0.0568 (1.00) |
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5p gain | 11 (2%) | 502 |
0.00644 (1.00) |
0.00292 (1.00) |
0.0214 (1.00) |
0.609 (1.00) |
4e-05 (0.029) |
0.0001 (0.07) |
0.0238 (1.00) |
0.0268 (1.00) |
0.142 (1.00) |
0.0159 (1.00) |
||
8q gain | 56 (11%) | 457 |
0.0515 (1.00) |
0.405 (1.00) |
1e-05 (0.00836) |
5e-05 (0.0359) |
0.0114 (1.00) |
0.0558 (1.00) |
0.00153 (0.967) |
0.00049 (0.325) |
0.191 (1.00) |
0.12 (1.00) |
0.0677 (1.00) |
0.0154 (1.00) |
5p loss | 34 (7%) | 479 |
0.745 (1.00) |
0.0663 (1.00) |
1e-05 (0.00836) |
0.0001 (0.07) |
0.915 (1.00) |
0.954 (1.00) |
0.173 (1.00) |
0.0435 (1.00) |
0.105 (1.00) |
0.392 (1.00) |
0.733 (1.00) |
0.325 (1.00) |
6q loss | 63 (12%) | 450 |
8e-05 (0.0566) |
0.00134 (0.854) |
0.251 (1.00) |
0.568 (1.00) |
0.0765 (1.00) |
0.0192 (1.00) |
0.00122 (0.781) |
0.173 (1.00) |
0.0137 (1.00) |
4e-05 (0.029) |
||
9p loss | 118 (23%) | 395 |
0.382 (1.00) |
0.266 (1.00) |
1e-05 (0.00836) |
0.0003 (0.203) |
0.0319 (1.00) |
0.0198 (1.00) |
0.0948 (1.00) |
0.051 (1.00) |
0.894 (1.00) |
0.221 (1.00) |
0.285 (1.00) |
0.0346 (1.00) |
12q loss | 51 (10%) | 462 |
1 (1.00) |
0.579 (1.00) |
1e-05 (0.00836) |
1e-05 (0.00836) |
0.681 (1.00) |
0.11 (1.00) |
0.00707 (1.00) |
0.00288 (1.00) |
0.00583 (1.00) |
0.332 (1.00) |
0.834 (1.00) |
0.809 (1.00) |
13q loss | 116 (23%) | 397 |
0.179 (1.00) |
9e-05 (0.0634) |
5e-05 (0.0359) |
0.00589 (1.00) |
0.0262 (1.00) |
0.622 (1.00) |
0.0159 (1.00) |
0.00516 (1.00) |
0.0348 (1.00) |
0.0132 (1.00) |
0.297 (1.00) |
0.24 (1.00) |
21q loss | 36 (7%) | 477 |
0.612 (1.00) |
0.0426 (1.00) |
1e-05 (0.00836) |
0.00021 (0.144) |
0.464 (1.00) |
0.654 (1.00) |
0.00088 (0.573) |
0.00046 (0.306) |
0.249 (1.00) |
0.0264 (1.00) |
0.507 (1.00) |
0.288 (1.00) |
8p gain | 46 (9%) | 467 |
9e-05 (0.0634) |
0.00133 (0.849) |
0.0638 (1.00) |
0.16 (1.00) |
0.0223 (1.00) |
0.00569 (1.00) |
0.391 (1.00) |
0.413 (1.00) |
0.207 (1.00) |
0.071 (1.00) |
||
12p gain | 33 (6%) | 480 |
0.754 (1.00) |
0.58 (1.00) |
0.00029 (0.196) |
0.0329 (1.00) |
0.259 (1.00) |
0.309 (1.00) |
0.0421 (1.00) |
0.0875 (1.00) |
0.0873 (1.00) |
0.0215 (1.00) |
0.191 (1.00) |
0.559 (1.00) |
18p gain | 17 (3%) | 496 |
0.00013 (0.0906) |
0.00483 (1.00) |
0.0232 (1.00) |
0.441 (1.00) |
0.0309 (1.00) |
0.0116 (1.00) |
0.839 (1.00) |
0.0926 (1.00) |
0.612 (1.00) |
0.0372 (1.00) |
||
18q gain | 13 (3%) | 500 |
0.00098 (0.634) |
0.00355 (1.00) |
0.081 (1.00) |
0.599 (1.00) |
0.00162 (1.00) |
0.00023 (0.157) |
0.509 (1.00) |
0.0172 (1.00) |
0.182 (1.00) |
0.00453 (1.00) |
||
22q gain | 23 (4%) | 490 |
0.012 (1.00) |
4e-05 (0.029) |
1 (1.00) |
0.686 (1.00) |
0.00106 (0.681) |
0.00038 (0.255) |
0.119 (1.00) |
0.527 (1.00) |
0.0417 (1.00) |
0.224 (1.00) |
||
2p loss | 21 (4%) | 492 |
0.00024 (0.163) |
0.0416 (1.00) |
0.333 (1.00) |
1 (1.00) |
0.161 (1.00) |
0.0303 (1.00) |
0.0727 (1.00) |
0.405 (1.00) |
0.729 (1.00) |
0.259 (1.00) |
||
18q loss | 62 (12%) | 451 |
0.343 (1.00) |
0.152 (1.00) |
0.0463 (1.00) |
0.00031 (0.209) |
0.288 (1.00) |
0.0978 (1.00) |
0.0309 (1.00) |
0.00337 (1.00) |
0.0581 (1.00) |
0.712 (1.00) |
0.423 (1.00) |
0.53 (1.00) |
2p gain | 14 (3%) | 499 |
0.0168 (1.00) |
0.015 (1.00) |
0.309 (1.00) |
0.345 (1.00) |
0.0124 (1.00) |
0.00103 (0.664) |
0.603 (1.00) |
0.0212 (1.00) |
0.89 (1.00) |
0.0399 (1.00) |
||
2q gain | 13 (3%) | 500 |
0.0381 (1.00) |
0.0103 (1.00) |
0.308 (1.00) |
0.343 (1.00) |
0.0349 (1.00) |
0.00069 (0.453) |
0.512 (1.00) |
0.0177 (1.00) |
0.684 (1.00) |
0.0457 (1.00) |
||
3p gain | 11 (2%) | 502 |
0.0647 (1.00) |
0.327 (1.00) |
0.463 (1.00) |
0.203 (1.00) |
0.108 (1.00) |
0.109 (1.00) |
0.119 (1.00) |
0.288 (1.00) |
0.743 (1.00) |
0.199 (1.00) |
||
3q gain | 8 (2%) | 505 |
0.00191 (1.00) |
0.1 (1.00) |
0.0564 (1.00) |
0.366 (1.00) |
0.0628 (1.00) |
0.00369 (1.00) |
0.342 (1.00) |
0.133 (1.00) |
0.33 (1.00) |
0.15 (1.00) |
||
4p gain | 13 (3%) | 500 |
0.00061 (0.402) |
0.00706 (1.00) |
0.0324 (1.00) |
0.895 (1.00) |
0.00844 (1.00) |
0.00177 (1.00) |
0.191 (1.00) |
0.106 (1.00) |
0.337 (1.00) |
0.275 (1.00) |
||
4q gain | 6 (1%) | 507 |
0.0391 (1.00) |
0.0176 (1.00) |
0.112 (1.00) |
0.67 (1.00) |
0.0142 (1.00) |
0.00355 (1.00) |
0.261 (1.00) |
0.15 (1.00) |
0.382 (1.00) |
0.222 (1.00) |
||
6p gain | 7 (1%) | 506 |
0.225 (1.00) |
0.0466 (1.00) |
0.0377 (1.00) |
0.518 (1.00) |
0.434 (1.00) |
0.0979 (1.00) |
0.0234 (1.00) |
0.0637 (1.00) |
0.572 (1.00) |
0.033 (1.00) |
||
9p gain | 17 (3%) | 496 |
0.0156 (1.00) |
0.149 (1.00) |
0.292 (1.00) |
0.531 (1.00) |
0.0648 (1.00) |
0.0365 (1.00) |
0.839 (1.00) |
0.0261 (1.00) |
0.861 (1.00) |
0.204 (1.00) |
||
9q gain | 24 (5%) | 489 |
0.0123 (1.00) |
0.105 (1.00) |
0.258 (1.00) |
0.0543 (1.00) |
0.0399 (1.00) |
0.0136 (1.00) |
0.43 (1.00) |
0.0104 (1.00) |
0.584 (1.00) |
0.173 (1.00) |
||
10q gain | 12 (2%) | 501 |
0.00132 (0.843) |
0.0203 (1.00) |
0.267 (1.00) |
0.515 (1.00) |
0.0854 (1.00) |
0.0362 (1.00) |
0.0779 (1.00) |
0.0303 (1.00) |
0.58 (1.00) |
0.208 (1.00) |
||
11p gain | 31 (6%) | 482 |
0.0326 (1.00) |
0.00089 (0.578) |
0.0259 (1.00) |
0.11 (1.00) |
0.00933 (1.00) |
0.00318 (1.00) |
0.0937 (1.00) |
0.0245 (1.00) |
0.407 (1.00) |
0.0082 (1.00) |
||
11q gain | 58 (11%) | 455 |
0.616 (1.00) |
0.582 (1.00) |
0.178 (1.00) |
0.0106 (1.00) |
0.0817 (1.00) |
0.0307 (1.00) |
0.0623 (1.00) |
0.0366 (1.00) |
0.546 (1.00) |
0.0464 (1.00) |
0.648 (1.00) |
0.0319 (1.00) |
12q gain | 16 (3%) | 497 |
0.00546 (1.00) |
0.102 (1.00) |
0.294 (1.00) |
0.532 (1.00) |
0.00549 (1.00) |
0.0851 (1.00) |
0.165 (1.00) |
0.0592 (1.00) |
0.119 (1.00) |
0.091 (1.00) |
||
13q gain | 6 (1%) | 507 |
0.382 (1.00) |
0.397 (1.00) |
0.794 (1.00) |
0.795 (1.00) |
0.234 (1.00) |
0.474 (1.00) |
0.352 (1.00) |
0.588 (1.00) |
0.454 (1.00) |
0.469 (1.00) |
||
14q gain | 4 (1%) | 509 |
0.826 (1.00) |
0.758 (1.00) |
0.71 (1.00) |
0.59 (1.00) |
0.217 (1.00) |
0.68 (1.00) |
0.27 (1.00) |
0.759 (1.00) |
||||
15q gain | 11 (2%) | 502 |
0.00221 (1.00) |
0.0203 (1.00) |
0.0449 (1.00) |
0.217 (1.00) |
0.0478 (1.00) |
0.0134 (1.00) |
0.176 (1.00) |
0.288 (1.00) |
0.475 (1.00) |
0.0964 (1.00) |
||
16p gain | 17 (3%) | 496 |
0.488 (1.00) |
0.745 (1.00) |
0.56 (1.00) |
0.698 (1.00) |
0.0749 (1.00) |
0.0479 (1.00) |
0.12 (1.00) |
0.0592 (1.00) |
0.11 (1.00) |
0.515 (1.00) |
||
16q gain | 19 (4%) | 494 |
0.268 (1.00) |
0.315 (1.00) |
0.47 (1.00) |
0.513 (1.00) |
0.152 (1.00) |
0.034 (1.00) |
0.0548 (1.00) |
0.0999 (1.00) |
0.139 (1.00) |
0.53 (1.00) |
||
17p gain | 20 (4%) | 493 |
0.489 (1.00) |
0.596 (1.00) |
0.348 (1.00) |
0.888 (1.00) |
0.186 (1.00) |
0.0455 (1.00) |
0.189 (1.00) |
0.485 (1.00) |
0.687 (1.00) |
0.654 (1.00) |
||
17q gain | 23 (4%) | 490 |
0.682 (1.00) |
0.449 (1.00) |
0.347 (1.00) |
0.885 (1.00) |
0.349 (1.00) |
0.121 (1.00) |
0.109 (1.00) |
0.7 (1.00) |
0.425 (1.00) |
0.358 (1.00) |
||
21q gain | 24 (5%) | 489 |
0.00596 (1.00) |
0.0119 (1.00) |
0.11 (1.00) |
0.395 (1.00) |
0.428 (1.00) |
0.211 (1.00) |
0.623 (1.00) |
0.0983 (1.00) |
0.728 (1.00) |
0.0799 (1.00) |
||
1q loss | 25 (5%) | 488 |
0.344 (1.00) |
0.15 (1.00) |
0.455 (1.00) |
0.0632 (1.00) |
0.475 (1.00) |
0.465 (1.00) |
0.361 (1.00) |
0.282 (1.00) |
0.0761 (1.00) |
0.413 (1.00) |
0.163 (1.00) |
0.138 (1.00) |
2q loss | 18 (4%) | 495 |
0.00041 (0.274) |
0.00573 (1.00) |
0.0694 (1.00) |
0.607 (1.00) |
0.423 (1.00) |
0.125 (1.00) |
0.026 (1.00) |
0.811 (1.00) |
0.691 (1.00) |
0.384 (1.00) |
||
3p loss | 30 (6%) | 483 |
0.0048 (1.00) |
0.0583 (1.00) |
0.00637 (1.00) |
0.272 (1.00) |
0.038 (1.00) |
0.0211 (1.00) |
0.00103 (0.664) |
0.00047 (0.312) |
0.193 (1.00) |
0.00293 (1.00) |
||
3q loss | 28 (5%) | 485 |
0.176 (1.00) |
0.882 (1.00) |
0.00723 (1.00) |
0.133 (1.00) |
0.252 (1.00) |
0.769 (1.00) |
0.0723 (1.00) |
0.0628 (1.00) |
0.0903 (1.00) |
0.0169 (1.00) |
0.269 (1.00) |
0.0354 (1.00) |
6p loss | 30 (6%) | 483 |
0.0333 (1.00) |
0.0581 (1.00) |
0.187 (1.00) |
0.685 (1.00) |
0.371 (1.00) |
0.462 (1.00) |
0.4 (1.00) |
0.404 (1.00) |
0.0123 (1.00) |
0.00304 (1.00) |
||
7p loss | 3 (1%) | 510 |
0.0499 (1.00) |
0.245 (1.00) |
1 (1.00) |
0.895 (1.00) |
1 (1.00) |
1 (1.00) |
||||||
7q loss | 3 (1%) | 510 |
0.0494 (1.00) |
0.243 (1.00) |
0.374 (1.00) |
0.176 (1.00) |
1 (1.00) |
1 (1.00) |
||||||
9q loss | 51 (10%) | 462 |
0.153 (1.00) |
0.461 (1.00) |
0.622 (1.00) |
0.343 (1.00) |
0.467 (1.00) |
0.132 (1.00) |
0.396 (1.00) |
0.824 (1.00) |
0.593 (1.00) |
0.0334 (1.00) |
||
12p loss | 26 (5%) | 487 |
0.00381 (1.00) |
0.0632 (1.00) |
0.606 (1.00) |
1 (1.00) |
0.403 (1.00) |
0.32 (1.00) |
0.0791 (1.00) |
0.152 (1.00) |
0.553 (1.00) |
0.93 (1.00) |
||
15q loss | 51 (10%) | 462 |
1 (1.00) |
0.706 (1.00) |
0.0283 (1.00) |
0.00179 (1.00) |
0.271 (1.00) |
0.0463 (1.00) |
0.00095 (0.617) |
0.00139 (0.883) |
0.235 (1.00) |
0.473 (1.00) |
0.0574 (1.00) |
0.0839 (1.00) |
16p loss | 14 (3%) | 499 |
0.00495 (1.00) |
0.043 (1.00) |
0.866 (1.00) |
0.201 (1.00) |
0.0287 (1.00) |
0.12 (1.00) |
0.823 (1.00) |
0.357 (1.00) |
0.706 (1.00) |
0.136 (1.00) |
||
16q loss | 22 (4%) | 491 |
0.00582 (1.00) |
0.00221 (1.00) |
0.376 (1.00) |
0.0681 (1.00) |
0.0168 (1.00) |
0.0919 (1.00) |
0.664 (1.00) |
0.00355 (1.00) |
0.295 (1.00) |
0.00926 (1.00) |
||
17p loss | 13 (3%) | 500 |
0.0941 (1.00) |
0.132 (1.00) |
1 (1.00) |
0.782 (1.00) |
0.0139 (1.00) |
0.0622 (1.00) |
0.158 (1.00) |
0.00634 (1.00) |
0.714 (1.00) |
0.0114 (1.00) |
||
17q loss | 8 (2%) | 505 |
0.116 (1.00) |
0.2 (1.00) |
0.837 (1.00) |
0.51 (1.00) |
0.27 (1.00) |
0.531 (1.00) |
0.162 (1.00) |
0.265 (1.00) |
1 (1.00) |
0.0235 (1.00) |
||
18p loss | 68 (13%) | 445 |
0.321 (1.00) |
0.0298 (1.00) |
0.203 (1.00) |
0.00138 (0.878) |
0.582 (1.00) |
0.105 (1.00) |
0.134 (1.00) |
0.0292 (1.00) |
0.597 (1.00) |
0.915 (1.00) |
0.471 (1.00) |
0.512 (1.00) |
19p loss | 25 (5%) | 488 |
0.847 (1.00) |
0.433 (1.00) |
0.526 (1.00) |
0.875 (1.00) |
0.103 (1.00) |
0.809 (1.00) |
0.562 (1.00) |
0.458 (1.00) |
0.131 (1.00) |
0.116 (1.00) |
0.0259 (1.00) |
0.0558 (1.00) |
20p loss | 7 (1%) | 506 |
0.225 (1.00) |
0.156 (1.00) |
0.793 (1.00) |
1 (1.00) |
0.26 (1.00) |
0.395 (1.00) |
0.447 (1.00) |
0.482 (1.00) |
0.71 (1.00) |
0.481 (1.00) |
||
20q loss | 3 (1%) | 510 |
0.253 (1.00) |
0.446 (1.00) |
0.024 (1.00) |
0.138 (1.00) |
0.234 (1.00) |
1 (1.00) |
0.301 (1.00) |
0.888 (1.00) |
P value = 6e-05 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
1P GAIN MUTATED | 4 | 9 | 0 |
1P GAIN WILD-TYPE | 168 | 111 | 221 |
P value = 0.00016 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
1P GAIN MUTATED | 5 | 8 | 0 | 0 |
1P GAIN WILD-TYPE | 220 | 73 | 167 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
1P GAIN MUTATED | 0 | 13 | 0 | 0 | 0 |
1P GAIN WILD-TYPE | 135 | 99 | 108 | 128 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
1P GAIN MUTATED | 0 | 13 | 0 | 0 |
1P GAIN WILD-TYPE | 135 | 100 | 125 | 138 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
1P GAIN MUTATED | 3 | 0 | 10 |
1P GAIN WILD-TYPE | 219 | 184 | 93 |
P value = 0.00014 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
1P GAIN MUTATED | 1 | 2 | 1 | 9 |
1P GAIN WILD-TYPE | 90 | 135 | 187 | 80 |
P value = 0.00023 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
1Q GAIN MUTATED | 6 | 14 | 3 |
1Q GAIN WILD-TYPE | 166 | 106 | 218 |
P value = 6e-05 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
1Q GAIN MUTATED | 2 | 14 | 0 | 5 | 2 |
1Q GAIN WILD-TYPE | 133 | 98 | 108 | 123 | 26 |
P value = 4e-05 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
5P GAIN MUTATED | 0 | 9 | 0 | 1 | 1 |
5P GAIN WILD-TYPE | 135 | 103 | 108 | 127 | 27 |
P value = 1e-04 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
5P GAIN MUTATED | 1 | 9 | 0 | 1 |
5P GAIN WILD-TYPE | 134 | 104 | 125 | 137 |
P value = 0.00025 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
5Q GAIN MUTATED | 1 | 6 | 0 | 1 |
5Q GAIN WILD-TYPE | 224 | 75 | 167 | 39 |
P value = 0.00022 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
5Q GAIN MUTATED | 0 | 7 | 0 | 0 | 1 |
5Q GAIN WILD-TYPE | 135 | 105 | 108 | 128 | 27 |
P value = 0.00018 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
5Q GAIN MUTATED | 1 | 7 | 0 | 0 |
5Q GAIN WILD-TYPE | 134 | 106 | 125 | 138 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
7P GAIN MUTATED | 20 | 91 | 10 |
7P GAIN WILD-TYPE | 152 | 29 | 211 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
7P GAIN MUTATED | 40 | 57 | 16 | 8 |
7P GAIN WILD-TYPE | 185 | 24 | 151 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
7P GAIN MUTATED | 22 | 59 | 9 | 23 | 6 |
7P GAIN WILD-TYPE | 113 | 53 | 99 | 105 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
7P GAIN MUTATED | 19 | 58 | 11 | 31 |
7P GAIN WILD-TYPE | 116 | 55 | 114 | 107 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
7P GAIN MUTATED | 38 | 26 | 55 |
7P GAIN WILD-TYPE | 184 | 158 | 48 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
7P GAIN MUTATED | 13 | 22 | 32 | 51 |
7P GAIN WILD-TYPE | 78 | 115 | 156 | 38 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
7Q GAIN MUTATED | 33 | 99 | 19 |
7Q GAIN WILD-TYPE | 139 | 21 | 202 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
7Q GAIN MUTATED | 58 | 60 | 24 | 9 |
7Q GAIN WILD-TYPE | 167 | 21 | 143 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
7Q GAIN MUTATED | 36 | 62 | 12 | 31 | 8 |
7Q GAIN WILD-TYPE | 99 | 50 | 96 | 97 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
7Q GAIN MUTATED | 32 | 60 | 16 | 41 |
7Q GAIN WILD-TYPE | 103 | 53 | 109 | 97 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
7Q GAIN MUTATED | 51 | 39 | 59 |
7Q GAIN WILD-TYPE | 171 | 145 | 44 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
7Q GAIN MUTATED | 19 | 29 | 45 | 55 |
7Q GAIN WILD-TYPE | 72 | 108 | 143 | 34 |
P value = 9e-05 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
8P GAIN MUTATED | 28 | 10 | 8 |
8P GAIN WILD-TYPE | 144 | 110 | 213 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
8Q GAIN MUTATED | 35 | 13 | 8 |
8Q GAIN WILD-TYPE | 137 | 107 | 213 |
P value = 5e-05 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
8Q GAIN MUTATED | 41 | 4 | 8 | 3 |
8Q GAIN WILD-TYPE | 184 | 77 | 159 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
10P GAIN MUTATED | 46 | 6 | 5 |
10P GAIN WILD-TYPE | 126 | 114 | 216 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
10P GAIN MUTATED | 53 | 3 | 0 | 1 |
10P GAIN WILD-TYPE | 172 | 78 | 167 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
10P GAIN MUTATED | 29 | 14 | 0 | 13 | 1 |
10P GAIN WILD-TYPE | 106 | 98 | 108 | 115 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
10P GAIN MUTATED | 29 | 14 | 0 | 14 |
10P GAIN WILD-TYPE | 106 | 99 | 125 | 124 |
P value = 0.00029 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
12P GAIN MUTATED | 18 | 11 | 4 |
12P GAIN WILD-TYPE | 154 | 109 | 217 |
P value = 0.00013 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
18P GAIN MUTATED | 10 | 7 | 0 |
18P GAIN WILD-TYPE | 162 | 113 | 221 |
P value = 0.00023 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
18Q GAIN MUTATED | 2 | 9 | 0 | 1 |
18Q GAIN WILD-TYPE | 133 | 104 | 125 | 137 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
19P GAIN MUTATED | 6 | 37 | 57 |
19P GAIN WILD-TYPE | 166 | 83 | 164 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
19P GAIN MUTATED | 10 | 27 | 60 | 3 |
19P GAIN WILD-TYPE | 215 | 54 | 107 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
19P GAIN MUTATED | 5 | 30 | 44 | 20 | 1 |
19P GAIN WILD-TYPE | 130 | 82 | 64 | 108 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
19P GAIN MUTATED | 6 | 28 | 44 | 22 |
19P GAIN WILD-TYPE | 129 | 85 | 81 | 116 |
P value = 0.00018 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
19P GAIN MUTATED | 18 | 18 | 33 | 31 |
19P GAIN WILD-TYPE | 119 | 89 | 150 | 51 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
19Q GAIN MUTATED | 2 | 23 | 0 |
19Q GAIN WILD-TYPE | 170 | 97 | 221 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
19Q GAIN MUTATED | 2 | 21 | 0 | 2 |
19Q GAIN WILD-TYPE | 223 | 60 | 167 | 38 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
19Q GAIN MUTATED | 1 | 19 | 0 | 4 | 1 |
19Q GAIN WILD-TYPE | 134 | 93 | 108 | 124 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
19Q GAIN MUTATED | 2 | 19 | 0 | 4 |
19Q GAIN WILD-TYPE | 133 | 94 | 125 | 134 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
19Q GAIN MUTATED | 3 | 2 | 20 |
19Q GAIN WILD-TYPE | 219 | 182 | 83 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
19Q GAIN MUTATED | 20 | 0 | 5 |
19Q GAIN WILD-TYPE | 165 | 161 | 154 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
19Q GAIN MUTATED | 2 | 0 | 2 | 21 |
19Q GAIN WILD-TYPE | 89 | 137 | 186 | 68 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
20P GAIN MUTATED | 7 | 31 | 5 |
20P GAIN WILD-TYPE | 165 | 89 | 216 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
20P GAIN MUTATED | 8 | 27 | 6 | 2 |
20P GAIN WILD-TYPE | 217 | 54 | 161 | 38 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
20P GAIN MUTATED | 3 | 28 | 3 | 8 | 1 |
20P GAIN WILD-TYPE | 132 | 84 | 105 | 120 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
20P GAIN MUTATED | 3 | 26 | 4 | 10 |
20P GAIN WILD-TYPE | 132 | 87 | 121 | 128 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
20P GAIN MUTATED | 8 | 10 | 25 |
20P GAIN WILD-TYPE | 214 | 174 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
20P GAIN MUTATED | 3 | 5 | 10 | 25 |
20P GAIN WILD-TYPE | 88 | 132 | 178 | 64 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
20Q GAIN MUTATED | 7 | 31 | 5 |
20Q GAIN WILD-TYPE | 165 | 89 | 216 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
20Q GAIN MUTATED | 8 | 28 | 6 | 1 |
20Q GAIN WILD-TYPE | 217 | 53 | 161 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
20Q GAIN MUTATED | 4 | 29 | 3 | 6 | 1 |
20Q GAIN WILD-TYPE | 131 | 83 | 105 | 122 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
20Q GAIN MUTATED | 4 | 27 | 4 | 8 |
20Q GAIN WILD-TYPE | 131 | 86 | 121 | 130 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
20Q GAIN MUTATED | 10 | 8 | 25 |
20Q GAIN WILD-TYPE | 212 | 176 | 78 |
P value = 4e-05 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
20Q GAIN MUTATED | 29 | 4 | 10 |
20Q GAIN WILD-TYPE | 156 | 157 | 149 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
20Q GAIN MUTATED | 6 | 4 | 8 | 25 |
20Q GAIN WILD-TYPE | 85 | 133 | 180 | 64 |
P value = 4e-05 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
22Q GAIN MUTATED | 2 | 3 | 18 | 0 |
22Q GAIN WILD-TYPE | 223 | 78 | 149 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
XQ GAIN MUTATED | 31 | 7 | 3 |
XQ GAIN WILD-TYPE | 141 | 113 | 218 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
XQ GAIN MUTATED | 35 | 4 | 0 | 2 |
XQ GAIN WILD-TYPE | 190 | 77 | 167 | 38 |
P value = 1e-04 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
XQ GAIN MUTATED | 19 | 7 | 0 | 11 | 4 |
XQ GAIN WILD-TYPE | 116 | 105 | 108 | 117 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
XQ GAIN MUTATED | 23 | 7 | 0 | 11 |
XQ GAIN WILD-TYPE | 112 | 106 | 125 | 127 |
P value = 0.00019 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 7 | 7 | 6 |
1P LOSS MUTATED | 0 | 1 | 7 | 2 |
1P LOSS WILD-TYPE | 7 | 6 | 0 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
1P LOSS MUTATED | 6 | 13 | 165 |
1P LOSS WILD-TYPE | 166 | 107 | 56 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
1P LOSS MUTATED | 5 | 5 | 165 | 9 |
1P LOSS WILD-TYPE | 220 | 76 | 2 | 31 |
P value = 0.00027 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 52 | 62 | 68 | 74 |
1P LOSS MUTATED | 8 | 15 | 26 | 36 |
1P LOSS WILD-TYPE | 44 | 47 | 42 | 38 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
1P LOSS MUTATED | 3 | 10 | 106 | 55 | 10 |
1P LOSS WILD-TYPE | 132 | 102 | 2 | 73 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
1P LOSS MUTATED | 3 | 8 | 122 | 51 |
1P LOSS WILD-TYPE | 132 | 105 | 3 | 87 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
1P LOSS MUTATED | 25 | 9 | 84 | 66 |
1P LOSS WILD-TYPE | 112 | 98 | 99 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
1P LOSS MUTATED | 80 | 97 | 7 |
1P LOSS WILD-TYPE | 142 | 87 | 96 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
1P LOSS MUTATED | 29 | 82 | 73 |
1P LOSS WILD-TYPE | 156 | 79 | 86 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
1P LOSS MUTATED | 6 | 82 | 89 | 7 |
1P LOSS WILD-TYPE | 85 | 55 | 99 | 82 |
P value = 0.00024 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
2P LOSS MUTATED | 16 | 2 | 3 |
2P LOSS WILD-TYPE | 156 | 118 | 218 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
4P LOSS MUTATED | 25 | 1 | 45 | 0 |
4P LOSS WILD-TYPE | 200 | 80 | 122 | 40 |
P value = 4e-05 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
4P LOSS MUTATED | 15 | 5 | 30 | 17 | 3 |
4P LOSS WILD-TYPE | 120 | 107 | 78 | 111 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
4P LOSS MUTATED | 13 | 4 | 37 | 16 |
4P LOSS WILD-TYPE | 122 | 109 | 88 | 122 |
P value = 5e-05 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
4P LOSS MUTATED | 11 | 12 | 22 | 26 |
4P LOSS WILD-TYPE | 126 | 95 | 161 | 56 |
P value = 0.00034 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
4P LOSS MUTATED | 38 | 30 | 3 |
4P LOSS WILD-TYPE | 184 | 154 | 100 |
P value = 4e-05 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
4P LOSS MUTATED | 10 | 35 | 26 |
4P LOSS WILD-TYPE | 175 | 126 | 133 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
4P LOSS MUTATED | 6 | 34 | 29 | 2 |
4P LOSS WILD-TYPE | 85 | 103 | 159 | 87 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
4Q LOSS MUTATED | 40 | 1 | 48 | 3 |
4Q LOSS WILD-TYPE | 185 | 80 | 119 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
4Q LOSS MUTATED | 18 | 9 | 39 | 25 |
4Q LOSS WILD-TYPE | 117 | 104 | 86 | 113 |
P value = 0.00021 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
4Q LOSS MUTATED | 12 | 18 | 35 | 27 |
4Q LOSS WILD-TYPE | 125 | 89 | 148 | 55 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
4Q LOSS MUTATED | 14 | 42 | 36 |
4Q LOSS WILD-TYPE | 171 | 119 | 123 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
4Q LOSS MUTATED | 9 | 39 | 39 | 5 |
4Q LOSS WILD-TYPE | 82 | 98 | 149 | 84 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
5P LOSS MUTATED | 24 | 7 | 3 |
5P LOSS WILD-TYPE | 148 | 113 | 218 |
P value = 1e-04 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
5P LOSS MUTATED | 27 | 4 | 2 | 1 |
5P LOSS WILD-TYPE | 198 | 77 | 165 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
5Q LOSS MUTATED | 26 | 4 | 3 |
5Q LOSS WILD-TYPE | 146 | 116 | 218 |
P value = 0.00017 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
5Q LOSS MUTATED | 26 | 4 | 2 | 1 |
5Q LOSS WILD-TYPE | 199 | 77 | 165 | 39 |
P value = 9e-05 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
5Q LOSS MUTATED | 6 | 18 | 8 | 1 |
5Q LOSS WILD-TYPE | 131 | 89 | 175 | 81 |
P value = 8e-05 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
6Q LOSS MUTATED | 22 | 27 | 14 |
6Q LOSS WILD-TYPE | 150 | 93 | 207 |
P value = 4e-05 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
6Q LOSS MUTATED | 20 | 8 | 15 | 18 |
6Q LOSS WILD-TYPE | 71 | 129 | 173 | 71 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
8P LOSS MUTATED | 7 | 10 | 0 |
8P LOSS WILD-TYPE | 165 | 110 | 221 |
P value = 5e-05 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
8P LOSS MUTATED | 6 | 10 | 0 | 1 |
8P LOSS WILD-TYPE | 219 | 71 | 167 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
8P LOSS MUTATED | 0 | 13 | 0 | 3 | 1 |
8P LOSS WILD-TYPE | 135 | 99 | 108 | 125 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
8P LOSS MUTATED | 1 | 13 | 0 | 3 |
8P LOSS WILD-TYPE | 134 | 100 | 125 | 135 |
P value = 0.00027 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
8P LOSS MUTATED | 1 | 5 | 1 | 9 |
8P LOSS WILD-TYPE | 90 | 132 | 187 | 80 |
P value = 2e-04 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
8Q LOSS MUTATED | 3 | 8 | 0 |
8Q LOSS WILD-TYPE | 169 | 112 | 221 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
8Q LOSS MUTATED | 2 | 8 | 0 | 1 |
8Q LOSS WILD-TYPE | 223 | 73 | 167 | 39 |
P value = 8e-05 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
8Q LOSS MUTATED | 0 | 9 | 0 | 1 | 1 |
8Q LOSS WILD-TYPE | 135 | 103 | 108 | 127 | 27 |
P value = 7e-05 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
8Q LOSS MUTATED | 1 | 9 | 0 | 1 |
8Q LOSS WILD-TYPE | 134 | 104 | 125 | 137 |
P value = 9e-05 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
8Q LOSS MUTATED | 0 | 3 | 0 | 7 |
8Q LOSS WILD-TYPE | 91 | 134 | 188 | 82 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
9P LOSS MUTATED | 41 | 47 | 30 |
9P LOSS WILD-TYPE | 131 | 73 | 191 |
P value = 3e-04 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
9P LOSS MUTATED | 61 | 28 | 22 | 7 |
9P LOSS WILD-TYPE | 164 | 53 | 145 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
10P LOSS MUTATED | 8 | 70 | 5 |
10P LOSS WILD-TYPE | 164 | 50 | 216 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
10P LOSS MUTATED | 4 | 68 | 6 | 5 |
10P LOSS WILD-TYPE | 221 | 13 | 161 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 52 | 62 | 68 | 74 |
10P LOSS MUTATED | 4 | 24 | 3 | 6 |
10P LOSS WILD-TYPE | 48 | 38 | 65 | 68 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
10P LOSS MUTATED | 1 | 64 | 1 | 12 | 4 |
10P LOSS WILD-TYPE | 134 | 48 | 107 | 116 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
10P LOSS MUTATED | 1 | 63 | 6 | 12 |
10P LOSS WILD-TYPE | 134 | 50 | 119 | 126 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
10P LOSS MUTATED | 33 | 26 | 20 | 4 |
10P LOSS WILD-TYPE | 104 | 81 | 163 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
10P LOSS MUTATED | 11 | 12 | 60 |
10P LOSS WILD-TYPE | 211 | 172 | 43 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
10P LOSS MUTATED | 62 | 3 | 18 |
10P LOSS WILD-TYPE | 123 | 158 | 141 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
10P LOSS MUTATED | 4 | 5 | 11 | 63 |
10P LOSS WILD-TYPE | 87 | 132 | 177 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
10Q LOSS MUTATED | 17 | 72 | 7 |
10Q LOSS WILD-TYPE | 155 | 48 | 214 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
10Q LOSS MUTATED | 16 | 69 | 6 | 5 |
10Q LOSS WILD-TYPE | 209 | 12 | 161 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 52 | 62 | 68 | 74 |
10Q LOSS MUTATED | 6 | 27 | 7 | 7 |
10Q LOSS WILD-TYPE | 46 | 35 | 61 | 67 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
10Q LOSS MUTATED | 5 | 70 | 1 | 15 | 4 |
10Q LOSS WILD-TYPE | 130 | 42 | 107 | 113 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
10Q LOSS MUTATED | 6 | 68 | 6 | 15 |
10Q LOSS WILD-TYPE | 129 | 45 | 119 | 123 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
10Q LOSS MUTATED | 36 | 31 | 24 | 5 |
10Q LOSS WILD-TYPE | 101 | 76 | 159 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
10Q LOSS MUTATED | 15 | 15 | 66 |
10Q LOSS WILD-TYPE | 207 | 169 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
10Q LOSS MUTATED | 67 | 7 | 22 |
10Q LOSS WILD-TYPE | 118 | 154 | 137 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
10Q LOSS MUTATED | 7 | 7 | 16 | 66 |
10Q LOSS WILD-TYPE | 84 | 130 | 172 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
11P LOSS MUTATED | 47 | 12 | 4 |
11P LOSS WILD-TYPE | 125 | 108 | 217 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
11P LOSS MUTATED | 46 | 14 | 0 | 3 |
11P LOSS WILD-TYPE | 179 | 67 | 167 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
11P LOSS MUTATED | 14 | 31 | 0 | 11 | 6 |
11P LOSS WILD-TYPE | 121 | 81 | 108 | 117 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
11P LOSS MUTATED | 17 | 34 | 0 | 11 |
11P LOSS WILD-TYPE | 118 | 79 | 125 | 127 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
11P LOSS MUTATED | 13 | 29 | 17 | 4 |
11P LOSS WILD-TYPE | 124 | 78 | 166 | 78 |
P value = 5e-05 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
11P LOSS MUTATED | 22 | 14 | 27 |
11P LOSS WILD-TYPE | 200 | 170 | 76 |
P value = 0.00017 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
11Q LOSS MUTATED | 11 | 9 | 1 |
11Q LOSS WILD-TYPE | 161 | 111 | 220 |
P value = 7e-05 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
11Q LOSS MUTATED | 9 | 10 | 0 | 2 |
11Q LOSS WILD-TYPE | 216 | 71 | 167 | 38 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
11Q LOSS MUTATED | 1 | 16 | 0 | 3 | 1 |
11Q LOSS WILD-TYPE | 134 | 96 | 108 | 125 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
11Q LOSS MUTATED | 2 | 16 | 0 | 3 |
11Q LOSS WILD-TYPE | 133 | 97 | 125 | 135 |
P value = 7e-05 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
11Q LOSS MUTATED | 5 | 3 | 13 |
11Q LOSS WILD-TYPE | 217 | 181 | 90 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
12Q LOSS MUTATED | 42 | 2 | 7 |
12Q LOSS WILD-TYPE | 130 | 118 | 214 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
12Q LOSS MUTATED | 41 | 3 | 5 | 2 |
12Q LOSS WILD-TYPE | 184 | 78 | 162 | 38 |
P value = 9e-05 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 7 | 7 | 6 |
13Q LOSS MUTATED | 2 | 7 | 0 | 0 |
13Q LOSS WILD-TYPE | 5 | 0 | 7 | 6 |
P value = 5e-05 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
13Q LOSS MUTATED | 57 | 29 | 30 |
13Q LOSS WILD-TYPE | 115 | 91 | 191 |
P value = 0.00016 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
14Q LOSS MUTATED | 29 | 27 | 20 | 4 |
14Q LOSS WILD-TYPE | 196 | 54 | 147 | 36 |
P value = 2e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
14Q LOSS MUTATED | 10 | 35 | 11 | 16 | 7 |
14Q LOSS WILD-TYPE | 125 | 77 | 97 | 112 | 21 |
P value = 3e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
14Q LOSS MUTATED | 15 | 35 | 13 | 16 |
14Q LOSS WILD-TYPE | 120 | 78 | 112 | 122 |
P value = 0.00031 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
18Q LOSS MUTATED | 19 | 10 | 33 | 0 |
18Q LOSS WILD-TYPE | 206 | 71 | 134 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
19Q LOSS MUTATED | 22 | 17 | 170 |
19Q LOSS WILD-TYPE | 150 | 103 | 51 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
19Q LOSS MUTATED | 30 | 5 | 165 | 9 |
19Q LOSS WILD-TYPE | 195 | 76 | 2 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
19Q LOSS MUTATED | 18 | 15 | 106 | 59 | 10 |
19Q LOSS WILD-TYPE | 117 | 97 | 2 | 69 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
19Q LOSS MUTATED | 16 | 14 | 122 | 56 |
19Q LOSS WILD-TYPE | 119 | 99 | 3 | 82 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
19Q LOSS MUTATED | 31 | 22 | 88 | 68 |
19Q LOSS WILD-TYPE | 106 | 85 | 95 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
19Q LOSS MUTATED | 97 | 103 | 9 |
19Q LOSS WILD-TYPE | 125 | 81 | 94 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
19Q LOSS MUTATED | 34 | 96 | 78 |
19Q LOSS WILD-TYPE | 151 | 65 | 81 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
19Q LOSS MUTATED | 11 | 92 | 97 | 8 |
19Q LOSS WILD-TYPE | 80 | 45 | 91 | 81 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
21Q LOSS MUTATED | 26 | 4 | 6 |
21Q LOSS WILD-TYPE | 146 | 116 | 215 |
P value = 0.00021 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
21Q LOSS MUTATED | 26 | 6 | 2 | 2 |
21Q LOSS WILD-TYPE | 199 | 75 | 165 | 38 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
22Q LOSS MUTATED | 25 | 28 | 4 |
22Q LOSS WILD-TYPE | 147 | 92 | 217 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
22Q LOSS MUTATED | 24 | 24 | 4 | 5 |
22Q LOSS WILD-TYPE | 201 | 57 | 163 | 35 |
P value = 4e-05 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 52 | 62 | 68 | 74 |
22Q LOSS MUTATED | 2 | 18 | 5 | 4 |
22Q LOSS WILD-TYPE | 50 | 44 | 63 | 70 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
22Q LOSS MUTATED | 9 | 31 | 2 | 10 | 4 |
22Q LOSS WILD-TYPE | 126 | 81 | 106 | 118 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
22Q LOSS MUTATED | 11 | 29 | 4 | 12 |
22Q LOSS WILD-TYPE | 124 | 84 | 121 | 126 |
P value = 0.00033 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
22Q LOSS MUTATED | 18 | 15 | 24 |
22Q LOSS WILD-TYPE | 204 | 169 | 79 |
P value = 0.00015 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
22Q LOSS MUTATED | 5 | 13 | 15 | 23 |
22Q LOSS WILD-TYPE | 86 | 124 | 173 | 66 |
P value = 5e-05 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
XQ LOSS MUTATED | 11 | 23 | 25 | 10 | 0 |
XQ LOSS WILD-TYPE | 124 | 89 | 83 | 118 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
XQ LOSS MUTATED | 10 | 23 | 29 | 7 |
XQ LOSS WILD-TYPE | 125 | 90 | 96 | 131 |
P value = 8e-05 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
XQ LOSS MUTATED | 12 | 16 | 16 | 25 |
XQ LOSS WILD-TYPE | 125 | 91 | 167 | 57 |
-
Copy number data file = transformed.cor.cli.txt
-
Molecular subtypes file = LGG-TP.transferedmergedcluster.txt
-
Number of patients = 513
-
Number of significantly arm-level cnvs = 79
-
Number of molecular subtypes = 12
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.