Clinical Features CN_CNMF METHLYATION_CNMF MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nMutated (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q TP53 62 (31%) 136 0.0068099 0.865 0.47961 1 0.00171 0.226 0.44712 1 0.01941 1 0.00062999 0.0844 0.23369 1 0.01187 1 CTNNB1 51 (26%) 147 0.03824 1 0.00029 0.0394 9.9999e-06 0.00142 9.9999e-06 0.00142 0.04493 1 9.9999e-06 0.00142 0.00047 0.0634 9.9999e-06 0.00142 RB1 15 (8%) 183 0.72687 1 0.00073999 0.0984 0.02475 1 0.14946 1 0.21455 1 0.38886 1 0.21401 1 0.29925 1 AXIN1 9 (5%) 189 0.27678 1 0.47033 1 0.18031 1 0.35779 1 0.0047 0.606 0.45583 1 0.0054799 0.701 0.69445 1 BAP1 10 (5%) 188 0.70529 1 0.00374 0.486 0.00025 0.0342 0.00193 0.253 3e-05 0.00414 0.01069 1 0.03927 1 0.01715 1 TSC2 9 (5%) 189 0.90664 1 0.04056 1 0.13905 1 0.35946 1 0.7675 1 0.56477 1 0.78792 1 0.10973 1 ARID1A 16 (8%) 182 0.83418 1 0.24035 1 0.01691 1 0.32181 1 0.10853 1 0.67224 1 0.01668 1 0.58552 1 IL6ST 7 (4%) 191 0.48888 1 0.26518 1 0.31311 1 0.03437 1 0.43877 1 0.10973 1 0.47738 1 1 1 ALB 18 (9%) 180 0.04092 1 0.01916 1 0.087969 1 0.2969 1 0.82191 1 0.84236 1 0.50364 1 0.25273 1 HNF1A 8 (4%) 190 0.16289 1 0.59767 1 0.1076 1 0.14228 1 0.094379 1 0.15275 1 0.01042 1 0.28365 1 APOB 24 (12%) 174 1 1 1 1 0.092219 1 0.01719 1 0.27824 1 0.071649 1 0.21991 1 0.01978 1 EEF1A1 5 (3%) 193 0.054969 1 0.86468 1 0.12999 1 0.073439 1 0.61163 1 0.26072 1 0.23944 1 0.61697 1 KIF19 10 (5%) 188 0.91761 1 0.13029 1 0.22815 1 0.45728 1 0.38294 1 0.81394 1 0.15534 1 0.10056 1 GNAS 7 (4%) 191 0.8907 1 0.15766 1 0.23662 1 0.75874 1 0.078059 1 0.45199 1 0.55611 1 0.72337 1 F5 4 (2%) 194 0.81885 1 0.20769 1 0.7004 1 1 1 0.098779 1 0.93712 1 NA NA NA NA PTEN 7 (4%) 191 0.48834 1 0.3261 1 0.86677 1 0.62476 1 0.85818 1 0.2779 1 0.78086 1 0.28517 1 HIST1H1C 5 (3%) 193 0.71976 1 0.86366 1 0.82232 1 0.28018 1 0.8017 1 0.25025 1 0.63884 1 0.02043 1 DLK2 4 (2%) 194 0.81801 1 0.6932 1 0.44202 1 1 1 0.33589 1 0.93611 1 0.18985 1 0.16167 1