This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 19 genes and 14 molecular subtypes across 316 patients, one significant finding detected with P value < 0.05 and Q value < 0.25.
-
C9ORF171 mutation correlated to 'MRNA_CNMF'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
MIR CNMF |
MIR CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
C9ORF171 | 5 (2%) | 311 |
0.00097 (0.205) |
0.00483 (1.00) |
0.395 (1.00) |
0.317 (1.00) |
1 (1.00) |
0.0128 (1.00) |
0.394 (1.00) |
0.691 (1.00) |
0.381 (1.00) |
0.498 (1.00) |
||||
TP53 | 273 (86%) | 43 |
0.956 (1.00) |
0.0874 (1.00) |
0.536 (1.00) |
0.919 (1.00) |
0.396 (1.00) |
0.936 (1.00) |
0.206 (1.00) |
0.226 (1.00) |
0.869 (1.00) |
0.413 (1.00) |
0.392 (1.00) |
0.578 (1.00) |
||
BRCA1 | 12 (4%) | 304 |
0.201 (1.00) |
0.424 (1.00) |
0.258 (1.00) |
0.385 (1.00) |
0.574 (1.00) |
0.296 (1.00) |
0.487 (1.00) |
0.193 (1.00) |
1 (1.00) |
0.882 (1.00) |
0.718 (1.00) |
0.263 (1.00) |
||
FAM86B2 | 6 (2%) | 310 |
0.452 (1.00) |
0.443 (1.00) |
0.221 (1.00) |
0.586 (1.00) |
0.876 (1.00) |
0.329 (1.00) |
1 (1.00) |
0.0681 (1.00) |
0.384 (1.00) |
0.704 (1.00) |
||||
TBP | 4 (1%) | 312 |
1 (1.00) |
1 (1.00) |
0.694 (1.00) |
0.0845 (1.00) |
0.0353 (1.00) |
0.0182 (1.00) |
0.131 (1.00) |
0.866 (1.00) |
1 (1.00) |
1 (1.00) |
0.69 (1.00) |
1 (1.00) |
||
NBPF10 | 4 (1%) | 312 |
0.838 (1.00) |
0.806 (1.00) |
0.235 (1.00) |
0.783 (1.00) |
0.844 (1.00) |
0.199 (1.00) |
0.527 (1.00) |
0.337 (1.00) |
0.102 (1.00) |
1 (1.00) |
0.82 (1.00) |
0.455 (1.00) |
||
NF1 | 14 (4%) | 302 |
0.373 (1.00) |
0.305 (1.00) |
0.838 (1.00) |
0.164 (1.00) |
0.485 (1.00) |
0.175 (1.00) |
0.112 (1.00) |
0.221 (1.00) |
0.435 (1.00) |
0.0316 (1.00) |
0.734 (1.00) |
0.531 (1.00) |
0.385 (1.00) |
|
C10ORF140 | 5 (2%) | 311 |
0.308 (1.00) |
0.0621 (1.00) |
0.867 (1.00) |
0.908 (1.00) |
0.375 (1.00) |
0.741 (1.00) |
0.591 (1.00) |
0.596 (1.00) |
0.134 (1.00) |
0.495 (1.00) |
||||
BRCA2 | 11 (3%) | 305 |
0.467 (1.00) |
0.918 (1.00) |
0.927 (1.00) |
0.628 (1.00) |
0.639 (1.00) |
0.431 (1.00) |
0.669 (1.00) |
0.521 (1.00) |
0.237 (1.00) |
0.486 (1.00) |
1 (1.00) |
0.634 (1.00) |
0.385 (1.00) |
|
CDK12 | 8 (3%) | 308 |
0.0624 (1.00) |
0.267 (1.00) |
0.309 (1.00) |
0.793 (1.00) |
0.823 (1.00) |
0.145 (1.00) |
0.598 (1.00) |
0.0412 (1.00) |
0.365 (1.00) |
1 (1.00) |
0.733 (1.00) |
0.508 (1.00) |
1 (1.00) |
|
OR4F21 | 3 (1%) | 313 |
0.632 (1.00) |
1 (1.00) |
0.634 (1.00) |
0.901 (1.00) |
0.213 (1.00) |
0.504 (1.00) |
1 (1.00) |
0.192 (1.00) |
0.785 (1.00) |
0.694 (1.00) |
||||
HYDIN | 11 (3%) | 305 |
0.583 (1.00) |
0.0363 (1.00) |
0.212 (1.00) |
0.429 (1.00) |
0.551 (1.00) |
0.289 (1.00) |
0.847 (1.00) |
0.281 (1.00) |
1 (1.00) |
1 (1.00) |
0.783 (1.00) |
0.69 (1.00) |
||
RB1 | 8 (3%) | 308 |
0.899 (1.00) |
0.231 (1.00) |
0.447 (1.00) |
0.439 (1.00) |
0.608 (1.00) |
0.224 (1.00) |
1 (1.00) |
0.906 (1.00) |
0.604 (1.00) |
0.695 (1.00) |
||||
GART | 3 (1%) | 313 |
1 (1.00) |
0.57 (1.00) |
0.633 (1.00) |
0.383 (1.00) |
0.0681 (1.00) |
0.0579 (1.00) |
||||||||
SRC | 4 (1%) | 312 |
0.837 (1.00) |
1 (1.00) |
0.562 (1.00) |
0.248 (1.00) |
0.126 (1.00) |
0.464 (1.00) |
0.485 (1.00) |
0.609 (1.00) |
1 (1.00) |
|||||
ZNF236 | 7 (2%) | 309 |
1 (1.00) |
1 (1.00) |
0.802 (1.00) |
0.311 (1.00) |
0.461 (1.00) |
0.269 (1.00) |
0.311 (1.00) |
0.752 (1.00) |
0.216 (1.00) |
0.0246 (1.00) |
||||
NBPF16 | 4 (1%) | 312 |
0.57 (1.00) |
1 (1.00) |
0.232 (1.00) |
0.0883 (1.00) |
0.276 (1.00) |
0.832 (1.00) |
0.411 (1.00) |
0.332 (1.00) |
0.178 (1.00) |
1 (1.00) |
0.227 (1.00) |
0.311 (1.00) |
1 (1.00) |
|
CYP11B1 | 7 (2%) | 309 |
0.0245 (1.00) |
0.361 (1.00) |
0.572 (1.00) |
0.319 (1.00) |
0.898 (1.00) |
0.209 (1.00) |
0.588 (1.00) |
0.151 (1.00) |
0.721 (1.00) |
1 (1.00) |
0.38 (1.00) |
0.868 (1.00) |
||
SON | 8 (3%) | 308 |
0.39 (1.00) |
0.432 (1.00) |
1 (1.00) |
0.645 (1.00) |
0.116 (1.00) |
0.0389 (1.00) |
0.137 (1.00) |
0.195 (1.00) |
0.468 (1.00) |
0.774 (1.00) |
0.772 (1.00) |
0.658 (1.00) |
P value = 0.956 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
TP53 MUTATED | 103 | 100 | 70 |
TP53 WILD-TYPE | 16 | 15 | 12 |
P value = 0.0874 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
TP53 MUTATED | 156 | 77 | 40 |
TP53 WILD-TYPE | 17 | 17 | 9 |
P value = 0.536 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
TP53 MUTATED | 82 | 80 | 111 |
TP53 WILD-TYPE | 10 | 16 | 17 |
P value = 0.919 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
TP53 MUTATED | 43 | 25 | 28 | 47 | 19 | 37 | 18 | 14 | 16 | 26 |
TP53 WILD-TYPE | 8 | 3 | 5 | 6 | 1 | 7 | 2 | 2 | 5 | 4 |
P value = 0.396 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
TP53 MUTATED | 92 | 92 | 85 |
TP53 WILD-TYPE | 16 | 10 | 16 |
P value = 0.936 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
TP53 MUTATED | 79 | 90 | 104 |
TP53 WILD-TYPE | 11 | 15 | 17 |
P value = 0.206 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 96 | 38 |
TP53 MUTATED | 63 | 88 | 33 |
TP53 WILD-TYPE | 13 | 8 | 5 |
P value = 0.226 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 48 | 64 | 31 |
TP53 MUTATED | 54 | 44 | 57 | 29 |
TP53 WILD-TYPE | 13 | 4 | 7 | 2 |
P value = 0.869 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 40 | 51 |
TP53 MUTATED | 60 | 36 | 45 |
TP53 WILD-TYPE | 10 | 4 | 6 |
P value = 0.413 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 76 | 19 |
TP53 MUTATED | 58 | 68 | 15 |
TP53 WILD-TYPE | 8 | 8 | 4 |
P value = 0.392 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
TP53 MUTATED | 65 | 106 | 78 |
TP53 WILD-TYPE | 14 | 13 | 11 |
P value = 0.578 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
TP53 MUTATED | 64 | 38 | 85 | 62 |
TP53 WILD-TYPE | 10 | 8 | 14 | 6 |
P value = 0.201 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
BRCA1 MUTATED | 4 | 7 | 1 |
BRCA1 WILD-TYPE | 115 | 108 | 81 |
P value = 0.424 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
BRCA1 MUTATED | 7 | 2 | 3 |
BRCA1 WILD-TYPE | 166 | 92 | 46 |
P value = 0.258 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
BRCA1 MUTATED | 1 | 4 | 7 |
BRCA1 WILD-TYPE | 91 | 92 | 121 |
P value = 0.385 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
BRCA1 MUTATED | 0 | 2 | 1 | 4 | 1 | 3 | 0 | 0 | 1 | 0 |
BRCA1 WILD-TYPE | 51 | 26 | 32 | 49 | 19 | 41 | 20 | 16 | 20 | 30 |
P value = 0.574 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
BRCA1 MUTATED | 5 | 5 | 2 |
BRCA1 WILD-TYPE | 103 | 97 | 99 |
P value = 0.296 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
BRCA1 MUTATED | 1 | 5 | 6 |
BRCA1 WILD-TYPE | 89 | 100 | 115 |
P value = 0.487 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 96 | 38 |
BRCA1 MUTATED | 3 | 3 | 3 |
BRCA1 WILD-TYPE | 73 | 93 | 35 |
P value = 0.193 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 48 | 64 | 31 |
BRCA1 MUTATED | 1 | 1 | 4 | 3 |
BRCA1 WILD-TYPE | 66 | 47 | 60 | 28 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 40 | 51 |
BRCA1 MUTATED | 4 | 2 | 2 |
BRCA1 WILD-TYPE | 66 | 38 | 49 |
P value = 0.882 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 76 | 19 |
BRCA1 MUTATED | 4 | 3 | 1 |
BRCA1 WILD-TYPE | 62 | 73 | 18 |
P value = 0.718 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
BRCA1 MUTATED | 3 | 3 | 4 |
BRCA1 WILD-TYPE | 76 | 116 | 85 |
P value = 0.263 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
BRCA1 MUTATED | 4 | 0 | 2 | 4 |
BRCA1 WILD-TYPE | 70 | 46 | 97 | 64 |
P value = 0.452 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
FAM86B2 MUTATED | 2 | 1 | 3 |
FAM86B2 WILD-TYPE | 117 | 114 | 79 |
P value = 0.443 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
FAM86B2 MUTATED | 2 | 3 | 1 |
FAM86B2 WILD-TYPE | 171 | 91 | 48 |
P value = 0.221 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
FAM86B2 MUTATED | 3 | 0 | 3 |
FAM86B2 WILD-TYPE | 89 | 96 | 125 |
P value = 0.586 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
FAM86B2 MUTATED | 2 | 0 | 0 | 2 | 1 | 0 | 1 | 0 | 0 | 0 |
FAM86B2 WILD-TYPE | 49 | 28 | 33 | 51 | 19 | 44 | 19 | 16 | 21 | 30 |
P value = 0.876 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
FAM86B2 MUTATED | 3 | 2 | 1 |
FAM86B2 WILD-TYPE | 105 | 100 | 100 |
P value = 0.329 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
FAM86B2 MUTATED | 0 | 3 | 3 |
FAM86B2 WILD-TYPE | 90 | 102 | 118 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 96 | 38 |
FAM86B2 MUTATED | 2 | 2 | 1 |
FAM86B2 WILD-TYPE | 74 | 94 | 37 |
P value = 0.0681 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 48 | 64 | 31 |
FAM86B2 MUTATED | 4 | 0 | 0 | 1 |
FAM86B2 WILD-TYPE | 63 | 48 | 64 | 30 |
P value = 0.384 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
FAM86B2 MUTATED | 1 | 3 | 0 |
FAM86B2 WILD-TYPE | 78 | 116 | 89 |
P value = 0.704 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
FAM86B2 MUTATED | 1 | 1 | 2 | 0 |
FAM86B2 WILD-TYPE | 73 | 45 | 97 | 68 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
TBP MUTATED | 2 | 1 | 1 |
TBP WILD-TYPE | 117 | 114 | 81 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
TBP MUTATED | 3 | 1 | 0 |
TBP WILD-TYPE | 170 | 93 | 49 |
P value = 0.694 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
TBP MUTATED | 2 | 1 | 1 |
TBP WILD-TYPE | 90 | 95 | 127 |
P value = 0.0845 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
TBP MUTATED | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 2 | 0 | 0 |
TBP WILD-TYPE | 50 | 28 | 33 | 53 | 20 | 43 | 20 | 14 | 21 | 30 |
P value = 0.0353 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
TBP MUTATED | 4 | 0 | 0 |
TBP WILD-TYPE | 104 | 102 | 101 |
P value = 0.0182 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
TBP MUTATED | 0 | 4 | 0 |
TBP WILD-TYPE | 90 | 101 | 121 |
P value = 0.131 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 96 | 38 |
TBP MUTATED | 3 | 0 | 0 |
TBP WILD-TYPE | 73 | 96 | 38 |
P value = 0.866 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 48 | 64 | 31 |
TBP MUTATED | 2 | 0 | 1 | 0 |
TBP WILD-TYPE | 65 | 48 | 63 | 31 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 40 | 51 |
TBP MUTATED | 1 | 1 | 1 |
TBP WILD-TYPE | 69 | 39 | 50 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 76 | 19 |
TBP MUTATED | 1 | 2 | 0 |
TBP WILD-TYPE | 65 | 74 | 19 |
P value = 0.69 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
TBP MUTATED | 2 | 1 | 1 |
TBP WILD-TYPE | 77 | 118 | 88 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
TBP MUTATED | 1 | 0 | 2 | 1 |
TBP WILD-TYPE | 73 | 46 | 97 | 67 |
P value = 0.838 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
NBPF10 MUTATED | 1 | 2 | 1 |
NBPF10 WILD-TYPE | 118 | 113 | 81 |
P value = 0.806 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
NBPF10 MUTATED | 2 | 1 | 1 |
NBPF10 WILD-TYPE | 171 | 93 | 48 |
P value = 0.235 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
NBPF10 MUTATED | 2 | 2 | 0 |
NBPF10 WILD-TYPE | 90 | 94 | 128 |
P value = 0.783 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
NBPF10 MUTATED | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
NBPF10 WILD-TYPE | 49 | 27 | 33 | 53 | 20 | 43 | 20 | 16 | 21 | 30 |
P value = 0.844 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
NBPF10 MUTATED | 1 | 2 | 1 |
NBPF10 WILD-TYPE | 107 | 100 | 100 |
P value = 0.199 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
NBPF10 MUTATED | 2 | 2 | 0 |
NBPF10 WILD-TYPE | 88 | 103 | 121 |
P value = 0.527 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 96 | 38 |
NBPF10 MUTATED | 2 | 1 | 1 |
NBPF10 WILD-TYPE | 74 | 95 | 37 |
P value = 0.337 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 48 | 64 | 31 |
NBPF10 MUTATED | 1 | 2 | 0 | 1 |
NBPF10 WILD-TYPE | 66 | 46 | 64 | 30 |
P value = 0.102 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 40 | 51 |
NBPF10 MUTATED | 0 | 2 | 1 |
NBPF10 WILD-TYPE | 70 | 38 | 50 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 76 | 19 |
NBPF10 MUTATED | 1 | 2 | 0 |
NBPF10 WILD-TYPE | 65 | 74 | 19 |
P value = 0.82 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
NBPF10 MUTATED | 1 | 1 | 2 |
NBPF10 WILD-TYPE | 78 | 118 | 87 |
P value = 0.455 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
NBPF10 MUTATED | 0 | 0 | 2 | 2 |
NBPF10 WILD-TYPE | 74 | 46 | 97 | 66 |
P value = 0.373 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
NF1 MUTATED | 4 | 4 | 6 |
NF1 WILD-TYPE | 115 | 111 | 76 |
P value = 0.305 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
NF1 MUTATED | 6 | 7 | 1 |
NF1 WILD-TYPE | 167 | 87 | 48 |
P value = 0.838 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
NF1 MUTATED | 3 | 5 | 6 |
NF1 WILD-TYPE | 89 | 91 | 122 |
P value = 0.164 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
NF1 MUTATED | 3 | 0 | 0 | 1 | 0 | 4 | 0 | 2 | 1 | 3 |
NF1 WILD-TYPE | 48 | 28 | 33 | 52 | 20 | 40 | 20 | 14 | 20 | 27 |
P value = 0.485 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
NF1 MUTATED | 7 | 4 | 3 |
NF1 WILD-TYPE | 101 | 98 | 98 |
P value = 0.175 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
NF1 MUTATED | 1 | 6 | 7 |
NF1 WILD-TYPE | 89 | 99 | 114 |
P value = 0.112 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 96 | 38 |
NF1 MUTATED | 4 | 1 | 3 |
NF1 WILD-TYPE | 72 | 95 | 35 |
P value = 0.221 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 48 | 64 | 31 |
NF1 MUTATED | 5 | 0 | 2 | 1 |
NF1 WILD-TYPE | 62 | 48 | 62 | 30 |
P value = 0.435 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 40 | 51 |
NF1 MUTATED | 4 | 0 | 2 |
NF1 WILD-TYPE | 66 | 40 | 49 |
P value = 0.0316 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 76 | 19 |
NF1 MUTATED | 5 | 0 | 1 |
NF1 WILD-TYPE | 61 | 76 | 18 |
P value = 0.734 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
NF1 MUTATED | 4 | 7 | 3 |
NF1 WILD-TYPE | 75 | 112 | 86 |
P value = 0.531 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
NF1 MUTATED | 6 | 1 | 4 | 3 |
NF1 WILD-TYPE | 68 | 45 | 95 | 65 |
P value = 0.385 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 8 | 5 |
NF1 MUTATED | 0 | 1 |
NF1 WILD-TYPE | 8 | 4 |
P value = 0.308 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
C10ORF140 MUTATED | 1 | 1 | 3 |
C10ORF140 WILD-TYPE | 118 | 114 | 79 |
P value = 0.0621 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
C10ORF140 MUTATED | 1 | 4 | 0 |
C10ORF140 WILD-TYPE | 172 | 90 | 49 |
P value = 0.867 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
C10ORF140 MUTATED | 2 | 1 | 2 |
C10ORF140 WILD-TYPE | 90 | 95 | 126 |
P value = 0.908 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
C10ORF140 MUTATED | 2 | 0 | 0 | 1 | 0 | 2 | 0 | 0 | 0 | 0 |
C10ORF140 WILD-TYPE | 49 | 28 | 33 | 52 | 20 | 42 | 20 | 16 | 21 | 30 |
P value = 0.375 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
C10ORF140 MUTATED | 3 | 2 | 0 |
C10ORF140 WILD-TYPE | 105 | 100 | 101 |
P value = 0.741 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
C10ORF140 MUTATED | 1 | 1 | 3 |
C10ORF140 WILD-TYPE | 89 | 104 | 118 |
P value = 0.591 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 96 | 38 |
C10ORF140 MUTATED | 2 | 1 | 0 |
C10ORF140 WILD-TYPE | 74 | 95 | 38 |
P value = 0.596 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 48 | 64 | 31 |
C10ORF140 MUTATED | 2 | 1 | 0 | 0 |
C10ORF140 WILD-TYPE | 65 | 47 | 64 | 31 |
P value = 0.134 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
C10ORF140 MUTATED | 3 | 1 | 0 |
C10ORF140 WILD-TYPE | 76 | 118 | 89 |
P value = 0.495 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
C10ORF140 MUTATED | 1 | 0 | 3 | 0 |
C10ORF140 WILD-TYPE | 73 | 46 | 96 | 68 |
P value = 0.467 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
BRCA2 MUTATED | 5 | 2 | 4 |
BRCA2 WILD-TYPE | 114 | 113 | 78 |
P value = 0.918 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
BRCA2 MUTATED | 7 | 3 | 1 |
BRCA2 WILD-TYPE | 166 | 91 | 48 |
P value = 0.927 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
BRCA2 MUTATED | 3 | 4 | 4 |
BRCA2 WILD-TYPE | 89 | 92 | 124 |
P value = 0.628 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
BRCA2 MUTATED | 3 | 1 | 0 | 1 | 0 | 2 | 2 | 1 | 0 | 1 |
BRCA2 WILD-TYPE | 48 | 27 | 33 | 52 | 20 | 42 | 18 | 15 | 21 | 29 |
P value = 0.639 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
BRCA2 MUTATED | 5 | 4 | 2 |
BRCA2 WILD-TYPE | 103 | 98 | 99 |
P value = 0.431 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
BRCA2 MUTATED | 5 | 2 | 4 |
BRCA2 WILD-TYPE | 85 | 103 | 117 |
P value = 0.669 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 96 | 38 |
BRCA2 MUTATED | 1 | 3 | 0 |
BRCA2 WILD-TYPE | 75 | 93 | 38 |
P value = 0.521 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 48 | 64 | 31 |
BRCA2 MUTATED | 2 | 1 | 0 | 1 |
BRCA2 WILD-TYPE | 65 | 47 | 64 | 30 |
P value = 0.237 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 40 | 51 |
BRCA2 MUTATED | 4 | 2 | 0 |
BRCA2 WILD-TYPE | 66 | 38 | 51 |
P value = 0.486 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 76 | 19 |
BRCA2 MUTATED | 4 | 2 | 0 |
BRCA2 WILD-TYPE | 62 | 74 | 19 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
BRCA2 MUTATED | 3 | 4 | 3 |
BRCA2 WILD-TYPE | 76 | 115 | 86 |
P value = 0.634 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
BRCA2 MUTATED | 4 | 2 | 3 | 1 |
BRCA2 WILD-TYPE | 70 | 44 | 96 | 67 |
P value = 0.385 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 8 | 5 |
BRCA2 MUTATED | 0 | 1 |
BRCA2 WILD-TYPE | 8 | 4 |
P value = 0.0624 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
CDK12 MUTATED | 2 | 6 | 0 |
CDK12 WILD-TYPE | 117 | 109 | 82 |
P value = 0.267 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
CDK12 MUTATED | 7 | 1 | 0 |
CDK12 WILD-TYPE | 166 | 93 | 49 |
P value = 0.309 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
CDK12 MUTATED | 4 | 1 | 3 |
CDK12 WILD-TYPE | 88 | 95 | 125 |
P value = 0.793 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
CDK12 MUTATED | 3 | 0 | 0 | 2 | 0 | 1 | 0 | 1 | 0 | 1 |
CDK12 WILD-TYPE | 48 | 28 | 33 | 51 | 20 | 43 | 20 | 15 | 21 | 29 |
P value = 0.823 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
CDK12 MUTATED | 2 | 3 | 3 |
CDK12 WILD-TYPE | 106 | 99 | 98 |
P value = 0.145 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
CDK12 MUTATED | 1 | 1 | 6 |
CDK12 WILD-TYPE | 89 | 104 | 115 |
P value = 0.598 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 96 | 38 |
CDK12 MUTATED | 3 | 2 | 0 |
CDK12 WILD-TYPE | 73 | 94 | 38 |
P value = 0.0412 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 48 | 64 | 31 |
CDK12 MUTATED | 1 | 0 | 1 | 3 |
CDK12 WILD-TYPE | 66 | 48 | 63 | 28 |
P value = 0.365 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 40 | 51 |
CDK12 MUTATED | 3 | 1 | 0 |
CDK12 WILD-TYPE | 67 | 39 | 51 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 76 | 19 |
CDK12 MUTATED | 2 | 2 | 0 |
CDK12 WILD-TYPE | 64 | 74 | 19 |
P value = 0.733 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
CDK12 MUTATED | 1 | 4 | 3 |
CDK12 WILD-TYPE | 78 | 115 | 86 |
P value = 0.508 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
CDK12 MUTATED | 3 | 2 | 1 | 2 |
CDK12 WILD-TYPE | 71 | 44 | 98 | 66 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 8 | 5 |
CDK12 MUTATED | 1 | 0 |
CDK12 WILD-TYPE | 7 | 5 |
P value = 0.632 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
OR4F21 MUTATED | 1 | 2 | 0 |
OR4F21 WILD-TYPE | 118 | 113 | 82 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
OR4F21 MUTATED | 2 | 1 | 0 |
OR4F21 WILD-TYPE | 171 | 93 | 49 |
P value = 0.634 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
OR4F21 MUTATED | 1 | 0 | 2 |
OR4F21 WILD-TYPE | 91 | 96 | 126 |
P value = 0.901 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
OR4F21 MUTATED | 1 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
OR4F21 WILD-TYPE | 50 | 28 | 33 | 51 | 20 | 44 | 20 | 16 | 21 | 30 |
P value = 0.213 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
OR4F21 MUTATED | 0 | 1 | 2 |
OR4F21 WILD-TYPE | 108 | 101 | 99 |
P value = 0.504 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
OR4F21 MUTATED | 1 | 0 | 2 |
OR4F21 WILD-TYPE | 89 | 105 | 119 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 96 | 38 |
OR4F21 MUTATED | 1 | 2 | 0 |
OR4F21 WILD-TYPE | 75 | 94 | 38 |
P value = 0.192 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 48 | 64 | 31 |
OR4F21 MUTATED | 0 | 0 | 2 | 1 |
OR4F21 WILD-TYPE | 67 | 48 | 62 | 30 |
P value = 0.785 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
OR4F21 MUTATED | 0 | 2 | 1 |
OR4F21 WILD-TYPE | 79 | 117 | 88 |
P value = 0.694 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
OR4F21 MUTATED | 0 | 0 | 2 | 1 |
OR4F21 WILD-TYPE | 74 | 46 | 97 | 67 |
P value = 0.00097 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
C9ORF171 MUTATED | 0 | 0 | 5 |
C9ORF171 WILD-TYPE | 119 | 115 | 77 |
P value = 0.00483 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
C9ORF171 MUTATED | 0 | 5 | 0 |
C9ORF171 WILD-TYPE | 173 | 89 | 49 |
P value = 0.395 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
C9ORF171 MUTATED | 3 | 1 | 1 |
C9ORF171 WILD-TYPE | 89 | 95 | 127 |
P value = 0.317 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
C9ORF171 MUTATED | 1 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 1 |
C9ORF171 WILD-TYPE | 50 | 28 | 33 | 52 | 18 | 44 | 20 | 16 | 21 | 29 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
C9ORF171 MUTATED | 2 | 2 | 1 |
C9ORF171 WILD-TYPE | 106 | 100 | 100 |
P value = 0.0128 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
C9ORF171 MUTATED | 0 | 0 | 5 |
C9ORF171 WILD-TYPE | 90 | 105 | 116 |
P value = 0.394 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 96 | 38 |
C9ORF171 MUTATED | 3 | 1 | 0 |
C9ORF171 WILD-TYPE | 73 | 95 | 38 |
P value = 0.691 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 48 | 64 | 31 |
C9ORF171 MUTATED | 2 | 0 | 2 | 0 |
C9ORF171 WILD-TYPE | 65 | 48 | 62 | 31 |
P value = 0.381 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
C9ORF171 MUTATED | 2 | 2 | 0 |
C9ORF171 WILD-TYPE | 77 | 117 | 89 |
P value = 0.498 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
C9ORF171 MUTATED | 1 | 0 | 3 | 0 |
C9ORF171 WILD-TYPE | 73 | 46 | 96 | 68 |
P value = 0.583 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
HYDIN MUTATED | 6 | 3 | 2 |
HYDIN WILD-TYPE | 113 | 112 | 80 |
P value = 0.0363 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
HYDIN MUTATED | 4 | 2 | 5 |
HYDIN WILD-TYPE | 169 | 92 | 44 |
P value = 0.212 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
HYDIN MUTATED | 1 | 3 | 7 |
HYDIN WILD-TYPE | 91 | 93 | 121 |
P value = 0.429 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
HYDIN MUTATED | 0 | 0 | 2 | 3 | 0 | 2 | 2 | 0 | 1 | 1 |
HYDIN WILD-TYPE | 51 | 28 | 31 | 50 | 20 | 42 | 18 | 16 | 20 | 29 |
P value = 0.551 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
HYDIN MUTATED | 4 | 5 | 2 |
HYDIN WILD-TYPE | 104 | 97 | 99 |
P value = 0.289 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
HYDIN MUTATED | 5 | 4 | 2 |
HYDIN WILD-TYPE | 85 | 101 | 119 |
P value = 0.847 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 96 | 38 |
HYDIN MUTATED | 1 | 3 | 1 |
HYDIN WILD-TYPE | 75 | 93 | 37 |
P value = 0.281 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 48 | 64 | 31 |
HYDIN MUTATED | 1 | 0 | 2 | 2 |
HYDIN WILD-TYPE | 66 | 48 | 62 | 29 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 40 | 51 |
HYDIN MUTATED | 1 | 1 | 1 |
HYDIN WILD-TYPE | 69 | 39 | 50 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 76 | 19 |
HYDIN MUTATED | 1 | 2 | 0 |
HYDIN WILD-TYPE | 65 | 74 | 19 |
P value = 0.783 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
HYDIN MUTATED | 3 | 5 | 2 |
HYDIN WILD-TYPE | 76 | 114 | 87 |
P value = 0.69 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
HYDIN MUTATED | 2 | 2 | 5 | 1 |
HYDIN WILD-TYPE | 72 | 44 | 94 | 67 |
P value = 0.899 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
RB1 MUTATED | 4 | 2 | 2 |
RB1 WILD-TYPE | 115 | 113 | 80 |
P value = 0.231 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
RB1 MUTATED | 3 | 2 | 3 |
RB1 WILD-TYPE | 170 | 92 | 46 |
P value = 0.447 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
RB1 MUTATED | 2 | 1 | 5 |
RB1 WILD-TYPE | 90 | 95 | 123 |
P value = 0.439 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
RB1 MUTATED | 0 | 1 | 0 | 2 | 1 | 1 | 1 | 1 | 1 | 0 |
RB1 WILD-TYPE | 51 | 27 | 33 | 51 | 19 | 43 | 19 | 15 | 20 | 30 |
P value = 0.608 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
RB1 MUTATED | 2 | 2 | 4 |
RB1 WILD-TYPE | 106 | 100 | 97 |
P value = 0.224 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
RB1 MUTATED | 4 | 3 | 1 |
RB1 WILD-TYPE | 86 | 102 | 120 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 96 | 38 |
RB1 MUTATED | 3 | 3 | 1 |
RB1 WILD-TYPE | 73 | 93 | 37 |
P value = 0.906 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 48 | 64 | 31 |
RB1 MUTATED | 2 | 1 | 3 | 1 |
RB1 WILD-TYPE | 65 | 47 | 61 | 30 |
P value = 0.604 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
RB1 MUTATED | 1 | 5 | 2 |
RB1 WILD-TYPE | 78 | 114 | 87 |
P value = 0.695 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
RB1 MUTATED | 3 | 0 | 3 | 2 |
RB1 WILD-TYPE | 71 | 46 | 96 | 66 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
GART MUTATED | 1 | 1 | 1 |
GART WILD-TYPE | 118 | 114 | 81 |
P value = 0.57 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
GART MUTATED | 1 | 1 | 1 |
GART WILD-TYPE | 172 | 93 | 48 |
P value = 0.633 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
GART MUTATED | 1 | 0 | 2 |
GART WILD-TYPE | 91 | 96 | 126 |
P value = 0.383 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
GART MUTATED | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 |
GART WILD-TYPE | 51 | 28 | 33 | 51 | 19 | 44 | 20 | 16 | 21 | 30 |
P value = 0.0681 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
GART MUTATED | 0 | 3 | 0 |
GART WILD-TYPE | 108 | 99 | 101 |
P value = 0.0579 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
GART MUTATED | 0 | 3 | 0 |
GART WILD-TYPE | 90 | 102 | 121 |
P value = 0.837 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
SRC MUTATED | 1 | 2 | 1 |
SRC WILD-TYPE | 118 | 113 | 81 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
SRC MUTATED | 3 | 1 | 0 |
SRC WILD-TYPE | 170 | 93 | 49 |
P value = 0.562 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
SRC MUTATED | 0 | 2 | 2 |
SRC WILD-TYPE | 92 | 94 | 126 |
P value = 0.248 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
SRC MUTATED | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 2 |
SRC WILD-TYPE | 51 | 27 | 33 | 53 | 20 | 43 | 20 | 16 | 21 | 28 |
P value = 0.126 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
SRC MUTATED | 0 | 3 | 1 |
SRC WILD-TYPE | 108 | 99 | 100 |
P value = 0.464 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
SRC MUTATED | 0 | 1 | 3 |
SRC WILD-TYPE | 90 | 104 | 118 |
P value = 0.485 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
SRC MUTATED | 0 | 1 | 2 |
SRC WILD-TYPE | 79 | 118 | 87 |
P value = 0.609 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
SRC MUTATED | 0 | 1 | 1 | 1 |
SRC WILD-TYPE | 74 | 45 | 98 | 67 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 8 | 5 |
SRC MUTATED | 1 | 0 |
SRC WILD-TYPE | 7 | 5 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
ZNF236 MUTATED | 3 | 2 | 2 |
ZNF236 WILD-TYPE | 116 | 113 | 80 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
ZNF236 MUTATED | 4 | 2 | 1 |
ZNF236 WILD-TYPE | 169 | 92 | 48 |
P value = 0.802 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
ZNF236 MUTATED | 3 | 2 | 2 |
ZNF236 WILD-TYPE | 89 | 94 | 126 |
P value = 0.311 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
ZNF236 MUTATED | 0 | 2 | 0 | 1 | 1 | 2 | 1 | 0 | 0 | 0 |
ZNF236 WILD-TYPE | 51 | 26 | 33 | 52 | 19 | 42 | 19 | 16 | 21 | 30 |
P value = 0.461 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
ZNF236 MUTATED | 4 | 1 | 2 |
ZNF236 WILD-TYPE | 104 | 101 | 99 |
P value = 0.269 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
ZNF236 MUTATED | 1 | 1 | 5 |
ZNF236 WILD-TYPE | 89 | 104 | 116 |
P value = 0.311 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 96 | 38 |
ZNF236 MUTATED | 0 | 3 | 1 |
ZNF236 WILD-TYPE | 76 | 93 | 37 |
P value = 0.752 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 48 | 64 | 31 |
ZNF236 MUTATED | 1 | 2 | 1 | 0 |
ZNF236 WILD-TYPE | 66 | 46 | 63 | 31 |
P value = 0.216 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
ZNF236 MUTATED | 1 | 1 | 4 |
ZNF236 WILD-TYPE | 78 | 118 | 85 |
P value = 0.0246 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
ZNF236 MUTATED | 2 | 0 | 0 | 4 |
ZNF236 WILD-TYPE | 72 | 46 | 99 | 64 |
P value = 0.57 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
NBPF16 MUTATED | 1 | 1 | 2 |
NBPF16 WILD-TYPE | 118 | 114 | 80 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
NBPF16 MUTATED | 3 | 1 | 0 |
NBPF16 WILD-TYPE | 170 | 93 | 49 |
P value = 0.232 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
NBPF16 MUTATED | 2 | 2 | 0 |
NBPF16 WILD-TYPE | 90 | 94 | 128 |
P value = 0.0883 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
NBPF16 MUTATED | 0 | 0 | 1 | 0 | 2 | 1 | 0 | 0 | 0 | 0 |
NBPF16 WILD-TYPE | 51 | 28 | 32 | 53 | 18 | 43 | 20 | 16 | 21 | 30 |
P value = 0.276 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
NBPF16 MUTATED | 3 | 0 | 1 |
NBPF16 WILD-TYPE | 105 | 102 | 100 |
P value = 0.832 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
NBPF16 MUTATED | 1 | 2 | 1 |
NBPF16 WILD-TYPE | 89 | 103 | 120 |
P value = 0.411 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 96 | 38 |
NBPF16 MUTATED | 0 | 2 | 1 |
NBPF16 WILD-TYPE | 76 | 94 | 37 |
P value = 0.332 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 48 | 64 | 31 |
NBPF16 MUTATED | 1 | 2 | 0 | 0 |
NBPF16 WILD-TYPE | 66 | 46 | 64 | 31 |
P value = 0.178 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 40 | 51 |
NBPF16 MUTATED | 0 | 1 | 2 |
NBPF16 WILD-TYPE | 70 | 39 | 49 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 76 | 19 |
NBPF16 MUTATED | 1 | 2 | 0 |
NBPF16 WILD-TYPE | 65 | 74 | 19 |
P value = 0.227 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
NBPF16 MUTATED | 0 | 1 | 3 |
NBPF16 WILD-TYPE | 79 | 118 | 86 |
P value = 0.311 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
NBPF16 MUTATED | 1 | 1 | 0 | 2 |
NBPF16 WILD-TYPE | 73 | 45 | 99 | 66 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 8 | 5 |
NBPF16 MUTATED | 1 | 0 |
NBPF16 WILD-TYPE | 7 | 5 |
P value = 0.0245 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
CYP11B1 MUTATED | 1 | 6 | 0 |
CYP11B1 WILD-TYPE | 118 | 109 | 82 |
P value = 0.361 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
CYP11B1 MUTATED | 6 | 1 | 0 |
CYP11B1 WILD-TYPE | 167 | 93 | 49 |
P value = 0.572 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
CYP11B1 MUTATED | 2 | 1 | 4 |
CYP11B1 WILD-TYPE | 90 | 95 | 124 |
P value = 0.319 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
CYP11B1 MUTATED | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 3 |
CYP11B1 WILD-TYPE | 50 | 28 | 33 | 52 | 20 | 43 | 20 | 15 | 21 | 27 |
P value = 0.898 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
CYP11B1 MUTATED | 2 | 3 | 2 |
CYP11B1 WILD-TYPE | 106 | 99 | 99 |
P value = 0.209 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
CYP11B1 MUTATED | 0 | 3 | 4 |
CYP11B1 WILD-TYPE | 90 | 102 | 117 |
P value = 0.588 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 96 | 38 |
CYP11B1 MUTATED | 2 | 1 | 0 |
CYP11B1 WILD-TYPE | 74 | 95 | 38 |
P value = 0.151 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 48 | 64 | 31 |
CYP11B1 MUTATED | 3 | 0 | 0 | 0 |
CYP11B1 WILD-TYPE | 64 | 48 | 64 | 31 |
P value = 0.721 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 40 | 51 |
CYP11B1 MUTATED | 2 | 2 | 1 |
CYP11B1 WILD-TYPE | 68 | 38 | 50 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 76 | 19 |
CYP11B1 MUTATED | 2 | 3 | 0 |
CYP11B1 WILD-TYPE | 64 | 73 | 19 |
P value = 0.38 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
CYP11B1 MUTATED | 1 | 5 | 1 |
CYP11B1 WILD-TYPE | 78 | 114 | 88 |
P value = 0.868 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
CYP11B1 MUTATED | 3 | 1 | 2 | 1 |
CYP11B1 WILD-TYPE | 71 | 45 | 97 | 67 |
P value = 0.39 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 115 | 82 |
SON MUTATED | 4 | 1 | 3 |
SON WILD-TYPE | 115 | 114 | 79 |
P value = 0.432 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 94 | 49 |
SON MUTATED | 3 | 3 | 2 |
SON WILD-TYPE | 170 | 91 | 47 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 96 | 128 |
SON MUTATED | 2 | 3 | 3 |
SON WILD-TYPE | 90 | 93 | 125 |
P value = 0.645 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 51 | 28 | 33 | 53 | 20 | 44 | 20 | 16 | 21 | 30 |
SON MUTATED | 2 | 0 | 1 | 1 | 0 | 2 | 2 | 0 | 0 | 0 |
SON WILD-TYPE | 49 | 28 | 32 | 52 | 20 | 42 | 18 | 16 | 21 | 30 |
P value = 0.116 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 108 | 102 | 101 |
SON MUTATED | 6 | 1 | 1 |
SON WILD-TYPE | 102 | 101 | 100 |
P value = 0.0389 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 105 | 121 |
SON MUTATED | 4 | 4 | 0 |
SON WILD-TYPE | 86 | 101 | 121 |
P value = 0.137 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 96 | 38 |
SON MUTATED | 0 | 2 | 2 |
SON WILD-TYPE | 76 | 94 | 36 |
P value = 0.195 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 48 | 64 | 31 |
SON MUTATED | 1 | 0 | 1 | 2 |
SON WILD-TYPE | 66 | 48 | 63 | 29 |
P value = 0.468 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 40 | 51 |
SON MUTATED | 1 | 2 | 1 |
SON WILD-TYPE | 69 | 38 | 50 |
P value = 0.774 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 76 | 19 |
SON MUTATED | 1 | 3 | 0 |
SON WILD-TYPE | 65 | 73 | 19 |
P value = 0.772 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 119 | 89 |
SON MUTATED | 2 | 3 | 1 |
SON WILD-TYPE | 77 | 116 | 88 |
P value = 0.658 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 46 | 99 | 68 |
SON MUTATED | 3 | 0 | 2 | 1 |
SON WILD-TYPE | 71 | 46 | 97 | 67 |
-
Mutation data file = transformed.cor.cli.txt
-
Molecular subtypes file = OV-TP.transferedmergedcluster.txt
-
Number of patients = 316
-
Number of significantly mutated genes = 19
-
Number of Molecular subtypes = 14
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.