This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 63 focal events and 10 molecular subtypes across 184 patients, 91 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1q21.3 cnv correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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amp_2q36.2 cnv correlated to 'CN_CNMF'.
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amp_3q26.2 cnv correlated to 'CN_CNMF'.
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amp_7q22.1 cnv correlated to 'CN_CNMF'.
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amp_8q24.21 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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amp_12p13.33 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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amp_12p11.21 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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amp_12q15 cnv correlated to 'CN_CNMF'.
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amp_17q12 cnv correlated to 'CN_CNMF'.
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amp_18q11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_19q13.2 cnv correlated to 'CN_CNMF'.
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amp_20p11.23 cnv correlated to 'CN_CNMF'.
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amp_xq27.1 cnv correlated to 'CN_CNMF'.
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del_1p36.32 cnv correlated to 'CN_CNMF'.
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del_1p36.11 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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del_2q14.3 cnv correlated to 'CN_CNMF'.
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del_3p21.31 cnv correlated to 'CN_CNMF'.
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del_5q14.2 cnv correlated to 'CN_CNMF'.
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del_6p25.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6p22.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6q25.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_8p23.2 cnv correlated to 'CN_CNMF'.
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del_9p21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10q23.33 cnv correlated to 'CN_CNMF'.
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del_12p13.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_12q12 cnv correlated to 'CN_CNMF'.
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del_12q21.33 cnv correlated to 'CN_CNMF'.
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del_12q24.33 cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_15q15.1 cnv correlated to 'CN_CNMF'.
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del_17p12 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_17q22 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_18q21.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_19p13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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del_19p13.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_21q11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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del_22q13.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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del_22q13.32 cnv correlated to 'CN_CNMF'.
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del_xp21.1 cnv correlated to 'CN_CNMF'.
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del_xq11.2 cnv correlated to 'CN_CNMF'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
del 9p21 3 | 116 (63%) | 68 |
1e-05 (0.00628) |
1e-05 (0.00628) |
0.0156 (1.00) |
0.0678 (1.00) |
1e-05 (0.00628) |
5e-05 (0.0284) |
1e-05 (0.00628) |
1e-05 (0.00628) |
1e-05 (0.00628) |
1e-05 (0.00628) |
del 17p12 | 89 (48%) | 95 |
1e-05 (0.00628) |
1e-05 (0.00628) |
0.0104 (1.00) |
0.0108 (1.00) |
1e-05 (0.00628) |
4e-05 (0.0229) |
1e-05 (0.00628) |
5e-05 (0.0284) |
2e-05 (0.0116) |
2e-05 (0.0116) |
del 18q21 2 | 126 (68%) | 58 |
1e-05 (0.00628) |
1e-05 (0.00628) |
0.00329 (1.00) |
0.0214 (1.00) |
6e-05 (0.0338) |
4e-05 (0.0229) |
0.00017 (0.0942) |
0.0001 (0.0557) |
0.0103 (1.00) |
1e-05 (0.00628) |
del 6q25 3 | 91 (49%) | 93 |
1e-05 (0.00628) |
1e-05 (0.00628) |
0.00954 (1.00) |
0.0356 (1.00) |
0.00061 (0.325) |
0.00486 (1.00) |
0.00463 (1.00) |
0.00028 (0.154) |
2e-05 (0.0116) |
8e-05 (0.0448) |
del 17q22 | 49 (27%) | 135 |
1e-05 (0.00628) |
1e-05 (0.00628) |
0.00046 (0.247) |
0.00044 (0.237) |
0.00922 (1.00) |
0.0141 (1.00) |
0.00878 (1.00) |
0.0265 (1.00) |
1e-05 (0.00628) |
0.0537 (1.00) |
del 6p25 2 | 74 (40%) | 110 |
1e-05 (0.00628) |
1e-05 (0.00628) |
0.00229 (1.00) |
0.122 (1.00) |
0.0311 (1.00) |
0.0123 (1.00) |
0.0879 (1.00) |
0.00036 (0.197) |
0.00133 (0.685) |
0.00015 (0.0832) |
del 19p13 2 | 28 (15%) | 156 |
2e-05 (0.0116) |
1e-05 (0.00628) |
0.125 (1.00) |
0.524 (1.00) |
0.0066 (1.00) |
0.00347 (1.00) |
0.0526 (1.00) |
0.00031 (0.17) |
1e-05 (0.00628) |
0.00056 (0.3) |
amp 18q11 2 | 56 (30%) | 128 |
1e-05 (0.00628) |
6e-05 (0.0338) |
0.0115 (1.00) |
0.00248 (1.00) |
0.0245 (1.00) |
0.0761 (1.00) |
0.00265 (1.00) |
0.00061 (0.325) |
0.00362 (1.00) |
0.00026 (0.143) |
del 6p22 2 | 70 (38%) | 114 |
1e-05 (0.00628) |
1e-05 (0.00628) |
0.0174 (1.00) |
0.31 (1.00) |
0.0791 (1.00) |
0.0225 (1.00) |
0.229 (1.00) |
0.00077 (0.405) |
0.00261 (1.00) |
0.00023 (0.127) |
del 12p13 1 | 29 (16%) | 155 |
3e-05 (0.0172) |
2e-05 (0.0116) |
0.0174 (1.00) |
0.271 (1.00) |
0.0103 (1.00) |
0.0012 (0.623) |
0.00465 (1.00) |
6e-05 (0.0338) |
0.021 (1.00) |
0.00059 (0.314) |
del 19p13 3 | 36 (20%) | 148 |
1e-05 (0.00628) |
1e-05 (0.00628) |
0.391 (1.00) |
0.44 (1.00) |
0.0837 (1.00) |
0.00166 (0.848) |
0.167 (1.00) |
0.0084 (1.00) |
5e-05 (0.0284) |
0.00416 (1.00) |
del 21q11 2 | 62 (34%) | 122 |
1e-05 (0.00628) |
0.00042 (0.228) |
0.073 (1.00) |
0.251 (1.00) |
0.00911 (1.00) |
0.0587 (1.00) |
0.374 (1.00) |
0.0213 (1.00) |
0.00037 (0.201) |
0.0191 (1.00) |
del 22q13 31 | 60 (33%) | 124 |
1e-05 (0.00628) |
0.00036 (0.197) |
0.394 (1.00) |
0.866 (1.00) |
0.0131 (1.00) |
0.0799 (1.00) |
0.0413 (1.00) |
0.0169 (1.00) |
9e-05 (0.0503) |
0.0011 (0.574) |
amp 1q21 3 | 62 (34%) | 122 |
0.00254 (1.00) |
0.00042 (0.228) |
0.133 (1.00) |
0.205 (1.00) |
0.0012 (0.623) |
0.011 (1.00) |
0.00147 (0.753) |
0.0161 (1.00) |
0.00036 (0.197) |
0.0027 (1.00) |
amp 8q24 21 | 74 (40%) | 110 |
1e-05 (0.00628) |
2e-05 (0.0116) |
0.0689 (1.00) |
0.0417 (1.00) |
0.129 (1.00) |
0.0611 (1.00) |
0.113 (1.00) |
0.0582 (1.00) |
0.00297 (1.00) |
0.00698 (1.00) |
amp 12p13 33 | 39 (21%) | 145 |
1e-05 (0.00628) |
0.00032 (0.175) |
0.605 (1.00) |
0.434 (1.00) |
0.773 (1.00) |
0.553 (1.00) |
0.122 (1.00) |
0.197 (1.00) |
0.00069 (0.365) |
0.885 (1.00) |
amp 12p11 21 | 43 (23%) | 141 |
1e-05 (0.00628) |
0.00043 (0.232) |
0.364 (1.00) |
0.891 (1.00) |
0.244 (1.00) |
0.311 (1.00) |
0.0187 (1.00) |
0.00748 (1.00) |
0.00362 (1.00) |
0.514 (1.00) |
del 1p36 11 | 68 (37%) | 116 |
1e-05 (0.00628) |
1e-05 (0.00628) |
0.081 (1.00) |
0.231 (1.00) |
0.00171 (0.872) |
0.0179 (1.00) |
0.107 (1.00) |
0.0852 (1.00) |
0.00815 (1.00) |
0.00547 (1.00) |
del 12q24 33 | 43 (23%) | 141 |
2e-05 (0.0116) |
0.00124 (0.641) |
0.00613 (1.00) |
0.00821 (1.00) |
0.00116 (0.603) |
0.00322 (1.00) |
0.00362 (1.00) |
0.00049 (0.263) |
0.006 (1.00) |
9e-05 (0.0503) |
amp 2q36 2 | 26 (14%) | 158 |
0.0001 (0.0557) |
0.00378 (1.00) |
0.106 (1.00) |
0.394 (1.00) |
0.0581 (1.00) |
0.0206 (1.00) |
0.606 (1.00) |
0.00402 (1.00) |
0.165 (1.00) |
0.00321 (1.00) |
amp 3q26 2 | 32 (17%) | 152 |
4e-05 (0.0229) |
0.0007 (0.37) |
0.113 (1.00) |
0.156 (1.00) |
0.0404 (1.00) |
0.0527 (1.00) |
0.218 (1.00) |
0.0164 (1.00) |
0.00724 (1.00) |
0.0864 (1.00) |
amp 7q22 1 | 56 (30%) | 128 |
1e-05 (0.00628) |
0.199 (1.00) |
0.251 (1.00) |
0.73 (1.00) |
0.144 (1.00) |
0.312 (1.00) |
0.0444 (1.00) |
0.0369 (1.00) |
0.00578 (1.00) |
0.066 (1.00) |
amp 12q15 | 29 (16%) | 155 |
1e-05 (0.00628) |
0.0023 (1.00) |
0.338 (1.00) |
0.286 (1.00) |
0.804 (1.00) |
0.327 (1.00) |
0.0959 (1.00) |
0.0769 (1.00) |
0.0136 (1.00) |
0.406 (1.00) |
amp 17q12 | 31 (17%) | 153 |
5e-05 (0.0284) |
0.212 (1.00) |
0.507 (1.00) |
0.443 (1.00) |
0.13 (1.00) |
0.212 (1.00) |
0.0799 (1.00) |
0.0605 (1.00) |
0.257 (1.00) |
0.126 (1.00) |
amp 19q13 2 | 47 (26%) | 137 |
1e-05 (0.00628) |
0.00765 (1.00) |
0.566 (1.00) |
0.647 (1.00) |
0.951 (1.00) |
0.874 (1.00) |
0.573 (1.00) |
0.228 (1.00) |
0.388 (1.00) |
0.576 (1.00) |
amp 20p11 23 | 38 (21%) | 146 |
1e-05 (0.00628) |
0.0486 (1.00) |
0.123 (1.00) |
0.442 (1.00) |
0.723 (1.00) |
0.396 (1.00) |
0.389 (1.00) |
0.0248 (1.00) |
0.00094 (0.493) |
0.16 (1.00) |
amp xq27 1 | 21 (11%) | 163 |
2e-05 (0.0116) |
0.664 (1.00) |
0.879 (1.00) |
0.309 (1.00) |
0.759 (1.00) |
0.194 (1.00) |
0.211 (1.00) |
0.454 (1.00) |
0.871 (1.00) |
0.651 (1.00) |
del 1p36 32 | 52 (28%) | 132 |
1e-05 (0.00628) |
0.00134 (0.689) |
0.397 (1.00) |
0.251 (1.00) |
0.0101 (1.00) |
0.155 (1.00) |
0.176 (1.00) |
0.0649 (1.00) |
0.015 (1.00) |
0.0177 (1.00) |
del 2q14 3 | 9 (5%) | 175 |
4e-05 (0.0229) |
0.358 (1.00) |
1 (1.00) |
0.478 (1.00) |
0.486 (1.00) |
0.721 (1.00) |
0.0955 (1.00) |
0.605 (1.00) |
||
del 3p21 31 | 51 (28%) | 133 |
6e-05 (0.0338) |
0.114 (1.00) |
0.333 (1.00) |
0.58 (1.00) |
0.211 (1.00) |
0.789 (1.00) |
0.0963 (1.00) |
0.0429 (1.00) |
0.0495 (1.00) |
0.214 (1.00) |
del 5q14 2 | 35 (19%) | 149 |
1e-05 (0.00628) |
0.142 (1.00) |
0.0846 (1.00) |
0.218 (1.00) |
0.192 (1.00) |
0.219 (1.00) |
0.104 (1.00) |
0.178 (1.00) |
0.0786 (1.00) |
0.0883 (1.00) |
del 8p23 2 | 58 (32%) | 126 |
0.00022 (0.122) |
0.0219 (1.00) |
0.111 (1.00) |
0.091 (1.00) |
0.357 (1.00) |
0.315 (1.00) |
0.173 (1.00) |
0.151 (1.00) |
0.0216 (1.00) |
0.0652 (1.00) |
del 10q23 33 | 35 (19%) | 149 |
0.00041 (0.223) |
0.321 (1.00) |
0.33 (1.00) |
0.485 (1.00) |
0.45 (1.00) |
0.179 (1.00) |
0.757 (1.00) |
0.54 (1.00) |
0.632 (1.00) |
0.0891 (1.00) |
del 12q12 | 25 (14%) | 159 |
1e-05 (0.00628) |
0.00072 (0.379) |
0.00739 (1.00) |
0.0231 (1.00) |
0.00412 (1.00) |
0.00093 (0.488) |
0.00189 (0.953) |
0.0204 (1.00) |
0.0018 (0.913) |
0.00311 (1.00) |
del 12q21 33 | 44 (24%) | 140 |
1e-05 (0.00628) |
0.00058 (0.31) |
0.00532 (1.00) |
0.00576 (1.00) |
0.00737 (1.00) |
0.00183 (0.926) |
0.00615 (1.00) |
0.00615 (1.00) |
0.00364 (1.00) |
0.0013 (0.671) |
del 15q15 1 | 36 (20%) | 148 |
1e-05 (0.00628) |
0.00109 (0.57) |
0.469 (1.00) |
0.779 (1.00) |
0.0459 (1.00) |
0.00311 (1.00) |
0.183 (1.00) |
0.0324 (1.00) |
0.125 (1.00) |
0.00579 (1.00) |
del 22q13 32 | 62 (34%) | 122 |
1e-05 (0.00628) |
0.00144 (0.739) |
0.657 (1.00) |
0.861 (1.00) |
0.153 (1.00) |
0.177 (1.00) |
0.155 (1.00) |
0.282 (1.00) |
0.00049 (0.263) |
0.0434 (1.00) |
del xp21 1 | 29 (16%) | 155 |
4e-05 (0.0229) |
0.0714 (1.00) |
0.497 (1.00) |
0.702 (1.00) |
0.291 (1.00) |
0.454 (1.00) |
0.0551 (1.00) |
0.782 (1.00) |
0.0144 (1.00) |
0.479 (1.00) |
del xq11 2 | 23 (12%) | 161 |
1e-05 (0.00628) |
0.0024 (1.00) |
0.3 (1.00) |
0.326 (1.00) |
0.00927 (1.00) |
0.0213 (1.00) |
0.00426 (1.00) |
0.0229 (1.00) |
0.00468 (1.00) |
0.0153 (1.00) |
amp 1p34 2 | 13 (7%) | 171 |
0.113 (1.00) |
1 (1.00) |
0.119 (1.00) |
0.0902 (1.00) |
0.863 (1.00) |
0.266 (1.00) |
0.931 (1.00) |
0.917 (1.00) |
0.473 (1.00) |
0.426 (1.00) |
amp 1p12 | 27 (15%) | 157 |
0.546 (1.00) |
0.953 (1.00) |
0.121 (1.00) |
0.263 (1.00) |
0.264 (1.00) |
0.444 (1.00) |
0.473 (1.00) |
0.264 (1.00) |
0.454 (1.00) |
0.0986 (1.00) |
amp 3p12 2 | 12 (7%) | 172 |
0.00777 (1.00) |
0.69 (1.00) |
0.833 (1.00) |
0.794 (1.00) |
1 (1.00) |
0.922 (1.00) |
0.834 (1.00) |
1 (1.00) |
1 (1.00) |
0.717 (1.00) |
amp 4p16 3 | 15 (8%) | 169 |
0.0458 (1.00) |
1 (1.00) |
0.592 (1.00) |
0.606 (1.00) |
0.0326 (1.00) |
0.0192 (1.00) |
0.131 (1.00) |
0.0257 (1.00) |
0.644 (1.00) |
0.137 (1.00) |
amp 6p21 31 | 12 (7%) | 172 |
0.00232 (1.00) |
0.24 (1.00) |
0.841 (1.00) |
0.929 (1.00) |
0.294 (1.00) |
0.855 (1.00) |
0.48 (1.00) |
0.715 (1.00) |
0.00889 (1.00) |
0.146 (1.00) |
amp 8p11 22 | 34 (18%) | 150 |
0.0175 (1.00) |
0.178 (1.00) |
0.102 (1.00) |
0.0797 (1.00) |
1 (1.00) |
0.696 (1.00) |
0.812 (1.00) |
0.688 (1.00) |
0.0496 (1.00) |
0.506 (1.00) |
amp 8p11 21 | 34 (18%) | 150 |
0.00647 (1.00) |
0.177 (1.00) |
0.172 (1.00) |
0.0888 (1.00) |
0.593 (1.00) |
0.698 (1.00) |
0.859 (1.00) |
0.213 (1.00) |
0.0213 (1.00) |
0.169 (1.00) |
amp 9p13 3 | 24 (13%) | 160 |
0.00243 (1.00) |
0.686 (1.00) |
0.393 (1.00) |
0.0405 (1.00) |
0.145 (1.00) |
0.392 (1.00) |
0.625 (1.00) |
0.0807 (1.00) |
0.74 (1.00) |
0.587 (1.00) |
amp 15q26 1 | 22 (12%) | 162 |
0.0109 (1.00) |
0.0372 (1.00) |
0.0354 (1.00) |
0.121 (1.00) |
0.21 (1.00) |
0.11 (1.00) |
0.45 (1.00) |
0.536 (1.00) |
0.363 (1.00) |
0.301 (1.00) |
amp 17p11 2 | 15 (8%) | 169 |
0.00213 (1.00) |
0.119 (1.00) |
0.511 (1.00) |
0.55 (1.00) |
0.182 (1.00) |
0.0505 (1.00) |
0.0473 (1.00) |
0.11 (1.00) |
0.886 (1.00) |
0.312 (1.00) |
amp 19p13 2 | 18 (10%) | 166 |
0.00174 (0.886) |
0.117 (1.00) |
0.712 (1.00) |
0.744 (1.00) |
0.901 (1.00) |
0.71 (1.00) |
0.00438 (1.00) |
0.111 (1.00) |
0.107 (1.00) |
0.267 (1.00) |
amp xp22 11 | 11 (6%) | 173 |
0.0151 (1.00) |
0.264 (1.00) |
0.498 (1.00) |
0.00847 (1.00) |
0.11 (1.00) |
0.0769 (1.00) |
0.0367 (1.00) |
0.0909 (1.00) |
0.842 (1.00) |
0.00847 (1.00) |
del 4p15 31 | 30 (16%) | 154 |
0.0115 (1.00) |
0.0285 (1.00) |
0.218 (1.00) |
0.487 (1.00) |
0.0344 (1.00) |
0.0266 (1.00) |
0.459 (1.00) |
0.00987 (1.00) |
0.514 (1.00) |
0.0107 (1.00) |
del 4q22 1 | 27 (15%) | 157 |
0.13 (1.00) |
0.0331 (1.00) |
0.307 (1.00) |
0.434 (1.00) |
0.00542 (1.00) |
0.0894 (1.00) |
0.133 (1.00) |
0.00175 (0.889) |
0.221 (1.00) |
0.00546 (1.00) |
del 4q34 3 | 35 (19%) | 149 |
0.00434 (1.00) |
0.15 (1.00) |
0.146 (1.00) |
0.258 (1.00) |
0.187 (1.00) |
0.621 (1.00) |
0.713 (1.00) |
0.172 (1.00) |
0.615 (1.00) |
0.232 (1.00) |
del 7q36 1 | 15 (8%) | 169 |
0.00186 (0.939) |
0.256 (1.00) |
0.199 (1.00) |
0.0501 (1.00) |
0.213 (1.00) |
0.605 (1.00) |
0.906 (1.00) |
0.344 (1.00) |
0.0567 (1.00) |
0.25 (1.00) |
del 9q22 33 | 47 (26%) | 137 |
0.0651 (1.00) |
0.909 (1.00) |
0.258 (1.00) |
0.302 (1.00) |
0.135 (1.00) |
0.43 (1.00) |
0.0812 (1.00) |
0.1 (1.00) |
0.154 (1.00) |
0.116 (1.00) |
del 10p15 3 | 41 (22%) | 143 |
0.00112 (0.584) |
0.0478 (1.00) |
0.454 (1.00) |
0.586 (1.00) |
0.0282 (1.00) |
0.013 (1.00) |
0.107 (1.00) |
0.025 (1.00) |
0.0591 (1.00) |
0.00697 (1.00) |
del 11p15 4 | 29 (16%) | 155 |
0.00065 (0.344) |
0.837 (1.00) |
0.00349 (1.00) |
0.045 (1.00) |
0.927 (1.00) |
0.785 (1.00) |
0.464 (1.00) |
0.55 (1.00) |
0.171 (1.00) |
1 (1.00) |
del 13q14 2 | 20 (11%) | 164 |
0.003 (1.00) |
0.078 (1.00) |
0.867 (1.00) |
0.939 (1.00) |
0.063 (1.00) |
0.266 (1.00) |
0.122 (1.00) |
0.0621 (1.00) |
0.00228 (1.00) |
0.09 (1.00) |
del 14q11 2 | 20 (11%) | 164 |
0.00346 (1.00) |
0.126 (1.00) |
0.925 (1.00) |
0.653 (1.00) |
0.101 (1.00) |
0.132 (1.00) |
0.248 (1.00) |
0.249 (1.00) |
0.264 (1.00) |
0.535 (1.00) |
del 16q23 1 | 19 (10%) | 165 |
0.0152 (1.00) |
0.355 (1.00) |
0.408 (1.00) |
0.0206 (1.00) |
0.56 (1.00) |
0.0478 (1.00) |
0.299 (1.00) |
0.334 (1.00) |
0.15 (1.00) |
0.277 (1.00) |
del 18p11 31 | 54 (29%) | 130 |
0.349 (1.00) |
0.244 (1.00) |
0.644 (1.00) |
0.146 (1.00) |
0.612 (1.00) |
0.975 (1.00) |
0.19 (1.00) |
0.855 (1.00) |
0.592 (1.00) |
0.113 (1.00) |
del 19q13 33 | 22 (12%) | 162 |
0.00229 (1.00) |
0.108 (1.00) |
0.749 (1.00) |
0.939 (1.00) |
0.195 (1.00) |
0.227 (1.00) |
0.186 (1.00) |
0.0848 (1.00) |
0.255 (1.00) |
0.0719 (1.00) |
P value = 0.00042 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
AMP PEAK 3(1Q21.3) MUTATED | 34 | 7 | 6 |
AMP PEAK 3(1Q21.3) WILD-TYPE | 36 | 35 | 27 |
P value = 0.00036 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
AMP PEAK 3(1Q21.3) MUTATED | 35 | 13 | 10 |
AMP PEAK 3(1Q21.3) WILD-TYPE | 34 | 54 | 27 |
P value = 1e-04 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
AMP PEAK 4(2Q36.2) MUTATED | 3 | 19 | 4 |
AMP PEAK 4(2Q36.2) WILD-TYPE | 82 | 56 | 20 |
P value = 4e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
AMP PEAK 6(3Q26.2) MUTATED | 4 | 18 | 10 |
AMP PEAK 6(3Q26.2) WILD-TYPE | 81 | 57 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
AMP PEAK 9(7Q22.1) MUTATED | 12 | 28 | 16 |
AMP PEAK 9(7Q22.1) WILD-TYPE | 73 | 47 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
AMP PEAK 12(8Q24.21) MUTATED | 14 | 41 | 19 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 71 | 34 | 5 |
P value = 2e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
AMP PEAK 12(8Q24.21) MUTATED | 41 | 9 | 5 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 29 | 33 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
AMP PEAK 14(12P13.33) MUTATED | 2 | 15 | 22 |
AMP PEAK 14(12P13.33) WILD-TYPE | 83 | 60 | 2 |
P value = 0.00032 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
AMP PEAK 14(12P13.33) MUTATED | 21 | 7 | 0 |
AMP PEAK 14(12P13.33) WILD-TYPE | 49 | 35 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
AMP PEAK 15(12P11.21) MUTATED | 2 | 21 | 20 |
AMP PEAK 15(12P11.21) WILD-TYPE | 83 | 54 | 4 |
P value = 0.00043 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
AMP PEAK 15(12P11.21) MUTATED | 24 | 6 | 1 |
AMP PEAK 15(12P11.21) WILD-TYPE | 46 | 36 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
AMP PEAK 16(12Q15) MUTATED | 2 | 10 | 17 |
AMP PEAK 16(12Q15) WILD-TYPE | 83 | 65 | 7 |
P value = 5e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
AMP PEAK 19(17Q12) MUTATED | 4 | 20 | 7 |
AMP PEAK 19(17Q12) WILD-TYPE | 81 | 55 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
AMP PEAK 20(18Q11.2) MUTATED | 10 | 36 | 10 |
AMP PEAK 20(18Q11.2) WILD-TYPE | 75 | 39 | 14 |
P value = 6e-05 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
AMP PEAK 20(18Q11.2) MUTATED | 31 | 6 | 3 |
AMP PEAK 20(18Q11.2) WILD-TYPE | 39 | 36 | 30 |
P value = 0.00026 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
AMP PEAK 20(18Q11.2) MUTATED | 36 | 14 | 3 |
AMP PEAK 20(18Q11.2) WILD-TYPE | 50 | 33 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
AMP PEAK 22(19Q13.2) MUTATED | 8 | 28 | 11 |
AMP PEAK 22(19Q13.2) WILD-TYPE | 77 | 47 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
AMP PEAK 23(20P11.23) MUTATED | 7 | 15 | 16 |
AMP PEAK 23(20P11.23) WILD-TYPE | 78 | 60 | 8 |
P value = 2e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
AMP PEAK 25(XQ27.1) MUTATED | 2 | 9 | 10 |
AMP PEAK 25(XQ27.1) WILD-TYPE | 83 | 66 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 1(1P36.32) MUTATED | 12 | 26 | 14 |
DEL PEAK 1(1P36.32) WILD-TYPE | 73 | 49 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 2(1P36.11) MUTATED | 16 | 36 | 16 |
DEL PEAK 2(1P36.11) WILD-TYPE | 69 | 39 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
DEL PEAK 2(1P36.11) MUTATED | 38 | 13 | 2 |
DEL PEAK 2(1P36.11) WILD-TYPE | 32 | 29 | 31 |
P value = 4e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 3(2Q14.3) MUTATED | 0 | 3 | 6 |
DEL PEAK 3(2Q14.3) WILD-TYPE | 85 | 72 | 18 |
P value = 6e-05 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 4(3P21.31) MUTATED | 11 | 26 | 14 |
DEL PEAK 4(3P21.31) WILD-TYPE | 74 | 49 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 8(5Q14.2) MUTATED | 4 | 24 | 7 |
DEL PEAK 8(5Q14.2) WILD-TYPE | 81 | 51 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 9(6P25.2) MUTATED | 15 | 45 | 14 |
DEL PEAK 9(6P25.2) WILD-TYPE | 70 | 30 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
DEL PEAK 9(6P25.2) MUTATED | 44 | 8 | 6 |
DEL PEAK 9(6P25.2) WILD-TYPE | 26 | 34 | 27 |
P value = 0.00036 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
DEL PEAK 9(6P25.2) MUTATED | 53 | 10 | 7 |
DEL PEAK 9(6P25.2) WILD-TYPE | 49 | 32 | 26 |
P value = 0.00015 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
DEL PEAK 9(6P25.2) MUTATED | 46 | 18 | 6 |
DEL PEAK 9(6P25.2) WILD-TYPE | 40 | 29 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 10(6P22.2) MUTATED | 16 | 41 | 13 |
DEL PEAK 10(6P22.2) WILD-TYPE | 69 | 34 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
DEL PEAK 10(6P22.2) MUTATED | 41 | 8 | 6 |
DEL PEAK 10(6P22.2) WILD-TYPE | 29 | 34 | 27 |
P value = 0.00023 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
DEL PEAK 10(6P22.2) MUTATED | 45 | 15 | 6 |
DEL PEAK 10(6P22.2) WILD-TYPE | 41 | 32 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 11(6Q25.3) MUTATED | 21 | 54 | 16 |
DEL PEAK 11(6Q25.3) WILD-TYPE | 64 | 21 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
DEL PEAK 11(6Q25.3) MUTATED | 50 | 11 | 11 |
DEL PEAK 11(6Q25.3) WILD-TYPE | 20 | 31 | 22 |
P value = 0.00028 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
DEL PEAK 11(6Q25.3) MUTATED | 63 | 12 | 11 |
DEL PEAK 11(6Q25.3) WILD-TYPE | 39 | 30 | 22 |
P value = 2e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
DEL PEAK 11(6Q25.3) MUTATED | 47 | 17 | 21 |
DEL PEAK 11(6Q25.3) WILD-TYPE | 22 | 50 | 16 |
P value = 8e-05 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
DEL PEAK 11(6Q25.3) MUTATED | 54 | 22 | 9 |
DEL PEAK 11(6Q25.3) WILD-TYPE | 32 | 25 | 31 |
P value = 0.00022 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 13(8P23.2) MUTATED | 14 | 33 | 11 |
DEL PEAK 13(8P23.2) WILD-TYPE | 71 | 42 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 14(9P21.3) MUTATED | 31 | 69 | 16 |
DEL PEAK 14(9P21.3) WILD-TYPE | 54 | 6 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
DEL PEAK 14(9P21.3) MUTATED | 60 | 13 | 15 |
DEL PEAK 14(9P21.3) WILD-TYPE | 10 | 29 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
DEL PEAK 14(9P21.3) MUTATED | 68 | 26 | 15 |
DEL PEAK 14(9P21.3) WILD-TYPE | 15 | 22 | 31 |
P value = 5e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
DEL PEAK 14(9P21.3) MUTATED | 44 | 57 | 8 |
DEL PEAK 14(9P21.3) WILD-TYPE | 30 | 18 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 40 | 35 | 33 |
DEL PEAK 14(9P21.3) MUTATED | 60 | 20 | 18 | 11 |
DEL PEAK 14(9P21.3) WILD-TYPE | 9 | 20 | 17 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
DEL PEAK 14(9P21.3) MUTATED | 80 | 17 | 12 |
DEL PEAK 14(9P21.3) WILD-TYPE | 22 | 25 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
DEL PEAK 14(9P21.3) MUTATED | 60 | 26 | 22 |
DEL PEAK 14(9P21.3) WILD-TYPE | 9 | 41 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
DEL PEAK 14(9P21.3) MUTATED | 68 | 28 | 12 |
DEL PEAK 14(9P21.3) WILD-TYPE | 18 | 19 | 28 |
P value = 0.00041 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 17(10Q23.33) MUTATED | 7 | 18 | 10 |
DEL PEAK 17(10Q23.33) WILD-TYPE | 78 | 57 | 14 |
P value = 3e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 19(12P13.1) MUTATED | 4 | 23 | 2 |
DEL PEAK 19(12P13.1) WILD-TYPE | 81 | 52 | 22 |
P value = 2e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
DEL PEAK 19(12P13.1) MUTATED | 21 | 0 | 2 |
DEL PEAK 19(12P13.1) WILD-TYPE | 49 | 42 | 31 |
P value = 6e-05 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
DEL PEAK 19(12P13.1) MUTATED | 25 | 0 | 2 |
DEL PEAK 19(12P13.1) WILD-TYPE | 77 | 42 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 20(12Q12) MUTATED | 1 | 23 | 1 |
DEL PEAK 20(12Q12) WILD-TYPE | 84 | 52 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 21(12Q21.33) MUTATED | 6 | 33 | 5 |
DEL PEAK 21(12Q21.33) WILD-TYPE | 79 | 42 | 19 |
P value = 2e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 22(12Q24.33) MUTATED | 7 | 30 | 6 |
DEL PEAK 22(12Q24.33) WILD-TYPE | 78 | 45 | 18 |
P value = 9e-05 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
DEL PEAK 22(12Q24.33) MUTATED | 29 | 10 | 1 |
DEL PEAK 22(12Q24.33) WILD-TYPE | 57 | 37 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 25(15Q15.1) MUTATED | 3 | 21 | 12 |
DEL PEAK 25(15Q15.1) WILD-TYPE | 82 | 54 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 27(17P12) MUTATED | 12 | 66 | 11 |
DEL PEAK 27(17P12) WILD-TYPE | 73 | 9 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
DEL PEAK 27(17P12) MUTATED | 52 | 6 | 10 |
DEL PEAK 27(17P12) WILD-TYPE | 18 | 36 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
DEL PEAK 27(17P12) MUTATED | 54 | 24 | 8 |
DEL PEAK 27(17P12) WILD-TYPE | 29 | 24 | 38 |
P value = 4e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
DEL PEAK 27(17P12) MUTATED | 40 | 43 | 3 |
DEL PEAK 27(17P12) WILD-TYPE | 34 | 32 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 40 | 35 | 33 |
DEL PEAK 27(17P12) MUTATED | 50 | 18 | 11 | 7 |
DEL PEAK 27(17P12) WILD-TYPE | 19 | 22 | 24 | 26 |
P value = 5e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
DEL PEAK 27(17P12) MUTATED | 63 | 16 | 7 |
DEL PEAK 27(17P12) WILD-TYPE | 39 | 26 | 26 |
P value = 2e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
DEL PEAK 27(17P12) MUTATED | 50 | 17 | 18 |
DEL PEAK 27(17P12) WILD-TYPE | 19 | 50 | 19 |
P value = 2e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
DEL PEAK 27(17P12) MUTATED | 54 | 24 | 7 |
DEL PEAK 27(17P12) WILD-TYPE | 32 | 23 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 28(17Q22) MUTATED | 4 | 40 | 5 |
DEL PEAK 28(17Q22) WILD-TYPE | 81 | 35 | 19 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
DEL PEAK 28(17Q22) MUTATED | 33 | 3 | 4 |
DEL PEAK 28(17Q22) WILD-TYPE | 37 | 39 | 29 |
P value = 0.00046 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 33 | 21 | 17 | 21 | 13 |
DEL PEAK 28(17Q22) MUTATED | 18 | 5 | 2 | 1 | 5 |
DEL PEAK 28(17Q22) WILD-TYPE | 15 | 16 | 15 | 20 | 8 |
P value = 0.00044 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 20 | 21 | 30 | 16 | 18 |
DEL PEAK 28(17Q22) MUTATED | 11 | 6 | 12 | 2 | 0 |
DEL PEAK 28(17Q22) WILD-TYPE | 9 | 15 | 18 | 14 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
DEL PEAK 28(17Q22) MUTATED | 31 | 7 | 8 |
DEL PEAK 28(17Q22) WILD-TYPE | 38 | 60 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 30(18Q21.2) MUTATED | 41 | 70 | 15 |
DEL PEAK 30(18Q21.2) WILD-TYPE | 44 | 5 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
DEL PEAK 30(18Q21.2) MUTATED | 60 | 17 | 20 |
DEL PEAK 30(18Q21.2) WILD-TYPE | 10 | 25 | 13 |
P value = 6e-05 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
DEL PEAK 30(18Q21.2) MUTATED | 67 | 34 | 19 |
DEL PEAK 30(18Q21.2) WILD-TYPE | 16 | 14 | 27 |
P value = 4e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
DEL PEAK 30(18Q21.2) MUTATED | 51 | 60 | 9 |
DEL PEAK 30(18Q21.2) WILD-TYPE | 23 | 15 | 19 |
P value = 0.00017 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 40 | 35 | 33 |
DEL PEAK 30(18Q21.2) MUTATED | 59 | 26 | 19 | 16 |
DEL PEAK 30(18Q21.2) WILD-TYPE | 10 | 14 | 16 | 17 |
P value = 1e-04 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
DEL PEAK 30(18Q21.2) MUTATED | 82 | 25 | 13 |
DEL PEAK 30(18Q21.2) WILD-TYPE | 20 | 17 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
DEL PEAK 30(18Q21.2) MUTATED | 69 | 37 | 11 |
DEL PEAK 30(18Q21.2) WILD-TYPE | 17 | 10 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 31(19P13.3) MUTATED | 4 | 25 | 7 |
DEL PEAK 31(19P13.3) WILD-TYPE | 81 | 50 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
DEL PEAK 31(19P13.3) MUTATED | 23 | 0 | 2 |
DEL PEAK 31(19P13.3) WILD-TYPE | 47 | 42 | 31 |
P value = 5e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
DEL PEAK 31(19P13.3) MUTATED | 25 | 4 | 6 |
DEL PEAK 31(19P13.3) WILD-TYPE | 44 | 63 | 31 |
P value = 2e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 32(19P13.2) MUTATED | 2 | 19 | 7 |
DEL PEAK 32(19P13.2) WILD-TYPE | 83 | 56 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
DEL PEAK 32(19P13.2) MUTATED | 19 | 0 | 1 |
DEL PEAK 32(19P13.2) WILD-TYPE | 51 | 42 | 32 |
P value = 0.00031 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
DEL PEAK 32(19P13.2) MUTATED | 24 | 3 | 0 |
DEL PEAK 32(19P13.2) WILD-TYPE | 78 | 39 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
DEL PEAK 32(19P13.2) MUTATED | 21 | 1 | 4 |
DEL PEAK 32(19P13.2) WILD-TYPE | 48 | 66 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 34(21Q11.2) MUTATED | 12 | 40 | 10 |
DEL PEAK 34(21Q11.2) WILD-TYPE | 73 | 35 | 14 |
P value = 0.00042 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
DEL PEAK 34(21Q11.2) MUTATED | 35 | 8 | 6 |
DEL PEAK 34(21Q11.2) WILD-TYPE | 35 | 34 | 27 |
P value = 0.00037 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
DEL PEAK 34(21Q11.2) MUTATED | 33 | 11 | 12 |
DEL PEAK 34(21Q11.2) WILD-TYPE | 36 | 56 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 35(22Q13.31) MUTATED | 8 | 40 | 12 |
DEL PEAK 35(22Q13.31) WILD-TYPE | 77 | 35 | 12 |
P value = 0.00036 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 42 | 33 |
DEL PEAK 35(22Q13.31) MUTATED | 34 | 7 | 6 |
DEL PEAK 35(22Q13.31) WILD-TYPE | 36 | 35 | 27 |
P value = 9e-05 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
DEL PEAK 35(22Q13.31) MUTATED | 29 | 9 | 18 |
DEL PEAK 35(22Q13.31) WILD-TYPE | 40 | 58 | 19 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 36(22Q13.32) MUTATED | 9 | 40 | 13 |
DEL PEAK 36(22Q13.32) WILD-TYPE | 76 | 35 | 11 |
P value = 4e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 37(XP21.1) MUTATED | 3 | 18 | 8 |
DEL PEAK 37(XP21.1) WILD-TYPE | 82 | 57 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
DEL PEAK 38(XQ11.2) MUTATED | 0 | 16 | 7 |
DEL PEAK 38(XQ11.2) WILD-TYPE | 85 | 59 | 17 |
-
Copy number data file = transformed.cor.cli.txt
-
Molecular subtype file = PAAD-TP.transferedmergedcluster.txt
-
Number of patients = 184
-
Number of significantly focal cnvs = 63
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.