This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 52 focal events and 12 molecular subtypes across 513 patients, 197 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1q22 cnv correlated to 'CN_CNMF'.
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amp_1q32.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_3q26.33 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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amp_4q12 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_7p11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_7q31.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_7q32.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_8q24.13 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_10p15.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_12p13.32 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_12q14.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_15q26.3 cnv correlated to 'CN_CNMF'.
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amp_19p13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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amp_19p13.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_xp11.22 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_xp11.22 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_1p36.32 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1p32.3 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_2q37.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_3p21.31 cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
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del_3q13.31 cnv correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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del_3q29 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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del_4q34.3 cnv correlated to 'METHLYATION_CNMF'.
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del_5p15.33 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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del_5q34 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_6p25.3 cnv correlated to 'CN_CNMF'.
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del_6q22.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6q24.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_8q24.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_9p23 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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del_9p21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10q26.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_11p15.5 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_11p15.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_12q12 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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del_13q14.2 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_13q14.2 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_13q34 cnv correlated to 'CN_CNMF'.
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del_14q24.3 cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_19q13.41 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_19q13.42 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_22q13.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
del 1p36 32 | 206 (40%) | 307 |
0.00045 (0.188) |
0.00015 (0.0652) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.00067 (0.273) |
0.846 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
del 1p32 3 | 196 (38%) | 317 |
0.0288 (1.00) |
0.00017 (0.0734) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.00057 (0.234) |
0.614 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
del 10q26 3 | 151 (29%) | 362 |
0.0838 (1.00) |
0.705 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.00026 (0.11) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
amp 7p11 2 | 128 (25%) | 385 |
0.763 (1.00) |
0.404 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
5e-05 (0.0226) |
0.0125 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.00042 (0.176) |
1e-05 (0.00604) |
4e-05 (0.0183) |
1e-05 (0.00604) |
del 9p21 3 | 176 (34%) | 337 |
0.335 (1.00) |
0.0625 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
2e-05 (0.00944) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.251 (1.00) |
1e-05 (0.00604) |
0.00084 (0.336) |
1e-05 (0.00604) |
del 19q13 41 | 267 (52%) | 246 |
0.0338 (1.00) |
0.01 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.00092 (0.367) |
0.185 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
del 19q13 42 | 278 (54%) | 235 |
0.0362 (1.00) |
0.0213 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.00229 (0.859) |
0.575 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
1e-05 (0.00604) |
del 22q13 31 | 77 (15%) | 436 |
0.252 (1.00) |
0.0422 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.00029 (0.123) |
0.0119 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.0353 (1.00) |
3e-05 (0.0139) |
0.00165 (0.63) |
4e-05 (0.0183) |
amp 1q32 1 | 43 (8%) | 470 |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.164 (1.00) |
0.354 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.252 (1.00) |
2e-05 (0.00944) |
0.00137 (0.534) |
1e-05 (0.00604) |
||
amp 7q31 2 | 174 (34%) | 339 |
1 (1.00) |
0.812 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.0041 (1.00) |
0.188 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.0112 (1.00) |
1e-05 (0.00604) |
0.00879 (1.00) |
1e-05 (0.00604) |
amp 7q32 3 | 182 (35%) | 331 |
0.697 (1.00) |
1 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.00675 (1.00) |
0.166 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.0546 (1.00) |
1e-05 (0.00604) |
0.0222 (1.00) |
1e-05 (0.00604) |
amp 12q14 1 | 37 (7%) | 476 |
1e-05 (0.00604) |
2e-05 (0.00944) |
0.0157 (1.00) |
0.729 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.0028 (1.00) |
1e-05 (0.00604) |
0.0427 (1.00) |
1e-05 (0.00604) |
||
amp 19p13 2 | 122 (24%) | 391 |
0.0749 (1.00) |
0.15 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.276 (1.00) |
0.201 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.00023 (0.0982) |
0.142 (1.00) |
0.0419 (1.00) |
0.00052 (0.216) |
del 11p15 5 | 104 (20%) | 409 |
0.644 (1.00) |
0.00051 (0.212) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.146 (1.00) |
0.632 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
2e-05 (0.00944) |
0.00474 (1.00) |
0.99 (1.00) |
0.888 (1.00) |
del 11p15 1 | 72 (14%) | 441 |
1 (1.00) |
0.0309 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.0126 (1.00) |
0.792 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
5e-05 (0.0226) |
3e-05 (0.0139) |
0.874 (1.00) |
0.0336 (1.00) |
amp 4q12 | 30 (6%) | 483 |
1 (1.00) |
0.0422 (1.00) |
0.0002 (0.0858) |
0.00018 (0.0776) |
0.00872 (1.00) |
0.278 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.00339 (1.00) |
0.00013 (0.0569) |
0.944 (1.00) |
0.00379 (1.00) |
amp 8q24 13 | 100 (19%) | 413 |
0.369 (1.00) |
0.239 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.0415 (1.00) |
0.485 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.0289 (1.00) |
0.00096 (0.382) |
0.112 (1.00) |
2e-05 (0.00944) |
amp 10p15 3 | 71 (14%) | 442 |
0.526 (1.00) |
0.0833 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.0293 (1.00) |
0.135 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.00105 (0.416) |
0.0773 (1.00) |
0.333 (1.00) |
0.00011 (0.0485) |
amp 19p13 3 | 129 (25%) | 384 |
0.075 (1.00) |
0.149 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.884 (1.00) |
0.579 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.00012 (0.0528) |
0.157 (1.00) |
0.0457 (1.00) |
0.00083 (0.333) |
amp xp11 22 | 63 (12%) | 450 |
0.649 (1.00) |
1 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.0265 (1.00) |
0.39 (1.00) |
2e-05 (0.00944) |
1e-05 (0.00604) |
0.00033 (0.139) |
0.352 (1.00) |
0.0741 (1.00) |
0.00946 (1.00) |
del 5q34 | 64 (12%) | 449 |
0.444 (1.00) |
0.235 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.163 (1.00) |
1 (1.00) |
8e-05 (0.0357) |
1e-05 (0.00604) |
2e-05 (0.00944) |
0.146 (1.00) |
0.613 (1.00) |
0.666 (1.00) |
del 6q24 3 | 82 (16%) | 431 |
0.171 (1.00) |
0.28 (1.00) |
0.0003 (0.127) |
1e-05 (0.00604) |
0.0989 (1.00) |
0.62 (1.00) |
0.00145 (0.563) |
9e-05 (0.04) |
0.00013 (0.0569) |
0.164 (1.00) |
0.0213 (1.00) |
4e-05 (0.0183) |
del 13q14 2 | 142 (28%) | 371 |
0.179 (1.00) |
7e-05 (0.0314) |
1e-05 (0.00604) |
6e-05 (0.0271) |
0.0343 (1.00) |
0.605 (1.00) |
0.0002 (0.0858) |
2e-05 (0.00944) |
0.0183 (1.00) |
0.00572 (1.00) |
0.475 (1.00) |
0.413 (1.00) |
del 13q14 2 | 144 (28%) | 369 |
0.181 (1.00) |
6e-05 (0.0271) |
1e-05 (0.00604) |
3e-05 (0.0139) |
0.0327 (1.00) |
0.709 (1.00) |
0.00014 (0.061) |
3e-05 (0.0139) |
0.0162 (1.00) |
0.00337 (1.00) |
0.433 (1.00) |
0.361 (1.00) |
amp 12p13 32 | 72 (14%) | 441 |
0.865 (1.00) |
0.097 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.114 (1.00) |
0.191 (1.00) |
0.00018 (0.0776) |
4e-05 (0.0183) |
0.0101 (1.00) |
0.00647 (1.00) |
0.0243 (1.00) |
0.0853 (1.00) |
del 2q37 3 | 77 (15%) | 436 |
0.367 (1.00) |
0.0128 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.00472 (1.00) |
0.0201 (1.00) |
0.00024 (0.102) |
7e-05 (0.0314) |
0.0148 (1.00) |
0.141 (1.00) |
0.103 (1.00) |
0.0825 (1.00) |
del 6q22 31 | 78 (15%) | 435 |
0.617 (1.00) |
0.579 (1.00) |
6e-05 (0.0271) |
2e-05 (0.00944) |
0.115 (1.00) |
0.509 (1.00) |
0.00514 (1.00) |
0.00053 (0.219) |
0.00075 (0.301) |
0.121 (1.00) |
0.0064 (1.00) |
2e-05 (0.00944) |
amp xp11 22 | 48 (9%) | 465 |
0.649 (1.00) |
1 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.319 (1.00) |
0.73 (1.00) |
0.00152 (0.585) |
8e-05 (0.0357) |
0.0561 (1.00) |
0.598 (1.00) |
0.329 (1.00) |
0.108 (1.00) |
del 8q24 3 | 29 (6%) | 484 |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.927 (1.00) |
0.464 (1.00) |
0.00165 (0.63) |
0.00059 (0.241) |
0.00411 (1.00) |
0.00329 (1.00) |
0.166 (1.00) |
0.0314 (1.00) |
||
del 14q24 3 | 121 (24%) | 392 |
0.304 (1.00) |
0.0977 (1.00) |
0.00482 (1.00) |
0.0122 (1.00) |
0.00159 (0.609) |
0.0359 (1.00) |
0.00054 (0.223) |
9e-05 (0.04) |
0.00031 (0.131) |
0.0046 (1.00) |
0.00169 (0.642) |
0.00112 (0.442) |
amp 3q26 33 | 21 (4%) | 492 |
1 (1.00) |
0.582 (1.00) |
1e-05 (0.00604) |
0.00122 (0.477) |
0.147 (1.00) |
0.849 (1.00) |
0.00072 (0.29) |
0.00028 (0.119) |
0.00146 (0.565) |
0.0183 (1.00) |
0.0529 (1.00) |
0.00359 (1.00) |
del 3p21 31 | 49 (10%) | 464 |
1 (1.00) |
0.00684 (1.00) |
0.00015 (0.0652) |
0.00199 (0.748) |
0.00235 (0.877) |
0.263 (1.00) |
0.0231 (1.00) |
0.00605 (1.00) |
0.00054 (0.223) |
0.00232 (0.868) |
0.729 (1.00) |
0.0501 (1.00) |
del 3q13 31 | 39 (8%) | 474 |
0.175 (1.00) |
0.881 (1.00) |
0.00012 (0.0528) |
0.00381 (1.00) |
0.341 (1.00) |
0.174 (1.00) |
0.162 (1.00) |
0.0317 (1.00) |
0.156 (1.00) |
0.00057 (0.234) |
0.574 (1.00) |
0.113 (1.00) |
del 3q29 | 47 (9%) | 466 |
0.175 (1.00) |
0.882 (1.00) |
1e-05 (0.00604) |
0.00042 (0.176) |
0.405 (1.00) |
0.921 (1.00) |
0.00452 (1.00) |
0.00112 (0.442) |
0.128 (1.00) |
0.0047 (1.00) |
0.692 (1.00) |
0.171 (1.00) |
del 5p15 33 | 50 (10%) | 463 |
1 (1.00) |
0.0679 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.865 (1.00) |
0.581 (1.00) |
0.00472 (1.00) |
0.00068 (0.276) |
0.00192 (0.724) |
0.205 (1.00) |
0.947 (1.00) |
0.441 (1.00) |
del 9p23 | 150 (29%) | 363 |
0.446 (1.00) |
0.657 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.0395 (1.00) |
0.0025 (0.927) |
0.0132 (1.00) |
0.021 (1.00) |
0.917 (1.00) |
0.114 (1.00) |
0.41 (1.00) |
0.00278 (1.00) |
del 12q12 | 72 (14%) | 441 |
1 (1.00) |
0.151 (1.00) |
1e-05 (0.00604) |
1e-05 (0.00604) |
0.912 (1.00) |
0.284 (1.00) |
0.00645 (1.00) |
0.00338 (1.00) |
0.0133 (1.00) |
0.497 (1.00) |
0.909 (1.00) |
0.963 (1.00) |
amp 1q22 | 42 (8%) | 471 |
0.00057 (0.234) |
0.00744 (1.00) |
0.249 (1.00) |
0.883 (1.00) |
0.00154 (0.591) |
0.0143 (1.00) |
0.574 (1.00) |
0.0891 (1.00) |
0.154 (1.00) |
0.313 (1.00) |
||
amp 15q26 3 | 19 (4%) | 494 |
1 (1.00) |
0.0432 (1.00) |
4e-05 (0.0183) |
0.00096 (0.382) |
0.22 (1.00) |
0.606 (1.00) |
0.044 (1.00) |
0.00858 (1.00) |
0.497 (1.00) |
0.284 (1.00) |
0.592 (1.00) |
0.19 (1.00) |
del 4q34 3 | 138 (27%) | 375 |
1 (1.00) |
0.357 (1.00) |
0.0128 (1.00) |
1e-05 (0.00604) |
0.165 (1.00) |
0.225 (1.00) |
0.0542 (1.00) |
0.0725 (1.00) |
0.0305 (1.00) |
0.0376 (1.00) |
0.00121 (0.474) |
0.00587 (1.00) |
del 6p25 3 | 50 (10%) | 463 |
0.00016 (0.0693) |
0.0424 (1.00) |
0.231 (1.00) |
0.926 (1.00) |
0.0684 (1.00) |
0.113 (1.00) |
0.413 (1.00) |
0.253 (1.00) |
0.144 (1.00) |
0.0864 (1.00) |
||
del 13q34 | 110 (21%) | 403 |
0.506 (1.00) |
0.151 (1.00) |
0.0001 (0.0442) |
0.0119 (1.00) |
0.0855 (1.00) |
0.76 (1.00) |
0.00984 (1.00) |
0.00189 (0.714) |
0.0258 (1.00) |
0.00313 (1.00) |
0.311 (1.00) |
0.177 (1.00) |
amp 2p24 3 | 24 (5%) | 489 |
0.618 (1.00) |
0.583 (1.00) |
0.00243 (0.904) |
0.0333 (1.00) |
0.491 (1.00) |
1 (1.00) |
0.0245 (1.00) |
0.0142 (1.00) |
0.72 (1.00) |
0.0344 (1.00) |
0.44 (1.00) |
0.115 (1.00) |
amp 9q34 3 | 46 (9%) | 467 |
0.511 (1.00) |
0.884 (1.00) |
0.0948 (1.00) |
0.0491 (1.00) |
0.209 (1.00) |
0.761 (1.00) |
0.0802 (1.00) |
0.0141 (1.00) |
0.201 (1.00) |
0.0857 (1.00) |
0.283 (1.00) |
0.285 (1.00) |
amp 11q24 1 | 87 (17%) | 426 |
0.0714 (1.00) |
0.12 (1.00) |
0.613 (1.00) |
0.0112 (1.00) |
0.0542 (1.00) |
0.0294 (1.00) |
0.0703 (1.00) |
0.0653 (1.00) |
0.76 (1.00) |
0.115 (1.00) |
0.853 (1.00) |
0.044 (1.00) |
amp 13q34 | 22 (4%) | 491 |
0.00151 (0.583) |
0.00137 (0.534) |
0.187 (1.00) |
0.718 (1.00) |
0.0434 (1.00) |
0.00953 (1.00) |
0.296 (1.00) |
0.688 (1.00) |
0.962 (1.00) |
0.0504 (1.00) |
||
amp 17q25 1 | 44 (9%) | 469 |
0.0543 (1.00) |
0.36 (1.00) |
0.331 (1.00) |
0.44 (1.00) |
0.0595 (1.00) |
0.0695 (1.00) |
0.15 (1.00) |
0.564 (1.00) |
0.187 (1.00) |
0.563 (1.00) |
||
del 1q43 | 31 (6%) | 482 |
0.315 (1.00) |
0.00974 (1.00) |
0.101 (1.00) |
0.535 (1.00) |
0.028 (1.00) |
0.0132 (1.00) |
0.228 (1.00) |
0.759 (1.00) |
0.793 (1.00) |
0.302 (1.00) |
||
del 7p22 3 | 23 (4%) | 490 |
0.0254 (1.00) |
0.123 (1.00) |
0.256 (1.00) |
0.355 (1.00) |
0.576 (1.00) |
0.582 (1.00) |
0.503 (1.00) |
0.0953 (1.00) |
0.733 (1.00) |
0.354 (1.00) |
||
del 12p13 1 | 38 (7%) | 475 |
0.0007 (0.283) |
0.00184 (0.697) |
0.152 (1.00) |
1 (1.00) |
0.00762 (1.00) |
0.0133 (1.00) |
0.0575 (1.00) |
0.0432 (1.00) |
0.955 (1.00) |
0.252 (1.00) |
||
del 18q23 | 78 (15%) | 435 |
0.322 (1.00) |
0.329 (1.00) |
0.459 (1.00) |
0.00332 (1.00) |
0.462 (1.00) |
0.0751 (1.00) |
0.399 (1.00) |
0.0792 (1.00) |
0.346 (1.00) |
0.618 (1.00) |
0.53 (1.00) |
0.899 (1.00) |
del xq21 1 | 78 (15%) | 435 |
0.84 (1.00) |
0.267 (1.00) |
0.193 (1.00) |
0.0524 (1.00) |
0.0525 (1.00) |
0.154 (1.00) |
0.00756 (1.00) |
0.00068 (0.276) |
0.00119 (0.468) |
0.356 (1.00) |
0.118 (1.00) |
0.156 (1.00) |
P value = 0.00057 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
AMP PEAK 1(1Q22) MUTATED | 15 | 19 | 8 |
AMP PEAK 1(1Q22) WILD-TYPE | 157 | 101 | 213 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
AMP PEAK 2(1Q32.1) MUTATED | 10 | 28 | 5 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 162 | 92 | 216 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
AMP PEAK 2(1Q32.1) MUTATED | 12 | 24 | 6 | 1 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 213 | 57 | 161 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
AMP PEAK 2(1Q32.1) MUTATED | 2 | 26 | 1 | 12 | 2 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 133 | 86 | 107 | 116 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
AMP PEAK 2(1Q32.1) MUTATED | 3 | 24 | 5 | 11 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 132 | 89 | 120 | 127 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 2(1Q32.1) MUTATED | 8 | 13 | 22 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 214 | 171 | 81 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 2(1Q32.1) MUTATED | 5 | 3 | 14 | 21 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 86 | 134 | 174 | 68 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
AMP PEAK 4(3Q26.33) MUTATED | 1 | 17 | 3 |
AMP PEAK 4(3Q26.33) WILD-TYPE | 171 | 103 | 218 |
P value = 0.00028 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
AMP PEAK 4(3Q26.33) MUTATED | 4 | 13 | 1 | 3 |
AMP PEAK 4(3Q26.33) WILD-TYPE | 131 | 100 | 124 | 135 |
P value = 2e-04 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
AMP PEAK 5(4Q12) MUTATED | 17 | 10 | 3 |
AMP PEAK 5(4Q12) WILD-TYPE | 155 | 110 | 218 |
P value = 0.00018 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
AMP PEAK 5(4Q12) MUTATED | 19 | 9 | 1 | 1 |
AMP PEAK 5(4Q12) WILD-TYPE | 206 | 72 | 166 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
AMP PEAK 5(4Q12) MUTATED | 5 | 18 | 0 | 6 | 1 |
AMP PEAK 5(4Q12) WILD-TYPE | 130 | 94 | 108 | 122 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
AMP PEAK 5(4Q12) MUTATED | 5 | 19 | 0 | 6 |
AMP PEAK 5(4Q12) WILD-TYPE | 130 | 94 | 125 | 132 |
P value = 0.00013 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 5(4Q12) MUTATED | 7 | 7 | 16 |
AMP PEAK 5(4Q12) WILD-TYPE | 215 | 177 | 87 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
AMP PEAK 6(7P11.2) MUTATED | 21 | 98 | 9 |
AMP PEAK 6(7P11.2) WILD-TYPE | 151 | 22 | 212 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
AMP PEAK 6(7P11.2) MUTATED | 40 | 64 | 15 | 9 |
AMP PEAK 6(7P11.2) WILD-TYPE | 185 | 17 | 152 | 31 |
P value = 5e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 52 | 62 | 68 | 74 |
AMP PEAK 6(7P11.2) MUTATED | 13 | 31 | 12 | 12 |
AMP PEAK 6(7P11.2) WILD-TYPE | 39 | 31 | 56 | 62 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
AMP PEAK 6(7P11.2) MUTATED | 22 | 66 | 9 | 24 | 5 |
AMP PEAK 6(7P11.2) WILD-TYPE | 113 | 46 | 99 | 104 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
AMP PEAK 6(7P11.2) MUTATED | 19 | 65 | 10 | 32 |
AMP PEAK 6(7P11.2) WILD-TYPE | 116 | 48 | 115 | 106 |
P value = 0.00042 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 6(7P11.2) MUTATED | 44 | 37 | 32 | 13 |
AMP PEAK 6(7P11.2) WILD-TYPE | 93 | 70 | 151 | 69 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 6(7P11.2) MUTATED | 37 | 28 | 61 |
AMP PEAK 6(7P11.2) WILD-TYPE | 185 | 156 | 42 |
P value = 4e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
AMP PEAK 6(7P11.2) MUTATED | 66 | 26 | 33 |
AMP PEAK 6(7P11.2) WILD-TYPE | 119 | 135 | 126 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 6(7P11.2) MUTATED | 13 | 22 | 32 | 58 |
AMP PEAK 6(7P11.2) WILD-TYPE | 78 | 115 | 156 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
AMP PEAK 7(7Q31.2) MUTATED | 46 | 105 | 23 |
AMP PEAK 7(7Q31.2) WILD-TYPE | 126 | 15 | 198 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
AMP PEAK 7(7Q31.2) MUTATED | 77 | 59 | 29 | 9 |
AMP PEAK 7(7Q31.2) WILD-TYPE | 148 | 22 | 138 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
AMP PEAK 7(7Q31.2) MUTATED | 48 | 63 | 15 | 38 | 8 |
AMP PEAK 7(7Q31.2) WILD-TYPE | 87 | 49 | 93 | 90 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
AMP PEAK 7(7Q31.2) MUTATED | 44 | 61 | 20 | 47 |
AMP PEAK 7(7Q31.2) WILD-TYPE | 91 | 52 | 105 | 91 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 7(7Q31.2) MUTATED | 65 | 48 | 59 |
AMP PEAK 7(7Q31.2) WILD-TYPE | 157 | 136 | 44 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 7(7Q31.2) MUTATED | 24 | 35 | 57 | 55 |
AMP PEAK 7(7Q31.2) WILD-TYPE | 67 | 102 | 131 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
AMP PEAK 8(7Q32.3) MUTATED | 49 | 108 | 25 |
AMP PEAK 8(7Q32.3) WILD-TYPE | 123 | 12 | 196 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
AMP PEAK 8(7Q32.3) MUTATED | 82 | 60 | 30 | 10 |
AMP PEAK 8(7Q32.3) WILD-TYPE | 143 | 21 | 137 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
AMP PEAK 8(7Q32.3) MUTATED | 52 | 63 | 16 | 41 | 8 |
AMP PEAK 8(7Q32.3) WILD-TYPE | 83 | 49 | 92 | 87 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
AMP PEAK 8(7Q32.3) MUTATED | 47 | 61 | 21 | 51 |
AMP PEAK 8(7Q32.3) WILD-TYPE | 88 | 52 | 104 | 87 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 8(7Q32.3) MUTATED | 68 | 52 | 60 |
AMP PEAK 8(7Q32.3) WILD-TYPE | 154 | 132 | 43 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 8(7Q32.3) MUTATED | 28 | 37 | 59 | 55 |
AMP PEAK 8(7Q32.3) WILD-TYPE | 63 | 100 | 129 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
AMP PEAK 9(8Q24.13) MUTATED | 66 | 19 | 15 |
AMP PEAK 9(8Q24.13) WILD-TYPE | 106 | 101 | 206 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
AMP PEAK 9(8Q24.13) MUTATED | 82 | 4 | 10 | 4 |
AMP PEAK 9(8Q24.13) WILD-TYPE | 143 | 77 | 157 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
AMP PEAK 9(8Q24.13) MUTATED | 51 | 12 | 5 | 25 | 6 |
AMP PEAK 9(8Q24.13) WILD-TYPE | 84 | 100 | 103 | 103 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
AMP PEAK 9(8Q24.13) MUTATED | 52 | 12 | 7 | 28 |
AMP PEAK 9(8Q24.13) WILD-TYPE | 83 | 101 | 118 | 110 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 9(8Q24.13) MUTATED | 34 | 21 | 35 | 8 |
AMP PEAK 9(8Q24.13) WILD-TYPE | 57 | 116 | 153 | 81 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
AMP PEAK 11(10P15.3) MUTATED | 58 | 9 | 4 |
AMP PEAK 11(10P15.3) WILD-TYPE | 114 | 111 | 217 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
AMP PEAK 11(10P15.3) MUTATED | 65 | 3 | 0 | 3 |
AMP PEAK 11(10P15.3) WILD-TYPE | 160 | 78 | 167 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
AMP PEAK 11(10P15.3) MUTATED | 41 | 13 | 0 | 16 | 1 |
AMP PEAK 11(10P15.3) WILD-TYPE | 94 | 99 | 108 | 112 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
AMP PEAK 11(10P15.3) MUTATED | 40 | 13 | 0 | 18 |
AMP PEAK 11(10P15.3) WILD-TYPE | 95 | 100 | 125 | 120 |
P value = 0.00011 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 11(10P15.3) MUTATED | 27 | 16 | 21 | 6 |
AMP PEAK 11(10P15.3) WILD-TYPE | 64 | 121 | 167 | 83 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
AMP PEAK 13(12P13.32) MUTATED | 46 | 17 | 9 |
AMP PEAK 13(12P13.32) WILD-TYPE | 126 | 103 | 212 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
AMP PEAK 13(12P13.32) MUTATED | 55 | 9 | 5 | 3 |
AMP PEAK 13(12P13.32) WILD-TYPE | 170 | 72 | 162 | 37 |
P value = 0.00018 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
AMP PEAK 13(12P13.32) MUTATED | 30 | 21 | 4 | 13 | 4 |
AMP PEAK 13(12P13.32) WILD-TYPE | 105 | 91 | 104 | 115 | 24 |
P value = 4e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
AMP PEAK 13(12P13.32) MUTATED | 32 | 20 | 5 | 15 |
AMP PEAK 13(12P13.32) WILD-TYPE | 103 | 93 | 120 | 123 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
AMP PEAK 14(12Q14.1) MUTATED | 10 | 22 | 5 |
AMP PEAK 14(12Q14.1) WILD-TYPE | 162 | 98 | 216 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
AMP PEAK 14(12Q14.1) MUTATED | 13 | 19 | 4 | 1 |
AMP PEAK 14(12Q14.1) WILD-TYPE | 212 | 62 | 163 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
AMP PEAK 14(12Q14.1) MUTATED | 3 | 27 | 3 | 3 | 1 |
AMP PEAK 14(12Q14.1) WILD-TYPE | 132 | 85 | 105 | 125 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
AMP PEAK 14(12Q14.1) MUTATED | 3 | 26 | 4 | 4 |
AMP PEAK 14(12Q14.1) WILD-TYPE | 132 | 87 | 121 | 134 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 14(12Q14.1) MUTATED | 10 | 5 | 22 |
AMP PEAK 14(12Q14.1) WILD-TYPE | 212 | 179 | 81 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 14(12Q14.1) MUTATED | 6 | 5 | 7 | 19 |
AMP PEAK 14(12Q14.1) WILD-TYPE | 85 | 132 | 181 | 70 |
P value = 4e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
AMP PEAK 16(15Q26.3) MUTATED | 12 | 7 | 0 |
AMP PEAK 16(15Q26.3) WILD-TYPE | 160 | 113 | 221 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
AMP PEAK 18(19P13.3) MUTATED | 9 | 40 | 80 |
AMP PEAK 18(19P13.3) WILD-TYPE | 163 | 80 | 141 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
AMP PEAK 18(19P13.3) MUTATED | 19 | 27 | 80 | 3 |
AMP PEAK 18(19P13.3) WILD-TYPE | 206 | 54 | 87 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
AMP PEAK 18(19P13.3) MUTATED | 10 | 30 | 56 | 31 | 2 |
AMP PEAK 18(19P13.3) WILD-TYPE | 125 | 82 | 52 | 97 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
AMP PEAK 18(19P13.3) MUTATED | 8 | 31 | 58 | 32 |
AMP PEAK 18(19P13.3) WILD-TYPE | 127 | 82 | 67 | 106 |
P value = 0.00012 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 18(19P13.3) MUTATED | 24 | 23 | 45 | 37 |
AMP PEAK 18(19P13.3) WILD-TYPE | 113 | 84 | 138 | 45 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
AMP PEAK 19(19P13.2) MUTATED | 6 | 42 | 74 |
AMP PEAK 19(19P13.2) WILD-TYPE | 166 | 78 | 147 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
AMP PEAK 19(19P13.2) MUTATED | 12 | 30 | 77 | 3 |
AMP PEAK 19(19P13.2) WILD-TYPE | 213 | 51 | 90 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
AMP PEAK 19(19P13.2) MUTATED | 6 | 34 | 54 | 25 | 3 |
AMP PEAK 19(19P13.2) WILD-TYPE | 129 | 78 | 54 | 103 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
AMP PEAK 19(19P13.2) MUTATED | 6 | 33 | 57 | 26 |
AMP PEAK 19(19P13.2) WILD-TYPE | 129 | 80 | 68 | 112 |
P value = 0.00023 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 19(19P13.2) MUTATED | 26 | 21 | 39 | 36 |
AMP PEAK 19(19P13.2) WILD-TYPE | 111 | 86 | 144 | 46 |
P value = 0.00052 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 19(19P13.2) MUTATED | 9 | 41 | 43 | 29 |
AMP PEAK 19(19P13.2) WILD-TYPE | 82 | 96 | 145 | 60 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
AMP PEAK 20(XP11.22) MUTATED | 33 | 8 | 7 |
AMP PEAK 20(XP11.22) WILD-TYPE | 139 | 112 | 214 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
AMP PEAK 20(XP11.22) MUTATED | 41 | 5 | 1 | 1 |
AMP PEAK 20(XP11.22) WILD-TYPE | 184 | 76 | 166 | 39 |
P value = 8e-05 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
AMP PEAK 20(XP11.22) MUTATED | 22 | 11 | 1 | 14 |
AMP PEAK 20(XP11.22) WILD-TYPE | 113 | 102 | 124 | 124 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
AMP PEAK 21(XP11.22) MUTATED | 47 | 7 | 9 |
AMP PEAK 21(XP11.22) WILD-TYPE | 125 | 113 | 212 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
AMP PEAK 21(XP11.22) MUTATED | 54 | 6 | 1 | 2 |
AMP PEAK 21(XP11.22) WILD-TYPE | 171 | 75 | 166 | 38 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
AMP PEAK 21(XP11.22) MUTATED | 27 | 17 | 1 | 15 | 3 |
AMP PEAK 21(XP11.22) WILD-TYPE | 108 | 95 | 107 | 113 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
AMP PEAK 21(XP11.22) MUTATED | 30 | 16 | 1 | 16 |
AMP PEAK 21(XP11.22) WILD-TYPE | 105 | 97 | 124 | 122 |
P value = 0.00033 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 21(XP11.22) MUTATED | 22 | 19 | 20 | 1 |
AMP PEAK 21(XP11.22) WILD-TYPE | 115 | 88 | 163 | 81 |
P value = 0.00045 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 9 | 10 | 8 |
DEL PEAK 1(1P36.32) MUTATED | 0 | 8 | 2 |
DEL PEAK 1(1P36.32) WILD-TYPE | 9 | 2 | 6 |
P value = 0.00015 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 7 | 7 | 6 |
DEL PEAK 1(1P36.32) MUTATED | 0 | 1 | 7 | 2 |
DEL PEAK 1(1P36.32) WILD-TYPE | 7 | 6 | 0 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 1(1P36.32) MUTATED | 10 | 29 | 167 |
DEL PEAK 1(1P36.32) WILD-TYPE | 162 | 91 | 54 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 1(1P36.32) MUTATED | 11 | 19 | 166 | 10 |
DEL PEAK 1(1P36.32) WILD-TYPE | 214 | 62 | 1 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
DEL PEAK 1(1P36.32) MUTATED | 5 | 22 | 107 | 58 | 14 |
DEL PEAK 1(1P36.32) WILD-TYPE | 130 | 90 | 1 | 70 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
DEL PEAK 1(1P36.32) MUTATED | 7 | 21 | 123 | 55 |
DEL PEAK 1(1P36.32) WILD-TYPE | 128 | 92 | 2 | 83 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 1(1P36.32) MUTATED | 33 | 13 | 92 | 68 |
DEL PEAK 1(1P36.32) WILD-TYPE | 104 | 94 | 91 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 1(1P36.32) MUTATED | 84 | 101 | 21 |
DEL PEAK 1(1P36.32) WILD-TYPE | 138 | 83 | 82 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 1(1P36.32) MUTATED | 44 | 83 | 79 |
DEL PEAK 1(1P36.32) WILD-TYPE | 141 | 78 | 80 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 1(1P36.32) MUTATED | 7 | 83 | 95 | 21 |
DEL PEAK 1(1P36.32) WILD-TYPE | 84 | 54 | 93 | 68 |
P value = 0.00017 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 7 | 7 | 6 |
DEL PEAK 2(1P32.3) MUTATED | 0 | 1 | 7 | 2 |
DEL PEAK 2(1P32.3) WILD-TYPE | 7 | 6 | 0 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 2(1P32.3) MUTATED | 6 | 24 | 166 |
DEL PEAK 2(1P32.3) WILD-TYPE | 166 | 96 | 55 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 2(1P32.3) MUTATED | 5 | 15 | 166 | 10 |
DEL PEAK 2(1P32.3) WILD-TYPE | 220 | 66 | 1 | 30 |
P value = 0.00057 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 52 | 62 | 68 | 74 |
DEL PEAK 2(1P32.3) MUTATED | 8 | 16 | 28 | 35 |
DEL PEAK 2(1P32.3) WILD-TYPE | 44 | 46 | 40 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
DEL PEAK 2(1P32.3) MUTATED | 4 | 17 | 107 | 55 | 13 |
DEL PEAK 2(1P32.3) WILD-TYPE | 131 | 95 | 1 | 73 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
DEL PEAK 2(1P32.3) MUTATED | 5 | 17 | 123 | 51 |
DEL PEAK 2(1P32.3) WILD-TYPE | 130 | 96 | 2 | 87 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 2(1P32.3) MUTATED | 33 | 10 | 86 | 67 |
DEL PEAK 2(1P32.3) WILD-TYPE | 104 | 97 | 97 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 2(1P32.3) MUTATED | 82 | 96 | 18 |
DEL PEAK 2(1P32.3) WILD-TYPE | 140 | 88 | 85 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 2(1P32.3) MUTATED | 39 | 82 | 75 |
DEL PEAK 2(1P32.3) WILD-TYPE | 146 | 79 | 84 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 2(1P32.3) MUTATED | 7 | 82 | 90 | 17 |
DEL PEAK 2(1P32.3) WILD-TYPE | 84 | 55 | 98 | 72 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 4(2Q37.3) MUTATED | 44 | 22 | 11 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 128 | 98 | 210 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 4(2Q37.3) MUTATED | 64 | 4 | 6 | 3 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 161 | 77 | 161 | 37 |
P value = 0.00024 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
DEL PEAK 4(2Q37.3) MUTATED | 33 | 22 | 6 | 13 | 3 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 102 | 90 | 102 | 115 | 25 |
P value = 7e-05 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
DEL PEAK 4(2Q37.3) MUTATED | 31 | 23 | 6 | 17 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 104 | 90 | 119 | 121 |
P value = 0.00015 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 5(3P21.31) MUTATED | 26 | 15 | 8 |
DEL PEAK 5(3P21.31) WILD-TYPE | 146 | 105 | 213 |
P value = 0.00054 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 5(3P21.31) MUTATED | 12 | 21 | 8 | 8 |
DEL PEAK 5(3P21.31) WILD-TYPE | 125 | 86 | 175 | 74 |
P value = 0.00012 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 6(3Q13.31) MUTATED | 25 | 8 | 6 |
DEL PEAK 6(3Q13.31) WILD-TYPE | 147 | 112 | 215 |
P value = 0.00057 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 6(3Q13.31) MUTATED | 16 | 6 | 17 |
DEL PEAK 6(3Q13.31) WILD-TYPE | 206 | 178 | 86 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 7(3Q29) MUTATED | 33 | 10 | 4 |
DEL PEAK 7(3Q29) WILD-TYPE | 139 | 110 | 217 |
P value = 0.00042 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 7(3Q29) MUTATED | 31 | 8 | 4 | 4 |
DEL PEAK 7(3Q29) WILD-TYPE | 194 | 73 | 163 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 8(4Q34.3) MUTATED | 78 | 5 | 51 | 4 |
DEL PEAK 8(4Q34.3) WILD-TYPE | 147 | 76 | 116 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 9(5P15.33) MUTATED | 33 | 12 | 5 |
DEL PEAK 9(5P15.33) WILD-TYPE | 139 | 108 | 216 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 9(5P15.33) MUTATED | 37 | 9 | 3 | 1 |
DEL PEAK 9(5P15.33) WILD-TYPE | 188 | 72 | 164 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 10(5Q34) MUTATED | 49 | 7 | 8 |
DEL PEAK 10(5Q34) WILD-TYPE | 123 | 113 | 213 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 10(5Q34) MUTATED | 52 | 7 | 2 | 3 |
DEL PEAK 10(5Q34) WILD-TYPE | 173 | 74 | 165 | 37 |
P value = 8e-05 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
DEL PEAK 10(5Q34) MUTATED | 19 | 24 | 2 | 13 | 5 |
DEL PEAK 10(5Q34) WILD-TYPE | 116 | 88 | 106 | 115 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
DEL PEAK 10(5Q34) MUTATED | 20 | 25 | 2 | 16 |
DEL PEAK 10(5Q34) WILD-TYPE | 115 | 88 | 123 | 122 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 10(5Q34) MUTATED | 15 | 28 | 18 | 3 |
DEL PEAK 10(5Q34) WILD-TYPE | 122 | 79 | 165 | 79 |
P value = 0.00016 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 11(6P25.3) MUTATED | 25 | 17 | 8 |
DEL PEAK 11(6P25.3) WILD-TYPE | 147 | 103 | 213 |
P value = 6e-05 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 12(6Q22.31) MUTATED | 29 | 31 | 18 |
DEL PEAK 12(6Q22.31) WILD-TYPE | 143 | 89 | 203 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 12(6Q22.31) MUTATED | 49 | 16 | 8 | 5 |
DEL PEAK 12(6Q22.31) WILD-TYPE | 176 | 65 | 159 | 35 |
P value = 0.00053 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
DEL PEAK 12(6Q22.31) MUTATED | 27 | 25 | 7 | 18 |
DEL PEAK 12(6Q22.31) WILD-TYPE | 108 | 88 | 118 | 120 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 12(6Q22.31) MUTATED | 24 | 11 | 18 | 22 |
DEL PEAK 12(6Q22.31) WILD-TYPE | 67 | 126 | 170 | 67 |
P value = 3e-04 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 13(6Q24.3) MUTATED | 32 | 30 | 20 |
DEL PEAK 13(6Q24.3) WILD-TYPE | 140 | 90 | 201 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 13(6Q24.3) MUTATED | 53 | 16 | 8 | 5 |
DEL PEAK 13(6Q24.3) WILD-TYPE | 172 | 65 | 159 | 35 |
P value = 9e-05 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
DEL PEAK 13(6Q24.3) MUTATED | 31 | 25 | 7 | 18 |
DEL PEAK 13(6Q24.3) WILD-TYPE | 104 | 88 | 118 | 120 |
P value = 0.00013 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 13(6Q24.3) MUTATED | 36 | 20 | 20 | 5 |
DEL PEAK 13(6Q24.3) WILD-TYPE | 101 | 87 | 163 | 77 |
P value = 4e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 13(6Q24.3) MUTATED | 27 | 12 | 19 | 21 |
DEL PEAK 13(6Q24.3) WILD-TYPE | 64 | 125 | 169 | 68 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 15(8Q24.3) MUTATED | 15 | 13 | 1 |
DEL PEAK 15(8Q24.3) WILD-TYPE | 157 | 107 | 220 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 15(8Q24.3) MUTATED | 17 | 11 | 0 | 1 |
DEL PEAK 15(8Q24.3) WILD-TYPE | 208 | 70 | 167 | 39 |
P value = 0.00059 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
DEL PEAK 15(8Q24.3) MUTATED | 10 | 12 | 0 | 7 |
DEL PEAK 15(8Q24.3) WILD-TYPE | 125 | 101 | 125 | 131 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 16(9P23) MUTATED | 55 | 57 | 38 |
DEL PEAK 16(9P23) WILD-TYPE | 117 | 63 | 183 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 16(9P23) MUTATED | 79 | 35 | 28 | 8 |
DEL PEAK 16(9P23) WILD-TYPE | 146 | 46 | 139 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 17(9P21.3) MUTATED | 63 | 77 | 36 |
DEL PEAK 17(9P21.3) WILD-TYPE | 109 | 43 | 185 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 17(9P21.3) MUTATED | 82 | 59 | 27 | 8 |
DEL PEAK 17(9P21.3) WILD-TYPE | 143 | 22 | 140 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 52 | 62 | 68 | 74 |
DEL PEAK 17(9P21.3) MUTATED | 12 | 38 | 26 | 18 |
DEL PEAK 17(9P21.3) WILD-TYPE | 40 | 24 | 42 | 56 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 131 | 58 |
DEL PEAK 17(9P21.3) MUTATED | 11 | 65 | 18 |
DEL PEAK 17(9P21.3) WILD-TYPE | 56 | 66 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
DEL PEAK 17(9P21.3) MUTATED | 40 | 66 | 19 | 44 | 7 |
DEL PEAK 17(9P21.3) WILD-TYPE | 95 | 46 | 89 | 84 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
DEL PEAK 17(9P21.3) MUTATED | 44 | 65 | 23 | 44 |
DEL PEAK 17(9P21.3) WILD-TYPE | 91 | 48 | 102 | 94 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 17(9P21.3) MUTATED | 59 | 56 | 60 |
DEL PEAK 17(9P21.3) WILD-TYPE | 163 | 128 | 43 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 17(9P21.3) MUTATED | 31 | 28 | 54 | 61 |
DEL PEAK 17(9P21.3) WILD-TYPE | 60 | 109 | 134 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 18(10Q26.3) MUTATED | 53 | 85 | 13 |
DEL PEAK 18(10Q26.3) WILD-TYPE | 119 | 35 | 208 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 18(10Q26.3) MUTATED | 64 | 72 | 8 | 7 |
DEL PEAK 18(10Q26.3) WILD-TYPE | 161 | 9 | 159 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 52 | 62 | 68 | 74 |
DEL PEAK 18(10Q26.3) MUTATED | 13 | 35 | 14 | 11 |
DEL PEAK 18(10Q26.3) WILD-TYPE | 39 | 27 | 54 | 63 |
P value = 0.00026 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 131 | 58 |
DEL PEAK 18(10Q26.3) MUTATED | 11 | 52 | 10 |
DEL PEAK 18(10Q26.3) WILD-TYPE | 56 | 79 | 48 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
DEL PEAK 18(10Q26.3) MUTATED | 32 | 81 | 4 | 26 | 7 |
DEL PEAK 18(10Q26.3) WILD-TYPE | 103 | 31 | 104 | 102 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
DEL PEAK 18(10Q26.3) MUTATED | 34 | 81 | 8 | 27 |
DEL PEAK 18(10Q26.3) WILD-TYPE | 101 | 32 | 117 | 111 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 18(10Q26.3) MUTATED | 55 | 46 | 39 | 11 |
DEL PEAK 18(10Q26.3) WILD-TYPE | 82 | 61 | 144 | 71 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 18(10Q26.3) MUTATED | 49 | 28 | 74 |
DEL PEAK 18(10Q26.3) WILD-TYPE | 173 | 156 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 18(10Q26.3) MUTATED | 94 | 22 | 35 |
DEL PEAK 18(10Q26.3) WILD-TYPE | 91 | 139 | 124 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 18(10Q26.3) MUTATED | 28 | 18 | 33 | 72 |
DEL PEAK 18(10Q26.3) WILD-TYPE | 63 | 119 | 155 | 17 |
P value = 0.00051 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 7 | 7 | 6 |
DEL PEAK 19(11P15.5) MUTATED | 1 | 6 | 0 | 0 |
DEL PEAK 19(11P15.5) WILD-TYPE | 6 | 1 | 7 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 19(11P15.5) MUTATED | 74 | 20 | 10 |
DEL PEAK 19(11P15.5) WILD-TYPE | 98 | 100 | 211 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 19(11P15.5) MUTATED | 85 | 14 | 0 | 5 |
DEL PEAK 19(11P15.5) WILD-TYPE | 140 | 67 | 167 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
DEL PEAK 19(11P15.5) MUTATED | 39 | 35 | 0 | 23 | 6 |
DEL PEAK 19(11P15.5) WILD-TYPE | 96 | 77 | 108 | 105 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
DEL PEAK 19(11P15.5) MUTATED | 38 | 38 | 0 | 27 |
DEL PEAK 19(11P15.5) WILD-TYPE | 97 | 75 | 125 | 111 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 19(11P15.5) MUTATED | 23 | 40 | 33 | 8 |
DEL PEAK 19(11P15.5) WILD-TYPE | 114 | 67 | 150 | 74 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 20(11P15.1) MUTATED | 52 | 15 | 5 |
DEL PEAK 20(11P15.1) WILD-TYPE | 120 | 105 | 216 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 20(11P15.1) MUTATED | 52 | 14 | 1 | 5 |
DEL PEAK 20(11P15.1) WILD-TYPE | 173 | 67 | 166 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
DEL PEAK 20(11P15.1) MUTATED | 17 | 35 | 1 | 12 | 6 |
DEL PEAK 20(11P15.1) WILD-TYPE | 118 | 77 | 107 | 116 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
DEL PEAK 20(11P15.1) MUTATED | 20 | 38 | 1 | 12 |
DEL PEAK 20(11P15.1) WILD-TYPE | 115 | 75 | 124 | 126 |
P value = 5e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 20(11P15.1) MUTATED | 16 | 32 | 19 | 5 |
DEL PEAK 20(11P15.1) WILD-TYPE | 121 | 75 | 164 | 77 |
P value = 3e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 20(11P15.1) MUTATED | 27 | 16 | 29 |
DEL PEAK 20(11P15.1) WILD-TYPE | 195 | 168 | 74 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 22(12Q12) MUTATED | 53 | 7 | 12 |
DEL PEAK 22(12Q12) WILD-TYPE | 119 | 113 | 209 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 22(12Q12) MUTATED | 57 | 5 | 8 | 2 |
DEL PEAK 22(12Q12) WILD-TYPE | 168 | 76 | 159 | 38 |
P value = 7e-05 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 7 | 7 | 6 |
DEL PEAK 23(13Q14.2) MUTATED | 2 | 7 | 0 | 0 |
DEL PEAK 23(13Q14.2) WILD-TYPE | 5 | 0 | 7 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 23(13Q14.2) MUTATED | 73 | 36 | 33 |
DEL PEAK 23(13Q14.2) WILD-TYPE | 99 | 84 | 188 |
P value = 6e-05 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 23(13Q14.2) MUTATED | 80 | 28 | 27 | 7 |
DEL PEAK 23(13Q14.2) WILD-TYPE | 145 | 53 | 140 | 33 |
P value = 2e-04 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
DEL PEAK 23(13Q14.2) MUTATED | 40 | 47 | 16 | 32 | 7 |
DEL PEAK 23(13Q14.2) WILD-TYPE | 95 | 65 | 92 | 96 | 21 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
DEL PEAK 23(13Q14.2) MUTATED | 43 | 47 | 19 | 33 |
DEL PEAK 23(13Q14.2) WILD-TYPE | 92 | 66 | 106 | 105 |
P value = 6e-05 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 7 | 7 | 6 |
DEL PEAK 24(13Q14.2) MUTATED | 2 | 7 | 0 | 0 |
DEL PEAK 24(13Q14.2) WILD-TYPE | 5 | 0 | 7 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 24(13Q14.2) MUTATED | 74 | 37 | 33 |
DEL PEAK 24(13Q14.2) WILD-TYPE | 98 | 83 | 188 |
P value = 3e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 24(13Q14.2) MUTATED | 81 | 29 | 27 | 7 |
DEL PEAK 24(13Q14.2) WILD-TYPE | 144 | 52 | 140 | 33 |
P value = 0.00014 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
DEL PEAK 24(13Q14.2) MUTATED | 41 | 48 | 16 | 32 | 7 |
DEL PEAK 24(13Q14.2) WILD-TYPE | 94 | 64 | 92 | 96 | 21 |
P value = 3e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
DEL PEAK 24(13Q14.2) MUTATED | 44 | 48 | 19 | 33 |
DEL PEAK 24(13Q14.2) WILD-TYPE | 91 | 65 | 106 | 105 |
P value = 1e-04 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 25(13Q34) MUTATED | 52 | 30 | 28 |
DEL PEAK 25(13Q34) WILD-TYPE | 120 | 90 | 193 |
P value = 0.00054 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
DEL PEAK 26(14Q24.3) MUTATED | 25 | 44 | 23 | 21 | 7 |
DEL PEAK 26(14Q24.3) WILD-TYPE | 110 | 68 | 85 | 107 | 21 |
P value = 9e-05 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
DEL PEAK 26(14Q24.3) MUTATED | 32 | 44 | 24 | 20 |
DEL PEAK 26(14Q24.3) WILD-TYPE | 103 | 69 | 101 | 118 |
P value = 0.00031 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 26(14Q24.3) MUTATED | 51 | 21 | 32 | 16 |
DEL PEAK 26(14Q24.3) WILD-TYPE | 86 | 86 | 151 | 66 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 28(19Q13.41) MUTATED | 40 | 35 | 192 |
DEL PEAK 28(19Q13.41) WILD-TYPE | 132 | 85 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 28(19Q13.41) MUTATED | 78 | 12 | 167 | 10 |
DEL PEAK 28(19Q13.41) WILD-TYPE | 147 | 69 | 0 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
DEL PEAK 28(19Q13.41) MUTATED | 40 | 33 | 108 | 73 | 12 |
DEL PEAK 28(19Q13.41) WILD-TYPE | 95 | 79 | 0 | 55 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
DEL PEAK 28(19Q13.41) MUTATED | 39 | 31 | 124 | 72 |
DEL PEAK 28(19Q13.41) WILD-TYPE | 96 | 82 | 1 | 66 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 28(19Q13.41) MUTATED | 50 | 36 | 107 | 74 |
DEL PEAK 28(19Q13.41) WILD-TYPE | 87 | 71 | 76 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 28(19Q13.41) MUTATED | 129 | 118 | 20 |
DEL PEAK 28(19Q13.41) WILD-TYPE | 93 | 66 | 83 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 28(19Q13.41) MUTATED | 61 | 110 | 95 |
DEL PEAK 28(19Q13.41) WILD-TYPE | 124 | 51 | 64 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 28(19Q13.41) MUTATED | 32 | 105 | 113 | 16 |
DEL PEAK 28(19Q13.41) WILD-TYPE | 59 | 32 | 75 | 73 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 29(19Q13.42) MUTATED | 42 | 38 | 198 |
DEL PEAK 29(19Q13.42) WILD-TYPE | 130 | 82 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 29(19Q13.42) MUTATED | 88 | 13 | 167 | 10 |
DEL PEAK 29(19Q13.42) WILD-TYPE | 137 | 68 | 0 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
DEL PEAK 29(19Q13.42) MUTATED | 49 | 35 | 108 | 73 | 12 |
DEL PEAK 29(19Q13.42) WILD-TYPE | 86 | 77 | 0 | 55 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
DEL PEAK 29(19Q13.42) MUTATED | 46 | 33 | 124 | 74 |
DEL PEAK 29(19Q13.42) WILD-TYPE | 89 | 80 | 1 | 64 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 29(19Q13.42) MUTATED | 56 | 40 | 106 | 76 |
DEL PEAK 29(19Q13.42) WILD-TYPE | 81 | 67 | 77 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 29(19Q13.42) MUTATED | 137 | 119 | 22 |
DEL PEAK 29(19Q13.42) WILD-TYPE | 85 | 65 | 81 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 29(19Q13.42) MUTATED | 69 | 113 | 95 |
DEL PEAK 29(19Q13.42) WILD-TYPE | 116 | 48 | 64 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 29(19Q13.42) MUTATED | 36 | 109 | 115 | 17 |
DEL PEAK 29(19Q13.42) WILD-TYPE | 55 | 28 | 73 | 72 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 120 | 221 |
DEL PEAK 30(22Q13.31) MUTATED | 34 | 35 | 8 |
DEL PEAK 30(22Q13.31) WILD-TYPE | 138 | 85 | 213 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 225 | 81 | 167 | 40 |
DEL PEAK 30(22Q13.31) MUTATED | 39 | 29 | 4 | 5 |
DEL PEAK 30(22Q13.31) WILD-TYPE | 186 | 52 | 163 | 35 |
P value = 0.00029 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 52 | 62 | 68 | 74 |
DEL PEAK 30(22Q13.31) MUTATED | 4 | 21 | 8 | 6 |
DEL PEAK 30(22Q13.31) WILD-TYPE | 48 | 41 | 60 | 68 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 135 | 112 | 108 | 128 | 28 |
DEL PEAK 30(22Q13.31) MUTATED | 15 | 40 | 2 | 14 | 5 |
DEL PEAK 30(22Q13.31) WILD-TYPE | 120 | 72 | 106 | 114 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 113 | 125 | 138 |
DEL PEAK 30(22Q13.31) MUTATED | 17 | 39 | 4 | 16 |
DEL PEAK 30(22Q13.31) WILD-TYPE | 118 | 74 | 121 | 122 |
P value = 3e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 30(22Q13.31) MUTATED | 27 | 18 | 32 |
DEL PEAK 30(22Q13.31) WILD-TYPE | 195 | 166 | 71 |
P value = 4e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 30(22Q13.31) MUTATED | 11 | 18 | 18 | 29 |
DEL PEAK 30(22Q13.31) WILD-TYPE | 80 | 119 | 170 | 60 |
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Copy number data file = transformed.cor.cli.txt
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Molecular subtype file = LGG-TP.transferedmergedcluster.txt
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Number of patients = 513
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Number of significantly focal cnvs = 52
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Number of molecular subtypes = 12
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Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.