This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 20 genes and 12 molecular subtypes across 172 patients, 7 significant findings detected with P value < 0.05 and Q value < 0.25.
-
TP53 mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
STK11 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
-
KEAP1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
TP53 | 86 (50%) | 86 |
0.00161 (0.327) |
0.0194 (1.00) |
4e-05 (0.00824) |
0.0329 (1.00) |
0.0565 (1.00) |
0.0201 (1.00) |
1e-05 (0.0021) |
3e-05 (0.00621) |
0.00266 (0.537) |
0.00743 (1.00) |
0.286 (1.00) |
0.368 (1.00) |
STK11 | 20 (12%) | 152 |
0.555 (1.00) |
0.424 (1.00) |
0.394 (1.00) |
0.638 (1.00) |
0.164 (1.00) |
0.121 (1.00) |
0.00024 (0.0492) |
1e-05 (0.0021) |
0.851 (1.00) |
0.0303 (1.00) |
1 (1.00) |
0.189 (1.00) |
KEAP1 | 31 (18%) | 141 |
0.556 (1.00) |
0.423 (1.00) |
0.123 (1.00) |
0.441 (1.00) |
0.00531 (1.00) |
0.00616 (1.00) |
0.00027 (0.0551) |
1e-05 (0.0021) |
1 (1.00) |
0.236 (1.00) |
0.36 (1.00) |
0.0194 (1.00) |
KRAS | 47 (27%) | 125 |
0.816 (1.00) |
1 (1.00) |
0.0745 (1.00) |
0.596 (1.00) |
0.0279 (1.00) |
0.597 (1.00) |
0.64 (1.00) |
0.00838 (1.00) |
0.00448 (0.896) |
0.452 (1.00) |
0.95 (1.00) |
0.502 (1.00) |
SMARCA4 | 15 (9%) | 157 |
0.12 (1.00) |
0.146 (1.00) |
0.132 (1.00) |
0.0093 (1.00) |
1 (1.00) |
0.419 (1.00) |
0.041 (1.00) |
0.00655 (1.00) |
0.14 (1.00) |
0.126 (1.00) |
0.19 (1.00) |
0.0602 (1.00) |
ARID1A | 11 (6%) | 161 |
0.0324 (1.00) |
0.472 (1.00) |
0.347 (1.00) |
0.96 (1.00) |
0.673 (1.00) |
0.847 (1.00) |
0.00326 (0.655) |
0.0514 (1.00) |
0.867 (1.00) |
0.224 (1.00) |
||
NF1 | 22 (13%) | 150 |
0.911 (1.00) |
0.826 (1.00) |
0.0203 (1.00) |
0.021 (1.00) |
0.92 (1.00) |
0.46 (1.00) |
0.3 (1.00) |
0.584 (1.00) |
0.136 (1.00) |
0.88 (1.00) |
0.148 (1.00) |
0.169 (1.00) |
U2AF1 | 6 (3%) | 166 |
1 (1.00) |
0.0607 (1.00) |
0.0824 (1.00) |
0.662 (1.00) |
0.536 (1.00) |
0.473 (1.00) |
0.06 (1.00) |
0.39 (1.00) |
0.708 (1.00) |
1 (1.00) |
||
EGFR | 23 (13%) | 149 |
0.279 (1.00) |
0.22 (1.00) |
0.15 (1.00) |
0.646 (1.00) |
0.325 (1.00) |
0.245 (1.00) |
0.017 (1.00) |
0.018 (1.00) |
0.766 (1.00) |
0.953 (1.00) |
0.273 (1.00) |
0.0603 (1.00) |
SETD2 | 15 (9%) | 157 |
0.502 (1.00) |
0.342 (1.00) |
0.766 (1.00) |
0.155 (1.00) |
0.654 (1.00) |
0.544 (1.00) |
0.232 (1.00) |
0.807 (1.00) |
0.272 (1.00) |
0.64 (1.00) |
||
CDKN2A | 8 (5%) | 164 |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.939 (1.00) |
0.476 (1.00) |
0.452 (1.00) |
1 (1.00) |
0.0645 (1.00) |
1 (1.00) |
0.0171 (1.00) |
||
MET | 11 (6%) | 161 |
0.137 (1.00) |
0.0229 (1.00) |
0.897 (1.00) |
0.451 (1.00) |
0.696 (1.00) |
0.0505 (1.00) |
0.726 (1.00) |
0.0721 (1.00) |
0.765 (1.00) |
0.444 (1.00) |
||
ERBB2 | 8 (5%) | 164 |
0.326 (1.00) |
0.868 (1.00) |
1 (1.00) |
0.741 (1.00) |
0.193 (1.00) |
0.432 (1.00) |
0.717 (1.00) |
0.0132 (1.00) |
0.771 (1.00) |
0.61 (1.00) |
||
CHRND | 9 (5%) | 163 |
0.454 (1.00) |
0.126 (1.00) |
0.503 (1.00) |
0.0979 (1.00) |
0.207 (1.00) |
0.17 (1.00) |
0.0295 (1.00) |
0.299 (1.00) |
0.519 (1.00) |
0.324 (1.00) |
||
BRAF | 16 (9%) | 156 |
0.249 (1.00) |
0.244 (1.00) |
1 (1.00) |
0.587 (1.00) |
0.658 (1.00) |
0.768 (1.00) |
0.803 (1.00) |
0.762 (1.00) |
0.191 (1.00) |
0.834 (1.00) |
0.718 (1.00) |
0.139 (1.00) |
GEN1 | 4 (2%) | 168 |
1 (1.00) |
0.433 (1.00) |
0.607 (1.00) |
0.0944 (1.00) |
1 (1.00) |
0.724 (1.00) |
0.709 (1.00) |
0.379 (1.00) |
||||
STX2 | 4 (2%) | 168 |
0.535 (1.00) |
0.619 (1.00) |
0.523 (1.00) |
0.305 (1.00) |
0.265 (1.00) |
0.883 (1.00) |
0.371 (1.00) |
0.38 (1.00) |
||||
MGA | 15 (9%) | 157 |
0.57 (1.00) |
0.108 (1.00) |
0.335 (1.00) |
0.33 (1.00) |
0.309 (1.00) |
0.594 (1.00) |
0.124 (1.00) |
0.367 (1.00) |
0.0155 (1.00) |
1 (1.00) |
||
GALC | 5 (3%) | 167 |
0.84 (1.00) |
0.612 (1.00) |
0.492 (1.00) |
0.839 (1.00) |
0.218 (1.00) |
0.274 (1.00) |
0.151 (1.00) |
0.782 (1.00) |
||||
CTNNB1 | 9 (5%) | 163 |
0.556 (1.00) |
0.359 (1.00) |
0.35 (1.00) |
0.0107 (1.00) |
0.216 (1.00) |
0.3 (1.00) |
0.906 (1.00) |
0.699 (1.00) |
0.45 (1.00) |
0.107 (1.00) |
P value = 0.00161 (Fisher's exact test), Q value = 0.33
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 5 | 9 | 12 | 6 |
TP53 MUTATED | 1 | 6 | 2 | 6 |
TP53 WILD-TYPE | 4 | 3 | 10 | 0 |
P value = 0.0194 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 11 | 7 |
TP53 MUTATED | 3 | 6 | 6 |
TP53 WILD-TYPE | 11 | 5 | 1 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
TP53 MUTATED | 47 | 20 | 19 |
TP53 WILD-TYPE | 21 | 48 | 17 |
P value = 0.0329 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
TP53 MUTATED | 8 | 11 | 17 | 22 |
TP53 WILD-TYPE | 18 | 13 | 11 | 11 |
P value = 0.0565 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 56 | 28 |
TP53 MUTATED | 3 | 27 | 16 |
TP53 WILD-TYPE | 12 | 29 | 12 |
P value = 0.0201 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 30 | 15 | 30 | 14 | 10 |
TP53 MUTATED | 11 | 5 | 21 | 7 | 2 |
TP53 WILD-TYPE | 19 | 10 | 9 | 7 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
TP53 MUTATED | 40 | 6 | 11 | 22 | 6 |
TP53 WILD-TYPE | 18 | 31 | 18 | 12 | 7 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
TP53 MUTATED | 10 | 4 | 22 | 21 | 3 | 7 | 8 | 1 | 9 |
TP53 WILD-TYPE | 16 | 16 | 6 | 6 | 11 | 8 | 12 | 3 | 8 |
P value = 0.00266 (Fisher's exact test), Q value = 0.54
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
TP53 MUTATED | 19 | 46 | 19 |
TP53 WILD-TYPE | 40 | 29 | 15 |
P value = 0.00743 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
TP53 MUTATED | 6 | 31 | 21 | 26 |
TP53 WILD-TYPE | 13 | 39 | 23 | 9 |
P value = 0.286 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
TP53 MUTATED | 32 | 5 | 18 |
TP53 WILD-TYPE | 29 | 9 | 11 |
P value = 0.368 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
TP53 MUTATED | 5 | 34 | 16 |
TP53 WILD-TYPE | 9 | 25 | 15 |
P value = 0.555 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 5 | 9 | 12 | 6 |
STK11 MUTATED | 0 | 0 | 2 | 1 |
STK11 WILD-TYPE | 5 | 9 | 10 | 5 |
P value = 0.424 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 11 | 7 |
STK11 MUTATED | 2 | 0 | 1 |
STK11 WILD-TYPE | 12 | 11 | 6 |
P value = 0.394 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
STK11 MUTATED | 6 | 11 | 3 |
STK11 WILD-TYPE | 62 | 57 | 33 |
P value = 0.638 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
STK11 MUTATED | 3 | 3 | 1 | 3 |
STK11 WILD-TYPE | 23 | 21 | 27 | 30 |
P value = 0.164 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 56 | 28 |
STK11 MUTATED | 3 | 4 | 5 |
STK11 WILD-TYPE | 12 | 52 | 23 |
P value = 0.121 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 30 | 15 | 30 | 14 | 10 |
STK11 MUTATED | 1 | 4 | 3 | 3 | 1 |
STK11 WILD-TYPE | 29 | 11 | 27 | 11 | 9 |
P value = 0.00024 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
STK11 MUTATED | 0 | 7 | 7 | 5 | 0 |
STK11 WILD-TYPE | 58 | 30 | 22 | 29 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
STK11 MUTATED | 1 | 0 | 0 | 0 | 8 | 2 | 8 | 0 | 0 |
STK11 WILD-TYPE | 25 | 20 | 28 | 27 | 6 | 13 | 12 | 4 | 17 |
P value = 0.851 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
STK11 MUTATED | 7 | 7 | 4 |
STK11 WILD-TYPE | 52 | 68 | 30 |
P value = 0.0303 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
STK11 MUTATED | 5 | 5 | 2 | 6 |
STK11 WILD-TYPE | 14 | 65 | 42 | 29 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
STK11 MUTATED | 6 | 1 | 3 |
STK11 WILD-TYPE | 55 | 13 | 26 |
P value = 0.189 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
STK11 MUTATED | 3 | 4 | 3 |
STK11 WILD-TYPE | 11 | 55 | 28 |
P value = 0.556 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 5 | 9 | 12 | 6 |
KEAP1 MUTATED | 0 | 0 | 2 | 1 |
KEAP1 WILD-TYPE | 5 | 9 | 10 | 5 |
P value = 0.423 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 11 | 7 |
KEAP1 MUTATED | 2 | 0 | 1 |
KEAP1 WILD-TYPE | 12 | 11 | 6 |
P value = 0.123 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
KEAP1 MUTATED | 8 | 13 | 10 |
KEAP1 WILD-TYPE | 60 | 55 | 26 |
P value = 0.441 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
KEAP1 MUTATED | 3 | 6 | 3 | 7 |
KEAP1 WILD-TYPE | 23 | 18 | 25 | 26 |
P value = 0.00531 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 56 | 28 |
KEAP1 MUTATED | 6 | 5 | 8 |
KEAP1 WILD-TYPE | 9 | 51 | 20 |
P value = 0.00616 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 30 | 15 | 30 | 14 | 10 |
KEAP1 MUTATED | 2 | 6 | 3 | 6 | 2 |
KEAP1 WILD-TYPE | 28 | 9 | 27 | 8 | 8 |
P value = 0.00027 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
KEAP1 MUTATED | 3 | 7 | 13 | 7 | 1 |
KEAP1 WILD-TYPE | 55 | 30 | 16 | 27 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
KEAP1 MUTATED | 1 | 0 | 2 | 6 | 7 | 2 | 12 | 0 | 1 |
KEAP1 WILD-TYPE | 25 | 20 | 26 | 21 | 7 | 13 | 8 | 4 | 16 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
KEAP1 MUTATED | 10 | 13 | 5 |
KEAP1 WILD-TYPE | 49 | 62 | 29 |
P value = 0.236 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
KEAP1 MUTATED | 5 | 11 | 4 | 8 |
KEAP1 WILD-TYPE | 14 | 59 | 40 | 27 |
P value = 0.36 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
KEAP1 MUTATED | 14 | 1 | 4 |
KEAP1 WILD-TYPE | 47 | 13 | 25 |
P value = 0.0194 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
KEAP1 MUTATED | 3 | 15 | 1 |
KEAP1 WILD-TYPE | 11 | 44 | 30 |
P value = 0.816 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 5 | 9 | 12 | 6 |
KRAS MUTATED | 2 | 3 | 3 | 1 |
KRAS WILD-TYPE | 3 | 6 | 9 | 5 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 11 | 7 |
KRAS MUTATED | 4 | 3 | 2 |
KRAS WILD-TYPE | 10 | 8 | 5 |
P value = 0.0745 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
KRAS MUTATED | 14 | 18 | 15 |
KRAS WILD-TYPE | 54 | 50 | 21 |
P value = 0.596 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
KRAS MUTATED | 6 | 7 | 9 | 6 |
KRAS WILD-TYPE | 20 | 17 | 19 | 27 |
P value = 0.0279 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 56 | 28 |
KRAS MUTATED | 8 | 11 | 5 |
KRAS WILD-TYPE | 7 | 45 | 23 |
P value = 0.597 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 30 | 15 | 30 | 14 | 10 |
KRAS MUTATED | 6 | 5 | 6 | 3 | 4 |
KRAS WILD-TYPE | 24 | 10 | 24 | 11 | 6 |
P value = 0.64 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
KRAS MUTATED | 14 | 12 | 10 | 8 | 2 |
KRAS WILD-TYPE | 44 | 25 | 19 | 26 | 11 |
P value = 0.00838 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
KRAS MUTATED | 9 | 4 | 5 | 2 | 7 | 7 | 6 | 3 | 3 |
KRAS WILD-TYPE | 17 | 16 | 23 | 25 | 7 | 8 | 14 | 1 | 14 |
P value = 0.00448 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
KRAS MUTATED | 25 | 13 | 7 |
KRAS WILD-TYPE | 34 | 62 | 27 |
P value = 0.452 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
KRAS MUTATED | 7 | 17 | 14 | 7 |
KRAS WILD-TYPE | 12 | 53 | 30 | 28 |
P value = 0.95 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
KRAS MUTATED | 15 | 4 | 7 |
KRAS WILD-TYPE | 46 | 10 | 22 |
P value = 0.502 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
KRAS MUTATED | 5 | 13 | 8 |
KRAS WILD-TYPE | 9 | 46 | 23 |
P value = 0.12 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 5 | 9 | 12 | 6 |
SMARCA4 MUTATED | 0 | 1 | 0 | 2 |
SMARCA4 WILD-TYPE | 5 | 8 | 12 | 4 |
P value = 0.146 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 11 | 7 |
SMARCA4 MUTATED | 1 | 0 | 2 |
SMARCA4 WILD-TYPE | 13 | 11 | 5 |
P value = 0.132 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
SMARCA4 MUTATED | 6 | 3 | 6 |
SMARCA4 WILD-TYPE | 62 | 65 | 30 |
P value = 0.0093 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
SMARCA4 MUTATED | 1 | 6 | 0 | 5 |
SMARCA4 WILD-TYPE | 25 | 18 | 28 | 28 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 56 | 28 |
SMARCA4 MUTATED | 1 | 6 | 3 |
SMARCA4 WILD-TYPE | 14 | 50 | 25 |
P value = 0.419 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 30 | 15 | 30 | 14 | 10 |
SMARCA4 MUTATED | 1 | 2 | 4 | 1 | 2 |
SMARCA4 WILD-TYPE | 29 | 13 | 26 | 13 | 8 |
P value = 0.041 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
SMARCA4 MUTATED | 3 | 1 | 6 | 5 | 0 |
SMARCA4 WILD-TYPE | 55 | 36 | 23 | 29 | 13 |
P value = 0.00655 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
SMARCA4 MUTATED | 2 | 0 | 1 | 4 | 0 | 1 | 7 | 0 | 0 |
SMARCA4 WILD-TYPE | 24 | 20 | 27 | 23 | 14 | 14 | 13 | 4 | 17 |
P value = 0.14 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
SMARCA4 MUTATED | 2 | 10 | 3 |
SMARCA4 WILD-TYPE | 57 | 65 | 31 |
P value = 0.126 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
SMARCA4 MUTATED | 1 | 7 | 1 | 6 |
SMARCA4 WILD-TYPE | 18 | 63 | 43 | 29 |
P value = 0.19 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
SMARCA4 MUTATED | 4 | 2 | 5 |
SMARCA4 WILD-TYPE | 57 | 12 | 24 |
P value = 0.0602 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
SMARCA4 MUTATED | 0 | 10 | 1 |
SMARCA4 WILD-TYPE | 14 | 49 | 30 |
P value = 0.0324 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
ARID1A MUTATED | 5 | 1 | 5 |
ARID1A WILD-TYPE | 63 | 67 | 31 |
P value = 0.472 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
ARID1A MUTATED | 1 | 3 | 3 | 1 |
ARID1A WILD-TYPE | 25 | 21 | 25 | 32 |
P value = 0.347 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 56 | 28 |
ARID1A MUTATED | 0 | 2 | 3 |
ARID1A WILD-TYPE | 15 | 54 | 25 |
P value = 0.96 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 30 | 15 | 30 | 14 | 10 |
ARID1A MUTATED | 1 | 1 | 2 | 1 | 0 |
ARID1A WILD-TYPE | 29 | 14 | 28 | 13 | 10 |
P value = 0.673 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
ARID1A MUTATED | 3 | 2 | 1 | 4 | 1 |
ARID1A WILD-TYPE | 55 | 35 | 28 | 30 | 12 |
P value = 0.847 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
ARID1A MUTATED | 1 | 2 | 1 | 3 | 0 | 2 | 1 | 0 | 1 |
ARID1A WILD-TYPE | 25 | 18 | 27 | 24 | 14 | 13 | 19 | 4 | 16 |
P value = 0.00326 (Fisher's exact test), Q value = 0.66
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
ARID1A MUTATED | 0 | 10 | 1 |
ARID1A WILD-TYPE | 59 | 65 | 33 |
P value = 0.0514 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
ARID1A MUTATED | 0 | 4 | 1 | 6 |
ARID1A WILD-TYPE | 19 | 66 | 43 | 29 |
P value = 0.867 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
ARID1A MUTATED | 4 | 1 | 3 |
ARID1A WILD-TYPE | 57 | 13 | 26 |
P value = 0.224 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
ARID1A MUTATED | 0 | 7 | 1 |
ARID1A WILD-TYPE | 14 | 52 | 30 |
P value = 0.911 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 5 | 9 | 12 | 6 |
NF1 MUTATED | 0 | 2 | 2 | 1 |
NF1 WILD-TYPE | 5 | 7 | 10 | 5 |
P value = 0.826 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 11 | 7 |
NF1 MUTATED | 3 | 1 | 1 |
NF1 WILD-TYPE | 11 | 10 | 6 |
P value = 0.0203 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
NF1 MUTATED | 15 | 5 | 2 |
NF1 WILD-TYPE | 53 | 63 | 34 |
P value = 0.021 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
NF1 MUTATED | 0 | 6 | 7 | 5 |
NF1 WILD-TYPE | 26 | 18 | 21 | 28 |
P value = 0.92 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 56 | 28 |
NF1 MUTATED | 2 | 8 | 3 |
NF1 WILD-TYPE | 13 | 48 | 25 |
P value = 0.46 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 30 | 15 | 30 | 14 | 10 |
NF1 MUTATED | 3 | 1 | 5 | 1 | 3 |
NF1 WILD-TYPE | 27 | 14 | 25 | 13 | 7 |
P value = 0.3 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
NF1 MUTATED | 11 | 2 | 2 | 4 | 2 |
NF1 WILD-TYPE | 47 | 35 | 27 | 30 | 11 |
P value = 0.584 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
NF1 MUTATED | 4 | 1 | 4 | 5 | 0 | 1 | 2 | 0 | 4 |
NF1 WILD-TYPE | 22 | 19 | 24 | 22 | 14 | 14 | 18 | 4 | 13 |
P value = 0.136 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
NF1 MUTATED | 4 | 11 | 7 |
NF1 WILD-TYPE | 55 | 64 | 27 |
P value = 0.88 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
NF1 MUTATED | 2 | 9 | 5 | 6 |
NF1 WILD-TYPE | 17 | 61 | 39 | 29 |
P value = 0.148 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
NF1 MUTATED | 6 | 3 | 7 |
NF1 WILD-TYPE | 55 | 11 | 22 |
P value = 0.169 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
NF1 MUTATED | 0 | 12 | 4 |
NF1 WILD-TYPE | 14 | 47 | 27 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
U2AF1 MUTATED | 2 | 3 | 1 |
U2AF1 WILD-TYPE | 66 | 65 | 35 |
P value = 0.0607 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
U2AF1 MUTATED | 0 | 0 | 0 | 3 |
U2AF1 WILD-TYPE | 26 | 24 | 28 | 30 |
P value = 0.0824 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 56 | 28 |
U2AF1 MUTATED | 2 | 2 | 0 |
U2AF1 WILD-TYPE | 13 | 54 | 28 |
P value = 0.662 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 30 | 15 | 30 | 14 | 10 |
U2AF1 MUTATED | 2 | 0 | 1 | 0 | 1 |
U2AF1 WILD-TYPE | 28 | 15 | 29 | 14 | 9 |
P value = 0.536 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
U2AF1 MUTATED | 3 | 1 | 1 | 0 | 1 |
U2AF1 WILD-TYPE | 55 | 36 | 28 | 34 | 12 |
P value = 0.473 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
U2AF1 MUTATED | 3 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
U2AF1 WILD-TYPE | 23 | 19 | 28 | 26 | 14 | 15 | 20 | 4 | 16 |
P value = 0.06 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
U2AF1 MUTATED | 5 | 1 | 0 |
U2AF1 WILD-TYPE | 54 | 74 | 34 |
P value = 0.39 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
U2AF1 MUTATED | 1 | 1 | 3 | 1 |
U2AF1 WILD-TYPE | 18 | 69 | 41 | 34 |
P value = 0.708 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
U2AF1 MUTATED | 3 | 0 | 0 |
U2AF1 WILD-TYPE | 58 | 14 | 29 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
U2AF1 MUTATED | 0 | 2 | 1 |
U2AF1 WILD-TYPE | 14 | 57 | 30 |
P value = 0.279 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 5 | 9 | 12 | 6 |
EGFR MUTATED | 0 | 0 | 3 | 0 |
EGFR WILD-TYPE | 5 | 9 | 9 | 6 |
P value = 0.22 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 11 | 7 |
EGFR MUTATED | 3 | 0 | 0 |
EGFR WILD-TYPE | 11 | 11 | 7 |
P value = 0.15 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
EGFR MUTATED | 13 | 8 | 2 |
EGFR WILD-TYPE | 55 | 60 | 34 |
P value = 0.646 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
EGFR MUTATED | 5 | 2 | 3 | 3 |
EGFR WILD-TYPE | 21 | 22 | 25 | 30 |
P value = 0.325 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 56 | 28 |
EGFR MUTATED | 1 | 12 | 3 |
EGFR WILD-TYPE | 14 | 44 | 25 |
P value = 0.245 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 30 | 15 | 30 | 14 | 10 |
EGFR MUTATED | 9 | 2 | 3 | 1 | 1 |
EGFR WILD-TYPE | 21 | 13 | 27 | 13 | 9 |
P value = 0.017 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
EGFR MUTATED | 10 | 8 | 0 | 2 | 3 |
EGFR WILD-TYPE | 48 | 29 | 29 | 32 | 10 |
P value = 0.018 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
EGFR MUTATED | 2 | 7 | 3 | 6 | 1 | 0 | 0 | 0 | 4 |
EGFR WILD-TYPE | 24 | 13 | 25 | 21 | 13 | 15 | 20 | 4 | 13 |
P value = 0.766 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
EGFR MUTATED | 7 | 10 | 6 |
EGFR WILD-TYPE | 52 | 65 | 28 |
P value = 0.953 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
EGFR MUTATED | 2 | 11 | 6 | 4 |
EGFR WILD-TYPE | 17 | 59 | 38 | 31 |
P value = 0.273 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
EGFR MUTATED | 10 | 0 | 3 |
EGFR WILD-TYPE | 51 | 14 | 26 |
P value = 0.0603 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
EGFR MUTATED | 2 | 4 | 7 |
EGFR WILD-TYPE | 12 | 55 | 24 |
P value = 0.502 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
SETD2 MUTATED | 4 | 8 | 3 |
SETD2 WILD-TYPE | 64 | 60 | 33 |
P value = 0.342 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
SETD2 MUTATED | 3 | 1 | 6 | 4 |
SETD2 WILD-TYPE | 23 | 23 | 22 | 29 |
P value = 0.766 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 56 | 28 |
SETD2 MUTATED | 2 | 4 | 2 |
SETD2 WILD-TYPE | 13 | 52 | 26 |
P value = 0.155 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 30 | 15 | 30 | 14 | 10 |
SETD2 MUTATED | 2 | 1 | 2 | 0 | 3 |
SETD2 WILD-TYPE | 28 | 14 | 28 | 14 | 7 |
P value = 0.654 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
SETD2 MUTATED | 6 | 5 | 1 | 2 | 1 |
SETD2 WILD-TYPE | 52 | 32 | 28 | 32 | 12 |
P value = 0.544 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
SETD2 MUTATED | 4 | 4 | 3 | 1 | 1 | 0 | 1 | 0 | 1 |
SETD2 WILD-TYPE | 22 | 16 | 25 | 26 | 13 | 15 | 19 | 4 | 16 |
P value = 0.232 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
SETD2 MUTATED | 8 | 4 | 2 |
SETD2 WILD-TYPE | 51 | 71 | 32 |
P value = 0.807 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
SETD2 MUTATED | 1 | 6 | 5 | 2 |
SETD2 WILD-TYPE | 18 | 64 | 39 | 33 |
P value = 0.272 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
SETD2 MUTATED | 10 | 0 | 3 |
SETD2 WILD-TYPE | 51 | 14 | 26 |
P value = 0.64 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
SETD2 MUTATED | 2 | 6 | 5 |
SETD2 WILD-TYPE | 12 | 53 | 26 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
CDKN2A MUTATED | 3 | 3 | 2 |
CDKN2A WILD-TYPE | 65 | 65 | 34 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
CDKN2A MUTATED | 1 | 0 | 1 | 1 |
CDKN2A WILD-TYPE | 25 | 24 | 27 | 32 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 56 | 28 |
CDKN2A MUTATED | 1 | 3 | 2 |
CDKN2A WILD-TYPE | 14 | 53 | 26 |
P value = 0.939 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 30 | 15 | 30 | 14 | 10 |
CDKN2A MUTATED | 2 | 1 | 1 | 1 | 1 |
CDKN2A WILD-TYPE | 28 | 14 | 29 | 13 | 9 |
P value = 0.476 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
CDKN2A MUTATED | 3 | 0 | 2 | 2 | 1 |
CDKN2A WILD-TYPE | 55 | 37 | 27 | 32 | 12 |
P value = 0.452 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
CDKN2A MUTATED | 2 | 0 | 2 | 1 | 0 | 1 | 0 | 1 | 1 |
CDKN2A WILD-TYPE | 24 | 20 | 26 | 26 | 14 | 14 | 20 | 3 | 16 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
CDKN2A MUTATED | 3 | 4 | 1 |
CDKN2A WILD-TYPE | 56 | 71 | 33 |
P value = 0.0645 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
CDKN2A MUTATED | 0 | 1 | 5 | 2 |
CDKN2A WILD-TYPE | 19 | 69 | 39 | 33 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
CDKN2A MUTATED | 2 | 0 | 1 |
CDKN2A WILD-TYPE | 59 | 14 | 28 |
P value = 0.0171 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
CDKN2A MUTATED | 2 | 0 | 1 |
CDKN2A WILD-TYPE | 12 | 59 | 30 |
P value = 0.137 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
MET MUTATED | 4 | 7 | 0 |
MET WILD-TYPE | 64 | 61 | 36 |
P value = 0.0229 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
MET MUTATED | 0 | 0 | 5 | 3 |
MET WILD-TYPE | 26 | 24 | 23 | 30 |
P value = 0.897 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 56 | 28 |
MET MUTATED | 1 | 7 | 2 |
MET WILD-TYPE | 14 | 49 | 26 |
P value = 0.451 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 30 | 15 | 30 | 14 | 10 |
MET MUTATED | 1 | 1 | 5 | 2 | 1 |
MET WILD-TYPE | 29 | 14 | 25 | 12 | 9 |
P value = 0.696 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
MET MUTATED | 5 | 2 | 3 | 1 | 0 |
MET WILD-TYPE | 53 | 35 | 26 | 33 | 13 |
P value = 0.0505 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
MET MUTATED | 0 | 1 | 5 | 0 | 1 | 0 | 2 | 1 | 1 |
MET WILD-TYPE | 26 | 19 | 23 | 27 | 13 | 15 | 18 | 3 | 16 |
P value = 0.726 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
MET MUTATED | 4 | 4 | 3 |
MET WILD-TYPE | 55 | 71 | 31 |
P value = 0.0721 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
MET MUTATED | 0 | 5 | 6 | 0 |
MET WILD-TYPE | 19 | 65 | 38 | 35 |
P value = 0.765 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
MET MUTATED | 6 | 0 | 2 |
MET WILD-TYPE | 55 | 14 | 27 |
P value = 0.444 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
MET MUTATED | 1 | 3 | 4 |
MET WILD-TYPE | 13 | 56 | 27 |
P value = 0.326 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
ERBB2 MUTATED | 5 | 3 | 0 |
ERBB2 WILD-TYPE | 63 | 65 | 36 |
P value = 0.868 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
ERBB2 MUTATED | 2 | 1 | 1 | 1 |
ERBB2 WILD-TYPE | 24 | 23 | 27 | 32 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 56 | 28 |
ERBB2 MUTATED | 1 | 3 | 1 |
ERBB2 WILD-TYPE | 14 | 53 | 27 |
P value = 0.741 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 30 | 15 | 30 | 14 | 10 |
ERBB2 MUTATED | 3 | 1 | 1 | 0 | 0 |
ERBB2 WILD-TYPE | 27 | 14 | 29 | 14 | 10 |
P value = 0.193 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
ERBB2 MUTATED | 5 | 2 | 0 | 0 | 1 |
ERBB2 WILD-TYPE | 53 | 35 | 29 | 34 | 12 |
P value = 0.432 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
ERBB2 MUTATED | 4 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
ERBB2 WILD-TYPE | 22 | 19 | 27 | 26 | 13 | 15 | 20 | 4 | 17 |
P value = 0.717 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
ERBB2 MUTATED | 4 | 3 | 1 |
ERBB2 WILD-TYPE | 55 | 72 | 33 |
P value = 0.0132 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
ERBB2 MUTATED | 4 | 3 | 1 | 0 |
ERBB2 WILD-TYPE | 15 | 67 | 43 | 35 |
P value = 0.771 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
ERBB2 MUTATED | 2 | 1 | 1 |
ERBB2 WILD-TYPE | 59 | 13 | 28 |
P value = 0.61 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
ERBB2 MUTATED | 1 | 2 | 1 |
ERBB2 WILD-TYPE | 13 | 57 | 30 |
P value = 0.454 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
CHRND MUTATED | 4 | 2 | 3 |
CHRND WILD-TYPE | 64 | 66 | 33 |
P value = 0.126 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
CHRND MUTATED | 1 | 0 | 4 | 1 |
CHRND WILD-TYPE | 25 | 24 | 24 | 32 |
P value = 0.503 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 56 | 28 |
CHRND MUTATED | 0 | 3 | 3 |
CHRND WILD-TYPE | 15 | 53 | 25 |
P value = 0.0979 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 30 | 15 | 30 | 14 | 10 |
CHRND MUTATED | 0 | 3 | 2 | 1 | 0 |
CHRND WILD-TYPE | 30 | 12 | 28 | 13 | 10 |
P value = 0.207 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
CHRND MUTATED | 4 | 0 | 1 | 4 | 0 |
CHRND WILD-TYPE | 54 | 37 | 28 | 30 | 13 |
P value = 0.17 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
CHRND MUTATED | 1 | 0 | 1 | 0 | 1 | 3 | 1 | 0 | 2 |
CHRND WILD-TYPE | 25 | 20 | 27 | 27 | 13 | 12 | 19 | 4 | 15 |
P value = 0.0295 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
CHRND MUTATED | 1 | 8 | 0 |
CHRND WILD-TYPE | 58 | 67 | 34 |
P value = 0.299 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
CHRND MUTATED | 0 | 4 | 1 | 4 |
CHRND WILD-TYPE | 19 | 66 | 43 | 31 |
P value = 0.519 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
CHRND MUTATED | 2 | 1 | 2 |
CHRND WILD-TYPE | 59 | 13 | 27 |
P value = 0.324 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
CHRND MUTATED | 1 | 4 | 0 |
CHRND WILD-TYPE | 13 | 55 | 31 |
P value = 0.249 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 5 | 9 | 12 | 6 |
BRAF MUTATED | 0 | 3 | 1 | 0 |
BRAF WILD-TYPE | 5 | 6 | 11 | 6 |
P value = 0.244 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 11 | 7 |
BRAF MUTATED | 1 | 3 | 0 |
BRAF WILD-TYPE | 13 | 8 | 7 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
BRAF MUTATED | 6 | 7 | 3 |
BRAF WILD-TYPE | 62 | 61 | 33 |
P value = 0.587 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
BRAF MUTATED | 4 | 1 | 4 | 3 |
BRAF WILD-TYPE | 22 | 23 | 24 | 30 |
P value = 0.658 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 56 | 28 |
BRAF MUTATED | 1 | 3 | 3 |
BRAF WILD-TYPE | 14 | 53 | 25 |
P value = 0.768 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 30 | 15 | 30 | 14 | 10 |
BRAF MUTATED | 3 | 0 | 3 | 1 | 0 |
BRAF WILD-TYPE | 27 | 15 | 27 | 13 | 10 |
P value = 0.803 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
BRAF MUTATED | 7 | 4 | 1 | 3 | 1 |
BRAF WILD-TYPE | 51 | 33 | 28 | 31 | 12 |
P value = 0.762 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
BRAF MUTATED | 2 | 2 | 5 | 3 | 1 | 1 | 0 | 0 | 2 |
BRAF WILD-TYPE | 24 | 18 | 23 | 24 | 13 | 14 | 20 | 4 | 15 |
P value = 0.191 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
BRAF MUTATED | 5 | 5 | 6 |
BRAF WILD-TYPE | 54 | 70 | 28 |
P value = 0.834 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
BRAF MUTATED | 2 | 8 | 4 | 2 |
BRAF WILD-TYPE | 17 | 62 | 40 | 33 |
P value = 0.718 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
BRAF MUTATED | 5 | 1 | 4 |
BRAF WILD-TYPE | 56 | 13 | 25 |
P value = 0.139 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
BRAF MUTATED | 2 | 3 | 5 |
BRAF WILD-TYPE | 12 | 56 | 26 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
GEN1 MUTATED | 2 | 1 | 1 |
GEN1 WILD-TYPE | 66 | 67 | 35 |
P value = 0.433 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
GEN1 MUTATED | 0 | 0 | 2 | 1 |
GEN1 WILD-TYPE | 26 | 24 | 26 | 32 |
P value = 0.607 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
GEN1 MUTATED | 3 | 0 | 0 | 1 | 0 |
GEN1 WILD-TYPE | 55 | 37 | 29 | 33 | 13 |
P value = 0.0944 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
GEN1 MUTATED | 3 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GEN1 WILD-TYPE | 23 | 20 | 28 | 27 | 13 | 15 | 20 | 4 | 17 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
GEN1 MUTATED | 1 | 2 | 0 |
GEN1 WILD-TYPE | 58 | 73 | 34 |
P value = 0.724 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
GEN1 MUTATED | 0 | 2 | 0 | 1 |
GEN1 WILD-TYPE | 19 | 68 | 44 | 34 |
P value = 0.709 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
GEN1 MUTATED | 3 | 0 | 0 |
GEN1 WILD-TYPE | 58 | 14 | 29 |
P value = 0.379 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
GEN1 MUTATED | 1 | 1 | 1 |
GEN1 WILD-TYPE | 13 | 58 | 30 |
P value = 0.535 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
STX2 MUTATED | 1 | 3 | 0 |
STX2 WILD-TYPE | 67 | 65 | 36 |
P value = 0.619 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
STX2 MUTATED | 0 | 0 | 1 | 2 |
STX2 WILD-TYPE | 26 | 24 | 27 | 31 |
P value = 0.523 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
STX2 MUTATED | 2 | 0 | 0 | 2 | 0 |
STX2 WILD-TYPE | 56 | 37 | 29 | 32 | 13 |
P value = 0.305 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
STX2 MUTATED | 0 | 0 | 2 | 0 | 1 | 1 | 0 | 0 | 0 |
STX2 WILD-TYPE | 26 | 20 | 26 | 27 | 13 | 14 | 20 | 4 | 17 |
P value = 0.265 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
STX2 MUTATED | 0 | 3 | 1 |
STX2 WILD-TYPE | 59 | 72 | 33 |
P value = 0.883 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
STX2 MUTATED | 0 | 3 | 1 | 0 |
STX2 WILD-TYPE | 19 | 67 | 43 | 35 |
P value = 0.371 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
STX2 MUTATED | 1 | 0 | 2 |
STX2 WILD-TYPE | 60 | 14 | 27 |
P value = 0.38 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
STX2 MUTATED | 1 | 1 | 1 |
STX2 WILD-TYPE | 13 | 58 | 30 |
P value = 0.57 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
MGA MUTATED | 7 | 4 | 4 |
MGA WILD-TYPE | 61 | 64 | 32 |
P value = 0.108 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
MGA MUTATED | 1 | 4 | 5 | 1 |
MGA WILD-TYPE | 25 | 20 | 23 | 32 |
P value = 0.335 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 56 | 28 |
MGA MUTATED | 0 | 5 | 4 |
MGA WILD-TYPE | 15 | 51 | 24 |
P value = 0.33 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 30 | 15 | 30 | 14 | 10 |
MGA MUTATED | 1 | 2 | 5 | 1 | 0 |
MGA WILD-TYPE | 29 | 13 | 25 | 13 | 10 |
P value = 0.309 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
MGA MUTATED | 8 | 1 | 2 | 4 | 0 |
MGA WILD-TYPE | 50 | 36 | 27 | 30 | 13 |
P value = 0.594 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
MGA MUTATED | 5 | 1 | 2 | 4 | 1 | 1 | 1 | 0 | 0 |
MGA WILD-TYPE | 21 | 19 | 26 | 23 | 13 | 14 | 19 | 4 | 17 |
P value = 0.124 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
MGA MUTATED | 2 | 10 | 2 |
MGA WILD-TYPE | 57 | 65 | 32 |
P value = 0.367 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
MGA MUTATED | 0 | 6 | 3 | 5 |
MGA WILD-TYPE | 19 | 64 | 41 | 30 |
P value = 0.0155 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
MGA MUTATED | 7 | 4 | 0 |
MGA WILD-TYPE | 54 | 10 | 29 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
MGA MUTATED | 1 | 7 | 3 |
MGA WILD-TYPE | 13 | 52 | 28 |
P value = 0.84 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
GALC MUTATED | 3 | 1 | 1 |
GALC WILD-TYPE | 65 | 67 | 35 |
P value = 0.612 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
GALC MUTATED | 0 | 2 | 1 | 2 |
GALC WILD-TYPE | 26 | 22 | 27 | 31 |
P value = 0.492 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
GALC MUTATED | 3 | 0 | 0 | 2 | 0 |
GALC WILD-TYPE | 55 | 37 | 29 | 32 | 13 |
P value = 0.839 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
GALC MUTATED | 2 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0 |
GALC WILD-TYPE | 24 | 20 | 27 | 26 | 14 | 14 | 20 | 4 | 17 |
P value = 0.218 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
GALC MUTATED | 0 | 4 | 1 |
GALC WILD-TYPE | 59 | 71 | 33 |
P value = 0.274 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
GALC MUTATED | 1 | 2 | 0 | 2 |
GALC WILD-TYPE | 18 | 68 | 44 | 33 |
P value = 0.151 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
GALC MUTATED | 1 | 0 | 3 |
GALC WILD-TYPE | 60 | 14 | 26 |
P value = 0.782 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
GALC MUTATED | 0 | 2 | 2 |
GALC WILD-TYPE | 14 | 57 | 29 |
P value = 0.556 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 68 | 36 |
CTNNB1 MUTATED | 2 | 5 | 2 |
CTNNB1 WILD-TYPE | 66 | 63 | 34 |
P value = 0.359 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 24 | 28 | 33 |
CTNNB1 MUTATED | 2 | 0 | 3 | 1 |
CTNNB1 WILD-TYPE | 24 | 24 | 25 | 32 |
P value = 0.35 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 56 | 28 |
CTNNB1 MUTATED | 1 | 2 | 3 |
CTNNB1 WILD-TYPE | 14 | 54 | 25 |
P value = 0.0107 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 30 | 15 | 30 | 14 | 10 |
CTNNB1 MUTATED | 0 | 4 | 1 | 1 | 0 |
CTNNB1 WILD-TYPE | 30 | 11 | 29 | 13 | 10 |
P value = 0.216 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
CTNNB1 MUTATED | 1 | 3 | 1 | 4 | 0 |
CTNNB1 WILD-TYPE | 57 | 34 | 28 | 30 | 13 |
P value = 0.3 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
CTNNB1 MUTATED | 1 | 1 | 0 | 2 | 3 | 0 | 1 | 0 | 1 |
CTNNB1 WILD-TYPE | 25 | 19 | 28 | 25 | 11 | 15 | 19 | 4 | 16 |
P value = 0.906 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 75 | 34 |
CTNNB1 MUTATED | 3 | 5 | 1 |
CTNNB1 WILD-TYPE | 56 | 70 | 33 |
P value = 0.699 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 70 | 44 | 35 |
CTNNB1 MUTATED | 2 | 3 | 2 | 2 |
CTNNB1 WILD-TYPE | 17 | 67 | 42 | 33 |
P value = 0.45 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 14 | 29 |
CTNNB1 MUTATED | 4 | 0 | 0 |
CTNNB1 WILD-TYPE | 57 | 14 | 29 |
P value = 0.107 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 59 | 31 |
CTNNB1 MUTATED | 2 | 1 | 1 |
CTNNB1 WILD-TYPE | 12 | 58 | 30 |
-
Mutation data file = transformed.cor.cli.txt
-
Molecular subtypes file = LUAD-TP.transferedmergedcluster.txt
-
Number of patients = 172
-
Number of significantly mutated genes = 20
-
Number of Molecular subtypes = 12
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.