Correlation between gene mutation status and molecular subtypes

Pancreatic Adenocarcinoma (Primary solid tumor)

17 October 2014 | analyses__2014_10_17

Maintainer Information

Citation Information

Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)

Cite as Broad Institute TCGA Genome Data Analysis Center (2014): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C17080BR

Overview

Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 148 genes and 10 molecular subtypes across 41 patients, no significant finding detected with P value < 0.05 and Q value < 0.25.

No gene mutations related to molecuar subtypes.

Results

Overview of the results

Table 1. Get Full Table Overview of the association between mutation status of 148 genes and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, no significant finding detected.


		Clinical Features	CN CNMF	METHLYATION CNMF	RPPA CNMF	RPPA CHIERARCHICAL	MRNASEQ CNMF	MRNASEQ CHIERARCHICAL	MIRSEQ CNMF	MIRSEQ CHIERARCHICAL	MIRSEQ MATURE CNMF	MIRSEQ MATURE CHIERARCHICAL
	nMutated (%)	nWild-Type	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test
KRAS	30 (73%)	11	0.0753 (1.00)	0.723 (1.00)	0.394 (1.00)	0.54 (1.00)	0.562 (1.00)	1 (1.00)	0.903 (1.00)	0.218 (1.00)	0.3 (1.00)	0.464 (1.00)
TP53	24 (59%)	17	0.00223 (1.00)	0.309 (1.00)	0.0584 (1.00)	0.0882 (1.00)	0.653 (1.00)	1 (1.00)	1 (1.00)	0.883 (1.00)	0.792 (1.00)	0.793 (1.00)
C19ORF55	7 (17%)	34	0.819 (1.00)	0.317 (1.00)	0.157 (1.00)	0.623 (1.00)	0.835 (1.00)	0.847 (1.00)	0.627 (1.00)	0.389 (1.00)	1 (1.00)	1 (1.00)
B4GALT2	5 (12%)	36	0.434 (1.00)	1 (1.00)	0.859 (1.00)	1 (1.00)	0.551 (1.00)	0.676 (1.00)	0.823 (1.00)	1 (1.00)	0.814 (1.00)	0.529 (1.00)
CDKN2A	7 (17%)	34	0.00682 (1.00)	0.0627 (1.00)	0.637 (1.00)	0.117 (1.00)	0.618 (1.00)	0.702 (1.00)	0.378 (1.00)	0.313 (1.00)	0.0411 (1.00)	0.571 (1.00)
NFIL3	6 (15%)	35	0.797 (1.00)	0.447 (1.00)	0.343 (1.00)	0.206 (1.00)	1 (1.00)	0.409 (1.00)	0.624 (1.00)	0.248 (1.00)	0.699 (1.00)	0.398 (1.00)
OTOF	9 (22%)	32	0.0771 (1.00)	0.421 (1.00)	0.343 (1.00)	0.391 (1.00)	0.866 (1.00)	1 (1.00)	0.638 (1.00)	1 (1.00)	0.637 (1.00)	0.861 (1.00)
IRS1	6 (15%)	35	1 (1.00)	0.539 (1.00)	0.735 (1.00)	0.229 (1.00)	0.155 (1.00)	0.267 (1.00)	0.141 (1.00)	0.134 (1.00)	0.23 (1.00)	0.249 (1.00)
GAS2L2	6 (15%)	35	1 (1.00)	0.842 (1.00)	0.513 (1.00)	0.904 (1.00)	1 (1.00)	1 (1.00)	0.875 (1.00)	1 (1.00)	1 (1.00)	0.615 (1.00)
RBM10	6 (15%)	35	0.387 (1.00)	0.122 (1.00)	0.2 (1.00)	0.694 (1.00)	0.3 (1.00)	0.261 (1.00)	0.161 (1.00)	0.164 (1.00)	0.815 (1.00)	0.0434 (1.00)
APP	6 (15%)	35	0.29 (1.00)	0.739 (1.00)	1 (1.00)	0.59 (1.00)	0.83 (1.00)	0.542 (1.00)	0.468 (1.00)	0.459 (1.00)	1 (1.00)	1 (1.00)
IPP	5 (12%)	36	0.569 (1.00)	0.398 (1.00)	0.508 (1.00)	0.0974 (1.00)	0.224 (1.00)	0.156 (1.00)	0.195 (1.00)	0.0793 (1.00)	1 (1.00)	0.0777 (1.00)
MAMLD1	7 (17%)	34	1 (1.00)	1 (1.00)	0.94 (1.00)	0.907 (1.00)	0.626 (1.00)	0.544 (1.00)	0.938 (1.00)	0.554 (1.00)	0.849 (1.00)	1 (1.00)
ARHGAP18	4 (10%)	37	1 (1.00)	0.173 (1.00)			1 (1.00)	0.352 (1.00)	0.681 (1.00)	0.417 (1.00)	1 (1.00)	0.345 (1.00)
PHF8	5 (12%)	36	0.161 (1.00)	0.193 (1.00)	0.634 (1.00)	0.467 (1.00)	0.151 (1.00)	0.0994 (1.00)	0.0641 (1.00)	0.575 (1.00)	0.33 (1.00)	0.554 (1.00)
THBS4	6 (15%)	35	0.214 (1.00)	1 (1.00)	0.733 (1.00)	1 (1.00)	0.349 (1.00)	1 (1.00)	0.853 (1.00)	1 (1.00)	0.698 (1.00)	1 (1.00)
SMAD4	7 (17%)	34	0.82 (1.00)	0.49 (1.00)	0.233 (1.00)	0.355 (1.00)	0.274 (1.00)	0.489 (1.00)	0.3 (1.00)	0.668 (1.00)	0.138 (1.00)	0.571 (1.00)
PTPRF	7 (17%)	34	0.554 (1.00)	0.488 (1.00)	0.889 (1.00)	0.951 (1.00)	0.55 (1.00)	0.732 (1.00)	0.214 (1.00)	0.843 (1.00)	0.853 (1.00)	0.164 (1.00)
MED12	6 (15%)	35	0.0364 (1.00)	0.182 (1.00)	0.242 (1.00)	0.929 (1.00)	0.349 (1.00)	0.41 (1.00)	0.206 (1.00)	0.387 (1.00)	0.842 (1.00)	0.834 (1.00)
BMP2K	4 (10%)	37	0.718 (1.00)	0.805 (1.00)	0.141 (1.00)	0.876 (1.00)	0.5 (1.00)	0.637 (1.00)	0.204 (1.00)	0.577 (1.00)	1 (1.00)	0.614 (1.00)
ZMYM5	4 (10%)	37	1 (1.00)	0.66 (1.00)	0.609 (1.00)	0.763 (1.00)	0.643 (1.00)	1 (1.00)	1 (1.00)	0.575 (1.00)	0.772 (1.00)	0.612 (1.00)
SYT15	4 (10%)	37	0.102 (1.00)	0.391 (1.00)	0.428 (1.00)	0.648 (1.00)	0.813 (1.00)	1 (1.00)	0.684 (1.00)	1 (1.00)	0.771 (1.00)	0.801 (1.00)
PLAU	4 (10%)	37	0.163 (1.00)	0.519 (1.00)	1 (1.00)	0.899 (1.00)	0.497 (1.00)	0.633 (1.00)	0.204 (1.00)	0.734 (1.00)	0.317 (1.00)	0.118 (1.00)
MEPCE	4 (10%)	37	0.353 (1.00)	0.659 (1.00)	0.428 (1.00)	0.648 (1.00)	0.645 (1.00)	0.488 (1.00)	1 (1.00)	0.574 (1.00)	0.333 (1.00)	1 (1.00)
ZMIZ1	5 (12%)	36	0.569 (1.00)	1 (1.00)	0.656 (1.00)	0.493 (1.00)	0.83 (1.00)	0.827 (1.00)	0.754 (1.00)	1 (1.00)	1 (1.00)	0.827 (1.00)
SLC39A5	4 (10%)	37	0.104 (1.00)	0.229 (1.00)			1 (1.00)	0.794 (1.00)	0.125 (1.00)	0.734 (1.00)	0.44 (1.00)	0.8 (1.00)
GUCY2F	5 (12%)	36	0.0757 (1.00)	0.397 (1.00)	0.386 (1.00)	0.823 (1.00)	1 (1.00)	1 (1.00)	0.195 (1.00)	1 (1.00)	0.515 (1.00)	0.829 (1.00)
EDC4	5 (12%)	36	0.434 (1.00)	0.473 (1.00)	0.862 (1.00)	0.825 (1.00)	0.813 (1.00)	1 (1.00)	0.877 (1.00)	1 (1.00)	0.594 (1.00)	0.612 (1.00)
SEH1L	3 (7%)	38	0.107 (1.00)	0.775 (1.00)			0.0718 (1.00)	0.755 (1.00)	0.504 (1.00)	1 (1.00)	0.713 (1.00)	0.406 (1.00)
SLC4A3	3 (7%)	38	0.666 (1.00)	0.425 (1.00)	1 (1.00)	0.898 (1.00)	0.567 (1.00)	0.111 (1.00)	0.702 (1.00)	1 (1.00)	1 (1.00)	0.0431 (1.00)
CD99L2	4 (10%)	37	1 (1.00)	0.521 (1.00)			0.498 (1.00)	0.634 (1.00)	0.205 (1.00)	0.736 (1.00)	0.769 (1.00)	0.348 (1.00)
SBNO1	4 (10%)	37	0.495 (1.00)	0.12 (1.00)	0.812 (1.00)	0.7 (1.00)	0.646 (1.00)	1 (1.00)	0.532 (1.00)	0.576 (1.00)	0.208 (1.00)	1 (1.00)
NPNT	3 (7%)	38	0.4 (1.00)	0.0343 (1.00)	0.899 (1.00)	0.255 (1.00)	0.391 (1.00)	0.528 (1.00)	0.256 (1.00)	0.432 (1.00)	1 (1.00)	0.258 (1.00)
TMEM175	5 (12%)	36	0.432 (1.00)	0.838 (1.00)	0.103 (1.00)	0.207 (1.00)	0.552 (1.00)	0.681 (1.00)	0.626 (1.00)	1 (1.00)	0.0636 (1.00)	0.401 (1.00)
IRX4	4 (10%)	37	0.719 (1.00)	0.23 (1.00)			0.112 (1.00)	0.185 (1.00)	0.274 (1.00)	0.0931 (1.00)	0.713 (1.00)	0.0743 (1.00)
CLCC1	3 (7%)	38	0.397 (1.00)	0.19 (1.00)			0.761 (1.00)	0.526 (1.00)	0.207 (1.00)	0.276 (1.00)	0.715 (1.00)	0.0735 (1.00)
BTNL8	4 (10%)	37	1 (1.00)	0.391 (1.00)	0.764 (1.00)	0.701 (1.00)	0.0735 (1.00)	0.0494 (1.00)	0.0346 (1.00)	0.416 (1.00)	0.592 (1.00)	0.17 (1.00)
SYNGAP1	5 (12%)	36	0.104 (1.00)	1 (1.00)	0.61 (1.00)	0.763 (1.00)	0.549 (1.00)	0.827 (1.00)	0.754 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)
F8	4 (10%)	37	0.492 (1.00)	0.12 (1.00)	0.385 (1.00)	0.504 (1.00)	0.813 (1.00)	1 (1.00)	0.681 (1.00)	1 (1.00)	0.208 (1.00)	0.614 (1.00)
SORBS2	6 (15%)	35	0.0365 (1.00)	0.184 (1.00)	0.653 (1.00)	0.489 (1.00)	0.829 (1.00)	0.547 (1.00)	0.468 (1.00)	0.457 (1.00)	1 (1.00)	1 (1.00)
NR4A3	4 (10%)	37	0.352 (1.00)	0.66 (1.00)	0.428 (1.00)	0.646 (1.00)	0.643 (1.00)	0.489 (1.00)	1 (1.00)	0.577 (1.00)	0.77 (1.00)	1 (1.00)
ZNF337	4 (10%)	37	0.493 (1.00)	0.394 (1.00)	0.764 (1.00)	0.701 (1.00)	0.363 (1.00)	0.0471 (1.00)	0.434 (1.00)	0.416 (1.00)	0.596 (1.00)	0.0122 (1.00)
TAOK2	4 (10%)	37	0.163 (1.00)	0.231 (1.00)	0.19 (1.00)	0.706 (1.00)	0.0053 (1.00)	0.00295 (1.00)	0.022 (1.00)	0.092 (1.00)	0.321 (1.00)	0.12 (1.00)
UNC5A	4 (10%)	37	0.715 (1.00)	0.804 (1.00)	0.545 (1.00)	1 (1.00)	0.76 (1.00)	0.261 (1.00)	0.433 (1.00)	0.433 (1.00)	1 (1.00)	0.719 (1.00)
TNFSF9	4 (10%)	37	0.718 (1.00)	1 (1.00)	1 (1.00)	0.9 (1.00)	0.815 (1.00)	1 (1.00)	0.876 (1.00)	1 (1.00)	1 (1.00)	0.802 (1.00)
TEX2	4 (10%)	37	0.162 (1.00)	0.523 (1.00)	0.612 (1.00)	0.763 (1.00)	0.212 (1.00)	0.139 (1.00)	0.436 (1.00)	0.736 (1.00)	1 (1.00)	0.345 (1.00)
RBM43	3 (7%)	38	0.663 (1.00)	0.427 (1.00)
CIR1	3 (7%)	38	0.109 (1.00)	1 (1.00)			0.0706 (1.00)	0.754 (1.00)	0.506 (1.00)	1 (1.00)	0.487 (1.00)	0.404 (1.00)
TOX4	4 (10%)	37	0.355 (1.00)	0.657 (1.00)	0.735 (1.00)	0.704 (1.00)	0.495 (1.00)	0.634 (1.00)	0.438 (1.00)	0.733 (1.00)	0.595 (1.00)	0.346 (1.00)
HIBCH	3 (7%)	38	0.108 (1.00)	0.189 (1.00)	0.288 (1.00)	1 (1.00)	0.76 (1.00)	0.525 (1.00)	0.308 (1.00)	0.279 (1.00)	0.0861 (1.00)	0.718 (1.00)
CRAT	3 (7%)	38	0.395 (1.00)	0.19 (1.00)			0.00352 (1.00)	0.0248 (1.00)	0.00999 (1.00)	0.278 (1.00)	0.0871 (1.00)	0.719 (1.00)
SRP14	3 (7%)	38	0.109 (1.00)	0.573 (1.00)			0.567 (1.00)	1 (1.00)	0.31 (1.00)	1 (1.00)	0.144 (1.00)	1 (1.00)
PDZD7	4 (10%)	37	0.719 (1.00)	1 (1.00)	0.809 (1.00)	0.545 (1.00)	1 (1.00)	1 (1.00)	0.877 (1.00)	1 (1.00)	1 (1.00)	0.407 (1.00)
POP5	3 (7%)	38	0.275 (1.00)	0.421 (1.00)	1 (1.00)	0.9 (1.00)	0.76 (1.00)	0.756 (1.00)	0.701 (1.00)	1 (1.00)	0.485 (1.00)	1 (1.00)
UNC5D	3 (7%)	38	1 (1.00)	0.425 (1.00)	1 (1.00)	0.898 (1.00)	0.76 (1.00)	0.755 (1.00)	0.703 (1.00)	1 (1.00)	1 (1.00)	0.405 (1.00)
FAM47C	5 (12%)	36	1 (1.00)	1 (1.00)	0.939 (1.00)	0.303 (1.00)	0.377 (1.00)	1 (1.00)	0.625 (1.00)	0.258 (1.00)	1 (1.00)	0.673 (1.00)
TMEM184A	4 (10%)	37	0.715 (1.00)	0.525 (1.00)	0.463 (1.00)	0.0884 (1.00)	0.0447 (1.00)	0.0263 (1.00)	0.205 (1.00)	0.0359 (1.00)	1 (1.00)	0.0228 (1.00)
BEGAIN	4 (10%)	37	0.164 (1.00)	0.232 (1.00)			1 (1.00)	0.795 (1.00)	0.125 (1.00)	0.277 (1.00)	0.318 (1.00)	0.799 (1.00)
PASD1	5 (12%)	36	0.318 (1.00)	0.57 (1.00)	0.412 (1.00)	0.303 (1.00)	0.55 (1.00)	0.681 (1.00)	0.627 (1.00)	0.611 (1.00)	1 (1.00)	0.675 (1.00)
RBM45	4 (10%)	37	0.164 (1.00)	1 (1.00)	0.736 (1.00)	0.227 (1.00)	0.498 (1.00)	0.638 (1.00)	0.876 (1.00)	0.734 (1.00)	1 (1.00)	0.119 (1.00)
POM121	4 (10%)	37	0.719 (1.00)	0.805 (1.00)	1 (1.00)	0.63 (1.00)	1 (1.00)	0.637 (1.00)	0.602 (1.00)	0.277 (1.00)	0.771 (1.00)	0.346 (1.00)
EME2	3 (7%)	38	0.395 (1.00)	0.573 (1.00)	0.262 (1.00)	1 (1.00)	0.76 (1.00)	0.525 (1.00)	0.206 (1.00)	0.692 (1.00)	1 (1.00)	1 (1.00)
CUL4B	3 (7%)	38	0.399 (1.00)	0.775 (1.00)			0.0332 (1.00)	0.264 (1.00)	0.0936 (1.00)	0.28 (1.00)	0.713 (1.00)	0.118 (1.00)
DIAPH3	4 (10%)	37	1 (1.00)	0.657 (1.00)			1 (1.00)	0.795 (1.00)	0.48 (1.00)	0.575 (1.00)	1 (1.00)	1 (1.00)
IFT46	4 (10%)	37	0.163 (1.00)	1 (1.00)	0.068 (1.00)	0.3 (1.00)	0.76 (1.00)	0.526 (1.00)	0.43 (1.00)	0.692 (1.00)	1 (1.00)	1 (1.00)
OTUD4	5 (12%)	36	0.32 (1.00)	0.685 (1.00)	0.888 (1.00)	0.565 (1.00)	0.685 (1.00)	0.829 (1.00)	0.754 (1.00)	0.35 (1.00)	0.513 (1.00)	0.528 (1.00)
GABBR1	4 (10%)	37	0.105 (1.00)	0.393 (1.00)	0.605 (1.00)	0.421 (1.00)	1 (1.00)	1 (1.00)	0.681 (1.00)	1 (1.00)	0.771 (1.00)	0.613 (1.00)
MYH10	4 (10%)	37	0.163 (1.00)	0.522 (1.00)	0.812 (1.00)	1 (1.00)	0.495 (1.00)	0.139 (1.00)	0.877 (1.00)	0.736 (1.00)	1 (1.00)	0.118 (1.00)
ERF	4 (10%)	37	0.716 (1.00)	0.171 (1.00)	1 (1.00)	1 (1.00)	0.497 (1.00)	0.35 (1.00)	0.437 (1.00)	0.416 (1.00)	1 (1.00)	0.347 (1.00)
OR10A7	4 (10%)	37	0.718 (1.00)	1 (1.00)	0.762 (1.00)	0.494 (1.00)	1 (1.00)	0.755 (1.00)	0.824 (1.00)	1 (1.00)	0.334 (1.00)	1 (1.00)
BRDT	4 (10%)	37	0.163 (1.00)	1 (1.00)			0.499 (1.00)	0.635 (1.00)	0.435 (1.00)	0.734 (1.00)	1 (1.00)	0.121 (1.00)
CDHR5	4 (10%)	37	1 (1.00)	1 (1.00)	0.243 (1.00)	0.319 (1.00)	0.0449 (1.00)	0.139 (1.00)	0.436 (1.00)	0.734 (1.00)	0.0143 (1.00)	0.801 (1.00)
EPS8L3	3 (7%)	38	0.399 (1.00)	0.577 (1.00)	0.609 (1.00)	0.762 (1.00)
GPR25	3 (7%)	38	0.664 (1.00)	0.428 (1.00)			0.568 (1.00)	0.112 (1.00)	0.7 (1.00)	1 (1.00)	0.334 (1.00)	0.0412 (1.00)
PPARGC1B	3 (7%)	38	0.109 (1.00)	0.775 (1.00)			0.176 (1.00)	0.262 (1.00)	0.0946 (1.00)	0.28 (1.00)	0.713 (1.00)	0.115 (1.00)
FGF10	3 (7%)	38	0.172 (1.00)	0.288 (1.00)			1 (1.00)	1 (1.00)	0.822 (1.00)	0.692 (1.00)
SALL1	5 (12%)	36	1 (1.00)	1 (1.00)	0.304 (1.00)	0.341 (1.00)	1 (1.00)	1 (1.00)	0.877 (1.00)	1 (1.00)	0.772 (1.00)	0.614 (1.00)
VEPH1	4 (10%)	37	1 (1.00)	0.66 (1.00)	0.387 (1.00)	0.6 (1.00)	0.813 (1.00)	0.352 (1.00)	0.873 (1.00)	1 (1.00)	0.152 (1.00)	0.174 (1.00)
ATRX	3 (7%)	38	0.396 (1.00)	0.423 (1.00)			0.569 (1.00)	0.755 (1.00)	0.699 (1.00)	1 (1.00)	1 (1.00)	0.718 (1.00)
ST6GALNAC5	4 (10%)	37	0.162 (1.00)	0.806 (1.00)	0.305 (1.00)	0.338 (1.00)	0.645 (1.00)	0.488 (1.00)	0.76 (1.00)	0.574 (1.00)	1 (1.00)	1 (1.00)
DHX57	3 (7%)	38	1 (1.00)	1 (1.00)			1 (1.00)	1 (1.00)	1 (1.00)	0.691 (1.00)
GNL3L	3 (7%)	38	0.398 (1.00)	1 (1.00)	0.507 (1.00)	0.202 (1.00)	0.271 (1.00)	0.263 (1.00)	0.592 (1.00)	0.695 (1.00)	1 (1.00)	0.556 (1.00)
MST1	5 (12%)	36	1 (1.00)	1 (1.00)	0.424 (1.00)	0.647 (1.00)	0.551 (1.00)	0.261 (1.00)	0.624 (1.00)	0.614 (1.00)	0.515 (1.00)	0.397 (1.00)
GRB7	4 (10%)	37	0.247 (1.00)	0.12 (1.00)	0.0546 (1.00)	0.156 (1.00)	0.815 (1.00)	1 (1.00)	0.685 (1.00)	1 (1.00)	0.152 (1.00)	0.615 (1.00)
TMC4	5 (12%)	36	0.566 (1.00)	1 (1.00)	0.242 (1.00)	0.928 (1.00)	1 (1.00)	1 (1.00)	0.236 (1.00)	1 (1.00)	0.321 (1.00)	0.613 (1.00)
MED9	3 (7%)	38	1 (1.00)	1 (1.00)			0.76 (1.00)	0.528 (1.00)	0.428 (1.00)	0.434 (1.00)	1 (1.00)	0.72 (1.00)
WASF3	3 (7%)	38	0.665 (1.00)	1 (1.00)			0.759 (1.00)	0.528 (1.00)	0.429 (1.00)	0.43 (1.00)	0.482 (1.00)	0.255 (1.00)
GIT1	3 (7%)	38	1 (1.00)	0.425 (1.00)	1 (1.00)	0.898 (1.00)	0.758 (1.00)	0.756 (1.00)	0.699 (1.00)	1 (1.00)	1 (1.00)	0.403 (1.00)
SV2A	3 (7%)	38	0.665 (1.00)	0.428 (1.00)			1 (1.00)	0.757 (1.00)	0.825 (1.00)	1 (1.00)
UGP2	4 (10%)	37	0.719 (1.00)	0.803 (1.00)			0.178 (1.00)	0.526 (1.00)	0.208 (1.00)	0.433 (1.00)	0.716 (1.00)	0.72 (1.00)
ERCC3	3 (7%)	38	0.397 (1.00)	0.126 (1.00)			0.177 (1.00)	0.111 (1.00)	0.095 (1.00)	0.161 (1.00)	0.715 (1.00)	0.116 (1.00)
ARMCX3	3 (7%)	38	0.106 (1.00)	1 (1.00)	1 (1.00)	0.899 (1.00)	0.39 (1.00)	0.347 (1.00)	0.127 (1.00)	0.436 (1.00)	1 (1.00)	0.258 (1.00)
TMCO1	3 (7%)	38	1 (1.00)	0.287 (1.00)	0.42 (1.00)	0.647 (1.00)	0.566 (1.00)	0.754 (1.00)	0.699 (1.00)	0.69 (1.00)	0.334 (1.00)	0.409 (1.00)
HMX2	3 (7%)	38	0.396 (1.00)	0.775 (1.00)			0.0334 (1.00)	0.263 (1.00)	0.0935 (1.00)	0.278 (1.00)	0.716 (1.00)	0.117 (1.00)
AARS2	4 (10%)	37	0.718 (1.00)	1 (1.00)	0.609 (1.00)	0.763 (1.00)	0.213 (1.00)	0.138 (1.00)	0.431 (1.00)	0.733 (1.00)	1 (1.00)	0.0381 (1.00)
ALS2CR11	3 (7%)	38	1 (1.00)	0.774 (1.00)	1 (1.00)	0.898 (1.00)	0.567 (1.00)	0.753 (1.00)	0.502 (1.00)	1 (1.00)	1 (1.00)	0.406 (1.00)
ARFGAP3	3 (7%)	38	1 (1.00)	0.776 (1.00)			0.567 (1.00)	0.757 (1.00)	1 (1.00)	1 (1.00)	0.143 (1.00)	0.257 (1.00)
SMG7	3 (7%)	38	1 (1.00)	0.286 (1.00)	0.425 (1.00)	0.649 (1.00)	0.57 (1.00)	0.755 (1.00)	0.706 (1.00)	0.69 (1.00)	0.333 (1.00)	0.404 (1.00)
CHGA	3 (7%)	38	0.271 (1.00)	0.125 (1.00)			0.0695 (1.00)	0.111 (1.00)	0.0938 (1.00)	0.162 (1.00)	1 (1.00)	0.0412 (1.00)
FAM63B	3 (7%)	38	0.107 (1.00)	1 (1.00)			0.177 (1.00)	0.263 (1.00)	0.0946 (1.00)	0.278 (1.00)	0.484 (1.00)	0.117 (1.00)
VPS36	3 (7%)	38	1 (1.00)	1 (1.00)			0.568 (1.00)	1 (1.00)	1 (1.00)	0.69 (1.00)	1 (1.00)	1 (1.00)
MAP3K7	3 (7%)	38	0.398 (1.00)	0.776 (1.00)	0.812 (1.00)	1 (1.00)	0.0327 (1.00)	0.264 (1.00)	0.504 (1.00)	0.28 (1.00)	0.713 (1.00)	0.116 (1.00)
OTX1	4 (10%)	37	1 (1.00)	0.121 (1.00)	0.544 (1.00)	0.181 (1.00)	0.815 (1.00)	1 (1.00)	0.682 (1.00)	1 (1.00)	0.153 (1.00)	0.614 (1.00)
THBS1	3 (7%)	38	1 (1.00)	1 (1.00)			0.76 (1.00)	0.527 (1.00)	0.43 (1.00)	0.434 (1.00)
INTS7	3 (7%)	38	1 (1.00)	0.425 (1.00)			0.567 (1.00)	0.757 (1.00)	0.701 (1.00)	1 (1.00)	1 (1.00)	0.718 (1.00)
ZNF644	3 (7%)	38	1 (1.00)	1 (1.00)			0.76 (1.00)	0.525 (1.00)	0.429 (1.00)	0.433 (1.00)	1 (1.00)	0.717 (1.00)
NFAT5	3 (7%)	38	0.397 (1.00)	0.575 (1.00)	0.607 (1.00)	0.765 (1.00)	1 (1.00)	0.754 (1.00)	1 (1.00)	0.69 (1.00)	0.331 (1.00)	1 (1.00)
WHSC1L1	3 (7%)	38	0.663 (1.00)	0.124 (1.00)			0.758 (1.00)	0.757 (1.00)	0.703 (1.00)	0.161 (1.00)	0.714 (1.00)	0.403 (1.00)
KIAA1211	3 (7%)	38	0.399 (1.00)	0.575 (1.00)			0.762 (1.00)	0.527 (1.00)	0.205 (1.00)	0.436 (1.00)	0.714 (1.00)	0.72 (1.00)
NAGPA	3 (7%)	38	0.663 (1.00)	0.288 (1.00)			1 (1.00)	1 (1.00)	0.823 (1.00)	0.692 (1.00)	0.332 (1.00)	1 (1.00)
PPIG	3 (7%)	38	0.396 (1.00)	0.125 (1.00)
SLITRK5	4 (10%)	37	0.717 (1.00)	0.808 (1.00)			0.814 (1.00)	1 (1.00)	1 (1.00)	0.576 (1.00)	1 (1.00)	1 (1.00)
MBD3	3 (7%)	38	0.398 (1.00)	0.777 (1.00)			0.176 (1.00)	0.263 (1.00)	0.095 (1.00)	1 (1.00)	0.714 (1.00)	0.717 (1.00)
FOXP2	5 (12%)	36	1 (1.00)	0.835 (1.00)	0.541 (1.00)	0.305 (1.00)	0.363 (1.00)	0.354 (1.00)	0.204 (1.00)	1 (1.00)	0.772 (1.00)	0.347 (1.00)
NAPSA	3 (7%)	38	0.398 (1.00)	0.776 (1.00)	0.811 (1.00)	0.546 (1.00)
EIF3C	3 (7%)	38	0.398 (1.00)	1 (1.00)	0.811 (1.00)	0.545 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	0.69 (1.00)	1 (1.00)	1 (1.00)
GTF2F1	3 (7%)	38	0.395 (1.00)	0.574 (1.00)	1 (1.00)	0.898 (1.00)	0.762 (1.00)	0.263 (1.00)	0.43 (1.00)	0.434 (1.00)	1 (1.00)	0.718 (1.00)
CCKAR	3 (7%)	38	0.396 (1.00)	0.773 (1.00)
MMP14	3 (7%)	38	1 (1.00)	1 (1.00)			0.179 (1.00)	0.262 (1.00)	0.0929 (1.00)	0.279 (1.00)	1 (1.00)	0.117 (1.00)
ATM	3 (7%)	38	0.109 (1.00)	0.423 (1.00)	0.0226 (1.00)	0.0442 (1.00)
CCDC28B	3 (7%)	38	0.0482 (1.00)	0.285 (1.00)	0.0236 (1.00)	0.0447 (1.00)	0.567 (1.00)	0.754 (1.00)	0.702 (1.00)	1 (1.00)	0.23 (1.00)	0.405 (1.00)
IFFO1	3 (7%)	38	0.272 (1.00)	0.284 (1.00)	0.423 (1.00)	0.647 (1.00)	1 (1.00)	0.756 (1.00)	0.825 (1.00)	0.69 (1.00)	0.332 (1.00)	0.405 (1.00)
TWISTNB	3 (7%)	38	0.395 (1.00)	0.574 (1.00)			1 (1.00)	0.753 (1.00)	1 (1.00)	0.69 (1.00)	1 (1.00)	1 (1.00)
RASGRF2	3 (7%)	38	1 (1.00)	0.426 (1.00)	1 (1.00)	0.9 (1.00)	0.569 (1.00)	0.758 (1.00)	0.705 (1.00)	1 (1.00)	1 (1.00)	0.405 (1.00)
SPAG9	3 (7%)	38	1 (1.00)	1 (1.00)			1 (1.00)	1 (1.00)	1 (1.00)	0.691 (1.00)	1 (1.00)	1 (1.00)
SMCR7	3 (7%)	38	1 (1.00)	1 (1.00)	0.424 (1.00)	0.645 (1.00)	0.567 (1.00)	0.754 (1.00)	0.506 (1.00)	1 (1.00)	0.484 (1.00)	0.408 (1.00)
PSAT1	4 (10%)	37	0.496 (1.00)	0.393 (1.00)	0.144 (1.00)	0.351 (1.00)	1 (1.00)	1 (1.00)	0.823 (1.00)	1 (1.00)
PDILT	3 (7%)	38	1 (1.00)	1 (1.00)	1 (1.00)	0.898 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	0.69 (1.00)	1 (1.00)	1 (1.00)
CCDC8	3 (7%)	38	0.398 (1.00)	0.575 (1.00)	0.811 (1.00)	0.548 (1.00)	1 (1.00)	1 (1.00)	0.306 (1.00)	0.69 (1.00)	1 (1.00)	1 (1.00)
HIST1H2BK	3 (7%)	38	1 (1.00)	1 (1.00)			0.761 (1.00)	0.526 (1.00)	0.426 (1.00)	0.28 (1.00)	0.486 (1.00)	0.716 (1.00)
METAP1	3 (7%)	38	0.394 (1.00)	1 (1.00)	0.811 (1.00)	1 (1.00)	0.758 (1.00)	0.527 (1.00)	1 (1.00)	0.436 (1.00)	1 (1.00)	0.719 (1.00)
SCRIB	3 (7%)	38	1 (1.00)	1 (1.00)			0.176 (1.00)	0.263 (1.00)	0.0945 (1.00)	0.277 (1.00)	0.485 (1.00)	0.118 (1.00)
STAU1	3 (7%)	38	1 (1.00)	1 (1.00)	0.188 (1.00)	0.704 (1.00)	0.177 (1.00)	0.263 (1.00)	0.0936 (1.00)	0.688 (1.00)	0.485 (1.00)	1 (1.00)
GOLGA6B	3 (7%)	38	0.272 (1.00)	0.288 (1.00)	0.0238 (1.00)	0.0451 (1.00)	0.568 (1.00)	0.754 (1.00)	0.7 (1.00)	1 (1.00)	0.332 (1.00)	0.404 (1.00)
IRS4	4 (10%)	37	1 (1.00)	0.661 (1.00)			0.496 (1.00)	0.632 (1.00)	0.436 (1.00)	0.731 (1.00)	0.485 (1.00)	0.116 (1.00)
PDZD2	4 (10%)	37	1 (1.00)	1 (1.00)	0.161 (1.00)	0.236 (1.00)	0.498 (1.00)	0.634 (1.00)	0.436 (1.00)	0.733 (1.00)	1 (1.00)	0.346 (1.00)
CCDC135	3 (7%)	38	0.109 (1.00)	1 (1.00)			0.568 (1.00)	1 (1.00)	1 (1.00)	0.689 (1.00)	1 (1.00)	1 (1.00)
CEP72	3 (7%)	38	1 (1.00)	1 (1.00)	0.61 (1.00)	0.765 (1.00)	1 (1.00)	0.752 (1.00)	1 (1.00)	0.692 (1.00)	1 (1.00)	0.406 (1.00)
SMARCA2	3 (7%)	38	0.396 (1.00)	0.574 (1.00)	0.735 (1.00)	0.704 (1.00)	0.0338 (1.00)	0.0249 (1.00)	0.309 (1.00)	0.0584 (1.00)	0.716 (1.00)	0.0196 (1.00)
UBXN6	3 (7%)	38	1 (1.00)	1 (1.00)			1 (1.00)	0.756 (1.00)	0.822 (1.00)	0.691 (1.00)	0.331 (1.00)	1 (1.00)
YIPF2	3 (7%)	38	0.668 (1.00)	0.286 (1.00)	0.383 (1.00)	0.502 (1.00)	0.0714 (1.00)	0.112 (1.00)	0.703 (1.00)	1 (1.00)	0.23 (1.00)	0.407 (1.00)
GNAS	7 (17%)	34	0.202 (1.00)	0.31 (1.00)	0.381 (1.00)	0.786 (1.00)	0.348 (1.00)	0.845 (1.00)	0.0739 (1.00)	0.134 (1.00)	0.109 (1.00)	0.291 (1.00)
TGFBR2	3 (7%)	38	0.396 (1.00)	0.573 (1.00)	0.261 (1.00)	1 (1.00)	0.761 (1.00)	0.525 (1.00)	0.21 (1.00)	0.69 (1.00)	1 (1.00)	1 (1.00)
PARVB	3 (7%)	38	0.666 (1.00)
PTPN21	3 (7%)	38	0.271 (1.00)	0.286 (1.00)			0.0711 (1.00)	0.111 (1.00)	0.0927 (1.00)	1 (1.00)	0.0324 (1.00)	0.405 (1.00)
TSC22D1	3 (7%)	38	0.274 (1.00)	0.288 (1.00)	0.0231 (1.00)	0.0451 (1.00)	0.565 (1.00)	0.753 (1.00)	0.704 (1.00)	1 (1.00)	0.333 (1.00)	0.405 (1.00)
ZNF184	4 (10%)	37	0.247 (1.00)	0.118 (1.00)			0.363 (1.00)	0.353 (1.00)	0.68 (1.00)	1 (1.00)	0.0488 (1.00)	0.612 (1.00)
ANK3	5 (12%)	36	0.569 (1.00)	1 (1.00)	0.424 (1.00)	0.647 (1.00)	0.64 (1.00)	0.488 (1.00)	0.759 (1.00)	0.574 (1.00)	1 (1.00)	1 (1.00)

'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0753 (Fisher's exact test), Q value = 1

Table S1. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
KRAS MUTATED	14	15	1
KRAS WILD-TYPE	7	2	2

'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S2. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
KRAS MUTATED	15	5	9
KRAS WILD-TYPE	4	3	4

'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S3. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
KRAS MUTATED	6	7	5	2	2
KRAS WILD-TYPE	2	2	2	4	0

'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S4. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
KRAS MUTATED	3	7	6	5	1
KRAS WILD-TYPE	2	2	1	3	2

'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S5. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
KRAS MUTATED	11	9	3
KRAS WILD-TYPE	5	3	3

'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
KRAS MUTATED	10	10	3
KRAS WILD-TYPE	4	5	2

'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S7. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
KRAS MUTATED	9	7	5	2
KRAS WILD-TYPE	3	4	3	1

'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S8. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
KRAS MUTATED	17	4	2
KRAS WILD-TYPE	5	4	2

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S9. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
KRAS MUTATED	11	7	4
KRAS WILD-TYPE	5	6	0

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S10. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
KRAS MUTATED	13	7	2
KRAS WILD-TYPE	5	3	3

'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00223 (Fisher's exact test), Q value = 1

Table S11. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
TP53 MUTATED	8	15	1
TP53 WILD-TYPE	13	2	2

Figure S1. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S12. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
TP53 MUTATED	13	3	7
TP53 WILD-TYPE	6	5	6

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0584 (Fisher's exact test), Q value = 1

Table S13. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
TP53 MUTATED	7	5	3	1	2
TP53 WILD-TYPE	1	4	4	5	0

'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0882 (Fisher's exact test), Q value = 1

Table S14. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
TP53 MUTATED	4	5	6	3	0
TP53 WILD-TYPE	1	4	1	5	3

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S15. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
TP53 MUTATED	8	8	3
TP53 WILD-TYPE	8	4	3

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
TP53 MUTATED	8	8	3
TP53 WILD-TYPE	6	7	2

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
TP53 MUTATED	7	6	4	2
TP53 WILD-TYPE	5	5	4	1

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S18. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
TP53 MUTATED	13	4	2
TP53 WILD-TYPE	9	4	2

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S19. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
TP53 MUTATED	9	7	3
TP53 WILD-TYPE	7	6	1

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S20. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
TP53 MUTATED	11	6	2
TP53 WILD-TYPE	7	4	3

'C19ORF55 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S21. Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
C19ORF55 MUTATED	3	4	0
C19ORF55 WILD-TYPE	18	13	3

'C19ORF55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S22. Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
C19ORF55 MUTATED	5	0	2
C19ORF55 WILD-TYPE	14	8	11

'C19ORF55 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S23. Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
C19ORF55 MUTATED	4	1	1	0	0
C19ORF55 WILD-TYPE	4	8	6	6	2

'C19ORF55 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S24. Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
C19ORF55 MUTATED	2	1	2	1	0
C19ORF55 WILD-TYPE	3	8	5	7	3

'C19ORF55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S25. Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
C19ORF55 MUTATED	2	3	1
C19ORF55 WILD-TYPE	14	9	5

'C19ORF55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S26. Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
C19ORF55 MUTATED	3	2	1
C19ORF55 WILD-TYPE	11	13	4

'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S27. Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
C19ORF55 MUTATED	3	1	1	1
C19ORF55 WILD-TYPE	9	10	7	2

'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S28. Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
C19ORF55 MUTATED	5	0	1
C19ORF55 WILD-TYPE	17	8	3

'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S29. Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
C19ORF55 MUTATED	3	2	1
C19ORF55 WILD-TYPE	13	11	3

'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S30. Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
C19ORF55 MUTATED	3	2	1
C19ORF55 WILD-TYPE	15	8	4

'B4GALT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S31. Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
B4GALT2 MUTATED	2	2	1
B4GALT2 WILD-TYPE	19	15	2

'B4GALT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S32. Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
B4GALT2 MUTATED	2	1	2
B4GALT2 WILD-TYPE	17	7	11

'B4GALT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S33. Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
B4GALT2 MUTATED	2	1	1	0	0
B4GALT2 WILD-TYPE	6	8	6	6	2

'B4GALT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S34. Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
B4GALT2 MUTATED	1	1	1	1	0
B4GALT2 WILD-TYPE	4	8	6	7	3

'B4GALT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S35. Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
B4GALT2 MUTATED	2	3	0
B4GALT2 WILD-TYPE	14	9	6

'B4GALT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S36. Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
B4GALT2 MUTATED	3	2	0
B4GALT2 WILD-TYPE	11	13	5

'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S37. Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
B4GALT2 MUTATED	3	1	1	0
B4GALT2 WILD-TYPE	9	10	7	3

'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S38. Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
B4GALT2 MUTATED	4	1	0
B4GALT2 WILD-TYPE	18	7	4

'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S39. Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
B4GALT2 MUTATED	2	2	1
B4GALT2 WILD-TYPE	14	11	3

'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S40. Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
B4GALT2 MUTATED	4	1	0
B4GALT2 WILD-TYPE	14	9	5

'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00682 (Fisher's exact test), Q value = 1

Table S41. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
CDKN2A MUTATED	0	6	1
CDKN2A WILD-TYPE	21	11	2

Figure S2. Get High-res Image Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0627 (Fisher's exact test), Q value = 1

Table S42. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
CDKN2A MUTATED	6	1	0
CDKN2A WILD-TYPE	13	7	13

'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S43. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
CDKN2A MUTATED	2	0	1	1	0
CDKN2A WILD-TYPE	6	9	6	5	2

'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S44. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
CDKN2A MUTATED	0	0	3	1	0
CDKN2A WILD-TYPE	5	9	4	7	3

'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S45. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
CDKN2A MUTATED	3	3	0
CDKN2A WILD-TYPE	13	9	6

'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S46. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
CDKN2A MUTATED	3	3	0
CDKN2A WILD-TYPE	11	12	5

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S47. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
CDKN2A MUTATED	3	3	0	0
CDKN2A WILD-TYPE	9	8	8	3

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S48. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
CDKN2A MUTATED	3	3	0
CDKN2A WILD-TYPE	19	5	4

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 1

Table S49. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
CDKN2A MUTATED	4	0	2
CDKN2A WILD-TYPE	12	13	2

Figure S3. Get High-res Image Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S50. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
CDKN2A MUTATED	3	3	0
CDKN2A WILD-TYPE	15	7	5

'NFIL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S51. Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
NFIL3 MUTATED	4	2	0
NFIL3 WILD-TYPE	17	15	3

'NFIL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S52. Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
NFIL3 MUTATED	4	0	2
NFIL3 WILD-TYPE	15	8	11

'NFIL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S53. Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
NFIL3 MUTATED	1	0	1	1	1
NFIL3 WILD-TYPE	7	9	6	5	1

'NFIL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S54. Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
NFIL3 MUTATED	0	0	2	1	1
NFIL3 WILD-TYPE	5	9	5	7	2

'NFIL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S55. Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
NFIL3 MUTATED	3	2	1
NFIL3 WILD-TYPE	13	10	5

'NFIL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S56. Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
NFIL3 MUTATED	1	4	1
NFIL3 WILD-TYPE	13	11	4

'NFIL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S57. Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
NFIL3 MUTATED	3	1	1	1
NFIL3 WILD-TYPE	9	10	7	2

'NFIL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S58. Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
NFIL3 MUTATED	6	0	0
NFIL3 WILD-TYPE	16	8	4

'NFIL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S59. Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
NFIL3 MUTATED	4	2	0
NFIL3 WILD-TYPE	12	11	4

'NFIL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S60. Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
NFIL3 MUTATED	5	1	0
NFIL3 WILD-TYPE	13	9	5

'OTOF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0771 (Fisher's exact test), Q value = 1

Table S61. Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
OTOF MUTATED	7	1	1
OTOF WILD-TYPE	14	16	2

'OTOF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S62. Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
OTOF MUTATED	3	3	3
OTOF WILD-TYPE	16	5	10

'OTOF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S63. Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
OTOF MUTATED	1	3	3	0	0
OTOF WILD-TYPE	7	6	4	6	2

'OTOF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S64. Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
OTOF MUTATED	1	3	0	3	0
OTOF WILD-TYPE	4	6	7	5	3

'OTOF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S65. Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
OTOF MUTATED	3	3	2
OTOF WILD-TYPE	13	9	4

'OTOF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S66. Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
OTOF MUTATED	3	4	1
OTOF WILD-TYPE	11	11	4

'OTOF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S67. Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
OTOF MUTATED	2	3	3	0
OTOF WILD-TYPE	10	8	5	3

'OTOF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S68. Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
OTOF MUTATED	5	2	1
OTOF WILD-TYPE	17	6	3

'OTOF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S69. Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
OTOF MUTATED	4	4	0
OTOF WILD-TYPE	12	9	4

'OTOF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S70. Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
OTOF MUTATED	4	3	1
OTOF WILD-TYPE	14	7	4

'IRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S71. Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
IRS1 MUTATED	3	3	0
IRS1 WILD-TYPE	18	14	3

'IRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S72. Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
IRS1 MUTATED	3	2	1
IRS1 WILD-TYPE	16	6	12

'IRS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S73. Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
IRS1 MUTATED	1	0	1	1	0
IRS1 WILD-TYPE	7	9	6	5	2

'IRS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S74. Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
IRS1 MUTATED	1	0	0	1	1
IRS1 WILD-TYPE	4	9	7	7	2

'IRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S75. Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
IRS1 MUTATED	1	4	1
IRS1 WILD-TYPE	15	8	5

'IRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S76. Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
IRS1 MUTATED	4	1	1
IRS1 WILD-TYPE	10	14	4

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S77. Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
IRS1 MUTATED	1	4	0	1
IRS1 WILD-TYPE	11	7	8	2

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S78. Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
IRS1 MUTATED	2	3	1
IRS1 WILD-TYPE	20	5	3

'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S79. Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
IRS1 MUTATED	2	2	2
IRS1 WILD-TYPE	14	11	2

'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S80. Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
IRS1 MUTATED	2	2	2
IRS1 WILD-TYPE	16	8	3

'GAS2L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S81. Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
GAS2L2 MUTATED	3	3	0
GAS2L2 WILD-TYPE	18	14	3

'GAS2L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S82. Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
GAS2L2 MUTATED	4	1	1
GAS2L2 WILD-TYPE	15	7	12

'GAS2L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S83. Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
GAS2L2 MUTATED	2	1	1	0	1
GAS2L2 WILD-TYPE	6	8	6	6	1

'GAS2L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S84. Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
GAS2L2 MUTATED	1	1	2	1	0
GAS2L2 WILD-TYPE	4	8	5	7	3

'GAS2L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S85. Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
GAS2L2 MUTATED	2	1	1
GAS2L2 WILD-TYPE	14	11	5

'GAS2L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S86. Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
GAS2L2 MUTATED	2	2	0
GAS2L2 WILD-TYPE	12	13	5

'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S87. Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
GAS2L2 MUTATED	1	2	1	0
GAS2L2 WILD-TYPE	11	9	7	3

'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S88. Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
GAS2L2 MUTATED	3	1	0
GAS2L2 WILD-TYPE	19	7	4

'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S89. Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
GAS2L2 MUTATED	2	2	0
GAS2L2 WILD-TYPE	14	11	4

'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S90. Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
GAS2L2 MUTATED	2	2	0
GAS2L2 WILD-TYPE	16	8	5

'RBM10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S91. Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
RBM10 MUTATED	2	3	1
RBM10 WILD-TYPE	19	14	2

'RBM10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S92. Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
RBM10 MUTATED	4	2	0
RBM10 WILD-TYPE	15	6	13

'RBM10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S93. Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
RBM10 MUTATED	1	1	3	0	1
RBM10 WILD-TYPE	7	8	4	6	1

'RBM10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S94. Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
RBM10 MUTATED	1	1	1	3	0
RBM10 WILD-TYPE	4	8	6	5	3

'RBM10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S95. Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
RBM10 MUTATED	1	3	1
RBM10 WILD-TYPE	15	9	5

'RBM10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S96. Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
RBM10 MUTATED	4	1	0
RBM10 WILD-TYPE	10	14	5

'RBM10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S97. Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
RBM10 MUTATED	1	4	0	0
RBM10 WILD-TYPE	11	7	8	3

'RBM10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S98. Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
RBM10 MUTATED	2	3	0
RBM10 WILD-TYPE	20	5	4

'RBM10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S99. Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
RBM10 MUTATED	2	2	1
RBM10 WILD-TYPE	14	11	3

'RBM10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0434 (Fisher's exact test), Q value = 1

Table S100. Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
RBM10 MUTATED	1	4	0
RBM10 WILD-TYPE	17	6	5

Figure S4. Get High-res Image Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'APP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S101. Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
APP MUTATED	5	1	0
APP WILD-TYPE	16	16	3

'APP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S102. Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
APP MUTATED	2	1	3
APP WILD-TYPE	17	7	10

'APP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S103. Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
APP MUTATED	1	2	1	1	0
APP WILD-TYPE	7	7	6	5	2

'APP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S104. Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
APP MUTATED	1	2	0	1	1
APP WILD-TYPE	4	7	7	7	2

'APP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S105. Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
APP MUTATED	3	1	1
APP WILD-TYPE	13	11	5

'APP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S106. Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
APP MUTATED	1	3	1
APP WILD-TYPE	13	12	4

'APP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S107. Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
APP MUTATED	1	1	2	1
APP WILD-TYPE	11	10	6	2

'APP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S108. Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
APP MUTATED	4	0	1
APP WILD-TYPE	18	8	3

'APP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S109. Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
APP MUTATED	3	2	0
APP WILD-TYPE	13	11	4

'APP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S110. Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
APP MUTATED	3	1	1
APP WILD-TYPE	15	9	4

'IPP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S111. Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
IPP MUTATED	4	1	0
IPP WILD-TYPE	17	16	3

'IPP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S112. Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
IPP MUTATED	2	0	3
IPP WILD-TYPE	17	8	10

'IPP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S113. Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
IPP MUTATED	2	0	2	1	0
IPP WILD-TYPE	6	9	5	5	2

'IPP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0974 (Fisher's exact test), Q value = 1

Table S114. Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
IPP MUTATED	2	0	0	2	1
IPP WILD-TYPE	3	9	7	6	2

'IPP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S115. Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
IPP MUTATED	1	2	2
IPP WILD-TYPE	15	10	4

'IPP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S116. Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
IPP MUTATED	2	1	2
IPP WILD-TYPE	12	14	3

'IPP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S117. Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
IPP MUTATED	0	2	2	1
IPP WILD-TYPE	12	9	6	2

'IPP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0793 (Fisher's exact test), Q value = 1

Table S118. Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
IPP MUTATED	3	0	2
IPP WILD-TYPE	19	8	2

'IPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S119. Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
IPP MUTATED	3	2	0
IPP WILD-TYPE	13	11	4

'IPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0777 (Fisher's exact test), Q value = 1

Table S120. Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
IPP MUTATED	1	2	2
IPP WILD-TYPE	17	8	3

'MAMLD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S121. Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
MAMLD1 MUTATED	4	3	0
MAMLD1 WILD-TYPE	17	14	3

'MAMLD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S122. Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
MAMLD1 MUTATED	4	1	2
MAMLD1 WILD-TYPE	15	7	11

'MAMLD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S123. Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
MAMLD1 MUTATED	2	1	1	1	0
MAMLD1 WILD-TYPE	6	8	6	5	2

'MAMLD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S124. Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
MAMLD1 MUTATED	1	1	1	1	1
MAMLD1 WILD-TYPE	4	8	6	7	2

'MAMLD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S125. Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
MAMLD1 MUTATED	4	3	0
MAMLD1 WILD-TYPE	12	9	6

'MAMLD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S126. Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
MAMLD1 MUTATED	4	3	0
MAMLD1 WILD-TYPE	10	12	5

'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S127. Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
MAMLD1 MUTATED	2	3	2	0
MAMLD1 WILD-TYPE	10	8	6	3

'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S128. Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
MAMLD1 MUTATED	6	1	0
MAMLD1 WILD-TYPE	16	7	4

'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S129. Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
MAMLD1 MUTATED	4	2	1
MAMLD1 WILD-TYPE	12	11	3

'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S130. Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
MAMLD1 MUTATED	4	2	1
MAMLD1 WILD-TYPE	14	8	4

'ARHGAP18 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S131. Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
ARHGAP18 MUTATED	2	2	0
ARHGAP18 WILD-TYPE	19	15	3

'ARHGAP18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S132. Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
ARHGAP18 MUTATED	2	2	0
ARHGAP18 WILD-TYPE	17	6	13

'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S133. Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
ARHGAP18 MUTATED	2	1	1
ARHGAP18 WILD-TYPE	14	11	5

'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S134. Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
ARHGAP18 MUTATED	3	1	0
ARHGAP18 WILD-TYPE	11	14	5

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S135. Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
ARHGAP18 MUTATED	2	2	0	0
ARHGAP18 WILD-TYPE	10	9	8	3

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S136. Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
ARHGAP18 MUTATED	2	2	0
ARHGAP18 WILD-TYPE	20	6	4

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S137. Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
ARHGAP18 MUTATED	2	2	0
ARHGAP18 WILD-TYPE	14	11	4

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S138. Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
ARHGAP18 MUTATED	1	2	1
ARHGAP18 WILD-TYPE	17	8	4

'PHF8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S139. Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
PHF8 MUTATED	1	3	1
PHF8 WILD-TYPE	20	14	2

'PHF8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S140. Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
PHF8 MUTATED	4	1	0
PHF8 WILD-TYPE	15	7	13

'PHF8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S141. Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
PHF8 MUTATED	2	0	1	1	0
PHF8 WILD-TYPE	6	9	6	5	2

'PHF8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S142. Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
PHF8 MUTATED	1	0	1	1	1
PHF8 WILD-TYPE	4	9	6	7	2

'PHF8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S143. Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
PHF8 MUTATED	4	0	0
PHF8 WILD-TYPE	12	12	6

'PHF8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0994 (Fisher's exact test), Q value = 1

Table S144. Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
PHF8 MUTATED	0	4	0
PHF8 WILD-TYPE	14	11	5

'PHF8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 1

Table S145. Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
PHF8 MUTATED	4	0	0	0
PHF8 WILD-TYPE	8	11	8	3

'PHF8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S146. Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
PHF8 MUTATED	4	0	0
PHF8 WILD-TYPE	18	8	4

'PHF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S147. Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
PHF8 MUTATED	3	0	0
PHF8 WILD-TYPE	13	13	4

'PHF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S148. Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
PHF8 MUTATED	3	0	0
PHF8 WILD-TYPE	15	10	5

'THBS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S149. Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
THBS4 MUTATED	4	1	1
THBS4 WILD-TYPE	17	16	2

'THBS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S150. Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
THBS4 MUTATED	3	1	2
THBS4 WILD-TYPE	16	7	11

'THBS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S151. Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
THBS4 MUTATED	2	2	2	0	0
THBS4 WILD-TYPE	6	7	5	6	2

'THBS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S152. Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
THBS4 MUTATED	1	2	1	2	0
THBS4 WILD-TYPE	4	7	6	6	3

'THBS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S153. Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
THBS4 MUTATED	3	1	2
THBS4 WILD-TYPE	13	11	4

'THBS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S154. Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
THBS4 MUTATED	2	3	1
THBS4 WILD-TYPE	12	12	4

'THBS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S155. Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
THBS4 MUTATED	2	2	1	1
THBS4 WILD-TYPE	10	9	7	2

'THBS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S156. Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
THBS4 MUTATED	4	1	1
THBS4 WILD-TYPE	18	7	3

'THBS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S157. Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
THBS4 MUTATED	4	2	0
THBS4 WILD-TYPE	12	11	4

'THBS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S158. Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
THBS4 MUTATED	3	2	1
THBS4 WILD-TYPE	15	8	4

'SMAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S159. Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
SMAD4 MUTATED	3	4	0
SMAD4 WILD-TYPE	18	13	3

'SMAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S160. Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
SMAD4 MUTATED	5	1	1
SMAD4 WILD-TYPE	14	7	12

'SMAD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S161. Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
SMAD4 MUTATED	1	1	4	1	0
SMAD4 WILD-TYPE	7	8	3	5	2

'SMAD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S162. Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
SMAD4 MUTATED	1	1	1	4	0
SMAD4 WILD-TYPE	4	8	6	4	3

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S163. Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
SMAD4 MUTATED	2	4	0
SMAD4 WILD-TYPE	14	8	6

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S164. Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
SMAD4 MUTATED	4	2	0
SMAD4 WILD-TYPE	10	13	5

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S165. Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
SMAD4 MUTATED	1	4	1	0
SMAD4 WILD-TYPE	11	7	7	3

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S166. Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
SMAD4 MUTATED	4	2	0
SMAD4 WILD-TYPE	18	6	4

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S167. Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
SMAD4 MUTATED	3	1	2
SMAD4 WILD-TYPE	13	12	2

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S168. Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
SMAD4 MUTATED	3	3	0
SMAD4 WILD-TYPE	15	7	5

'PTPRF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S169. Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
PTPRF MUTATED	3	3	1
PTPRF WILD-TYPE	18	14	2

'PTPRF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S170. Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
PTPRF MUTATED	5	1	1
PTPRF WILD-TYPE	14	7	12

'PTPRF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S171. Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
PTPRF MUTATED	1	1	2	1	0
PTPRF WILD-TYPE	7	8	5	5	2

'PTPRF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S172. Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
PTPRF MUTATED	1	1	1	2	0
PTPRF WILD-TYPE	4	8	6	6	3

'PTPRF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S173. Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
PTPRF MUTATED	2	3	2
PTPRF WILD-TYPE	14	9	4

'PTPRF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S174. Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
PTPRF MUTATED	4	2	1
PTPRF WILD-TYPE	10	13	4

'PTPRF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S175. Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
PTPRF MUTATED	2	4	0	1
PTPRF WILD-TYPE	10	7	8	2

'PTPRF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S176. Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
PTPRF MUTATED	4	2	1
PTPRF WILD-TYPE	18	6	3

'PTPRF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S177. Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
PTPRF MUTATED	4	2	1
PTPRF WILD-TYPE	12	11	3

'PTPRF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S178. Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
PTPRF MUTATED	2	4	1
PTPRF WILD-TYPE	16	6	4

'MED12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 1

Table S179. Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
MED12 MUTATED	6	0	0
MED12 WILD-TYPE	15	17	3

Figure S5. Get High-res Image Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MED12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S180. Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
MED12 MUTATED	2	0	4
MED12 WILD-TYPE	17	8	9

'MED12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S181. Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
MED12 MUTATED	0	2	1	0	1
MED12 WILD-TYPE	8	7	6	6	1

'MED12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S182. Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
MED12 MUTATED	0	2	1	1	0
MED12 WILD-TYPE	5	7	6	7	3

'MED12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S183. Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
MED12 MUTATED	3	1	2
MED12 WILD-TYPE	13	11	4

'MED12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S184. Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
MED12 MUTATED	2	2	2
MED12 WILD-TYPE	12	13	3

'MED12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S185. Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
MED12 MUTATED	2	1	1	2
MED12 WILD-TYPE	10	10	7	1

'MED12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S186. Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
MED12 MUTATED	5	0	1
MED12 WILD-TYPE	17	8	3

'MED12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S187. Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
MED12 MUTATED	3	3	0
MED12 WILD-TYPE	13	10	4

'MED12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S188. Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
MED12 MUTATED	4	1	1
MED12 WILD-TYPE	14	9	4

'BMP2K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S189. Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
BMP2K MUTATED	3	1	0
BMP2K WILD-TYPE	18	16	3

'BMP2K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S190. Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
BMP2K MUTATED	2	0	2
BMP2K WILD-TYPE	17	8	11

'BMP2K MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S191. Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
BMP2K MUTATED	0	1	2	0	1
BMP2K WILD-TYPE	8	8	5	6	1

'BMP2K MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S192. Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
BMP2K MUTATED	0	1	1	2	0
BMP2K WILD-TYPE	5	8	6	6	3

'BMP2K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S193. Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
BMP2K MUTATED	1	2	1
BMP2K WILD-TYPE	15	10	5

'BMP2K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S194. Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
BMP2K MUTATED	2	1	1
BMP2K WILD-TYPE	12	14	4

'BMP2K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S195. Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
BMP2K MUTATED	0	2	1	1
BMP2K WILD-TYPE	12	9	7	2

'BMP2K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S196. Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
BMP2K MUTATED	4	0	0
BMP2K WILD-TYPE	18	8	4

'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S197. Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
BMP2K MUTATED	2	2	0
BMP2K WILD-TYPE	14	11	4

'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S198. Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
BMP2K MUTATED	2	2	0
BMP2K WILD-TYPE	16	8	5

'ZMYM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S199. Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
ZMYM5 MUTATED	2	2	0
ZMYM5 WILD-TYPE	19	15	3

'ZMYM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S200. Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
ZMYM5 MUTATED	3	0	1
ZMYM5 WILD-TYPE	16	8	12

'ZMYM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S201. Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
ZMYM5 MUTATED	0	2	1	0	0
ZMYM5 WILD-TYPE	8	7	6	6	2

'ZMYM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S202. Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
ZMYM5 MUTATED	0	2	0	1	0
ZMYM5 WILD-TYPE	5	7	7	7	3

'ZMYM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S203. Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
ZMYM5 MUTATED	3	1	0
ZMYM5 WILD-TYPE	13	11	6

'ZMYM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S204. Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
ZMYM5 MUTATED	2	2	0
ZMYM5 WILD-TYPE	12	13	5

'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S205. Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
ZMYM5 MUTATED	2	1	1	0
ZMYM5 WILD-TYPE	10	10	7	3

'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S206. Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
ZMYM5 MUTATED	4	0	0
ZMYM5 WILD-TYPE	18	8	4

'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S207. Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
ZMYM5 MUTATED	3	1	0
ZMYM5 WILD-TYPE	13	12	4

'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S208. Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
ZMYM5 MUTATED	2	2	0
ZMYM5 WILD-TYPE	16	8	5

'SYT15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S209. Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
SYT15 MUTATED	3	0	1
SYT15 WILD-TYPE	18	17	2

'SYT15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S210. Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
SYT15 MUTATED	3	1	0
SYT15 WILD-TYPE	16	7	13

'SYT15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S211. Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
SYT15 MUTATED	0	1	2	0	0
SYT15 WILD-TYPE	8	8	5	6	2

'SYT15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S212. Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
SYT15 MUTATED	0	1	0	2	0
SYT15 WILD-TYPE	5	8	7	6	3

'SYT15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S213. Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
SYT15 MUTATED	2	2	0
SYT15 WILD-TYPE	14	10	6

'SYT15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S214. Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
SYT15 MUTATED	2	2	0
SYT15 WILD-TYPE	12	13	5

'SYT15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S215. Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
SYT15 MUTATED	2	2	0	0
SYT15 WILD-TYPE	10	9	8	3

'SYT15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S216. Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
SYT15 MUTATED	3	1	0
SYT15 WILD-TYPE	19	7	4

'SYT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S217. Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
SYT15 MUTATED	3	1	0
SYT15 WILD-TYPE	13	12	4

'SYT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S218. Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
SYT15 MUTATED	2	1	1
SYT15 WILD-TYPE	16	9	4

'PLAU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S219. Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
PLAU MUTATED	4	0	0
PLAU WILD-TYPE	17	17	3

'PLAU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S220. Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
PLAU MUTATED	1	1	2
PLAU WILD-TYPE	18	7	11

'PLAU MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S221. Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
PLAU MUTATED	1	1	1	0	0
PLAU WILD-TYPE	7	8	6	6	2

'PLAU MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S222. Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
PLAU MUTATED	1	1	0	1	0
PLAU WILD-TYPE	4	8	7	7	3

'PLAU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S223. Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
PLAU MUTATED	1	2	1
PLAU WILD-TYPE	15	10	5

'PLAU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S224. Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
PLAU MUTATED	2	1	1
PLAU WILD-TYPE	12	14	4

'PLAU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S225. Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
PLAU MUTATED	0	2	1	1
PLAU WILD-TYPE	12	9	7	2

'PLAU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S226. Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
PLAU MUTATED	2	1	1
PLAU WILD-TYPE	20	7	3

'PLAU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S227. Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
PLAU MUTATED	1	3	0
PLAU WILD-TYPE	15	10	4

'PLAU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S228. Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
PLAU MUTATED	1	1	2
PLAU WILD-TYPE	17	9	3

'MEPCE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S229. Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
MEPCE MUTATED	2	1	1
MEPCE WILD-TYPE	19	16	2

'MEPCE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S230. Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
MEPCE MUTATED	3	0	1
MEPCE WILD-TYPE	16	8	12

'MEPCE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S231. Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
MEPCE MUTATED	0	1	2	0	0
MEPCE WILD-TYPE	8	8	5	6	2

'MEPCE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S232. Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
MEPCE MUTATED	0	1	0	2	0
MEPCE WILD-TYPE	5	8	7	6	3

'MEPCE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S233. Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
MEPCE MUTATED	3	1	0
MEPCE WILD-TYPE	13	11	6

'MEPCE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S234. Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
MEPCE MUTATED	1	3	0
MEPCE WILD-TYPE	13	12	5

'MEPCE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S235. Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
MEPCE MUTATED	2	1	1	0
MEPCE WILD-TYPE	10	10	7	3

'MEPCE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S236. Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
MEPCE MUTATED	4	0	0
MEPCE WILD-TYPE	18	8	4

'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S237. Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
MEPCE MUTATED	3	0	0
MEPCE WILD-TYPE	13	13	4

'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S238. Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
MEPCE MUTATED	2	1	0
MEPCE WILD-TYPE	16	9	5

'ZMIZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S239. Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
ZMIZ1 MUTATED	4	1	0
ZMIZ1 WILD-TYPE	17	16	3

'ZMIZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S240. Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
ZMIZ1 MUTATED	2	1	2
ZMIZ1 WILD-TYPE	17	7	11

'ZMIZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S241. Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
ZMIZ1 MUTATED	1	3	1	0	0
ZMIZ1 WILD-TYPE	7	6	6	6	2

'ZMIZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S242. Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
ZMIZ1 MUTATED	1	3	0	1	0
ZMIZ1 WILD-TYPE	4	6	7	7	3

'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S243. Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
ZMIZ1 MUTATED	3	1	1
ZMIZ1 WILD-TYPE	13	11	5

'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S244. Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
ZMIZ1 MUTATED	2	3	0
ZMIZ1 WILD-TYPE	12	12	5

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S245. Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
ZMIZ1 MUTATED	1	2	2	0
ZMIZ1 WILD-TYPE	11	9	6	3

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S246. Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
ZMIZ1 MUTATED	4	1	0
ZMIZ1 WILD-TYPE	18	7	4

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S247. Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
ZMIZ1 MUTATED	3	2	0
ZMIZ1 WILD-TYPE	13	11	4

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S248. Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
ZMIZ1 MUTATED	3	2	0
ZMIZ1 WILD-TYPE	15	8	5

'SLC39A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S249. Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
SLC39A5 MUTATED	3	0	1
SLC39A5 WILD-TYPE	18	17	2

'SLC39A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S250. Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
SLC39A5 MUTATED	1	0	3
SLC39A5 WILD-TYPE	18	8	10

'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S251. Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
SLC39A5 MUTATED	2	1	1
SLC39A5 WILD-TYPE	14	11	5

'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S252. Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
SLC39A5 MUTATED	1	2	1
SLC39A5 WILD-TYPE	13	13	4

'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S253. Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
SLC39A5 MUTATED	0	1	2	1
SLC39A5 WILD-TYPE	12	10	6	2

'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S254. Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
SLC39A5 MUTATED	2	1	1
SLC39A5 WILD-TYPE	20	7	3

'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S255. Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
SLC39A5 MUTATED	1	2	1
SLC39A5 WILD-TYPE	15	11	3

'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S256. Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
SLC39A5 MUTATED	2	1	1
SLC39A5 WILD-TYPE	16	9	4

'GUCY2F MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 1

Table S257. Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
GUCY2F MUTATED	4	0	1
GUCY2F WILD-TYPE	17	17	2

'GUCY2F MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S258. Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
GUCY2F MUTATED	2	0	3
GUCY2F WILD-TYPE	17	8	10

'GUCY2F MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S259. Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
GUCY2F MUTATED	0	1	1	1	1
GUCY2F WILD-TYPE	8	8	6	5	1

'GUCY2F MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S260. Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
GUCY2F MUTATED	0	1	1	1	1
GUCY2F WILD-TYPE	5	8	6	7	2

'GUCY2F MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S261. Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
GUCY2F MUTATED	2	2	1
GUCY2F WILD-TYPE	14	10	5

'GUCY2F MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S262. Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
GUCY2F MUTATED	2	2	1
GUCY2F WILD-TYPE	12	13	4

'GUCY2F MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S263. Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
GUCY2F MUTATED	0	2	2	1
GUCY2F WILD-TYPE	12	9	6	2

'GUCY2F MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S264. Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
GUCY2F MUTATED	4	1	0
GUCY2F WILD-TYPE	18	7	4

'GUCY2F MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S265. Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
GUCY2F MUTATED	3	1	1
GUCY2F WILD-TYPE	13	12	3

'GUCY2F MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S266. Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
GUCY2F MUTATED	3	2	0
GUCY2F WILD-TYPE	15	8	5

'EDC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S267. Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
EDC4 MUTATED	2	2	1
EDC4 WILD-TYPE	19	15	2

'EDC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S268. Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
EDC4 MUTATED	4	0	1
EDC4 WILD-TYPE	15	8	12

'EDC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S269. Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
EDC4 MUTATED	2	1	1	0	0
EDC4 WILD-TYPE	6	8	6	6	2

'EDC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S270. Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
EDC4 MUTATED	0	1	2	1	0
EDC4 WILD-TYPE	5	8	5	7	3

'EDC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S271. Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
EDC4 MUTATED	2	2	0
EDC4 WILD-TYPE	14	10	6

'EDC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S272. Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
EDC4 MUTATED	2	2	0
EDC4 WILD-TYPE	12	13	5

'EDC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S273. Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
EDC4 MUTATED	1	2	1	0
EDC4 WILD-TYPE	11	9	7	3

'EDC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S274. Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
EDC4 MUTATED	3	1	0
EDC4 WILD-TYPE	19	7	4

'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S275. Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
EDC4 MUTATED	2	1	1
EDC4 WILD-TYPE	14	12	3

'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S276. Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
EDC4 MUTATED	2	2	0
EDC4 WILD-TYPE	16	8	5

'SEH1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S277. Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
SEH1L MUTATED	2	0	1
SEH1L WILD-TYPE	19	17	2

'SEH1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S278. Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
SEH1L MUTATED	1	1	1
SEH1L WILD-TYPE	18	7	12

'SEH1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0718 (Fisher's exact test), Q value = 1

Table S279. Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
SEH1L MUTATED	0	3	0
SEH1L WILD-TYPE	16	9	6

'SEH1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S280. Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
SEH1L MUTATED	2	1	0
SEH1L WILD-TYPE	12	14	5

'SEH1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S281. Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
SEH1L MUTATED	0	2	1	0
SEH1L WILD-TYPE	12	9	7	3

'SEH1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S282. Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
SEH1L MUTATED	2	1	0
SEH1L WILD-TYPE	20	7	4

'SEH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S283. Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
SEH1L MUTATED	1	2	0
SEH1L WILD-TYPE	15	11	4

'SEH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S284. Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
SEH1L MUTATED	1	2	0
SEH1L WILD-TYPE	17	8	5

'SLC4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S285. Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
SLC4A3 MUTATED	1	2	0
SLC4A3 WILD-TYPE	20	15	3

'SLC4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S286. Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
SLC4A3 MUTATED	2	1	0
SLC4A3 WILD-TYPE	17	7	13

'SLC4A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S287. Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
SLC4A3 MUTATED	1	1	1	0	0
SLC4A3 WILD-TYPE	7	8	6	6	2

'SLC4A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S288. Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
SLC4A3 MUTATED	1	1	0	1	0
SLC4A3 WILD-TYPE	4	8	7	7	3

'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S289. Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
SLC4A3 MUTATED	1	2	0
SLC4A3 WILD-TYPE	15	10	6

'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S290. Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
SLC4A3 MUTATED	3	0	0
SLC4A3 WILD-TYPE	11	15	5

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S291. Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
SLC4A3 MUTATED	1	2	0	0
SLC4A3 WILD-TYPE	11	9	8	3

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S292. Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
SLC4A3 MUTATED	2	1	0
SLC4A3 WILD-TYPE	20	7	4

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S293. Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
SLC4A3 MUTATED	2	1	0
SLC4A3 WILD-TYPE	14	12	4

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0431 (Fisher's exact test), Q value = 1

Table S294. Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
SLC4A3 MUTATED	0	3	0
SLC4A3 WILD-TYPE	18	7	5

Figure S6. Get High-res Image Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CD99L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S295. Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
CD99L2 MUTATED	2	2	0
CD99L2 WILD-TYPE	19	15	3

'CD99L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S296. Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
CD99L2 MUTATED	1	1	2
CD99L2 WILD-TYPE	18	7	11

'CD99L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S297. Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
CD99L2 MUTATED	1	2	1
CD99L2 WILD-TYPE	15	10	5

'CD99L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S298. Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
CD99L2 MUTATED	2	1	1
CD99L2 WILD-TYPE	12	14	4

'CD99L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S299. Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
CD99L2 MUTATED	0	2	1	1
CD99L2 WILD-TYPE	12	9	7	2

'CD99L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S300. Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
CD99L2 MUTATED	2	1	1
CD99L2 WILD-TYPE	20	7	3

'CD99L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S301. Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
CD99L2 MUTATED	3	1	0
CD99L2 WILD-TYPE	13	12	4

'CD99L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S302. Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
CD99L2 MUTATED	1	2	1
CD99L2 WILD-TYPE	17	8	4

'SBNO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S303. Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
SBNO1 MUTATED	1	3	0
SBNO1 WILD-TYPE	20	14	3

'SBNO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S304. Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
SBNO1 MUTATED	4	0	0
SBNO1 WILD-TYPE	15	8	13

'SBNO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S305. Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
SBNO1 MUTATED	1	2	0	1	0
SBNO1 WILD-TYPE	7	7	7	5	2

'SBNO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S306. Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
SBNO1 MUTATED	1	2	1	0	0
SBNO1 WILD-TYPE	4	7	6	8	3

'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S307. Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
SBNO1 MUTATED	3	1	0
SBNO1 WILD-TYPE	13	11	6

'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S308. Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
SBNO1 MUTATED	2	2	0
SBNO1 WILD-TYPE	12	13	5

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S309. Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
SBNO1 MUTATED	3	1	0	0
SBNO1 WILD-TYPE	9	10	8	3

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S310. Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
SBNO1 MUTATED	4	0	0
SBNO1 WILD-TYPE	18	8	4

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S311. Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
SBNO1 MUTATED	3	0	1
SBNO1 WILD-TYPE	13	13	3

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S312. Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
SBNO1 MUTATED	3	1	0
SBNO1 WILD-TYPE	15	9	5

'NPNT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S313. Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
NPNT MUTATED	3	0	0
NPNT WILD-TYPE	18	17	3

'NPNT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 1

Table S314. Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
NPNT MUTATED	0	0	3
NPNT WILD-TYPE	19	8	10

Figure S7. Get High-res Image Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NPNT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S315. Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
NPNT MUTATED	1	1	0	1	0
NPNT WILD-TYPE	7	8	7	5	2

'NPNT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S316. Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
NPNT MUTATED	1	1	0	0	1
NPNT WILD-TYPE	4	8	7	8	2

'NPNT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S317. Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
NPNT MUTATED	2	0	1
NPNT WILD-TYPE	14	12	5

'NPNT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S318. Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
NPNT MUTATED	1	1	1
NPNT WILD-TYPE	13	14	4

'NPNT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S319. Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
NPNT MUTATED	1	0	1	1
NPNT WILD-TYPE	11	11	7	2

'NPNT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S320. Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
NPNT MUTATED	2	0	1
NPNT WILD-TYPE	20	8	3

'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S321. Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
NPNT MUTATED	2	1	0
NPNT WILD-TYPE	14	12	4

'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S322. Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
NPNT MUTATED	2	0	1
NPNT WILD-TYPE	16	10	4

'TMEM175 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S323. Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
TMEM175 MUTATED	2	2	1
TMEM175 WILD-TYPE	19	15	2

'TMEM175 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S324. Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
TMEM175 MUTATED	3	1	1
TMEM175 WILD-TYPE	16	7	12

'TMEM175 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S325. Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
TMEM175 MUTATED	0	1	3	0	0
TMEM175 WILD-TYPE	8	8	4	6	2

'TMEM175 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S326. Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
TMEM175 MUTATED	0	1	0	3	0
TMEM175 WILD-TYPE	5	8	7	5	3

'TMEM175 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S327. Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
TMEM175 MUTATED	2	3	0
TMEM175 WILD-TYPE	14	9	6

'TMEM175 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S328. Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
TMEM175 MUTATED	3	2	0
TMEM175 WILD-TYPE	11	13	5

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S329. Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
TMEM175 MUTATED	1	3	1	0
TMEM175 WILD-TYPE	11	8	7	3

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S330. Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
TMEM175 MUTATED	4	1	0
TMEM175 WILD-TYPE	18	7	4

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 1

Table S331. Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
TMEM175 MUTATED	5	0	0
TMEM175 WILD-TYPE	11	13	4

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S332. Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
TMEM175 MUTATED	2	3	0
TMEM175 WILD-TYPE	16	7	5

'IRX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S333. Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
IRX4 MUTATED	3	1	0
IRX4 WILD-TYPE	18	16	3

'IRX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S334. Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
IRX4 MUTATED	1	0	3
IRX4 WILD-TYPE	18	8	10

'IRX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S335. Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
IRX4 MUTATED	2	0	2
IRX4 WILD-TYPE	14	12	4

'IRX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S336. Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
IRX4 MUTATED	1	1	2
IRX4 WILD-TYPE	13	14	3

'IRX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S337. Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
IRX4 MUTATED	2	0	1	1
IRX4 WILD-TYPE	10	11	7	2

'IRX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0931 (Fisher's exact test), Q value = 1

Table S338. Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
IRX4 MUTATED	2	0	2
IRX4 WILD-TYPE	20	8	2

'IRX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S339. Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
IRX4 MUTATED	1	2	0
IRX4 WILD-TYPE	15	11	4

'IRX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0743 (Fisher's exact test), Q value = 1

Table S340. Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
IRX4 MUTATED	1	0	2
IRX4 WILD-TYPE	17	10	3

'CLCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S341. Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
CLCC1 MUTATED	3	0	0
CLCC1 WILD-TYPE	18	17	3

'CLCC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S342. Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
CLCC1 MUTATED	0	1	2
CLCC1 WILD-TYPE	19	7	11

'CLCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S343. Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
CLCC1 MUTATED	1	1	1
CLCC1 WILD-TYPE	15	11	5

'CLCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S344. Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
CLCC1 MUTATED	1	1	1
CLCC1 WILD-TYPE	13	14	4

'CLCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S345. Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
CLCC1 MUTATED	0	1	1	1
CLCC1 WILD-TYPE	12	10	7	2

'CLCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S346. Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
CLCC1 MUTATED	1	1	1
CLCC1 WILD-TYPE	21	7	3

'CLCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S347. Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
CLCC1 MUTATED	1	2	0
CLCC1 WILD-TYPE	15	11	4

'CLCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0735 (Fisher's exact test), Q value = 1

Table S348. Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
CLCC1 MUTATED	1	0	2
CLCC1 WILD-TYPE	17	10	3

'BTNL8 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S349. Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
BTNL8 MUTATED	2	2	0
BTNL8 WILD-TYPE	19	15	3

'BTNL8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S350. Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
BTNL8 MUTATED	3	1	0
BTNL8 WILD-TYPE	16	7	13

'BTNL8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S351. Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
BTNL8 MUTATED	1	1	2	0	0
BTNL8 WILD-TYPE	7	8	5	6	2

'BTNL8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S352. Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
BTNL8 MUTATED	1	1	0	2	0
BTNL8 WILD-TYPE	4	8	7	6	3

'BTNL8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0735 (Fisher's exact test), Q value = 1

Table S353. Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
BTNL8 MUTATED	0	3	1
BTNL8 WILD-TYPE	16	9	5

'BTNL8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0494 (Fisher's exact test), Q value = 1

Table S354. Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
BTNL8 MUTATED	4	0	0
BTNL8 WILD-TYPE	10	15	5

Figure S8. Get High-res Image Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 1

Table S355. Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
BTNL8 MUTATED	0	4	0	0
BTNL8 WILD-TYPE	12	7	8	3

Figure S9. Get High-res Image Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S356. Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
BTNL8 MUTATED	2	2	0
BTNL8 WILD-TYPE	20	6	4

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S357. Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
BTNL8 MUTATED	2	1	1
BTNL8 WILD-TYPE	14	12	3

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S358. Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
BTNL8 MUTATED	1	3	0
BTNL8 WILD-TYPE	17	7	5

'SYNGAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S359. Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
SYNGAP1 MUTATED	5	0	0
SYNGAP1 WILD-TYPE	16	17	3

'SYNGAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S360. Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
SYNGAP1 MUTATED	2	1	2
SYNGAP1 WILD-TYPE	17	7	11

'SYNGAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S361. Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
SYNGAP1 MUTATED	0	2	1	0	0
SYNGAP1 WILD-TYPE	8	7	6	6	2

'SYNGAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S362. Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
SYNGAP1 MUTATED	0	2	0	1	0
SYNGAP1 WILD-TYPE	5	7	7	7	3

'SYNGAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S363. Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
SYNGAP1 MUTATED	2	3	0
SYNGAP1 WILD-TYPE	14	9	6

'SYNGAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S364. Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
SYNGAP1 MUTATED	2	3	0
SYNGAP1 WILD-TYPE	12	12	5

'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S365. Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
SYNGAP1 MUTATED	1	2	2	0
SYNGAP1 WILD-TYPE	11	9	6	3

'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S366. Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
SYNGAP1 MUTATED	4	1	0
SYNGAP1 WILD-TYPE	18	7	4

'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S367. Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
SYNGAP1 MUTATED	3	2	0
SYNGAP1 WILD-TYPE	13	11	4

'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S368. Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
SYNGAP1 MUTATED	3	1	1
SYNGAP1 WILD-TYPE	15	9	4

'F8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S369. Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
F8 MUTATED	1	3	0
F8 WILD-TYPE	20	14	3

'F8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S370. Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
F8 MUTATED	4	0	0
F8 WILD-TYPE	15	8	13

'F8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S371. Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
F8 MUTATED	1	0	2	0	0
F8 WILD-TYPE	7	9	5	6	2

'F8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S372. Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
F8 MUTATED	0	0	1	2	0
F8 WILD-TYPE	5	9	6	6	3

'F8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S373. Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
F8 MUTATED	2	2	0
F8 WILD-TYPE	14	10	6

'F8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S374. Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
F8 MUTATED	2	2	0
F8 WILD-TYPE	12	13	5

'F8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S375. Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
F8 MUTATED	2	2	0	0
F8 WILD-TYPE	10	9	8	3

'F8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S376. Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
F8 MUTATED	3	1	0
F8 WILD-TYPE	19	7	4

'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S377. Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
F8 MUTATED	3	0	1
F8 WILD-TYPE	13	13	3

'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S378. Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
F8 MUTATED	2	2	0
F8 WILD-TYPE	16	8	5

'SORBS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 1

Table S379. Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
SORBS2 MUTATED	6	0	0
SORBS2 WILD-TYPE	15	17	3

Figure S10. Get High-res Image Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SORBS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S380. Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
SORBS2 MUTATED	2	0	4
SORBS2 WILD-TYPE	17	8	9

'SORBS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S381. Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
SORBS2 MUTATED	1	3	1	0	0
SORBS2 WILD-TYPE	7	6	6	6	2

'SORBS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S382. Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
SORBS2 MUTATED	1	3	0	1	0
SORBS2 WILD-TYPE	4	6	7	7	3

'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S383. Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
SORBS2 MUTATED	3	1	1
SORBS2 WILD-TYPE	13	11	5

'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S384. Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
SORBS2 MUTATED	1	3	1
SORBS2 WILD-TYPE	13	12	4

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S385. Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
SORBS2 MUTATED	1	1	2	1
SORBS2 WILD-TYPE	11	10	6	2

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S386. Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
SORBS2 MUTATED	4	0	1
SORBS2 WILD-TYPE	18	8	3

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S387. Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
SORBS2 MUTATED	3	2	0
SORBS2 WILD-TYPE	13	11	4

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S388. Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
SORBS2 MUTATED	3	1	1
SORBS2 WILD-TYPE	15	9	4

'NR4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S389. Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
NR4A3 MUTATED	2	1	1
NR4A3 WILD-TYPE	19	16	2

'NR4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S390. Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
NR4A3 MUTATED	3	0	1
NR4A3 WILD-TYPE	16	8	12

'NR4A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S391. Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
NR4A3 MUTATED	0	1	2	0	0
NR4A3 WILD-TYPE	8	8	5	6	2

'NR4A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S392. Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
NR4A3 MUTATED	0	1	0	2	0
NR4A3 WILD-TYPE	5	8	7	6	3

'NR4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S393. Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
NR4A3 MUTATED	3	1	0
NR4A3 WILD-TYPE	13	11	6

'NR4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S394. Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
NR4A3 MUTATED	1	3	0
NR4A3 WILD-TYPE	13	12	5

'NR4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S395. Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
NR4A3 MUTATED	2	1	1	0
NR4A3 WILD-TYPE	10	10	7	3

'NR4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S396. Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
NR4A3 MUTATED	4	0	0
NR4A3 WILD-TYPE	18	8	4

'NR4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S397. Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
NR4A3 MUTATED	3	1	0
NR4A3 WILD-TYPE	13	12	4

'NR4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S398. Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
NR4A3 MUTATED	3	1	0
NR4A3 WILD-TYPE	15	9	5

'ZNF337 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S399. Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
ZNF337 MUTATED	1	3	0
ZNF337 WILD-TYPE	20	14	3

'ZNF337 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S400. Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
ZNF337 MUTATED	3	1	0
ZNF337 WILD-TYPE	16	7	13

'ZNF337 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S401. Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
ZNF337 MUTATED	1	1	2	0	0
ZNF337 WILD-TYPE	7	8	5	6	2

'ZNF337 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S402. Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
ZNF337 MUTATED	1	1	0	2	0
ZNF337 WILD-TYPE	4	8	7	6	3

'ZNF337 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S403. Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
ZNF337 MUTATED	1	3	0
ZNF337 WILD-TYPE	15	9	6

'ZNF337 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0471 (Fisher's exact test), Q value = 1

Table S404. Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
ZNF337 MUTATED	4	0	0
ZNF337 WILD-TYPE	10	15	5

Figure S11. Get High-res Image Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF337 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S405. Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
ZNF337 MUTATED	1	3	0	0
ZNF337 WILD-TYPE	11	8	8	3

'ZNF337 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S406. Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
ZNF337 MUTATED	2	2	0
ZNF337 WILD-TYPE	20	6	4

'ZNF337 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S407. Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
ZNF337 MUTATED	2	1	1
ZNF337 WILD-TYPE	14	12	3

'ZNF337 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 1

Table S408. Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
ZNF337 MUTATED	0	4	0
ZNF337 WILD-TYPE	18	6	5

Figure S12. Get High-res Image Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TAOK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S409. Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
TAOK2 MUTATED	4	0	0
TAOK2 WILD-TYPE	17	17	3

'TAOK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S410. Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
TAOK2 MUTATED	1	0	3
TAOK2 WILD-TYPE	18	8	10

'TAOK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S411. Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
TAOK2 MUTATED	1	0	1	0	1
TAOK2 WILD-TYPE	7	9	6	6	1

'TAOK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S412. Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
TAOK2 MUTATED	1	0	1	1	0
TAOK2 WILD-TYPE	4	9	6	7	3

'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0053 (Fisher's exact test), Q value = 1

Table S413. Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
TAOK2 MUTATED	0	1	3
TAOK2 WILD-TYPE	16	11	3

Figure S13. Get High-res Image Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00295 (Fisher's exact test), Q value = 1

Table S414. Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
TAOK2 MUTATED	1	0	3
TAOK2 WILD-TYPE	13	15	2

Figure S14. Get High-res Image Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 1

Table S415. Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
TAOK2 MUTATED	0	1	1	2
TAOK2 WILD-TYPE	12	10	7	1

Figure S15. Get High-res Image Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.092 (Fisher's exact test), Q value = 1

Table S416. Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
TAOK2 MUTATED	2	0	2
TAOK2 WILD-TYPE	20	8	2

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S417. Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
TAOK2 MUTATED	1	3	0
TAOK2 WILD-TYPE	15	10	4

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S418. Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
TAOK2 MUTATED	1	1	2
TAOK2 WILD-TYPE	17	9	3

'UNC5A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S419. Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
UNC5A MUTATED	3	1	0
UNC5A WILD-TYPE	18	16	3

'UNC5A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S420. Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
UNC5A MUTATED	2	0	2
UNC5A WILD-TYPE	17	8	11

'UNC5A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S421. Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
UNC5A MUTATED	1	1	1	0	1
UNC5A WILD-TYPE	7	8	6	6	1

'UNC5A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S422. Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
UNC5A MUTATED	1	1	1	1	0
UNC5A WILD-TYPE	4	8	6	7	3

'UNC5A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S423. Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
UNC5A MUTATED	1	1	1
UNC5A WILD-TYPE	15	11	5

'UNC5A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S424. Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
UNC5A MUTATED	2	0	1
UNC5A WILD-TYPE	12	15	4

'UNC5A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S425. Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
UNC5A MUTATED	1	1	0	1
UNC5A WILD-TYPE	11	10	8	2

'UNC5A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S426. Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
UNC5A MUTATED	2	0	1
UNC5A WILD-TYPE	20	8	3

'UNC5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S427. Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
UNC5A MUTATED	2	1	0
UNC5A WILD-TYPE	14	12	4

'UNC5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S428. Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
UNC5A MUTATED	1	1	1
UNC5A WILD-TYPE	17	9	4

'TNFSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S429. Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
TNFSF9 MUTATED	3	1	0
TNFSF9 WILD-TYPE	18	16	3

'TNFSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S430. Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
TNFSF9 MUTATED	2	1	1
TNFSF9 WILD-TYPE	17	7	12

'TNFSF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S431. Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
TNFSF9 MUTATED	1	1	1	0	0
TNFSF9 WILD-TYPE	7	8	6	6	2

'TNFSF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S432. Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
TNFSF9 MUTATED	1	1	0	1	0
TNFSF9 WILD-TYPE	4	8	7	7	3

'TNFSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S433. Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
TNFSF9 MUTATED	2	2	0
TNFSF9 WILD-TYPE	14	10	6

'TNFSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S434. Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
TNFSF9 MUTATED	2	2	0
TNFSF9 WILD-TYPE	12	13	5

'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S435. Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
TNFSF9 MUTATED	1	2	1	0
TNFSF9 WILD-TYPE	11	9	7	3

'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S436. Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
TNFSF9 MUTATED	3	1	0
TNFSF9 WILD-TYPE	19	7	4

'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S437. Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
TNFSF9 MUTATED	2	2	0
TNFSF9 WILD-TYPE	14	11	4

'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S438. Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
TNFSF9 MUTATED	2	1	1
TNFSF9 WILD-TYPE	16	9	4

'TEX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S439. Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
TEX2 MUTATED	4	0	0
TEX2 WILD-TYPE	17	17	3

'TEX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S440. Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
TEX2 MUTATED	1	1	2
TEX2 WILD-TYPE	18	7	11

'TEX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S441. Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
TEX2 MUTATED	0	2	1	0	0
TEX2 WILD-TYPE	8	7	6	6	2

'TEX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S442. Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
TEX2 MUTATED	0	2	0	1	0
TEX2 WILD-TYPE	5	7	7	7	3

'TEX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S443. Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
TEX2 MUTATED	1	1	2
TEX2 WILD-TYPE	15	11	4

'TEX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S444. Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
TEX2 MUTATED	3	0	1
TEX2 WILD-TYPE	11	15	4

'TEX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S445. Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
TEX2 MUTATED	1	2	0	1
TEX2 WILD-TYPE	11	9	8	2

'TEX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S446. Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
TEX2 MUTATED	2	1	1
TEX2 WILD-TYPE	20	7	3

'TEX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S447. Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
TEX2 MUTATED	2	2	0
TEX2 WILD-TYPE	14	11	4

'TEX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S448. Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
TEX2 MUTATED	1	2	1
TEX2 WILD-TYPE	17	8	4

'RBM43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S449. Gene #47: 'RBM43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
RBM43 MUTATED	1	2	0
RBM43 WILD-TYPE	20	15	3

'RBM43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S450. Gene #47: 'RBM43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
RBM43 MUTATED	2	1	0
RBM43 WILD-TYPE	17	7	13

'CIR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S451. Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
CIR1 MUTATED	2	0	1
CIR1 WILD-TYPE	19	17	2

'CIR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S452. Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
CIR1 MUTATED	2	0	1
CIR1 WILD-TYPE	17	8	12

'CIR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 1

Table S453. Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
CIR1 MUTATED	0	3	0
CIR1 WILD-TYPE	16	9	6

'CIR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S454. Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
CIR1 MUTATED	2	1	0
CIR1 WILD-TYPE	12	14	5

'CIR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S455. Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
CIR1 MUTATED	0	2	1	0
CIR1 WILD-TYPE	12	9	7	3

'CIR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S456. Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
CIR1 MUTATED	2	1	0
CIR1 WILD-TYPE	20	7	4

'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S457. Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
CIR1 MUTATED	1	1	1
CIR1 WILD-TYPE	15	12	3

'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S458. Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
CIR1 MUTATED	1	2	0
CIR1 WILD-TYPE	17	8	5

'TOX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S459. Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
TOX4 MUTATED	2	1	1
TOX4 WILD-TYPE	19	16	2

'TOX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S460. Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
TOX4 MUTATED	3	0	1
TOX4 WILD-TYPE	16	8	12

'TOX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S461. Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
TOX4 MUTATED	1	0	1	1	0
TOX4 WILD-TYPE	7	9	6	5	2

'TOX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S462. Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
TOX4 MUTATED	1	0	1	1	0
TOX4 WILD-TYPE	4	9	6	7	3

'TOX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S463. Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
TOX4 MUTATED	1	2	1
TOX4 WILD-TYPE	15	10	5

'TOX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S464. Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
TOX4 MUTATED	2	1	1
TOX4 WILD-TYPE	12	14	4

'TOX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S465. Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
TOX4 MUTATED	1	2	0	1
TOX4 WILD-TYPE	11	9	8	2

'TOX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S466. Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
TOX4 MUTATED	2	1	1
TOX4 WILD-TYPE	20	7	3

'TOX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S467. Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
TOX4 MUTATED	2	1	1
TOX4 WILD-TYPE	14	12	3

'TOX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S468. Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
TOX4 MUTATED	1	2	1
TOX4 WILD-TYPE	17	8	4

'HIBCH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S469. Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
HIBCH MUTATED	2	0	1
HIBCH WILD-TYPE	19	17	2

'HIBCH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S470. Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
HIBCH MUTATED	0	1	2
HIBCH WILD-TYPE	19	7	11

'HIBCH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S471. Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
HIBCH MUTATED	0	1	0	2	0
HIBCH WILD-TYPE	8	8	7	4	2

'HIBCH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S472. Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
HIBCH MUTATED	0	1	1	1	0
HIBCH WILD-TYPE	5	8	6	7	3

'HIBCH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S473. Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
HIBCH MUTATED	1	1	1
HIBCH WILD-TYPE	15	11	5

'HIBCH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S474. Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
HIBCH MUTATED	1	1	1
HIBCH WILD-TYPE	13	14	4

'HIBCH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S475. Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
HIBCH MUTATED	0	1	2	0
HIBCH WILD-TYPE	12	10	6	3

'HIBCH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S476. Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
HIBCH MUTATED	1	1	1
HIBCH WILD-TYPE	21	7	3

'HIBCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0861 (Fisher's exact test), Q value = 1

Table S477. Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
HIBCH MUTATED	0	3	0
HIBCH WILD-TYPE	16	10	4

'HIBCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S478. Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
HIBCH MUTATED	1	1	1
HIBCH WILD-TYPE	17	9	4

'CRAT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S479. Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
CRAT MUTATED	3	0	0
CRAT WILD-TYPE	18	17	3

'CRAT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S480. Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
CRAT MUTATED	0	1	2
CRAT WILD-TYPE	19	7	11

'CRAT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00352 (Fisher's exact test), Q value = 1

Table S481. Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
CRAT MUTATED	0	0	3
CRAT WILD-TYPE	16	12	3

Figure S16. Get High-res Image Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CRAT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0248 (Fisher's exact test), Q value = 1

Table S482. Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
CRAT MUTATED	1	0	2
CRAT WILD-TYPE	13	15	3

Figure S17. Get High-res Image Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CRAT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00999 (Fisher's exact test), Q value = 1

Table S483. Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
CRAT MUTATED	0	1	0	2
CRAT WILD-TYPE	12	10	8	1

Figure S18. Get High-res Image Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CRAT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S484. Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
CRAT MUTATED	1	1	1
CRAT WILD-TYPE	21	7	3

'CRAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0871 (Fisher's exact test), Q value = 1

Table S485. Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
CRAT MUTATED	0	3	0
CRAT WILD-TYPE	16	10	4

'CRAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S486. Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
CRAT MUTATED	1	1	1
CRAT WILD-TYPE	17	9	4

'SRP14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S487. Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
SRP14 MUTATED	2	0	1
SRP14 WILD-TYPE	19	17	2

'SRP14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S488. Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
SRP14 MUTATED	1	0	2
SRP14 WILD-TYPE	18	8	11

'SRP14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S489. Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
SRP14 MUTATED	1	2	0
SRP14 WILD-TYPE	15	10	6

'SRP14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S490. Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
SRP14 MUTATED	1	2	0
SRP14 WILD-TYPE	13	13	5

'SRP14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S491. Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
SRP14 MUTATED	0	1	2	0
SRP14 WILD-TYPE	12	10	6	3

'SRP14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S492. Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
SRP14 MUTATED	2	1	0
SRP14 WILD-TYPE	20	7	4

'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S493. Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
SRP14 MUTATED	0	2	1
SRP14 WILD-TYPE	16	11	3

'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S494. Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
SRP14 MUTATED	2	1	0
SRP14 WILD-TYPE	16	9	5

'PDZD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S495. Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
PDZD7 MUTATED	3	1	0
PDZD7 WILD-TYPE	18	16	3

'PDZD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S496. Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
PDZD7 MUTATED	2	1	1
PDZD7 WILD-TYPE	17	7	12

'PDZD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S497. Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
PDZD7 MUTATED	0	1	1	1	0
PDZD7 WILD-TYPE	8	8	6	5	2

'PDZD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S498. Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
PDZD7 MUTATED	0	1	0	1	1
PDZD7 WILD-TYPE	5	8	7	7	2

'PDZD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S499. Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
PDZD7 MUTATED	2	1	1
PDZD7 WILD-TYPE	14	11	5

'PDZD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S500. Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
PDZD7 MUTATED	2	2	0
PDZD7 WILD-TYPE	12	13	5

'PDZD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S501. Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
PDZD7 MUTATED	1	2	1	0
PDZD7 WILD-TYPE	11	9	7	3

'PDZD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S502. Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
PDZD7 MUTATED	3	1	0
PDZD7 WILD-TYPE	19	7	4

'PDZD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S503. Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
PDZD7 MUTATED	2	1	0
PDZD7 WILD-TYPE	14	12	4

'PDZD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S504. Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
PDZD7 MUTATED	1	2	0
PDZD7 WILD-TYPE	17	8	5

'POP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S505. Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
POP5 MUTATED	1	1	1
POP5 WILD-TYPE	20	16	2

'POP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S506. Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
POP5 MUTATED	2	1	0
POP5 WILD-TYPE	17	7	13

'POP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S507. Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
POP5 MUTATED	1	1	1	0	0
POP5 WILD-TYPE	7	8	6	6	2

'POP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S508. Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
POP5 MUTATED	1	1	0	1	0
POP5 WILD-TYPE	4	8	7	7	3

'POP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S509. Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
POP5 MUTATED	1	1	1
POP5 WILD-TYPE	15	11	5

'POP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S510. Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
POP5 MUTATED	2	1	0
POP5 WILD-TYPE	12	14	5

'POP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S511. Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
POP5 MUTATED	1	2	0	0
POP5 WILD-TYPE	11	9	8	3

'POP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S512. Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
POP5 MUTATED	2	1	0
POP5 WILD-TYPE	20	7	4

'POP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S513. Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
POP5 MUTATED	1	1	1
POP5 WILD-TYPE	15	12	3

'POP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S514. Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
POP5 MUTATED	2	1	0
POP5 WILD-TYPE	16	9	5

'UNC5D MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S515. Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
UNC5D MUTATED	2	1	0
UNC5D WILD-TYPE	19	16	3

'UNC5D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S516. Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
UNC5D MUTATED	2	1	0
UNC5D WILD-TYPE	17	7	13

'UNC5D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S517. Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
UNC5D MUTATED	1	1	1	0	0
UNC5D WILD-TYPE	7	8	6	6	2

'UNC5D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S518. Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
UNC5D MUTATED	1	1	0	1	0
UNC5D WILD-TYPE	4	8	7	7	3

'UNC5D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S519. Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
UNC5D MUTATED	1	1	1
UNC5D WILD-TYPE	15	11	5

'UNC5D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S520. Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
UNC5D MUTATED	2	1	0
UNC5D WILD-TYPE	12	14	5

'UNC5D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S521. Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
UNC5D MUTATED	1	2	0	0
UNC5D WILD-TYPE	11	9	8	3

'UNC5D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S522. Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
UNC5D MUTATED	2	1	0
UNC5D WILD-TYPE	20	7	4

'UNC5D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S523. Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
UNC5D MUTATED	2	1	0
UNC5D WILD-TYPE	14	12	4

'UNC5D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S524. Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
UNC5D MUTATED	1	2	0
UNC5D WILD-TYPE	17	8	5

'FAM47C MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S525. Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
FAM47C MUTATED	3	2	0
FAM47C WILD-TYPE	18	15	3

'FAM47C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S526. Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
FAM47C MUTATED	2	1	2
FAM47C WILD-TYPE	17	7	11

'FAM47C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S527. Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
FAM47C MUTATED	2	1	1	1	0
FAM47C WILD-TYPE	6	8	6	5	2

'FAM47C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S528. Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
FAM47C MUTATED	2	1	0	1	1
FAM47C WILD-TYPE	3	8	7	7	2

'FAM47C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S529. Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
FAM47C MUTATED	2	1	2
FAM47C WILD-TYPE	14	11	4

'FAM47C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S530. Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
FAM47C MUTATED	2	2	1
FAM47C WILD-TYPE	12	13	4

'FAM47C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S531. Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
FAM47C MUTATED	1	2	1	1
FAM47C WILD-TYPE	11	9	7	2

'FAM47C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S532. Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
FAM47C MUTATED	2	2	1
FAM47C WILD-TYPE	20	6	3

'FAM47C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S533. Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
FAM47C MUTATED	3	2	0
FAM47C WILD-TYPE	13	11	4

'FAM47C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S534. Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
FAM47C MUTATED	2	2	1
FAM47C WILD-TYPE	16	8	4

'TMEM184A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S535. Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
TMEM184A MUTATED	3	1	0
TMEM184A WILD-TYPE	18	16	3

'TMEM184A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S536. Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
TMEM184A MUTATED	1	1	2
TMEM184A WILD-TYPE	18	7	11

'TMEM184A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S537. Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
TMEM184A MUTATED	2	0	1	0	0
TMEM184A WILD-TYPE	6	9	6	6	2

'TMEM184A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0884 (Fisher's exact test), Q value = 1

Table S538. Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
TMEM184A MUTATED	2	0	0	1	0
TMEM184A WILD-TYPE	3	9	7	7	3

'TMEM184A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0447 (Fisher's exact test), Q value = 1

Table S539. Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
TMEM184A MUTATED	0	2	2
TMEM184A WILD-TYPE	16	10	4

Figure S19. Get High-res Image Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TMEM184A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 1

Table S540. Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
TMEM184A MUTATED	2	0	2
TMEM184A WILD-TYPE	12	15	3

Figure S20. Get High-res Image Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TMEM184A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S541. Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
TMEM184A MUTATED	0	2	1	1
TMEM184A WILD-TYPE	12	9	7	2

'TMEM184A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 1

Table S542. Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
TMEM184A MUTATED	1	1	2
TMEM184A WILD-TYPE	21	7	2

Figure S21. Get High-res Image Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TMEM184A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S543. Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
TMEM184A MUTATED	2	2	0
TMEM184A WILD-TYPE	14	11	4

'TMEM184A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0228 (Fisher's exact test), Q value = 1

Table S544. Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
TMEM184A MUTATED	0	2	2
TMEM184A WILD-TYPE	18	8	3

Figure S22. Get High-res Image Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BEGAIN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S545. Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
BEGAIN MUTATED	4	0	0
BEGAIN WILD-TYPE	17	17	3

'BEGAIN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S546. Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
BEGAIN MUTATED	1	0	3
BEGAIN WILD-TYPE	18	8	10

'BEGAIN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S547. Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
BEGAIN MUTATED	2	1	1
BEGAIN WILD-TYPE	14	11	5

'BEGAIN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S548. Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
BEGAIN MUTATED	1	2	1
BEGAIN WILD-TYPE	13	13	4

'BEGAIN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S549. Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
BEGAIN MUTATED	0	1	2	1
BEGAIN WILD-TYPE	12	10	6	2

'BEGAIN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S550. Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
BEGAIN MUTATED	3	0	1
BEGAIN WILD-TYPE	19	8	3

'BEGAIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S551. Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
BEGAIN MUTATED	1	3	0
BEGAIN WILD-TYPE	15	10	4

'BEGAIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S552. Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
BEGAIN MUTATED	2	1	1
BEGAIN WILD-TYPE	16	9	4

'PASD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S553. Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
PASD1 MUTATED	3	1	1
PASD1 WILD-TYPE	18	16	2

'PASD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S554. Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
PASD1 MUTATED	2	2	1
PASD1 WILD-TYPE	17	6	12

'PASD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S555. Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
PASD1 MUTATED	1	0	1	2	0
PASD1 WILD-TYPE	7	9	6	4	2

'PASD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S556. Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
PASD1 MUTATED	0	0	1	2	1
PASD1 WILD-TYPE	5	9	6	6	2

'PASD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S557. Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
PASD1 MUTATED	2	3	0
PASD1 WILD-TYPE	14	9	6

'PASD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S558. Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
PASD1 MUTATED	3	2	0
PASD1 WILD-TYPE	11	13	5

'PASD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S559. Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
PASD1 MUTATED	1	3	1	0
PASD1 WILD-TYPE	11	8	7	3

'PASD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S560. Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
PASD1 MUTATED	3	2	0
PASD1 WILD-TYPE	19	6	4

'PASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S561. Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
PASD1 MUTATED	3	2	0
PASD1 WILD-TYPE	13	11	4

'PASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S562. Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
PASD1 MUTATED	2	2	1
PASD1 WILD-TYPE	16	8	4

'RBM45 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S563. Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
RBM45 MUTATED	4	0	0
RBM45 WILD-TYPE	17	17	3

'RBM45 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S564. Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
RBM45 MUTATED	2	1	1
RBM45 WILD-TYPE	17	7	12

'RBM45 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S565. Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
RBM45 MUTATED	1	0	1	1	0
RBM45 WILD-TYPE	7	9	6	5	2

'RBM45 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S566. Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
RBM45 MUTATED	1	0	0	1	1
RBM45 WILD-TYPE	4	9	7	7	2

'RBM45 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S567. Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
RBM45 MUTATED	1	2	1
RBM45 WILD-TYPE	15	10	5

'RBM45 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S568. Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
RBM45 MUTATED	2	1	1
RBM45 WILD-TYPE	12	14	4

'RBM45 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S569. Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
RBM45 MUTATED	1	2	1	0
RBM45 WILD-TYPE	11	9	7	3

'RBM45 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S570. Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
RBM45 MUTATED	2	1	1
RBM45 WILD-TYPE	20	7	3

'RBM45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S571. Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
RBM45 MUTATED	2	2	0
RBM45 WILD-TYPE	14	11	4

'RBM45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S572. Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
RBM45 MUTATED	1	1	2
RBM45 WILD-TYPE	17	9	3

'POM121 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S573. Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
POM121 MUTATED	3	1	0
POM121 WILD-TYPE	18	16	3

'POM121 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S574. Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
POM121 MUTATED	2	0	2
POM121 WILD-TYPE	17	8	11

'POM121 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S575. Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
POM121 MUTATED	1	1	1	1	0
POM121 WILD-TYPE	7	8	6	5	2

'POM121 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S576. Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
POM121 MUTATED	1	1	0	1	1
POM121 WILD-TYPE	4	8	7	7	2

'POM121 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S577. Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
POM121 MUTATED	2	1	1
POM121 WILD-TYPE	14	11	5

'POM121 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S578. Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
POM121 MUTATED	2	1	1
POM121 WILD-TYPE	12	14	4

'POM121 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S579. Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
POM121 MUTATED	1	1	1	1
POM121 WILD-TYPE	11	10	7	2

'POM121 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S580. Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
POM121 MUTATED	3	0	1
POM121 WILD-TYPE	19	8	3

'POM121 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S581. Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
POM121 MUTATED	3	1	0
POM121 WILD-TYPE	13	12	4

'POM121 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S582. Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
POM121 MUTATED	1	2	1
POM121 WILD-TYPE	17	8	4

'EME2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S583. Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
EME2 MUTATED	3	0	0
EME2 WILD-TYPE	18	17	3

'EME2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S584. Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
EME2 MUTATED	1	0	2
EME2 WILD-TYPE	18	8	11

'EME2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S585. Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
EME2 MUTATED	0	1	1	0	1
EME2 WILD-TYPE	8	8	6	6	1

'EME2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S586. Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
EME2 MUTATED	0	1	1	1	0
EME2 WILD-TYPE	5	8	6	7	3

'EME2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S587. Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
EME2 MUTATED	1	1	1
EME2 WILD-TYPE	15	11	5

'EME2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S588. Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
EME2 MUTATED	1	1	1
EME2 WILD-TYPE	13	14	4

'EME2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S589. Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
EME2 MUTATED	0	1	1	1
EME2 WILD-TYPE	12	10	7	2

'EME2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S590. Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
EME2 MUTATED	3	0	0
EME2 WILD-TYPE	19	8	4

'EME2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S591. Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
EME2 MUTATED	2	1	0
EME2 WILD-TYPE	14	12	4

'EME2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S592. Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
EME2 MUTATED	2	1	0
EME2 WILD-TYPE	16	9	5

'CUL4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S593. Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
CUL4B MUTATED	3	0	0
CUL4B WILD-TYPE	18	17	3

'CUL4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S594. Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
CUL4B MUTATED	1	1	1
CUL4B WILD-TYPE	18	7	12

'CUL4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 1

Table S595. Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
CUL4B MUTATED	0	1	2
CUL4B WILD-TYPE	16	11	4

Figure S23. Get High-res Image Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CUL4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S596. Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
CUL4B MUTATED	2	0	1
CUL4B WILD-TYPE	12	15	4

'CUL4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0936 (Fisher's exact test), Q value = 1

Table S597. Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
CUL4B MUTATED	0	2	0	1
CUL4B WILD-TYPE	12	9	8	2

'CUL4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S598. Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
CUL4B MUTATED	1	1	1
CUL4B WILD-TYPE	21	7	3

'CUL4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S599. Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
CUL4B MUTATED	1	2	0
CUL4B WILD-TYPE	15	11	4

'CUL4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S600. Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
CUL4B MUTATED	0	2	1
CUL4B WILD-TYPE	18	8	4

'DIAPH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S601. Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
DIAPH3 MUTATED	2	2	0
DIAPH3 WILD-TYPE	19	15	3

'DIAPH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S602. Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
DIAPH3 MUTATED	3	0	1
DIAPH3 WILD-TYPE	16	8	12

'DIAPH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S603. Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
DIAPH3 MUTATED	2	1	1
DIAPH3 WILD-TYPE	14	11	5

'DIAPH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S604. Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
DIAPH3 MUTATED	1	2	1
DIAPH3 WILD-TYPE	13	13	4

'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S605. Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
DIAPH3 MUTATED	2	1	0	1
DIAPH3 WILD-TYPE	10	10	8	2

'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S606. Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
DIAPH3 MUTATED	4	0	0
DIAPH3 WILD-TYPE	18	8	4

'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S607. Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
DIAPH3 MUTATED	2	1	0
DIAPH3 WILD-TYPE	14	12	4

'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S608. Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
DIAPH3 MUTATED	2	1	0
DIAPH3 WILD-TYPE	16	9	5

'IFT46 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S609. Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
IFT46 MUTATED	4	0	0
IFT46 WILD-TYPE	17	17	3

'IFT46 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S610. Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
IFT46 MUTATED	2	1	1
IFT46 WILD-TYPE	17	7	12

'IFT46 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 1

Table S611. Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
IFT46 MUTATED	0	0	2	1	1
IFT46 WILD-TYPE	8	9	5	5	1

'IFT46 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S612. Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
IFT46 MUTATED	0	0	1	2	1
IFT46 WILD-TYPE	5	9	6	6	2

'IFT46 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S613. Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
IFT46 MUTATED	1	1	1
IFT46 WILD-TYPE	15	11	5

'IFT46 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S614. Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
IFT46 MUTATED	1	1	1
IFT46 WILD-TYPE	13	14	4

'IFT46 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S615. Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
IFT46 MUTATED	1	1	0	1
IFT46 WILD-TYPE	11	10	8	2

'IFT46 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S616. Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
IFT46 MUTATED	3	0	0
IFT46 WILD-TYPE	19	8	4

'IFT46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S617. Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
IFT46 MUTATED	2	1	0
IFT46 WILD-TYPE	14	12	4

'IFT46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S618. Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
IFT46 MUTATED	2	1	0
IFT46 WILD-TYPE	16	9	5

'OTUD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S619. Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
OTUD4 MUTATED	3	1	1
OTUD4 WILD-TYPE	18	16	2

'OTUD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S620. Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
OTUD4 MUTATED	3	0	2
OTUD4 WILD-TYPE	16	8	11

'OTUD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S621. Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
OTUD4 MUTATED	1	1	2	1	0
OTUD4 WILD-TYPE	7	8	5	5	2

'OTUD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S622. Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
OTUD4 MUTATED	1	1	0	2	1
OTUD4 WILD-TYPE	4	8	7	6	2

'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S623. Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
OTUD4 MUTATED	3	2	0
OTUD4 WILD-TYPE	13	10	6

'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S624. Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
OTUD4 MUTATED	2	3	0
OTUD4 WILD-TYPE	12	12	5

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S625. Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
OTUD4 MUTATED	1	2	2	0
OTUD4 WILD-TYPE	11	9	6	3

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S626. Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
OTUD4 MUTATED	5	0	0
OTUD4 WILD-TYPE	17	8	4

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S627. Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
OTUD4 MUTATED	3	1	1
OTUD4 WILD-TYPE	13	12	3

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S628. Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
OTUD4 MUTATED	4	1	0
OTUD4 WILD-TYPE	14	9	5

'GABBR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S629. Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
GABBR1 MUTATED	3	0	1
GABBR1 WILD-TYPE	18	17	2

'GABBR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S630. Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
GABBR1 MUTATED	3	1	0
GABBR1 WILD-TYPE	16	7	13

'GABBR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S631. Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
GABBR1 MUTATED	0	1	2	1	0
GABBR1 WILD-TYPE	8	8	5	5	2

'GABBR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S632. Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
GABBR1 MUTATED	0	1	0	2	1
GABBR1 WILD-TYPE	5	8	7	6	2

'GABBR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S633. Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
GABBR1 MUTATED	2	1	1
GABBR1 WILD-TYPE	14	11	5

'GABBR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S634. Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
GABBR1 MUTATED	2	2	0
GABBR1 WILD-TYPE	12	13	5

'GABBR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S635. Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
GABBR1 MUTATED	2	2	0	0
GABBR1 WILD-TYPE	10	9	8	3

'GABBR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S636. Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
GABBR1 MUTATED	3	1	0
GABBR1 WILD-TYPE	19	7	4

'GABBR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S637. Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
GABBR1 MUTATED	3	1	0
GABBR1 WILD-TYPE	13	12	4

'GABBR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S638. Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
GABBR1 MUTATED	2	2	0
GABBR1 WILD-TYPE	16	8	5

'MYH10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S639. Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
MYH10 MUTATED	4	0	0
MYH10 WILD-TYPE	17	17	3

'MYH10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S640. Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
MYH10 MUTATED	1	1	2
MYH10 WILD-TYPE	18	7	11

'MYH10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S641. Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
MYH10 MUTATED	0	1	1	1	0
MYH10 WILD-TYPE	8	8	6	5	2

'MYH10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S642. Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
MYH10 MUTATED	0	1	1	1	0
MYH10 WILD-TYPE	5	8	6	7	3

'MYH10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S643. Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
MYH10 MUTATED	1	2	1
MYH10 WILD-TYPE	15	10	5

'MYH10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S644. Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
MYH10 MUTATED	3	0	1
MYH10 WILD-TYPE	11	15	4

'MYH10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S645. Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
MYH10 MUTATED	1	2	1	0
MYH10 WILD-TYPE	11	9	7	3

'MYH10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S646. Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
MYH10 MUTATED	2	1	1
MYH10 WILD-TYPE	20	7	3

'MYH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S647. Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
MYH10 MUTATED	2	2	0
MYH10 WILD-TYPE	14	11	4

'MYH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S648. Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
MYH10 MUTATED	1	1	2
MYH10 WILD-TYPE	17	9	3

'ERF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S649. Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
ERF MUTATED	3	1	0
ERF WILD-TYPE	18	16	3

'ERF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S650. Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
ERF MUTATED	2	2	0
ERF WILD-TYPE	17	6	13

'ERF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S651. Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
ERF MUTATED	1	1	1	0	0
ERF WILD-TYPE	7	8	6	6	2

'ERF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S652. Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
ERF MUTATED	0	1	1	1	0
ERF WILD-TYPE	5	8	6	7	3

'ERF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S653. Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
ERF MUTATED	1	2	1
ERF WILD-TYPE	15	10	5

'ERF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S654. Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
ERF MUTATED	3	1	0
ERF WILD-TYPE	11	14	5

'ERF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S655. Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
ERF MUTATED	1	3	0	0
ERF WILD-TYPE	11	8	8	3

'ERF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S656. Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
ERF MUTATED	2	2	0
ERF WILD-TYPE	20	6	4

'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S657. Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
ERF MUTATED	2	2	0
ERF WILD-TYPE	14	11	4

'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S658. Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
ERF MUTATED	1	2	1
ERF WILD-TYPE	17	8	4

'OR10A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S659. Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
OR10A7 MUTATED	3	1	0
OR10A7 WILD-TYPE	18	16	3

'OR10A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S660. Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
OR10A7 MUTATED	2	1	1
OR10A7 WILD-TYPE	17	7	12

'OR10A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S661. Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
OR10A7 MUTATED	0	2	1	1	0
OR10A7 WILD-TYPE	8	7	6	5	2

'OR10A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S662. Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
OR10A7 MUTATED	0	2	0	1	1
OR10A7 WILD-TYPE	5	7	7	7	2

'OR10A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S663. Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
OR10A7 MUTATED	2	1	0
OR10A7 WILD-TYPE	14	11	6

'OR10A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S664. Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
OR10A7 MUTATED	2	1	0
OR10A7 WILD-TYPE	12	14	5

'OR10A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S665. Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
OR10A7 MUTATED	2	1	0	0
OR10A7 WILD-TYPE	10	10	8	3

'OR10A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S666. Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
OR10A7 MUTATED	2	1	0
OR10A7 WILD-TYPE	20	7	4

'OR10A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S667. Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
OR10A7 MUTATED	3	0	0
OR10A7 WILD-TYPE	13	13	4

'OR10A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S668. Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
OR10A7 MUTATED	2	1	0
OR10A7 WILD-TYPE	16	9	5

'BRDT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S669. Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
BRDT MUTATED	4	0	0
BRDT WILD-TYPE	17	17	3

'BRDT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S670. Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
BRDT MUTATED	2	1	1
BRDT WILD-TYPE	17	7	12

'BRDT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S671. Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
BRDT MUTATED	1	2	1
BRDT WILD-TYPE	15	10	5

'BRDT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S672. Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
BRDT MUTATED	2	1	1
BRDT WILD-TYPE	12	14	4

'BRDT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S673. Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
BRDT MUTATED	1	2	0	1
BRDT WILD-TYPE	11	9	8	2

'BRDT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S674. Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
BRDT MUTATED	2	1	1
BRDT WILD-TYPE	20	7	3

'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S675. Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
BRDT MUTATED	2	2	0
BRDT WILD-TYPE	14	11	4

'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S676. Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
BRDT MUTATED	1	1	2
BRDT WILD-TYPE	17	9	3

'CDHR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S677. Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
CDHR5 MUTATED	2	2	0
CDHR5 WILD-TYPE	19	15	3

'CDHR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S678. Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
CDHR5 MUTATED	2	1	1
CDHR5 WILD-TYPE	17	7	12

'CDHR5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S679. Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
CDHR5 MUTATED	3	1	0	0	0
CDHR5 WILD-TYPE	5	8	7	6	2

'CDHR5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S680. Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
CDHR5 MUTATED	2	1	1	0	0
CDHR5 WILD-TYPE	3	8	6	8	3

'CDHR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0449 (Fisher's exact test), Q value = 1

Table S681. Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
CDHR5 MUTATED	0	2	2
CDHR5 WILD-TYPE	16	10	4

Figure S24. Get High-res Image Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDHR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S682. Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
CDHR5 MUTATED	3	0	1
CDHR5 WILD-TYPE	11	15	4

'CDHR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S683. Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
CDHR5 MUTATED	1	2	0	1
CDHR5 WILD-TYPE	11	9	8	2

'CDHR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S684. Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
CDHR5 MUTATED	2	1	1
CDHR5 WILD-TYPE	20	7	3

'CDHR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 1

Table S685. Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
CDHR5 MUTATED	0	2	2
CDHR5 WILD-TYPE	16	11	2

Figure S25. Get High-res Image Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CDHR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S686. Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
CDHR5 MUTATED	2	1	1
CDHR5 WILD-TYPE	16	9	4

'EPS8L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S687. Gene #73: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
EPS8L3 MUTATED	3	0	0
EPS8L3 WILD-TYPE	18	17	3

'EPS8L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S688. Gene #73: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
EPS8L3 MUTATED	1	0	2
EPS8L3 WILD-TYPE	18	8	11

'EPS8L3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S689. Gene #73: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
EPS8L3 MUTATED	0	2	1	0	0
EPS8L3 WILD-TYPE	8	7	6	6	2

'EPS8L3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S690. Gene #73: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
EPS8L3 MUTATED	0	2	0	1	0
EPS8L3 WILD-TYPE	5	7	7	7	3

'GPR25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S691. Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
GPR25 MUTATED	1	2	0
GPR25 WILD-TYPE	20	15	3

'GPR25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S692. Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
GPR25 MUTATED	2	1	0
GPR25 WILD-TYPE	17	7	13

'GPR25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S693. Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
GPR25 MUTATED	1	2	0
GPR25 WILD-TYPE	15	10	6

'GPR25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S694. Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
GPR25 MUTATED	3	0	0
GPR25 WILD-TYPE	11	15	5

'GPR25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S695. Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
GPR25 MUTATED	1	2	0	0
GPR25 WILD-TYPE	11	9	8	3

'GPR25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S696. Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
GPR25 MUTATED	2	1	0
GPR25 WILD-TYPE	20	7	4

'GPR25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S697. Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
GPR25 MUTATED	3	0	0
GPR25 WILD-TYPE	13	13	4

'GPR25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0412 (Fisher's exact test), Q value = 1

Table S698. Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
GPR25 MUTATED	0	3	0
GPR25 WILD-TYPE	18	7	5

Figure S26. Get High-res Image Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PPARGC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S699. Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
PPARGC1B MUTATED	2	0	1
PPARGC1B WILD-TYPE	19	17	2

'PPARGC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S700. Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
PPARGC1B MUTATED	1	1	1
PPARGC1B WILD-TYPE	18	7	12

'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S701. Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
PPARGC1B MUTATED	0	2	1
PPARGC1B WILD-TYPE	16	10	5

'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S702. Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
PPARGC1B MUTATED	2	0	1
PPARGC1B WILD-TYPE	12	15	4

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0946 (Fisher's exact test), Q value = 1

Table S703. Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
PPARGC1B MUTATED	0	2	0	1
PPARGC1B WILD-TYPE	12	9	8	2

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S704. Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
PPARGC1B MUTATED	1	1	1
PPARGC1B WILD-TYPE	21	7	3

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S705. Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
PPARGC1B MUTATED	1	2	0
PPARGC1B WILD-TYPE	15	11	4

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S706. Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
PPARGC1B MUTATED	0	2	1
PPARGC1B WILD-TYPE	18	8	4

'FGF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S707. Gene #76: 'FGF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
FGF10 MUTATED	0	3	0
FGF10 WILD-TYPE	21	14	3

'FGF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S708. Gene #76: 'FGF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
FGF10 MUTATED	3	0	0
FGF10 WILD-TYPE	16	8	13

'FGF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S709. Gene #76: 'FGF10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
FGF10 MUTATED	2	1	0
FGF10 WILD-TYPE	14	11	6

'FGF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S710. Gene #76: 'FGF10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
FGF10 MUTATED	1	2	0
FGF10 WILD-TYPE	13	13	5

'FGF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S711. Gene #76: 'FGF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
FGF10 MUTATED	2	1	0	0
FGF10 WILD-TYPE	10	10	8	3

'FGF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S712. Gene #76: 'FGF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
FGF10 MUTATED	3	0	0
FGF10 WILD-TYPE	19	8	4

'SALL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S713. Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
SALL1 MUTATED	3	2	0
SALL1 WILD-TYPE	18	15	3

'SALL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S714. Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
SALL1 MUTATED	2	1	1
SALL1 WILD-TYPE	17	7	12

'SALL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S715. Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
SALL1 MUTATED	0	3	1	0	0
SALL1 WILD-TYPE	8	6	6	6	2

'SALL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S716. Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
SALL1 MUTATED	0	3	0	1	0
SALL1 WILD-TYPE	5	6	7	7	3

'SALL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S717. Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
SALL1 MUTATED	2	1	1
SALL1 WILD-TYPE	14	11	5

'SALL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S718. Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
SALL1 MUTATED	2	2	0
SALL1 WILD-TYPE	12	13	5

'SALL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S719. Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
SALL1 MUTATED	1	2	1	0
SALL1 WILD-TYPE	11	9	7	3

'SALL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S720. Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
SALL1 MUTATED	3	1	0
SALL1 WILD-TYPE	19	7	4

'SALL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S721. Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
SALL1 MUTATED	3	1	0
SALL1 WILD-TYPE	13	12	4

'SALL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S722. Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
SALL1 MUTATED	2	2	0
SALL1 WILD-TYPE	16	8	5

'VEPH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S723. Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
VEPH1 MUTATED	2	2	0
VEPH1 WILD-TYPE	19	15	3

'VEPH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S724. Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
VEPH1 MUTATED	3	0	1
VEPH1 WILD-TYPE	16	8	12

'VEPH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S725. Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
VEPH1 MUTATED	0	2	2	0	0
VEPH1 WILD-TYPE	8	7	5	6	2

'VEPH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S726. Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
VEPH1 MUTATED	0	2	0	2	0
VEPH1 WILD-TYPE	5	7	7	6	3

'VEPH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S727. Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
VEPH1 MUTATED	2	2	0
VEPH1 WILD-TYPE	14	10	6

'VEPH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S728. Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
VEPH1 MUTATED	3	1	0
VEPH1 WILD-TYPE	11	14	5

'VEPH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S729. Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
VEPH1 MUTATED	1	2	1	0
VEPH1 WILD-TYPE	11	9	7	3

'VEPH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S730. Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
VEPH1 MUTATED	3	1	0
VEPH1 WILD-TYPE	19	7	4

'VEPH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S731. Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
VEPH1 MUTATED	4	0	0
VEPH1 WILD-TYPE	12	13	4

'VEPH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S732. Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
VEPH1 MUTATED	1	3	0
VEPH1 WILD-TYPE	17	7	5

'ATRX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S733. Gene #79: 'ATRX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
ATRX MUTATED	3	0	0
ATRX WILD-TYPE	18	17	3

'ATRX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S734. Gene #79: 'ATRX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
ATRX MUTATED	2	1	0
ATRX WILD-TYPE	17	7	13

'ATRX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S735. Gene #79: 'ATRX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
ATRX MUTATED	1	2	0
ATRX WILD-TYPE	15	10	6

'ATRX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S736. Gene #79: 'ATRX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
ATRX MUTATED	2	1	0
ATRX WILD-TYPE	12	14	5

'ATRX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S737. Gene #79: 'ATRX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
ATRX MUTATED	1	2	0	0
ATRX WILD-TYPE	11	9	8	3

'ATRX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S738. Gene #79: 'ATRX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
ATRX MUTATED	2	1	0
ATRX WILD-TYPE	20	7	4

'ATRX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S739. Gene #79: 'ATRX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
ATRX MUTATED	2	1	0
ATRX WILD-TYPE	14	12	4

'ATRX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S740. Gene #79: 'ATRX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
ATRX MUTATED	1	1	1
ATRX WILD-TYPE	17	9	4

'ST6GALNAC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S741. Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
ST6GALNAC5 MUTATED	4	0	0
ST6GALNAC5 WILD-TYPE	17	17	3

'ST6GALNAC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S742. Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
ST6GALNAC5 MUTATED	2	0	2
ST6GALNAC5 WILD-TYPE	17	8	11

'ST6GALNAC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S743. Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
ST6GALNAC5 MUTATED	0	3	1	0	0
ST6GALNAC5 WILD-TYPE	8	6	6	6	2

'ST6GALNAC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S744. Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
ST6GALNAC5 MUTATED	0	3	0	1	0
ST6GALNAC5 WILD-TYPE	5	6	7	7	3

'ST6GALNAC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S745. Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
ST6GALNAC5 MUTATED	3	1	0
ST6GALNAC5 WILD-TYPE	13	11	6

'ST6GALNAC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S746. Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
ST6GALNAC5 MUTATED	1	3	0
ST6GALNAC5 WILD-TYPE	13	12	5

'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S747. Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
ST6GALNAC5 MUTATED	1	1	2	0
ST6GALNAC5 WILD-TYPE	11	10	6	3

'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S748. Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
ST6GALNAC5 MUTATED	4	0	0
ST6GALNAC5 WILD-TYPE	18	8	4

'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S749. Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
ST6GALNAC5 MUTATED	2	2	0
ST6GALNAC5 WILD-TYPE	14	11	4

'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S750. Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
ST6GALNAC5 MUTATED	3	1	0
ST6GALNAC5 WILD-TYPE	15	9	5

'DHX57 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S751. Gene #81: 'DHX57 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
DHX57 MUTATED	2	1	0
DHX57 WILD-TYPE	19	16	3

'DHX57 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S752. Gene #81: 'DHX57 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
DHX57 MUTATED	2	0	1
DHX57 WILD-TYPE	17	8	12

'DHX57 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S753. Gene #81: 'DHX57 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
DHX57 MUTATED	2	1	0
DHX57 WILD-TYPE	14	11	6

'DHX57 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S754. Gene #81: 'DHX57 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
DHX57 MUTATED	1	2	0
DHX57 WILD-TYPE	13	13	5

'DHX57 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S755. Gene #81: 'DHX57 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
DHX57 MUTATED	1	1	1	0
DHX57 WILD-TYPE	11	10	7	3

'DHX57 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S756. Gene #81: 'DHX57 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
DHX57 MUTATED	3	0	0
DHX57 WILD-TYPE	19	8	4

'GNL3L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S757. Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
GNL3L MUTATED	3	0	0
GNL3L WILD-TYPE	18	17	3

'GNL3L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S758. Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
GNL3L MUTATED	2	0	1
GNL3L WILD-TYPE	17	8	12

'GNL3L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S759. Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
GNL3L MUTATED	0	2	0	1	0
GNL3L WILD-TYPE	8	7	7	5	2

'GNL3L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S760. Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
GNL3L MUTATED	0	2	0	0	1
GNL3L WILD-TYPE	5	7	7	8	2

'GNL3L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S761. Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
GNL3L MUTATED	3	0	0
GNL3L WILD-TYPE	13	12	6

'GNL3L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S762. Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
GNL3L MUTATED	0	3	0
GNL3L WILD-TYPE	14	12	5

'GNL3L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S763. Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
GNL3L MUTATED	2	0	1	0
GNL3L WILD-TYPE	10	11	7	3

'GNL3L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S764. Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
GNL3L MUTATED	3	0	0
GNL3L WILD-TYPE	19	8	4

'GNL3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S765. Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
GNL3L MUTATED	2	1	0
GNL3L WILD-TYPE	14	12	4

'GNL3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S766. Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
GNL3L MUTATED	3	0	0
GNL3L WILD-TYPE	15	10	5

'MST1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S767. Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
MST1 MUTATED	3	2	0
MST1 WILD-TYPE	18	15	3

'MST1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S768. Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
MST1 MUTATED	2	1	2
MST1 WILD-TYPE	17	7	11

'MST1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S769. Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
MST1 MUTATED	0	1	2	0	0
MST1 WILD-TYPE	8	8	5	6	2

'MST1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S770. Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
MST1 MUTATED	0	1	0	2	0
MST1 WILD-TYPE	5	8	7	6	3

'MST1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S771. Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
MST1 MUTATED	2	3	0
MST1 WILD-TYPE	14	9	6

'MST1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S772. Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
MST1 MUTATED	4	1	0
MST1 WILD-TYPE	10	14	5

'MST1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S773. Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
MST1 MUTATED	1	3	1	0
MST1 WILD-TYPE	11	8	7	3

'MST1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S774. Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
MST1 MUTATED	3	2	0
MST1 WILD-TYPE	19	6	4

'MST1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S775. Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
MST1 MUTATED	3	1	1
MST1 WILD-TYPE	13	12	3

'MST1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S776. Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
MST1 MUTATED	2	3	0
MST1 WILD-TYPE	16	7	5

'GRB7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S777. Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
GRB7 MUTATED	1	2	1
GRB7 WILD-TYPE	20	15	2

'GRB7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S778. Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
GRB7 MUTATED	4	0	0
GRB7 WILD-TYPE	15	8	13

'GRB7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0546 (Fisher's exact test), Q value = 1

Table S779. Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
GRB7 MUTATED	0	0	3	1	0
GRB7 WILD-TYPE	8	9	4	5	2

'GRB7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S780. Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
GRB7 MUTATED	0	0	1	3	0
GRB7 WILD-TYPE	5	9	6	5	3

'GRB7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S781. Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
GRB7 MUTATED	2	2	0
GRB7 WILD-TYPE	14	10	6

'GRB7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S782. Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
GRB7 MUTATED	2	2	0
GRB7 WILD-TYPE	12	13	5

'GRB7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S783. Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
GRB7 MUTATED	2	2	0	0
GRB7 WILD-TYPE	10	9	8	3

'GRB7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S784. Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
GRB7 MUTATED	3	1	0
GRB7 WILD-TYPE	19	7	4

'GRB7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S785. Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
GRB7 MUTATED	4	0	0
GRB7 WILD-TYPE	12	13	4

'GRB7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S786. Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
GRB7 MUTATED	2	2	0
GRB7 WILD-TYPE	16	8	5

'TMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S787. Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
TMC4 MUTATED	4	1	0
TMC4 WILD-TYPE	17	16	3

'TMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S788. Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
TMC4 MUTATED	2	1	2
TMC4 WILD-TYPE	17	7	11

'TMC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S789. Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
TMC4 MUTATED	0	2	1	0	1
TMC4 WILD-TYPE	8	7	6	6	1

'TMC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S790. Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
TMC4 MUTATED	0	2	1	1	0
TMC4 WILD-TYPE	5	7	6	7	3

'TMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S791. Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
TMC4 MUTATED	2	1	1
TMC4 WILD-TYPE	14	11	5

'TMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S792. Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
TMC4 MUTATED	2	2	0
TMC4 WILD-TYPE	12	13	5

'TMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S793. Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
TMC4 MUTATED	0	2	2	0
TMC4 WILD-TYPE	12	9	6	3

'TMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S794. Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
TMC4 MUTATED	3	1	0
TMC4 WILD-TYPE	19	7	4

'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S795. Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
TMC4 MUTATED	1	3	0
TMC4 WILD-TYPE	15	10	4

'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S796. Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
TMC4 MUTATED	2	2	0
TMC4 WILD-TYPE	16	8	5

'MED9 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S797. Gene #86: 'MED9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
MED9 MUTATED	2	1	0
MED9 WILD-TYPE	19	16	3

'MED9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S798. Gene #86: 'MED9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
MED9 MUTATED	2	0	1
MED9 WILD-TYPE	17	8	12

'MED9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S799. Gene #86: 'MED9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
MED9 MUTATED	1	1	1
MED9 WILD-TYPE	15	11	5

'MED9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S800. Gene #86: 'MED9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
MED9 MUTATED	1	1	1
MED9 WILD-TYPE	13	14	4

'MED9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S801. Gene #86: 'MED9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
MED9 MUTATED	1	1	0	1
MED9 WILD-TYPE	11	10	8	2

'MED9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S802. Gene #86: 'MED9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
MED9 MUTATED	2	0	1
MED9 WILD-TYPE	20	8	3

'MED9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S803. Gene #86: 'MED9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
MED9 MUTATED	2	1	0
MED9 WILD-TYPE	14	12	4

'MED9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S804. Gene #86: 'MED9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
MED9 MUTATED	1	1	1
MED9 WILD-TYPE	17	9	4

'WASF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S805. Gene #87: 'WASF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
WASF3 MUTATED	1	2	0
WASF3 WILD-TYPE	20	15	3

'WASF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S806. Gene #87: 'WASF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
WASF3 MUTATED	2	0	1
WASF3 WILD-TYPE	17	8	12

'WASF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S807. Gene #87: 'WASF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
WASF3 MUTATED	1	1	1
WASF3 WILD-TYPE	15	11	5

'WASF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S808. Gene #87: 'WASF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
WASF3 MUTATED	1	1	1
WASF3 WILD-TYPE	13	14	4

'WASF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S809. Gene #87: 'WASF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
WASF3 MUTATED	1	1	0	1
WASF3 WILD-TYPE	11	10	8	2

'WASF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S810. Gene #87: 'WASF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
WASF3 MUTATED	2	0	1
WASF3 WILD-TYPE	20	8	3

'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S811. Gene #87: 'WASF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
WASF3 MUTATED	1	1	1
WASF3 WILD-TYPE	15	12	3

'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S812. Gene #87: 'WASF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
WASF3 MUTATED	2	0	1
WASF3 WILD-TYPE	16	10	4

'GIT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S813. Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
GIT1 MUTATED	2	1	0
GIT1 WILD-TYPE	19	16	3

'GIT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S814. Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
GIT1 MUTATED	2	1	0
GIT1 WILD-TYPE	17	7	13

'GIT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S815. Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
GIT1 MUTATED	1	1	1	0	0
GIT1 WILD-TYPE	7	8	6	6	2

'GIT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S816. Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
GIT1 MUTATED	1	1	0	1	0
GIT1 WILD-TYPE	4	8	7	7	3

'GIT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S817. Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
GIT1 MUTATED	1	1	1
GIT1 WILD-TYPE	15	11	5

'GIT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S818. Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
GIT1 MUTATED	2	1	0
GIT1 WILD-TYPE	12	14	5

'GIT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S819. Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
GIT1 MUTATED	1	2	0	0
GIT1 WILD-TYPE	11	9	8	3

'GIT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S820. Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
GIT1 MUTATED	2	1	0
GIT1 WILD-TYPE	20	7	4

'GIT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S821. Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
GIT1 MUTATED	2	1	0
GIT1 WILD-TYPE	14	12	4

'GIT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S822. Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
GIT1 MUTATED	1	2	0
GIT1 WILD-TYPE	17	8	5

'SV2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S823. Gene #89: 'SV2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
SV2A MUTATED	1	2	0
SV2A WILD-TYPE	20	15	3

'SV2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S824. Gene #89: 'SV2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
SV2A MUTATED	2	1	0
SV2A WILD-TYPE	17	7	13

'SV2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S825. Gene #89: 'SV2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
SV2A MUTATED	2	1	0
SV2A WILD-TYPE	14	11	6

'SV2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S826. Gene #89: 'SV2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
SV2A MUTATED	2	1	0
SV2A WILD-TYPE	12	14	5

'SV2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S827. Gene #89: 'SV2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
SV2A MUTATED	2	1	0	0
SV2A WILD-TYPE	10	10	8	3

'SV2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S828. Gene #89: 'SV2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
SV2A MUTATED	2	1	0
SV2A WILD-TYPE	20	7	4

'UGP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S829. Gene #90: 'UGP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
UGP2 MUTATED	3	1	0
UGP2 WILD-TYPE	18	16	3

'UGP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S830. Gene #90: 'UGP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
UGP2 MUTATED	2	0	2
UGP2 WILD-TYPE	17	8	11

'UGP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S831. Gene #90: 'UGP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
UGP2 MUTATED	0	2	1
UGP2 WILD-TYPE	16	10	5

'UGP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S832. Gene #90: 'UGP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
UGP2 MUTATED	1	1	1
UGP2 WILD-TYPE	13	14	4

'UGP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S833. Gene #90: 'UGP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
UGP2 MUTATED	0	1	1	1
UGP2 WILD-TYPE	12	10	7	2

'UGP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S834. Gene #90: 'UGP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
UGP2 MUTATED	2	0	1
UGP2 WILD-TYPE	20	8	3

'UGP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S835. Gene #90: 'UGP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
UGP2 MUTATED	1	2	0
UGP2 WILD-TYPE	15	11	4

'UGP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S836. Gene #90: 'UGP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
UGP2 MUTATED	1	1	1
UGP2 WILD-TYPE	17	9	4

'ERCC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S837. Gene #91: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
ERCC3 MUTATED	3	0	0
ERCC3 WILD-TYPE	18	17	3

'ERCC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S838. Gene #91: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
ERCC3 MUTATED	1	2	0
ERCC3 WILD-TYPE	18	6	13

'ERCC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S839. Gene #91: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
ERCC3 MUTATED	0	2	1
ERCC3 WILD-TYPE	16	10	5

'ERCC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S840. Gene #91: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
ERCC3 MUTATED	3	0	0
ERCC3 WILD-TYPE	11	15	5

'ERCC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 1

Table S841. Gene #91: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
ERCC3 MUTATED	0	3	0	0
ERCC3 WILD-TYPE	12	8	8	3

'ERCC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S842. Gene #91: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
ERCC3 MUTATED	1	2	0
ERCC3 WILD-TYPE	21	6	4

'ERCC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S843. Gene #91: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
ERCC3 MUTATED	1	2	0
ERCC3 WILD-TYPE	15	11	4

'ERCC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S844. Gene #91: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
ERCC3 MUTATED	0	2	1
ERCC3 WILD-TYPE	18	8	4

'ARMCX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S845. Gene #92: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
ARMCX3 MUTATED	2	0	1
ARMCX3 WILD-TYPE	19	17	2

'ARMCX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S846. Gene #92: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
ARMCX3 MUTATED	2	0	1
ARMCX3 WILD-TYPE	17	8	12

'ARMCX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S847. Gene #92: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
ARMCX3 MUTATED	1	1	1	0	0
ARMCX3 WILD-TYPE	7	8	6	6	2

'ARMCX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S848. Gene #92: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
ARMCX3 MUTATED	1	1	0	1	0
ARMCX3 WILD-TYPE	4	8	7	7	3

'ARMCX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S849. Gene #92: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
ARMCX3 MUTATED	2	0	1
ARMCX3 WILD-TYPE	14	12	5

'ARMCX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S850. Gene #92: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
ARMCX3 MUTATED	0	2	1
ARMCX3 WILD-TYPE	14	13	4

'ARMCX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S851. Gene #92: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
ARMCX3 MUTATED	2	0	0	1
ARMCX3 WILD-TYPE	10	11	8	2

'ARMCX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S852. Gene #92: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
ARMCX3 MUTATED	2	0	1
ARMCX3 WILD-TYPE	20	8	3

'ARMCX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S853. Gene #92: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
ARMCX3 MUTATED	2	1	0
ARMCX3 WILD-TYPE	14	12	4

'ARMCX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S854. Gene #92: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
ARMCX3 MUTATED	2	0	1
ARMCX3 WILD-TYPE	16	10	4

'TMCO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S855. Gene #93: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
TMCO1 MUTATED	2	1	0
TMCO1 WILD-TYPE	19	16	3

'TMCO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S856. Gene #93: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
TMCO1 MUTATED	3	0	0
TMCO1 WILD-TYPE	16	8	13

'TMCO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S857. Gene #93: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
TMCO1 MUTATED	0	1	2	0	0
TMCO1 WILD-TYPE	8	8	5	6	2

'TMCO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S858. Gene #93: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
TMCO1 MUTATED	0	1	0	2	0
TMCO1 WILD-TYPE	5	8	7	6	3

'TMCO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S859. Gene #93: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
TMCO1 MUTATED	1	2	0
TMCO1 WILD-TYPE	15	10	6

'TMCO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S860. Gene #93: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
TMCO1 MUTATED	2	1	0
TMCO1 WILD-TYPE	12	14	5

'TMCO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S861. Gene #93: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
TMCO1 MUTATED	1	2	0	0
TMCO1 WILD-TYPE	11	9	8	3

'TMCO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S862. Gene #93: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
TMCO1 MUTATED	3	0	0
TMCO1 WILD-TYPE	19	8	4

'TMCO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S863. Gene #93: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
TMCO1 MUTATED	3	0	0
TMCO1 WILD-TYPE	13	13	4

'TMCO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S864. Gene #93: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
TMCO1 MUTATED	1	2	0
TMCO1 WILD-TYPE	17	8	5

'HMX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S865. Gene #94: 'HMX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
HMX2 MUTATED	3	0	0
HMX2 WILD-TYPE	18	17	3

'HMX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S866. Gene #94: 'HMX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
HMX2 MUTATED	1	1	1
HMX2 WILD-TYPE	18	7	12

'HMX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0334 (Fisher's exact test), Q value = 1

Table S867. Gene #94: 'HMX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
HMX2 MUTATED	0	1	2
HMX2 WILD-TYPE	16	11	4

Figure S27. Get High-res Image Gene #94: 'HMX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HMX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S868. Gene #94: 'HMX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
HMX2 MUTATED	2	0	1
HMX2 WILD-TYPE	12	15	4

'HMX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0935 (Fisher's exact test), Q value = 1

Table S869. Gene #94: 'HMX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
HMX2 MUTATED	0	2	0	1
HMX2 WILD-TYPE	12	9	8	2

'HMX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S870. Gene #94: 'HMX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
HMX2 MUTATED	1	1	1
HMX2 WILD-TYPE	21	7	3

'HMX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S871. Gene #94: 'HMX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
HMX2 MUTATED	1	2	0
HMX2 WILD-TYPE	15	11	4

'HMX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S872. Gene #94: 'HMX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
HMX2 MUTATED	0	2	1
HMX2 WILD-TYPE	18	8	4

'AARS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S873. Gene #95: 'AARS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
AARS2 MUTATED	3	1	0
AARS2 WILD-TYPE	18	16	3

'AARS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S874. Gene #95: 'AARS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
AARS2 MUTATED	2	1	1
AARS2 WILD-TYPE	17	7	12

'AARS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S875. Gene #95: 'AARS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
AARS2 MUTATED	0	2	1	0	0
AARS2 WILD-TYPE	8	7	6	6	2

'AARS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S876. Gene #95: 'AARS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
AARS2 MUTATED	0	2	0	1	0
AARS2 WILD-TYPE	5	7	7	7	3

'AARS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S877. Gene #95: 'AARS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
AARS2 MUTATED	1	1	2
AARS2 WILD-TYPE	15	11	4

'AARS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S878. Gene #95: 'AARS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
AARS2 MUTATED	3	0	1
AARS2 WILD-TYPE	11	15	4

'AARS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S879. Gene #95: 'AARS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
AARS2 MUTATED	1	2	0	1
AARS2 WILD-TYPE	11	9	8	2

'AARS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S880. Gene #95: 'AARS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
AARS2 MUTATED	2	1	1
AARS2 WILD-TYPE	20	7	3

'AARS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S881. Gene #95: 'AARS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
AARS2 MUTATED	2	2	0
AARS2 WILD-TYPE	14	11	4

'AARS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0381 (Fisher's exact test), Q value = 1

Table S882. Gene #95: 'AARS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
AARS2 MUTATED	0	3	1
AARS2 WILD-TYPE	18	7	4

Figure S28. Get High-res Image Gene #95: 'AARS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ALS2CR11 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S883. Gene #96: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
ALS2CR11 MUTATED	2	1	0
ALS2CR11 WILD-TYPE	19	16	3

'ALS2CR11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S884. Gene #96: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
ALS2CR11 MUTATED	1	1	1
ALS2CR11 WILD-TYPE	18	7	12

'ALS2CR11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S885. Gene #96: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
ALS2CR11 MUTATED	1	1	1	0	0
ALS2CR11 WILD-TYPE	7	8	6	6	2

'ALS2CR11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S886. Gene #96: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
ALS2CR11 MUTATED	1	1	0	1	0
ALS2CR11 WILD-TYPE	4	8	7	7	3

'ALS2CR11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S887. Gene #96: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
ALS2CR11 MUTATED	1	2	0
ALS2CR11 WILD-TYPE	15	10	6

'ALS2CR11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S888. Gene #96: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
ALS2CR11 MUTATED	2	1	0
ALS2CR11 WILD-TYPE	12	14	5

'ALS2CR11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S889. Gene #96: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
ALS2CR11 MUTATED	0	2	1	0
ALS2CR11 WILD-TYPE	12	9	7	3

'ALS2CR11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S890. Gene #96: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
ALS2CR11 MUTATED	2	1	0
ALS2CR11 WILD-TYPE	20	7	4

'ALS2CR11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S891. Gene #96: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
ALS2CR11 MUTATED	2	1	0
ALS2CR11 WILD-TYPE	14	12	4

'ALS2CR11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S892. Gene #96: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
ALS2CR11 MUTATED	1	2	0
ALS2CR11 WILD-TYPE	17	8	5

'ARFGAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S893. Gene #97: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
ARFGAP3 MUTATED	2	1	0
ARFGAP3 WILD-TYPE	19	16	3

'ARFGAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S894. Gene #97: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
ARFGAP3 MUTATED	1	1	1
ARFGAP3 WILD-TYPE	18	7	12

'ARFGAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S895. Gene #97: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
ARFGAP3 MUTATED	1	2	0
ARFGAP3 WILD-TYPE	15	10	6

'ARFGAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S896. Gene #97: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
ARFGAP3 MUTATED	2	1	0
ARFGAP3 WILD-TYPE	12	14	5

'ARFGAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S897. Gene #97: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
ARFGAP3 MUTATED	1	1	1	0
ARFGAP3 WILD-TYPE	11	10	7	3

'ARFGAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S898. Gene #97: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
ARFGAP3 MUTATED	2	1	0
ARFGAP3 WILD-TYPE	20	7	4

'ARFGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S899. Gene #97: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
ARFGAP3 MUTATED	0	2	1
ARFGAP3 WILD-TYPE	16	11	3

'ARFGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S900. Gene #97: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
ARFGAP3 MUTATED	2	0	1
ARFGAP3 WILD-TYPE	16	10	4

'SMG7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S901. Gene #98: 'SMG7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
SMG7 MUTATED	2	1	0
SMG7 WILD-TYPE	19	16	3

'SMG7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S902. Gene #98: 'SMG7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
SMG7 MUTATED	3	0	0
SMG7 WILD-TYPE	16	8	13

'SMG7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S903. Gene #98: 'SMG7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
SMG7 MUTATED	0	1	2	0	0
SMG7 WILD-TYPE	8	8	5	6	2

'SMG7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S904. Gene #98: 'SMG7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
SMG7 MUTATED	0	1	0	2	0
SMG7 WILD-TYPE	5	8	7	6	3

'SMG7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S905. Gene #98: 'SMG7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
SMG7 MUTATED	1	2	0
SMG7 WILD-TYPE	15	10	6

'SMG7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S906. Gene #98: 'SMG7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
SMG7 MUTATED	2	1	0
SMG7 WILD-TYPE	12	14	5

'SMG7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S907. Gene #98: 'SMG7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
SMG7 MUTATED	1	2	0	0
SMG7 WILD-TYPE	11	9	8	3

'SMG7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S908. Gene #98: 'SMG7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
SMG7 MUTATED	3	0	0
SMG7 WILD-TYPE	19	8	4

'SMG7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S909. Gene #98: 'SMG7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
SMG7 MUTATED	3	0	0
SMG7 WILD-TYPE	13	13	4

'SMG7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S910. Gene #98: 'SMG7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
SMG7 MUTATED	1	2	0
SMG7 WILD-TYPE	17	8	5

'CHGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S911. Gene #99: 'CHGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
CHGA MUTATED	1	1	1
CHGA WILD-TYPE	20	16	2

'CHGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S912. Gene #99: 'CHGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
CHGA MUTATED	1	2	0
CHGA WILD-TYPE	18	6	13

'CHGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0695 (Fisher's exact test), Q value = 1

Table S913. Gene #99: 'CHGA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
CHGA MUTATED	0	3	0
CHGA WILD-TYPE	16	9	6

'CHGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S914. Gene #99: 'CHGA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
CHGA MUTATED	3	0	0
CHGA WILD-TYPE	11	15	5

'CHGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0938 (Fisher's exact test), Q value = 1

Table S915. Gene #99: 'CHGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
CHGA MUTATED	0	3	0	0
CHGA WILD-TYPE	12	8	8	3

'CHGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S916. Gene #99: 'CHGA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
CHGA MUTATED	1	2	0
CHGA WILD-TYPE	21	6	4

'CHGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S917. Gene #99: 'CHGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
CHGA MUTATED	2	1	0
CHGA WILD-TYPE	14	12	4

'CHGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0412 (Fisher's exact test), Q value = 1

Table S918. Gene #99: 'CHGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
CHGA MUTATED	0	3	0
CHGA WILD-TYPE	18	7	5

Figure S29. Get High-res Image Gene #99: 'CHGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM63B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S919. Gene #100: 'FAM63B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
FAM63B MUTATED	2	0	1
FAM63B WILD-TYPE	19	17	2

'FAM63B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S920. Gene #100: 'FAM63B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
FAM63B MUTATED	2	0	1
FAM63B WILD-TYPE	17	8	12

'FAM63B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S921. Gene #100: 'FAM63B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
FAM63B MUTATED	0	2	1
FAM63B WILD-TYPE	16	10	5

'FAM63B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S922. Gene #100: 'FAM63B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
FAM63B MUTATED	2	0	1
FAM63B WILD-TYPE	12	15	4

'FAM63B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0946 (Fisher's exact test), Q value = 1

Table S923. Gene #100: 'FAM63B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
FAM63B MUTATED	0	2	0	1
FAM63B WILD-TYPE	12	9	8	2

'FAM63B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S924. Gene #100: 'FAM63B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
FAM63B MUTATED	1	1	1
FAM63B WILD-TYPE	21	7	3

'FAM63B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S925. Gene #100: 'FAM63B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
FAM63B MUTATED	1	1	1
FAM63B WILD-TYPE	15	12	3

'FAM63B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S926. Gene #100: 'FAM63B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
FAM63B MUTATED	0	2	1
FAM63B WILD-TYPE	18	8	4

'VPS36 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S927. Gene #101: 'VPS36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
VPS36 MUTATED	2	1	0
VPS36 WILD-TYPE	19	16	3

'VPS36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S928. Gene #101: 'VPS36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
VPS36 MUTATED	2	0	1
VPS36 WILD-TYPE	17	8	12

'VPS36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S929. Gene #101: 'VPS36 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
VPS36 MUTATED	1	2	0
VPS36 WILD-TYPE	15	10	6

'VPS36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S930. Gene #101: 'VPS36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
VPS36 MUTATED	1	2	0
VPS36 WILD-TYPE	13	13	5

'VPS36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S931. Gene #101: 'VPS36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
VPS36 MUTATED	1	1	1	0
VPS36 WILD-TYPE	11	10	7	3

'VPS36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S932. Gene #101: 'VPS36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
VPS36 MUTATED	3	0	0
VPS36 WILD-TYPE	19	8	4

'VPS36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S933. Gene #101: 'VPS36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
VPS36 MUTATED	2	1	0
VPS36 WILD-TYPE	14	12	4

'VPS36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S934. Gene #101: 'VPS36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
VPS36 MUTATED	2	1	0
VPS36 WILD-TYPE	16	9	5

'MAP3K7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S935. Gene #102: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
MAP3K7 MUTATED	3	0	0
MAP3K7 WILD-TYPE	18	17	3

'MAP3K7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S936. Gene #102: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
MAP3K7 MUTATED	1	1	1
MAP3K7 WILD-TYPE	18	7	12

'MAP3K7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S937. Gene #102: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
MAP3K7 MUTATED	0	1	1	1	0
MAP3K7 WILD-TYPE	8	8	6	5	2

'MAP3K7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S938. Gene #102: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
MAP3K7 MUTATED	0	1	1	1	0
MAP3K7 WILD-TYPE	5	8	6	7	3

'MAP3K7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 1

Table S939. Gene #102: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
MAP3K7 MUTATED	0	1	2
MAP3K7 WILD-TYPE	16	11	4

Figure S30. Get High-res Image Gene #102: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAP3K7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S940. Gene #102: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
MAP3K7 MUTATED	2	0	1
MAP3K7 WILD-TYPE	12	15	4

'MAP3K7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S941. Gene #102: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
MAP3K7 MUTATED	0	2	1	0
MAP3K7 WILD-TYPE	12	9	7	3

'MAP3K7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S942. Gene #102: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
MAP3K7 MUTATED	1	1	1
MAP3K7 WILD-TYPE	21	7	3

'MAP3K7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S943. Gene #102: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
MAP3K7 MUTATED	1	2	0
MAP3K7 WILD-TYPE	15	11	4

'MAP3K7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S944. Gene #102: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
MAP3K7 MUTATED	0	2	1
MAP3K7 WILD-TYPE	18	8	4

'OTX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S945. Gene #103: 'OTX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
OTX1 MUTATED	2	2	0
OTX1 WILD-TYPE	19	15	3

'OTX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S946. Gene #103: 'OTX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
OTX1 MUTATED	4	0	0
OTX1 WILD-TYPE	15	8	13

'OTX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S947. Gene #103: 'OTX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
OTX1 MUTATED	1	0	2	1	0
OTX1 WILD-TYPE	7	9	5	5	2

'OTX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S948. Gene #103: 'OTX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
OTX1 MUTATED	1	0	0	2	1
OTX1 WILD-TYPE	4	9	7	6	2

'OTX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S949. Gene #103: 'OTX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
OTX1 MUTATED	2	2	0
OTX1 WILD-TYPE	14	10	6

'OTX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S950. Gene #103: 'OTX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
OTX1 MUTATED	2	2	0
OTX1 WILD-TYPE	12	13	5

'OTX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S951. Gene #103: 'OTX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
OTX1 MUTATED	2	2	0	0
OTX1 WILD-TYPE	10	9	8	3

'OTX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S952. Gene #103: 'OTX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
OTX1 MUTATED	3	1	0
OTX1 WILD-TYPE	19	7	4

'OTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S953. Gene #103: 'OTX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
OTX1 MUTATED	4	0	0
OTX1 WILD-TYPE	12	13	4

'OTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S954. Gene #103: 'OTX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
OTX1 MUTATED	2	2	0
OTX1 WILD-TYPE	16	8	5

'THBS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S955. Gene #104: 'THBS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
THBS1 MUTATED	2	1	0
THBS1 WILD-TYPE	19	16	3

'THBS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S956. Gene #104: 'THBS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
THBS1 MUTATED	2	0	1
THBS1 WILD-TYPE	17	8	12

'THBS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S957. Gene #104: 'THBS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
THBS1 MUTATED	1	1	1
THBS1 WILD-TYPE	15	11	5

'THBS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S958. Gene #104: 'THBS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
THBS1 MUTATED	1	1	1
THBS1 WILD-TYPE	13	14	4

'THBS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S959. Gene #104: 'THBS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
THBS1 MUTATED	1	1	0	1
THBS1 WILD-TYPE	11	10	8	2

'THBS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S960. Gene #104: 'THBS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
THBS1 MUTATED	2	0	1
THBS1 WILD-TYPE	20	8	3

'INTS7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S961. Gene #105: 'INTS7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
INTS7 MUTATED	2	1	0
INTS7 WILD-TYPE	19	16	3

'INTS7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S962. Gene #105: 'INTS7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
INTS7 MUTATED	2	1	0
INTS7 WILD-TYPE	17	7	13

'INTS7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S963. Gene #105: 'INTS7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
INTS7 MUTATED	1	2	0
INTS7 WILD-TYPE	15	10	6

'INTS7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S964. Gene #105: 'INTS7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
INTS7 MUTATED	2	1	0
INTS7 WILD-TYPE	12	14	5

'INTS7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S965. Gene #105: 'INTS7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
INTS7 MUTATED	1	2	0	0
INTS7 WILD-TYPE	11	9	8	3

'INTS7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S966. Gene #105: 'INTS7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
INTS7 MUTATED	2	1	0
INTS7 WILD-TYPE	20	7	4

'INTS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S967. Gene #105: 'INTS7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
INTS7 MUTATED	2	1	0
INTS7 WILD-TYPE	14	12	4

'INTS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S968. Gene #105: 'INTS7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
INTS7 MUTATED	1	1	1
INTS7 WILD-TYPE	17	9	4

'ZNF644 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S969. Gene #106: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
ZNF644 MUTATED	2	1	0
ZNF644 WILD-TYPE	19	16	3

'ZNF644 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S970. Gene #106: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
ZNF644 MUTATED	2	0	1
ZNF644 WILD-TYPE	17	8	12

'ZNF644 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S971. Gene #106: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
ZNF644 MUTATED	1	1	1
ZNF644 WILD-TYPE	15	11	5

'ZNF644 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S972. Gene #106: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
ZNF644 MUTATED	1	1	1
ZNF644 WILD-TYPE	13	14	4

'ZNF644 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S973. Gene #106: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
ZNF644 MUTATED	1	1	0	1
ZNF644 WILD-TYPE	11	10	8	2

'ZNF644 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S974. Gene #106: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
ZNF644 MUTATED	2	0	1
ZNF644 WILD-TYPE	20	8	3

'ZNF644 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S975. Gene #106: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
ZNF644 MUTATED	2	1	0
ZNF644 WILD-TYPE	14	12	4

'ZNF644 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S976. Gene #106: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
ZNF644 MUTATED	1	1	1
ZNF644 WILD-TYPE	17	9	4

'NFAT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S977. Gene #107: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
NFAT5 MUTATED	3	0	0
NFAT5 WILD-TYPE	18	17	3

'NFAT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S978. Gene #107: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
NFAT5 MUTATED	1	0	2
NFAT5 WILD-TYPE	18	8	11

'NFAT5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S979. Gene #107: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
NFAT5 MUTATED	0	2	1	0	0
NFAT5 WILD-TYPE	8	7	6	6	2

'NFAT5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S980. Gene #107: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
NFAT5 MUTATED	0	2	0	1	0
NFAT5 WILD-TYPE	5	7	7	7	3

'NFAT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S981. Gene #107: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
NFAT5 MUTATED	2	1	0
NFAT5 WILD-TYPE	14	11	6

'NFAT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S982. Gene #107: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
NFAT5 MUTATED	2	1	0
NFAT5 WILD-TYPE	12	14	5

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S983. Gene #107: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
NFAT5 MUTATED	1	1	1	0
NFAT5 WILD-TYPE	11	10	7	3

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S984. Gene #107: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
NFAT5 MUTATED	3	0	0
NFAT5 WILD-TYPE	19	8	4

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S985. Gene #107: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
NFAT5 MUTATED	3	0	0
NFAT5 WILD-TYPE	13	13	4

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S986. Gene #107: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
NFAT5 MUTATED	2	1	0
NFAT5 WILD-TYPE	16	9	5

'WHSC1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S987. Gene #108: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
WHSC1L1 MUTATED	1	2	0
WHSC1L1 WILD-TYPE	20	15	3

'WHSC1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S988. Gene #108: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
WHSC1L1 MUTATED	1	2	0
WHSC1L1 WILD-TYPE	18	6	13

'WHSC1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S989. Gene #108: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
WHSC1L1 MUTATED	1	1	1
WHSC1L1 WILD-TYPE	15	11	5

'WHSC1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S990. Gene #108: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
WHSC1L1 MUTATED	2	1	0
WHSC1L1 WILD-TYPE	12	14	5

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S991. Gene #108: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
WHSC1L1 MUTATED	1	2	0	0
WHSC1L1 WILD-TYPE	11	9	8	3

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S992. Gene #108: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
WHSC1L1 MUTATED	1	2	0
WHSC1L1 WILD-TYPE	21	6	4

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S993. Gene #108: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
WHSC1L1 MUTATED	1	2	0
WHSC1L1 WILD-TYPE	15	11	4

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S994. Gene #108: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
WHSC1L1 MUTATED	1	2	0
WHSC1L1 WILD-TYPE	17	8	5

'KIAA1211 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S995. Gene #109: 'KIAA1211 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
KIAA1211 MUTATED	3	0	0
KIAA1211 WILD-TYPE	18	17	3

'KIAA1211 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S996. Gene #109: 'KIAA1211 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
KIAA1211 MUTATED	1	0	2
KIAA1211 WILD-TYPE	18	8	11

'KIAA1211 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S997. Gene #109: 'KIAA1211 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
KIAA1211 MUTATED	1	1	1
KIAA1211 WILD-TYPE	15	11	5

'KIAA1211 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S998. Gene #109: 'KIAA1211 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
KIAA1211 MUTATED	1	1	1
KIAA1211 WILD-TYPE	13	14	4

'KIAA1211 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S999. Gene #109: 'KIAA1211 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
KIAA1211 MUTATED	0	1	1	1
KIAA1211 WILD-TYPE	12	10	7	2

'KIAA1211 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1000. Gene #109: 'KIAA1211 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
KIAA1211 MUTATED	2	0	1
KIAA1211 WILD-TYPE	20	8	3

'KIAA1211 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S1001. Gene #109: 'KIAA1211 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
KIAA1211 MUTATED	1	2	0
KIAA1211 WILD-TYPE	15	11	4

'KIAA1211 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1002. Gene #109: 'KIAA1211 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
KIAA1211 MUTATED	1	1	1
KIAA1211 WILD-TYPE	17	9	4

'NAGPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S1003. Gene #110: 'NAGPA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
NAGPA MUTATED	1	2	0
NAGPA WILD-TYPE	20	15	3

'NAGPA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S1004. Gene #110: 'NAGPA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
NAGPA MUTATED	3	0	0
NAGPA WILD-TYPE	16	8	13

'NAGPA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1005. Gene #110: 'NAGPA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
NAGPA MUTATED	2	1	0
NAGPA WILD-TYPE	14	11	6

'NAGPA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1006. Gene #110: 'NAGPA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
NAGPA MUTATED	1	2	0
NAGPA WILD-TYPE	13	13	5

'NAGPA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1007. Gene #110: 'NAGPA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
NAGPA MUTATED	2	1	0	0
NAGPA WILD-TYPE	10	10	8	3

'NAGPA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S1008. Gene #110: 'NAGPA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
NAGPA MUTATED	3	0	0
NAGPA WILD-TYPE	19	8	4

'NAGPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S1009. Gene #110: 'NAGPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
NAGPA MUTATED	3	0	0
NAGPA WILD-TYPE	13	13	4

'NAGPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1010. Gene #110: 'NAGPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
NAGPA MUTATED	2	1	0
NAGPA WILD-TYPE	16	9	5

'PPIG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S1011. Gene #111: 'PPIG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
PPIG MUTATED	3	0	0
PPIG WILD-TYPE	18	17	3

'PPIG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S1012. Gene #111: 'PPIG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
PPIG MUTATED	1	2	0
PPIG WILD-TYPE	18	6	13

'SLITRK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S1013. Gene #112: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
SLITRK5 MUTATED	3	1	0
SLITRK5 WILD-TYPE	18	16	3

'SLITRK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S1014. Gene #112: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
SLITRK5 MUTATED	2	0	2
SLITRK5 WILD-TYPE	17	8	11

'SLITRK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S1015. Gene #112: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
SLITRK5 MUTATED	2	2	0
SLITRK5 WILD-TYPE	14	10	6

'SLITRK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1016. Gene #112: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
SLITRK5 MUTATED	2	2	0
SLITRK5 WILD-TYPE	12	13	5

'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1017. Gene #112: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
SLITRK5 MUTATED	2	1	1	0
SLITRK5 WILD-TYPE	10	10	7	3

'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S1018. Gene #112: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
SLITRK5 MUTATED	4	0	0
SLITRK5 WILD-TYPE	18	8	4

'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1019. Gene #112: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
SLITRK5 MUTATED	2	1	0
SLITRK5 WILD-TYPE	14	12	4

'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1020. Gene #112: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
SLITRK5 MUTATED	2	1	0
SLITRK5 WILD-TYPE	16	9	5

'MBD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1021. Gene #113: 'MBD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
MBD3 MUTATED	3	0	0
MBD3 WILD-TYPE	18	17	3

'MBD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1022. Gene #113: 'MBD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
MBD3 MUTATED	1	1	1
MBD3 WILD-TYPE	18	7	12

'MBD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S1023. Gene #113: 'MBD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
MBD3 MUTATED	0	2	1
MBD3 WILD-TYPE	16	10	5

'MBD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1024. Gene #113: 'MBD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
MBD3 MUTATED	2	0	1
MBD3 WILD-TYPE	12	15	4

'MBD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 1

Table S1025. Gene #113: 'MBD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
MBD3 MUTATED	0	2	0	1
MBD3 WILD-TYPE	12	9	8	2

'MBD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1026. Gene #113: 'MBD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
MBD3 MUTATED	2	1	0
MBD3 WILD-TYPE	20	7	4

'MBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S1027. Gene #113: 'MBD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
MBD3 MUTATED	1	2	0
MBD3 WILD-TYPE	15	11	4

'MBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S1028. Gene #113: 'MBD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
MBD3 MUTATED	1	1	1
MBD3 WILD-TYPE	17	9	4

'FOXP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1029. Gene #114: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
FOXP2 MUTATED	3	2	0
FOXP2 WILD-TYPE	18	15	3

'FOXP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S1030. Gene #114: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
FOXP2 MUTATED	3	1	1
FOXP2 WILD-TYPE	16	7	12

'FOXP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S1031. Gene #114: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
FOXP2 MUTATED	1	0	2	1	0
FOXP2 WILD-TYPE	7	9	5	5	2

'FOXP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S1032. Gene #114: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
FOXP2 MUTATED	0	0	1	2	1
FOXP2 WILD-TYPE	5	9	6	6	2

'FOXP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S1033. Gene #114: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
FOXP2 MUTATED	1	3	0
FOXP2 WILD-TYPE	15	9	6

'FOXP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S1034. Gene #114: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
FOXP2 MUTATED	3	1	0
FOXP2 WILD-TYPE	11	14	5

'FOXP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S1035. Gene #114: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
FOXP2 MUTATED	0	3	1	0
FOXP2 WILD-TYPE	12	8	7	3

'FOXP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1036. Gene #114: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
FOXP2 MUTATED	3	1	0
FOXP2 WILD-TYPE	19	7	4

'FOXP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S1037. Gene #114: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
FOXP2 MUTATED	3	1	0
FOXP2 WILD-TYPE	13	12	4

'FOXP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S1038. Gene #114: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
FOXP2 MUTATED	1	2	1
FOXP2 WILD-TYPE	17	8	4

'NAPSA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1039. Gene #115: 'NAPSA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
NAPSA MUTATED	3	0	0
NAPSA WILD-TYPE	18	17	3

'NAPSA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S1040. Gene #115: 'NAPSA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
NAPSA MUTATED	1	1	1
NAPSA WILD-TYPE	18	7	12

'NAPSA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1041. Gene #115: 'NAPSA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
NAPSA MUTATED	0	1	1	1	0
NAPSA WILD-TYPE	8	8	6	5	2

'NAPSA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S1042. Gene #115: 'NAPSA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
NAPSA MUTATED	0	1	0	1	1
NAPSA WILD-TYPE	5	8	7	7	2

'EIF3C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1043. Gene #116: 'EIF3C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
EIF3C MUTATED	3	0	0
EIF3C WILD-TYPE	18	17	3

'EIF3C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1044. Gene #116: 'EIF3C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
EIF3C MUTATED	2	0	1
EIF3C WILD-TYPE	17	8	12

'EIF3C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1045. Gene #116: 'EIF3C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
EIF3C MUTATED	0	1	1	1	0
EIF3C WILD-TYPE	8	8	6	5	2

'EIF3C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S1046. Gene #116: 'EIF3C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
EIF3C MUTATED	0	1	0	1	1
EIF3C WILD-TYPE	5	8	7	7	2

'EIF3C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1047. Gene #116: 'EIF3C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
EIF3C MUTATED	2	1	0
EIF3C WILD-TYPE	14	11	6

'EIF3C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1048. Gene #116: 'EIF3C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
EIF3C MUTATED	1	2	0
EIF3C WILD-TYPE	13	13	5

'EIF3C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1049. Gene #116: 'EIF3C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
EIF3C MUTATED	1	1	1	0
EIF3C WILD-TYPE	11	10	7	3

'EIF3C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S1050. Gene #116: 'EIF3C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
EIF3C MUTATED	3	0	0
EIF3C WILD-TYPE	19	8	4

'EIF3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1051. Gene #116: 'EIF3C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
EIF3C MUTATED	2	1	0
EIF3C WILD-TYPE	14	12	4

'EIF3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1052. Gene #116: 'EIF3C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
EIF3C MUTATED	2	1	0
EIF3C WILD-TYPE	16	9	5

'GTF2F1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S1053. Gene #117: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
GTF2F1 MUTATED	3	0	0
GTF2F1 WILD-TYPE	18	17	3

'GTF2F1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S1054. Gene #117: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
GTF2F1 MUTATED	1	0	2
GTF2F1 WILD-TYPE	18	8	11

'GTF2F1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1055. Gene #117: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
GTF2F1 MUTATED	1	1	1	0	0
GTF2F1 WILD-TYPE	7	8	6	6	2

'GTF2F1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S1056. Gene #117: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
GTF2F1 MUTATED	1	1	0	1	0
GTF2F1 WILD-TYPE	4	8	7	7	3

'GTF2F1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S1057. Gene #117: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
GTF2F1 MUTATED	1	1	1
GTF2F1 WILD-TYPE	15	11	5

'GTF2F1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1058. Gene #117: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
GTF2F1 MUTATED	2	0	1
GTF2F1 WILD-TYPE	12	15	4

'GTF2F1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S1059. Gene #117: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
GTF2F1 MUTATED	1	1	0	1
GTF2F1 WILD-TYPE	11	10	8	2

'GTF2F1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S1060. Gene #117: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
GTF2F1 MUTATED	2	0	1
GTF2F1 WILD-TYPE	20	8	3

'GTF2F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1061. Gene #117: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
GTF2F1 MUTATED	2	1	0
GTF2F1 WILD-TYPE	14	12	4

'GTF2F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1062. Gene #117: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
GTF2F1 MUTATED	1	1	1
GTF2F1 WILD-TYPE	17	9	4

'CCKAR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S1063. Gene #118: 'CCKAR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
CCKAR MUTATED	3	0	0
CCKAR WILD-TYPE	18	17	3

'CCKAR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S1064. Gene #118: 'CCKAR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
CCKAR MUTATED	1	1	1
CCKAR WILD-TYPE	18	7	12

'MMP14 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1065. Gene #119: 'MMP14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
MMP14 MUTATED	2	1	0
MMP14 WILD-TYPE	19	16	3

'MMP14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1066. Gene #119: 'MMP14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
MMP14 MUTATED	2	0	1
MMP14 WILD-TYPE	17	8	12

'MMP14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S1067. Gene #119: 'MMP14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
MMP14 MUTATED	0	2	1
MMP14 WILD-TYPE	16	10	5

'MMP14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S1068. Gene #119: 'MMP14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
MMP14 MUTATED	2	0	1
MMP14 WILD-TYPE	12	15	4

'MMP14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0929 (Fisher's exact test), Q value = 1

Table S1069. Gene #119: 'MMP14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
MMP14 MUTATED	0	2	0	1
MMP14 WILD-TYPE	12	9	8	2

'MMP14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S1070. Gene #119: 'MMP14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
MMP14 MUTATED	1	1	1
MMP14 WILD-TYPE	21	7	3

'MMP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1071. Gene #119: 'MMP14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
MMP14 MUTATED	2	1	0
MMP14 WILD-TYPE	14	12	4

'MMP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S1072. Gene #119: 'MMP14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
MMP14 MUTATED	0	2	1
MMP14 WILD-TYPE	18	8	4

'ATM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S1073. Gene #120: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
ATM MUTATED	2	0	1
ATM WILD-TYPE	19	17	2

'ATM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1074. Gene #120: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
ATM MUTATED	2	1	0
ATM WILD-TYPE	17	7	13

'ATM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 1

Table S1075. Gene #120: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
ATM MUTATED	0	0	3	0	0
ATM WILD-TYPE	8	9	4	6	2

Figure S31. Get High-res Image Gene #120: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ATM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 1

Table S1076. Gene #120: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
ATM MUTATED	0	0	0	3	0
ATM WILD-TYPE	5	9	7	5	3

Figure S32. Get High-res Image Gene #120: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCDC28B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0482 (Fisher's exact test), Q value = 1

Table S1077. Gene #121: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
CCDC28B MUTATED	0	2	1
CCDC28B WILD-TYPE	21	15	2

Figure S33. Get High-res Image Gene #121: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC28B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S1078. Gene #121: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
CCDC28B MUTATED	3	0	0
CCDC28B WILD-TYPE	16	8	13

'CCDC28B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 1

Table S1079. Gene #121: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
CCDC28B MUTATED	0	0	3	0	0
CCDC28B WILD-TYPE	8	9	4	6	2

Figure S34. Get High-res Image Gene #121: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CCDC28B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0447 (Fisher's exact test), Q value = 1

Table S1080. Gene #121: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
CCDC28B MUTATED	0	0	0	3	0
CCDC28B WILD-TYPE	5	9	7	5	3

Figure S35. Get High-res Image Gene #121: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCDC28B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S1081. Gene #121: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
CCDC28B MUTATED	1	2	0
CCDC28B WILD-TYPE	15	10	6

'CCDC28B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S1082. Gene #121: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
CCDC28B MUTATED	2	1	0
CCDC28B WILD-TYPE	12	14	5

'CCDC28B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S1083. Gene #121: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
CCDC28B MUTATED	1	2	0	0
CCDC28B WILD-TYPE	11	9	8	3

'CCDC28B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1084. Gene #121: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
CCDC28B MUTATED	2	1	0
CCDC28B WILD-TYPE	20	7	4

'CCDC28B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S1085. Gene #121: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
CCDC28B MUTATED	2	0	1
CCDC28B WILD-TYPE	14	13	3

'CCDC28B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S1086. Gene #121: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
CCDC28B MUTATED	1	2	0
CCDC28B WILD-TYPE	17	8	5

'IFFO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S1087. Gene #122: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
IFFO1 MUTATED	1	1	1
IFFO1 WILD-TYPE	20	16	2

'IFFO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S1088. Gene #122: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
IFFO1 MUTATED	3	0	0
IFFO1 WILD-TYPE	16	8	13

'IFFO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1089. Gene #122: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
IFFO1 MUTATED	0	1	2	0	0
IFFO1 WILD-TYPE	8	8	5	6	2

'IFFO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S1090. Gene #122: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
IFFO1 MUTATED	0	1	0	2	0
IFFO1 WILD-TYPE	5	8	7	6	3

'IFFO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1091. Gene #122: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
IFFO1 MUTATED	2	1	0
IFFO1 WILD-TYPE	14	11	6

'IFFO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S1092. Gene #122: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
IFFO1 MUTATED	2	1	0
IFFO1 WILD-TYPE	12	14	5

'IFFO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S1093. Gene #122: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
IFFO1 MUTATED	2	1	0	0
IFFO1 WILD-TYPE	10	10	8	3

'IFFO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S1094. Gene #122: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
IFFO1 MUTATED	3	0	0
IFFO1 WILD-TYPE	19	8	4

'IFFO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S1095. Gene #122: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
IFFO1 MUTATED	3	0	0
IFFO1 WILD-TYPE	13	13	4

'IFFO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S1096. Gene #122: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
IFFO1 MUTATED	1	2	0
IFFO1 WILD-TYPE	17	8	5

'TWISTNB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S1097. Gene #123: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
TWISTNB MUTATED	3	0	0
TWISTNB WILD-TYPE	18	17	3

'TWISTNB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S1098. Gene #123: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
TWISTNB MUTATED	1	0	2
TWISTNB WILD-TYPE	18	8	11

'TWISTNB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1099. Gene #123: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
TWISTNB MUTATED	2	1	0
TWISTNB WILD-TYPE	14	11	6

'TWISTNB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S1100. Gene #123: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
TWISTNB MUTATED	2	1	0
TWISTNB WILD-TYPE	12	14	5

'TWISTNB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1101. Gene #123: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
TWISTNB MUTATED	1	1	1	0
TWISTNB WILD-TYPE	11	10	7	3

'TWISTNB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S1102. Gene #123: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
TWISTNB MUTATED	3	0	0
TWISTNB WILD-TYPE	19	8	4

'TWISTNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1103. Gene #123: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
TWISTNB MUTATED	2	1	0
TWISTNB WILD-TYPE	14	12	4

'TWISTNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1104. Gene #123: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
TWISTNB MUTATED	2	1	0
TWISTNB WILD-TYPE	16	9	5

'RASGRF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1105. Gene #124: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
RASGRF2 MUTATED	2	1	0
RASGRF2 WILD-TYPE	19	16	3

'RASGRF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1106. Gene #124: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
RASGRF2 MUTATED	2	1	0
RASGRF2 WILD-TYPE	17	7	13

'RASGRF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1107. Gene #124: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
RASGRF2 MUTATED	1	1	1	0	0
RASGRF2 WILD-TYPE	7	8	6	6	2

'RASGRF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S1108. Gene #124: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
RASGRF2 MUTATED	1	1	0	1	0
RASGRF2 WILD-TYPE	4	8	7	7	3

'RASGRF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S1109. Gene #124: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
RASGRF2 MUTATED	1	2	0
RASGRF2 WILD-TYPE	15	10	6

'RASGRF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S1110. Gene #124: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
RASGRF2 MUTATED	2	1	0
RASGRF2 WILD-TYPE	12	14	5

'RASGRF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S1111. Gene #124: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
RASGRF2 MUTATED	1	2	0	0
RASGRF2 WILD-TYPE	11	9	8	3

'RASGRF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1112. Gene #124: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
RASGRF2 MUTATED	2	1	0
RASGRF2 WILD-TYPE	20	7	4

'RASGRF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1113. Gene #124: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
RASGRF2 MUTATED	2	1	0
RASGRF2 WILD-TYPE	14	12	4

'RASGRF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S1114. Gene #124: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
RASGRF2 MUTATED	1	2	0
RASGRF2 WILD-TYPE	17	8	5

'SPAG9 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1115. Gene #125: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
SPAG9 MUTATED	2	1	0
SPAG9 WILD-TYPE	19	16	3

'SPAG9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1116. Gene #125: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
SPAG9 MUTATED	2	0	1
SPAG9 WILD-TYPE	17	8	12

'SPAG9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1117. Gene #125: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
SPAG9 MUTATED	2	1	0
SPAG9 WILD-TYPE	14	11	6

'SPAG9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1118. Gene #125: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
SPAG9 MUTATED	1	2	0
SPAG9 WILD-TYPE	13	13	5

'SPAG9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1119. Gene #125: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
SPAG9 MUTATED	1	1	1	0
SPAG9 WILD-TYPE	11	10	7	3

'SPAG9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S1120. Gene #125: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
SPAG9 MUTATED	3	0	0
SPAG9 WILD-TYPE	19	8	4

'SPAG9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1121. Gene #125: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
SPAG9 MUTATED	2	1	0
SPAG9 WILD-TYPE	14	12	4

'SPAG9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1122. Gene #125: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
SPAG9 MUTATED	2	1	0
SPAG9 WILD-TYPE	16	9	5

'SMCR7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1123. Gene #126: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
SMCR7 MUTATED	2	1	0
SMCR7 WILD-TYPE	19	16	3

'SMCR7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1124. Gene #126: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
SMCR7 MUTATED	2	0	1
SMCR7 WILD-TYPE	17	8	12

'SMCR7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S1125. Gene #126: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
SMCR7 MUTATED	0	1	2	0	0
SMCR7 WILD-TYPE	8	8	5	6	2

'SMCR7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S1126. Gene #126: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
SMCR7 MUTATED	0	1	0	2	0
SMCR7 WILD-TYPE	5	8	7	6	3

'SMCR7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S1127. Gene #126: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
SMCR7 MUTATED	1	2	0
SMCR7 WILD-TYPE	15	10	6

'SMCR7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S1128. Gene #126: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
SMCR7 MUTATED	2	1	0
SMCR7 WILD-TYPE	12	14	5

'SMCR7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S1129. Gene #126: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
SMCR7 MUTATED	0	2	1	0
SMCR7 WILD-TYPE	12	9	7	3

'SMCR7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1130. Gene #126: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
SMCR7 MUTATED	2	1	0
SMCR7 WILD-TYPE	20	7	4

'SMCR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S1131. Gene #126: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
SMCR7 MUTATED	1	1	1
SMCR7 WILD-TYPE	15	12	3

'SMCR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S1132. Gene #126: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
SMCR7 MUTATED	1	2	0
SMCR7 WILD-TYPE	17	8	5

'PSAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S1133. Gene #127: 'PSAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
PSAT1 MUTATED	1	3	0
PSAT1 WILD-TYPE	20	14	3

'PSAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S1134. Gene #127: 'PSAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
PSAT1 MUTATED	3	1	0
PSAT1 WILD-TYPE	16	7	13

'PSAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S1135. Gene #127: 'PSAT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
PSAT1 MUTATED	0	0	1	2	0
PSAT1 WILD-TYPE	8	9	6	4	2

'PSAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S1136. Gene #127: 'PSAT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
PSAT1 MUTATED	0	0	1	1	1
PSAT1 WILD-TYPE	5	9	6	7	2

'PSAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1137. Gene #127: 'PSAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
PSAT1 MUTATED	2	1	0
PSAT1 WILD-TYPE	14	11	6

'PSAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1138. Gene #127: 'PSAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
PSAT1 MUTATED	1	2	0
PSAT1 WILD-TYPE	13	13	5

'PSAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1139. Gene #127: 'PSAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
PSAT1 MUTATED	2	1	0	0
PSAT1 WILD-TYPE	10	10	8	3

'PSAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1140. Gene #127: 'PSAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
PSAT1 MUTATED	2	1	0
PSAT1 WILD-TYPE	20	7	4

'PDILT MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1141. Gene #128: 'PDILT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
PDILT MUTATED	2	1	0
PDILT WILD-TYPE	19	16	3

'PDILT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1142. Gene #128: 'PDILT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
PDILT MUTATED	2	0	1
PDILT WILD-TYPE	17	8	12

'PDILT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1143. Gene #128: 'PDILT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
PDILT MUTATED	1	1	1	0	0
PDILT WILD-TYPE	7	8	6	6	2

'PDILT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S1144. Gene #128: 'PDILT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
PDILT MUTATED	1	1	0	1	0
PDILT WILD-TYPE	4	8	7	7	3

'PDILT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1145. Gene #128: 'PDILT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
PDILT MUTATED	2	1	0
PDILT WILD-TYPE	14	11	6

'PDILT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1146. Gene #128: 'PDILT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
PDILT MUTATED	1	2	0
PDILT WILD-TYPE	13	13	5

'PDILT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1147. Gene #128: 'PDILT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
PDILT MUTATED	1	1	1	0
PDILT WILD-TYPE	11	10	7	3

'PDILT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S1148. Gene #128: 'PDILT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
PDILT MUTATED	3	0	0
PDILT WILD-TYPE	19	8	4

'PDILT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1149. Gene #128: 'PDILT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
PDILT MUTATED	2	1	0
PDILT WILD-TYPE	14	12	4

'PDILT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1150. Gene #128: 'PDILT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
PDILT MUTATED	2	1	0
PDILT WILD-TYPE	16	9	5

'CCDC8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1151. Gene #129: 'CCDC8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
CCDC8 MUTATED	3	0	0
CCDC8 WILD-TYPE	18	17	3

'CCDC8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S1152. Gene #129: 'CCDC8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
CCDC8 MUTATED	1	0	2
CCDC8 WILD-TYPE	18	8	11

'CCDC8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1153. Gene #129: 'CCDC8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
CCDC8 MUTATED	0	1	1	1	0
CCDC8 WILD-TYPE	8	8	6	5	2

'CCDC8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S1154. Gene #129: 'CCDC8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
CCDC8 MUTATED	0	1	0	1	1
CCDC8 WILD-TYPE	5	8	7	7	2

'CCDC8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1155. Gene #129: 'CCDC8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
CCDC8 MUTATED	2	1	0
CCDC8 WILD-TYPE	14	11	6

'CCDC8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1156. Gene #129: 'CCDC8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
CCDC8 MUTATED	1	2	0
CCDC8 WILD-TYPE	13	13	5

'CCDC8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S1157. Gene #129: 'CCDC8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
CCDC8 MUTATED	0	1	2	0
CCDC8 WILD-TYPE	12	10	6	3

'CCDC8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S1158. Gene #129: 'CCDC8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
CCDC8 MUTATED	3	0	0
CCDC8 WILD-TYPE	19	8	4

'CCDC8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1159. Gene #129: 'CCDC8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
CCDC8 MUTATED	2	1	0
CCDC8 WILD-TYPE	14	12	4

'CCDC8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1160. Gene #129: 'CCDC8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
CCDC8 MUTATED	2	1	0
CCDC8 WILD-TYPE	16	9	5

'HIST1H2BK MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1161. Gene #130: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
HIST1H2BK MUTATED	2	1	0
HIST1H2BK WILD-TYPE	19	16	3

'HIST1H2BK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1162. Gene #130: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
HIST1H2BK MUTATED	2	0	1
HIST1H2BK WILD-TYPE	17	8	12

'HIST1H2BK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S1163. Gene #130: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
HIST1H2BK MUTATED	1	1	1
HIST1H2BK WILD-TYPE	15	11	5

'HIST1H2BK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S1164. Gene #130: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
HIST1H2BK MUTATED	1	1	1
HIST1H2BK WILD-TYPE	13	14	4

'HIST1H2BK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1165. Gene #130: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
HIST1H2BK MUTATED	1	1	0	1
HIST1H2BK WILD-TYPE	11	10	8	2

'HIST1H2BK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S1166. Gene #130: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
HIST1H2BK MUTATED	1	1	1
HIST1H2BK WILD-TYPE	21	7	3

'HIST1H2BK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S1167. Gene #130: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
HIST1H2BK MUTATED	1	1	1
HIST1H2BK WILD-TYPE	15	12	3

'HIST1H2BK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S1168. Gene #130: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
HIST1H2BK MUTATED	1	1	1
HIST1H2BK WILD-TYPE	17	9	4

'METAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S1169. Gene #131: 'METAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
METAP1 MUTATED	3	0	0
METAP1 WILD-TYPE	18	17	3

'METAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1170. Gene #131: 'METAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
METAP1 MUTATED	2	0	1
METAP1 WILD-TYPE	17	8	12

'METAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1171. Gene #131: 'METAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
METAP1 MUTATED	0	1	1	1	0
METAP1 WILD-TYPE	8	8	6	5	2

'METAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1172. Gene #131: 'METAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
METAP1 MUTATED	0	1	1	1	0
METAP1 WILD-TYPE	5	8	6	7	3

'METAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S1173. Gene #131: 'METAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
METAP1 MUTATED	1	1	1
METAP1 WILD-TYPE	15	11	5

'METAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S1174. Gene #131: 'METAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
METAP1 MUTATED	1	1	1
METAP1 WILD-TYPE	13	14	4

'METAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1175. Gene #131: 'METAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
METAP1 MUTATED	1	1	1	0
METAP1 WILD-TYPE	11	10	7	3

'METAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1176. Gene #131: 'METAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
METAP1 MUTATED	2	0	1
METAP1 WILD-TYPE	20	8	3

'METAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1177. Gene #131: 'METAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
METAP1 MUTATED	2	1	0
METAP1 WILD-TYPE	14	12	4

'METAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S1178. Gene #131: 'METAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
METAP1 MUTATED	1	1	1
METAP1 WILD-TYPE	17	9	4

'SCRIB MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1179. Gene #132: 'SCRIB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
SCRIB MUTATED	2	1	0
SCRIB WILD-TYPE	19	16	3

'SCRIB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1180. Gene #132: 'SCRIB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
SCRIB MUTATED	2	0	1
SCRIB WILD-TYPE	17	8	12

'SCRIB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S1181. Gene #132: 'SCRIB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
SCRIB MUTATED	0	2	1
SCRIB WILD-TYPE	16	10	5

'SCRIB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1182. Gene #132: 'SCRIB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
SCRIB MUTATED	2	0	1
SCRIB WILD-TYPE	12	15	4

'SCRIB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 1

Table S1183. Gene #132: 'SCRIB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
SCRIB MUTATED	0	2	0	1
SCRIB WILD-TYPE	12	9	8	2

'SCRIB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S1184. Gene #132: 'SCRIB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
SCRIB MUTATED	1	1	1
SCRIB WILD-TYPE	21	7	3

'SCRIB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S1185. Gene #132: 'SCRIB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
SCRIB MUTATED	1	1	1
SCRIB WILD-TYPE	15	12	3

'SCRIB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S1186. Gene #132: 'SCRIB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
SCRIB MUTATED	0	2	1
SCRIB WILD-TYPE	18	8	4

'STAU1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1187. Gene #133: 'STAU1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
STAU1 MUTATED	2	1	0
STAU1 WILD-TYPE	19	16	3

'STAU1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1188. Gene #133: 'STAU1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
STAU1 MUTATED	2	0	1
STAU1 WILD-TYPE	17	8	12

'STAU1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1189. Gene #133: 'STAU1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
STAU1 MUTATED	1	0	1	0	1
STAU1 WILD-TYPE	7	9	6	6	1

'STAU1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S1190. Gene #133: 'STAU1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
STAU1 MUTATED	1	0	1	1	0
STAU1 WILD-TYPE	4	9	6	7	3

'STAU1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S1191. Gene #133: 'STAU1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
STAU1 MUTATED	0	2	1
STAU1 WILD-TYPE	16	10	5

'STAU1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1192. Gene #133: 'STAU1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
STAU1 MUTATED	2	0	1
STAU1 WILD-TYPE	12	15	4

'STAU1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0936 (Fisher's exact test), Q value = 1

Table S1193. Gene #133: 'STAU1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
STAU1 MUTATED	0	2	0	1
STAU1 WILD-TYPE	12	9	8	2

'STAU1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1194. Gene #133: 'STAU1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
STAU1 MUTATED	3	0	0
STAU1 WILD-TYPE	19	8	4

'STAU1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S1195. Gene #133: 'STAU1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
STAU1 MUTATED	1	1	1
STAU1 WILD-TYPE	15	12	3

'STAU1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1196. Gene #133: 'STAU1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
STAU1 MUTATED	2	1	0
STAU1 WILD-TYPE	16	9	5

'GOLGA6B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S1197. Gene #134: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
GOLGA6B MUTATED	1	1	1
GOLGA6B WILD-TYPE	20	16	2

'GOLGA6B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S1198. Gene #134: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
GOLGA6B MUTATED	3	0	0
GOLGA6B WILD-TYPE	16	8	13

'GOLGA6B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 1

Table S1199. Gene #134: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
GOLGA6B MUTATED	0	0	3	0	0
GOLGA6B WILD-TYPE	8	9	4	6	2

Figure S36. Get High-res Image Gene #134: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GOLGA6B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0451 (Fisher's exact test), Q value = 1

Table S1200. Gene #134: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
GOLGA6B MUTATED	0	0	0	3	0
GOLGA6B WILD-TYPE	5	9	7	5	3

Figure S37. Get High-res Image Gene #134: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GOLGA6B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S1201. Gene #134: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
GOLGA6B MUTATED	1	2	0
GOLGA6B WILD-TYPE	15	10	6

'GOLGA6B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S1202. Gene #134: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
GOLGA6B MUTATED	2	1	0
GOLGA6B WILD-TYPE	12	14	5

'GOLGA6B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S1203. Gene #134: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
GOLGA6B MUTATED	1	2	0	0
GOLGA6B WILD-TYPE	11	9	8	3

'GOLGA6B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1204. Gene #134: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
GOLGA6B MUTATED	2	1	0
GOLGA6B WILD-TYPE	20	7	4

'GOLGA6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S1205. Gene #134: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
GOLGA6B MUTATED	3	0	0
GOLGA6B WILD-TYPE	13	13	4

'GOLGA6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S1206. Gene #134: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
GOLGA6B MUTATED	1	2	0
GOLGA6B WILD-TYPE	17	8	5

'IRS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1207. Gene #135: 'IRS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
IRS4 MUTATED	2	2	0
IRS4 WILD-TYPE	19	15	3

'IRS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S1208. Gene #135: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
IRS4 MUTATED	3	0	1
IRS4 WILD-TYPE	16	8	12

'IRS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S1209. Gene #135: 'IRS4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
IRS4 MUTATED	1	2	1
IRS4 WILD-TYPE	15	10	5

'IRS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S1210. Gene #135: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
IRS4 MUTATED	2	1	1
IRS4 WILD-TYPE	12	14	4

'IRS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1211. Gene #135: 'IRS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
IRS4 MUTATED	1	2	0	1
IRS4 WILD-TYPE	11	9	8	2

'IRS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1212. Gene #135: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
IRS4 MUTATED	2	1	1
IRS4 WILD-TYPE	20	7	3

'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S1213. Gene #135: 'IRS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
IRS4 MUTATED	1	1	1
IRS4 WILD-TYPE	15	12	3

'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S1214. Gene #135: 'IRS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
IRS4 MUTATED	0	2	1
IRS4 WILD-TYPE	18	8	4

'PDZD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1215. Gene #136: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
PDZD2 MUTATED	2	2	0
PDZD2 WILD-TYPE	19	15	3

'PDZD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1216. Gene #136: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
PDZD2 MUTATED	2	1	1
PDZD2 WILD-TYPE	17	7	12

'PDZD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S1217. Gene #136: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
PDZD2 MUTATED	3	0	1	0	0
PDZD2 WILD-TYPE	5	9	6	6	2

'PDZD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S1218. Gene #136: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
PDZD2 MUTATED	2	0	1	1	0
PDZD2 WILD-TYPE	3	9	6	7	3

'PDZD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S1219. Gene #136: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
PDZD2 MUTATED	1	2	1
PDZD2 WILD-TYPE	15	10	5

'PDZD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S1220. Gene #136: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
PDZD2 MUTATED	2	1	1
PDZD2 WILD-TYPE	12	14	4

'PDZD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1221. Gene #136: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
PDZD2 MUTATED	1	2	0	1
PDZD2 WILD-TYPE	11	9	8	2

'PDZD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S1222. Gene #136: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
PDZD2 MUTATED	2	1	1
PDZD2 WILD-TYPE	20	7	3

'PDZD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1223. Gene #136: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
PDZD2 MUTATED	2	2	0
PDZD2 WILD-TYPE	14	11	4

'PDZD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S1224. Gene #136: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
PDZD2 MUTATED	1	2	1
PDZD2 WILD-TYPE	17	8	4

'CCDC135 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S1225. Gene #137: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
CCDC135 MUTATED	2	0	1
CCDC135 WILD-TYPE	19	17	2

'CCDC135 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1226. Gene #137: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
CCDC135 MUTATED	2	0	1
CCDC135 WILD-TYPE	17	8	12

'CCDC135 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S1227. Gene #137: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
CCDC135 MUTATED	1	2	0
CCDC135 WILD-TYPE	15	10	6

'CCDC135 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1228. Gene #137: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
CCDC135 MUTATED	1	2	0
CCDC135 WILD-TYPE	13	13	5

'CCDC135 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1229. Gene #137: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
CCDC135 MUTATED	1	1	1	0
CCDC135 WILD-TYPE	11	10	7	3

'CCDC135 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S1230. Gene #137: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
CCDC135 MUTATED	3	0	0
CCDC135 WILD-TYPE	19	8	4

'CCDC135 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1231. Gene #137: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
CCDC135 MUTATED	2	1	0
CCDC135 WILD-TYPE	14	12	4

'CCDC135 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1232. Gene #137: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
CCDC135 MUTATED	2	1	0
CCDC135 WILD-TYPE	16	9	5

'CEP72 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1233. Gene #138: 'CEP72 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
CEP72 MUTATED	2	1	0
CEP72 WILD-TYPE	19	16	3

'CEP72 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1234. Gene #138: 'CEP72 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
CEP72 MUTATED	2	0	1
CEP72 WILD-TYPE	17	8	12

'CEP72 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S1235. Gene #138: 'CEP72 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
CEP72 MUTATED	0	2	1	0	0
CEP72 WILD-TYPE	8	7	6	6	2

'CEP72 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S1236. Gene #138: 'CEP72 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
CEP72 MUTATED	0	2	0	1	0
CEP72 WILD-TYPE	5	7	7	7	3

'CEP72 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1237. Gene #138: 'CEP72 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
CEP72 MUTATED	2	1	0
CEP72 WILD-TYPE	14	11	6

'CEP72 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S1238. Gene #138: 'CEP72 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
CEP72 MUTATED	2	1	0
CEP72 WILD-TYPE	12	14	5

'CEP72 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1239. Gene #138: 'CEP72 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
CEP72 MUTATED	1	1	1	0
CEP72 WILD-TYPE	11	10	7	3

'CEP72 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S1240. Gene #138: 'CEP72 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
CEP72 MUTATED	3	0	0
CEP72 WILD-TYPE	19	8	4

'CEP72 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1241. Gene #138: 'CEP72 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
CEP72 MUTATED	2	1	0
CEP72 WILD-TYPE	14	12	4

'CEP72 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S1242. Gene #138: 'CEP72 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
CEP72 MUTATED	1	2	0
CEP72 WILD-TYPE	17	8	5

'SMARCA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S1243. Gene #139: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
SMARCA2 MUTATED	3	0	0
SMARCA2 WILD-TYPE	18	17	3

'SMARCA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S1244. Gene #139: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
SMARCA2 MUTATED	1	0	2
SMARCA2 WILD-TYPE	18	8	11

'SMARCA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S1245. Gene #139: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
SMARCA2 MUTATED	1	0	1	1	0
SMARCA2 WILD-TYPE	7	9	6	5	2

'SMARCA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S1246. Gene #139: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
SMARCA2 MUTATED	1	0	1	1	0
SMARCA2 WILD-TYPE	4	9	6	7	3

'SMARCA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 1

Table S1247. Gene #139: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
SMARCA2 MUTATED	0	1	2
SMARCA2 WILD-TYPE	16	11	4

Figure S38. Get High-res Image Gene #139: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SMARCA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 1

Table S1248. Gene #139: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
SMARCA2 MUTATED	1	0	2
SMARCA2 WILD-TYPE	13	15	3

Figure S39. Get High-res Image Gene #139: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SMARCA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S1249. Gene #139: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
SMARCA2 MUTATED	0	1	2	0
SMARCA2 WILD-TYPE	12	10	6	3

'SMARCA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0584 (Fisher's exact test), Q value = 1

Table S1250. Gene #139: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
SMARCA2 MUTATED	1	0	2
SMARCA2 WILD-TYPE	21	8	2

'SMARCA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S1251. Gene #139: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
SMARCA2 MUTATED	1	2	0
SMARCA2 WILD-TYPE	15	11	4

'SMARCA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0196 (Fisher's exact test), Q value = 1

Table S1252. Gene #139: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
SMARCA2 MUTATED	0	1	2
SMARCA2 WILD-TYPE	18	9	3

Figure S40. Get High-res Image Gene #139: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1253. Gene #140: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
UBXN6 MUTATED	2	1	0
UBXN6 WILD-TYPE	19	16	3

'UBXN6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1254. Gene #140: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
UBXN6 MUTATED	2	0	1
UBXN6 WILD-TYPE	17	8	12

'UBXN6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1255. Gene #140: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
UBXN6 MUTATED	2	1	0
UBXN6 WILD-TYPE	14	11	6

'UBXN6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S1256. Gene #140: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
UBXN6 MUTATED	2	1	0
UBXN6 WILD-TYPE	12	14	5

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S1257. Gene #140: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
UBXN6 MUTATED	2	1	0	0
UBXN6 WILD-TYPE	10	10	8	3

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S1258. Gene #140: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
UBXN6 MUTATED	3	0	0
UBXN6 WILD-TYPE	19	8	4

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S1259. Gene #140: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
UBXN6 MUTATED	3	0	0
UBXN6 WILD-TYPE	13	13	4

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1260. Gene #140: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
UBXN6 MUTATED	2	1	0
UBXN6 WILD-TYPE	16	9	5

'YIPF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S1261. Gene #141: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
YIPF2 MUTATED	1	2	0
YIPF2 WILD-TYPE	20	15	3

'YIPF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S1262. Gene #141: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
YIPF2 MUTATED	3	0	0
YIPF2 WILD-TYPE	16	8	13

'YIPF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S1263. Gene #141: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
YIPF2 MUTATED	1	0	2	0	0
YIPF2 WILD-TYPE	7	9	5	6	2

'YIPF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S1264. Gene #141: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
YIPF2 MUTATED	0	0	1	2	0
YIPF2 WILD-TYPE	5	9	6	6	3

'YIPF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0714 (Fisher's exact test), Q value = 1

Table S1265. Gene #141: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
YIPF2 MUTATED	0	3	0
YIPF2 WILD-TYPE	16	9	6

'YIPF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S1266. Gene #141: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
YIPF2 MUTATED	3	0	0
YIPF2 WILD-TYPE	11	15	5

'YIPF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S1267. Gene #141: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
YIPF2 MUTATED	1	2	0	0
YIPF2 WILD-TYPE	11	9	8	3

'YIPF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1268. Gene #141: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
YIPF2 MUTATED	2	1	0
YIPF2 WILD-TYPE	20	7	4

'YIPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S1269. Gene #141: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
YIPF2 MUTATED	2	0	1
YIPF2 WILD-TYPE	14	13	3

'YIPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S1270. Gene #141: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
YIPF2 MUTATED	1	2	0
YIPF2 WILD-TYPE	17	8	5

'GNAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S1271. Gene #142: 'GNAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
GNAS MUTATED	5	1	1
GNAS WILD-TYPE	16	16	2

'GNAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S1272. Gene #142: 'GNAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
GNAS MUTATED	5	0	2
GNAS WILD-TYPE	14	8	11

'GNAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1273. Gene #142: 'GNAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
GNAS MUTATED	0	2	2	1	1
GNAS WILD-TYPE	8	7	5	5	1

'GNAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S1274. Gene #142: 'GNAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
GNAS MUTATED	0	2	1	2	1
GNAS WILD-TYPE	5	7	6	6	2

'GNAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S1275. Gene #142: 'GNAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
GNAS MUTATED	5	1	1
GNAS WILD-TYPE	11	11	5

'GNAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S1276. Gene #142: 'GNAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
GNAS MUTATED	2	4	1
GNAS WILD-TYPE	12	11	4

'GNAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 1

Table S1277. Gene #142: 'GNAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
GNAS MUTATED	5	1	0	1
GNAS WILD-TYPE	7	10	8	2

'GNAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S1278. Gene #142: 'GNAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
GNAS MUTATED	7	0	0
GNAS WILD-TYPE	15	8	4

'GNAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S1279. Gene #142: 'GNAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
GNAS MUTATED	6	1	0
GNAS WILD-TYPE	10	12	4

'GNAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S1280. Gene #142: 'GNAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
GNAS MUTATED	6	1	0
GNAS WILD-TYPE	12	9	5

'TGFBR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S1281. Gene #143: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
TGFBR2 MUTATED	3	0	0
TGFBR2 WILD-TYPE	18	17	3

'TGFBR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S1282. Gene #143: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
TGFBR2 MUTATED	1	0	2
TGFBR2 WILD-TYPE	18	8	11

'TGFBR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S1283. Gene #143: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
TGFBR2 MUTATED	0	1	1	0	1
TGFBR2 WILD-TYPE	8	8	6	6	1

'TGFBR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1284. Gene #143: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
TGFBR2 MUTATED	0	1	1	1	0
TGFBR2 WILD-TYPE	5	8	6	7	3

'TGFBR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S1285. Gene #143: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
TGFBR2 MUTATED	1	1	1
TGFBR2 WILD-TYPE	15	11	5

'TGFBR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S1286. Gene #143: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
TGFBR2 MUTATED	1	1	1
TGFBR2 WILD-TYPE	13	14	4

'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S1287. Gene #143: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
TGFBR2 MUTATED	0	1	1	1
TGFBR2 WILD-TYPE	12	10	7	2

'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S1288. Gene #143: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
TGFBR2 MUTATED	3	0	0
TGFBR2 WILD-TYPE	19	8	4

'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1289. Gene #143: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
TGFBR2 MUTATED	2	1	0
TGFBR2 WILD-TYPE	14	12	4

'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1290. Gene #143: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
TGFBR2 MUTATED	2	1	0
TGFBR2 WILD-TYPE	16	9	5

'PARVB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S1291. Gene #144: 'PARVB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
PARVB MUTATED	1	2	0
PARVB WILD-TYPE	20	15	3

'PTPN21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S1292. Gene #145: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
PTPN21 MUTATED	1	1	1
PTPN21 WILD-TYPE	20	16	2

'PTPN21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S1293. Gene #145: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
PTPN21 MUTATED	3	0	0
PTPN21 WILD-TYPE	16	8	13

'PTPN21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0711 (Fisher's exact test), Q value = 1

Table S1294. Gene #145: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
PTPN21 MUTATED	0	3	0
PTPN21 WILD-TYPE	16	9	6

'PTPN21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S1295. Gene #145: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
PTPN21 MUTATED	3	0	0
PTPN21 WILD-TYPE	11	15	5

'PTPN21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0927 (Fisher's exact test), Q value = 1

Table S1296. Gene #145: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
PTPN21 MUTATED	0	3	0	0
PTPN21 WILD-TYPE	12	8	8	3

'PTPN21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1297. Gene #145: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
PTPN21 MUTATED	2	1	0
PTPN21 WILD-TYPE	20	7	4

'PTPN21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0324 (Fisher's exact test), Q value = 1

Table S1298. Gene #145: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
PTPN21 MUTATED	1	0	2
PTPN21 WILD-TYPE	15	13	2

Figure S41. Get High-res Image Gene #145: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PTPN21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S1299. Gene #145: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
PTPN21 MUTATED	1	2	0
PTPN21 WILD-TYPE	17	8	5

'TSC22D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S1300. Gene #146: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
TSC22D1 MUTATED	1	1	1
TSC22D1 WILD-TYPE	20	16	2

'TSC22D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S1301. Gene #146: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
TSC22D1 MUTATED	3	0	0
TSC22D1 WILD-TYPE	16	8	13

'TSC22D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 1

Table S1302. Gene #146: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
TSC22D1 MUTATED	0	0	3	0	0
TSC22D1 WILD-TYPE	8	9	4	6	2

Figure S42. Get High-res Image Gene #146: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TSC22D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0451 (Fisher's exact test), Q value = 1

Table S1303. Gene #146: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
TSC22D1 MUTATED	0	0	0	3	0
TSC22D1 WILD-TYPE	5	9	7	5	3

Figure S43. Get High-res Image Gene #146: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TSC22D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1304. Gene #146: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
TSC22D1 MUTATED	1	2	0
TSC22D1 WILD-TYPE	15	10	6

'TSC22D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S1305. Gene #146: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
TSC22D1 MUTATED	2	1	0
TSC22D1 WILD-TYPE	12	14	5

'TSC22D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S1306. Gene #146: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
TSC22D1 MUTATED	1	2	0	0
TSC22D1 WILD-TYPE	11	9	8	3

'TSC22D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1307. Gene #146: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
TSC22D1 MUTATED	2	1	0
TSC22D1 WILD-TYPE	20	7	4

'TSC22D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S1308. Gene #146: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
TSC22D1 MUTATED	3	0	0
TSC22D1 WILD-TYPE	13	13	4

'TSC22D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S1309. Gene #146: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
TSC22D1 MUTATED	1	2	0
TSC22D1 WILD-TYPE	17	8	5

'ZNF184 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S1310. Gene #147: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
ZNF184 MUTATED	1	2	1
ZNF184 WILD-TYPE	20	15	2

'ZNF184 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S1311. Gene #147: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
ZNF184 MUTATED	4	0	0
ZNF184 WILD-TYPE	15	8	13

'ZNF184 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S1312. Gene #147: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
ZNF184 MUTATED	1	3	0
ZNF184 WILD-TYPE	15	9	6

'ZNF184 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S1313. Gene #147: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
ZNF184 MUTATED	3	1	0
ZNF184 WILD-TYPE	11	14	5

'ZNF184 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S1314. Gene #147: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
ZNF184 MUTATED	2	2	0	0
ZNF184 WILD-TYPE	10	9	8	3

'ZNF184 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1315. Gene #147: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
ZNF184 MUTATED	3	1	0
ZNF184 WILD-TYPE	19	7	4

'ZNF184 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 1

Table S1316. Gene #147: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
ZNF184 MUTATED	2	0	2
ZNF184 WILD-TYPE	14	13	2

Figure S44. Get High-res Image Gene #147: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZNF184 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S1317. Gene #147: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
ZNF184 MUTATED	2	2	0
ZNF184 WILD-TYPE	16	8	5

'ANK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S1318. Gene #148: 'ANK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	21	17	3
ANK3 MUTATED	4	1	0
ANK3 WILD-TYPE	17	16	3

'ANK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1319. Gene #148: 'ANK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	19	8	13
ANK3 MUTATED	2	1	2
ANK3 WILD-TYPE	17	7	11

'ANK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S1320. Gene #148: 'ANK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	8	9	7	6	2
ANK3 MUTATED	0	1	2	0	0
ANK3 WILD-TYPE	8	8	5	6	2

'ANK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S1321. Gene #148: 'ANK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	5	9	7	8	3
ANK3 MUTATED	0	1	0	2	0
ANK3 WILD-TYPE	5	8	7	6	3

'ANK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S1322. Gene #148: 'ANK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	12	6
ANK3 MUTATED	3	1	0
ANK3 WILD-TYPE	13	11	6

'ANK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S1323. Gene #148: 'ANK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	14	15	5
ANK3 MUTATED	1	3	0
ANK3 WILD-TYPE	13	12	5

'ANK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S1324. Gene #148: 'ANK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	11	8	3
ANK3 MUTATED	1	1	2	0
ANK3 WILD-TYPE	11	10	6	3

'ANK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S1325. Gene #148: 'ANK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	22	8	4
ANK3 MUTATED	4	0	0
ANK3 WILD-TYPE	18	8	4

'ANK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1326. Gene #148: 'ANK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	16	13	4
ANK3 MUTATED	2	1	0
ANK3 WILD-TYPE	14	12	4

'ANK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1327. Gene #148: 'ANK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	18	10	5
ANK3 MUTATED	2	1	0
ANK3 WILD-TYPE	16	9	5

Methods & Data

Input

Mutation data file = transformed.cor.cli.txt
Molecular subtypes file = PAAD-TP.transferedmergedcluster.txt
Number of patients = 41
Number of significantly mutated genes = 148
Number of Molecular subtypes = 10
Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References

[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)

[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)

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