Clinical Features MRNA_CNMF MRNA_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q amp_1q22 42 (8%) 471 NA NA NA NA 0.00056999 0.234 0.0074399 1 0.2495 1 0.88299 1 0.00154 0.591 0.0143 1 0.57374 1 0.089139 1 0.15418 1 0.31298 1 amp_1q32.1 43 (8%) 470 NA NA NA NA 9.9999e-06 0.00604 9.9999e-06 0.00604 0.16396 1 0.35399 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.25205 1 2e-05 0.00944 0.00137 0.534 9.9999e-06 0.00604 amp_2p24.3 24 (5%) 489 0.61782 1 0.58305 1 0.00243 0.904 0.03333 1 0.49134 1 1 1 0.02452 1 0.01423 1 0.72049 1 0.03438 1 0.44043 1 0.11524 1 amp_3q26.33 21 (4%) 492 1 1 0.58163 1 9.9999e-06 0.00604 0.00122 0.477 0.14745 1 0.84931 1 0.00071999 0.29 0.00028 0.119 0.00146 0.565 0.01834 1 0.052859 1 0.00359 1 amp_4q12 30 (6%) 483 1 1 0.04216 1 2e-04 0.0858 0.00018 0.0776 0.0087199 1 0.27783 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.00339 1 0.00013 0.0569 0.94387 1 0.00379 1 amp_7p11.2 128 (25%) 385 0.76348 1 0.40386 1 9.9999e-06 0.00604 9.9999e-06 0.00604 5e-05 0.0226 0.01254 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.00042 0.176 9.9999e-06 0.00604 4e-05 0.0183 9.9999e-06 0.00604 amp_7q31.2 174 (34%) 339 1 1 0.81225 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.0041 1 0.18779 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.01116 1 9.9999e-06 0.00604 0.0087899 1 9.9999e-06 0.00604 amp_7q32.3 182 (35%) 331 0.6974 1 1 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.0067499 1 0.1662 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.054639 1 9.9999e-06 0.00604 0.02219 1 9.9999e-06 0.00604 amp_8q24.13 100 (19%) 413 0.36856 1 0.23927 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.0415 1 0.48535 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.02887 1 0.00095999 0.382 0.11249 1 2e-05 0.00944 amp_9q34.3 46 (9%) 467 0.51054 1 0.88358 1 0.094819 1 0.04912 1 0.20891 1 0.76124 1 0.080209 1 0.01407 1 0.20077 1 0.085749 1 0.28251 1 0.28543 1 amp_10p15.3 71 (14%) 442 0.52636 1 0.083319 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.02927 1 0.13477 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.00105 0.416 0.077299 1 0.33305 1 0.00011 0.0485 amp_11q24.1 87 (17%) 426 0.071449 1 0.11967 1 0.61349 1 0.0112 1 0.054189 1 0.0294 1 0.070309 1 0.065349 1 0.75978 1 0.11528 1 0.8526 1 0.04398 1 amp_12p13.32 72 (14%) 441 0.86503 1 0.097019 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.11363 1 0.19075 1 0.00018 0.0776 4e-05 0.0183 0.01013 1 0.0064699 1 0.02428 1 0.085289 1 amp_12q14.1 37 (7%) 476 NA NA NA NA 9.9999e-06 0.00604 2e-05 0.00944 0.01566 1 0.72885 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.0028 1 9.9999e-06 0.00604 0.04267 1 9.9999e-06 0.00604 amp_13q34 22 (4%) 491 NA NA NA NA 0.00151 0.583 0.00137 0.534 0.18687 1 0.71841 1 0.04344 1 0.0095299 1 0.29608 1 0.68844 1 0.96151 1 0.050359 1 amp_15q26.3 19 (4%) 494 1 1 0.04319 1 4e-05 0.0183 0.00095999 0.382 0.21981 1 0.60553 1 0.04405 1 0.0085799 1 0.49694 1 0.28372 1 0.59212 1 0.18991 1 amp_17q25.1 44 (9%) 469 NA NA NA NA 0.054339 1 0.35955 1 0.33052 1 0.44004 1 0.059529 1 0.069479 1 0.15009 1 0.56413 1 0.18662 1 0.56289 1 amp_19p13.3 129 (25%) 384 0.074999 1 0.1487 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.8837 1 0.579 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.00012 0.0528 0.15678 1 0.04568 1 0.00082999 0.333 amp_19p13.2 122 (24%) 391 0.074919 1 0.1498 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.27611 1 0.20075 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.00023 0.0982 0.14174 1 0.04191 1 0.00051999 0.216 amp_xp11.22 48 (9%) 465 0.64914 1 1 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.31851 1 0.73022 1 0.00152 0.585 7.9999e-05 0.0357 0.056099 1 0.59833 1 0.32851 1 0.10834 1 amp_xp11.22 63 (12%) 450 0.64936 1 1 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.02653 1 0.3901 1 2e-05 0.00944 9.9999e-06 0.00604 0.00033 0.139 0.35184 1 0.074099 1 0.0094599 1 del_1p36.32 206 (40%) 307 0.00045 0.188 0.00015 0.0652 9.9999e-06 0.00604 9.9999e-06 0.00604 0.00066999 0.273 0.8461 1 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 del_1p32.3 196 (38%) 317 0.02883 1 0.00017 0.0734 9.9999e-06 0.00604 9.9999e-06 0.00604 0.00056999 0.234 0.61413 1 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 del_1q43 31 (6%) 482 NA NA NA NA 0.31529 1 0.0097399 1 0.10098 1 0.53473 1 0.02805 1 0.01318 1 0.22817 1 0.75926 1 0.79297 1 0.30158 1 del_2q37.3 77 (15%) 436 0.36683 1 0.01281 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.00472 1 0.0201 1 0.00024 0.102 6.9999e-05 0.0314 0.0148 1 0.14122 1 0.10252 1 0.082459 1 del_3p21.31 49 (10%) 464 1 1 0.0068399 1 0.00015 0.0652 0.00199 0.748 0.00235 0.877 0.26334 1 0.02312 1 0.0060499 1 0.00053999 0.223 0.00232 0.868 0.7293 1 0.050059 1 del_3q13.31 39 (8%) 474 0.17502 1 0.88099 1 0.00012 0.0528 0.00381 1 0.34139 1 0.17436 1 0.16215 1 0.03167 1 0.1559 1 0.00056999 0.234 0.57363 1 0.11278 1 del_3q29 47 (9%) 466 0.17509 1 0.88159 1 9.9999e-06 0.00604 0.00042 0.176 0.40466 1 0.92064 1 0.00452 1 0.00112 0.442 0.12806 1 0.0047 1 0.69169 1 0.17099 1 del_4q34.3 138 (27%) 375 1 1 0.35655 1 0.01285 1 9.9999e-06 0.00604 0.16526 1 0.22482 1 0.054249 1 0.072549 1 0.03046 1 0.03758 1 0.00121 0.474 0.0058699 1 del_5p15.33 50 (10%) 463 1 1 0.067919 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.86477 1 0.58074 1 0.00472 1 0.00067999 0.276 0.00192 0.724 0.20458 1 0.94674 1 0.44087 1 del_5q34 64 (12%) 449 0.44416 1 0.23543 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.16255 1 1 1 7.9999e-05 0.0357 9.9999e-06 0.00604 2e-05 0.00944 0.14603 1 0.61273 1 0.66602 1 del_6p25.3 50 (10%) 463 NA NA NA NA 0.00016 0.0693 0.04244 1 0.23087 1 0.92642 1 0.068419 1 0.1128 1 0.41332 1 0.25263 1 0.14407 1 0.086409 1 del_6q22.31 78 (15%) 435 0.61715 1 0.57935 1 5.9999e-05 0.0271 2e-05 0.00944 0.11481 1 0.50896 1 0.0051399 1 0.00052999 0.219 0.00074999 0.301 0.12102 1 0.0063999 1 2e-05 0.00944 del_6q24.3 82 (16%) 431 0.17135 1 0.27956 1 3e-04 0.127 9.9999e-06 0.00604 0.098869 1 0.61977 1 0.00145 0.563 8.9999e-05 0.04 0.00013 0.0569 0.1639 1 0.02133 1 4e-05 0.0183 del_7p22.3 23 (4%) 490 NA NA NA NA 0.02539 1 0.12262 1 0.256 1 0.35491 1 0.57633 1 0.58153 1 0.50295 1 0.095349 1 0.73289 1 0.35438 1 del_8q24.3 29 (6%) 484 NA NA NA NA 9.9999e-06 0.00604 9.9999e-06 0.00604 0.92741 1 0.464 1 0.00165 0.63 0.00058999 0.241 0.00411 1 0.00329 1 0.16622 1 0.0314 1 del_9p23 150 (29%) 363 0.44581 1 0.65746 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.03955 1 0.0025 0.927 0.01325 1 0.02096 1 0.91737 1 0.11441 1 0.41048 1 0.00278 1 del_9p21.3 176 (34%) 337 0.33484 1 0.062459 1 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 2e-05 0.00944 9.9999e-06 0.00604 9.9999e-06 0.00604 0.25068 1 9.9999e-06 0.00604 0.00083999 0.336 9.9999e-06 0.00604 del_10q26.3 151 (29%) 362 0.083779 1 0.70531 1 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 0.00026 0.11 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 del_11p15.5 104 (20%) 409 0.64411 1 0.00050999 0.212 9.9999e-06 0.00604 9.9999e-06 0.00604 0.14566 1 0.63178 1 9.9999e-06 0.00604 9.9999e-06 0.00604 2e-05 0.00944 0.00474 1 0.99001 1 0.88755 1 del_11p15.1 72 (14%) 441 1 1 0.03095 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.01258 1 0.79213 1 9.9999e-06 0.00604 9.9999e-06 0.00604 5e-05 0.0226 3e-05 0.0139 0.87429 1 0.03356 1 del_12p13.1 38 (7%) 475 NA NA NA NA 0.00069999 0.283 0.00184 0.697 0.1521 1 1 1 0.0076199 1 0.0133 1 0.057539 1 0.0432 1 0.95539 1 0.25185 1 del_12q12 72 (14%) 441 1 1 0.15124 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.91162 1 0.28362 1 0.0064499 1 0.00338 1 0.01332 1 0.49724 1 0.90944 1 0.96298 1 del_13q14.2 142 (28%) 371 0.17943 1 6.9999e-05 0.0314 9.9999e-06 0.00604 5.9999e-05 0.0271 0.03427 1 0.60505 1 2e-04 0.0858 2e-05 0.00944 0.01835 1 0.0057199 1 0.47503 1 0.41267 1 del_13q14.2 144 (28%) 369 0.18147 1 5.9999e-05 0.0271 9.9999e-06 0.00604 3e-05 0.0139 0.0327 1 0.70888 1 0.00014 0.061 3e-05 0.0139 0.01619 1 0.00337 1 0.43278 1 0.3607 1 del_13q34 110 (21%) 403 0.50645 1 0.15074 1 9.9999e-05 0.0442 0.01191 1 0.085469 1 0.76047 1 0.0098399 1 0.00189 0.714 0.02583 1 0.00313 1 0.3111 1 0.17671 1 del_14q24.3 121 (24%) 392 0.30403 1 0.097689 1 0.00482 1 0.01221 1 0.00159 0.609 0.03593 1 0.00053999 0.223 8.9999e-05 0.04 0.00031 0.131 0.0046 1 0.00169 0.642 0.00112 0.442 del_18q23 78 (15%) 435 0.32215 1 0.32941 1 0.45889 1 0.00332 1 0.46177 1 0.075119 1 0.39906 1 0.079179 1 0.34647 1 0.61822 1 0.52984 1 0.89912 1 del_19q13.41 267 (52%) 246 0.03378 1 0.01004 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.00091999 0.367 0.18516 1 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 del_19q13.42 278 (54%) 235 0.03621 1 0.02131 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.00229 0.859 0.57482 1 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 9.9999e-06 0.00604 del_22q13.31 77 (15%) 436 0.25194 1 0.04216 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.00029 0.123 0.01191 1 9.9999e-06 0.00604 9.9999e-06 0.00604 0.03527 1 3e-05 0.0139 0.00165 0.63 4e-05 0.0183 del_xq21.1 78 (15%) 435 0.84013 1 0.26742 1 0.19256 1 0.052399 1 0.052459 1 0.1538 1 0.0075599 1 0.00067999 0.276 0.00119 0.468 0.3558 1 0.11788 1 0.15639 1