Clinical Features Time to Death AGE PATHOLOGY.T.STAGE PATHOLOGY.N.STAGE HISTOLOGICAL.TYPE COMPLETENESS.OF.RESECTION NUMBER.OF.LYMPH.NODES GLEASON_SCORE_COMBINED GLEASON_SCORE_PRIMARY GLEASON_SCORE_SECONDARY GLEASON_SCORE PSA_RESULT_PREOP PSA_VALUE RACE nCNV (%) nWild-Type logrank test_P logrank test_Q Wilcoxon-test_P Wilcoxon-test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Wilcoxon-test_P Wilcoxon-test_Q Wilcoxon-test_P Wilcoxon-test_Q Wilcoxon-test_P Wilcoxon-test_Q Wilcoxon-test_P Wilcoxon-test_Q Wilcoxon-test_P Wilcoxon-test_Q Wilcoxon-test_P Wilcoxon-test_Q Wilcoxon-test_P Wilcoxon-test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 11 (3%) 352 0.71044 1 0.17689 1 0.00147 1 0.64033 1 1 1 0.66907 1 0.62723 1 0.025042 1 0.032914 1 0.25938 1 0.002535 1 0.010237 1 0.82875 1 1 1 1q gain 17 (5%) 346 0.59016 1 0.498 1 0.0086199 1 0.7109 1 0.46972 1 0.71685 1 0.55904 1 0.021889 1 0.0039312 1 0.65495 1 0.0050068 1 0.026077 1 0.60419 1 1 1 2p gain 7 (2%) 356 0.70274 1 0.35384 1 1 1 1 1 1 1 0.511 1 0.41159 1 0.18831 1 0.13938 1 0.98044 1 0.36804 1 0.41051 1 0.025015 1 NA NA 2q gain 5 (1%) 358 0.77719 1 0.26731 1 1 1 1 1 1 1 0.41899 1 0.4786 1 0.17344 1 0.06298 1 0.8207 1 0.52057 1 0.58956 1 0.082031 1 NA NA 3p gain 26 (7%) 337 0.44526 1 0.0072095 1 0.01179 1 0.37698 1 1 1 0.30448 1 0.31298 1 0.027821 1 0.0062778 1 0.61847 1 3.8226e-05 0.0384 0.59565 1 0.30445 1 0.52713 1 3q gain 35 (10%) 328 0.14152 1 0.025416 1 0.00061999 0.603 0.28876 1 1 1 0.23998 1 0.1714 1 0.018074 1 0.00048508 0.472 0.9681 1 8.6981e-05 0.0865 0.066504 1 0.15741 1 0.63454 1 4p gain 6 (2%) 357 0.70747 1 0.092421 1 0.45343 1 0.59886 1 1 1 0.74499 1 0.31204 1 0.83229 1 0.7535 1 0.55325 1 0.74348 1 0.2736 1 0.37998 1 1 1 4q gain 5 (1%) 358 0.71971 1 0.04562 1 0.4425 1 1 1 1 1 0.6968 1 0.35725 1 0.64658 1 0.48903 1 0.92317 1 0.23214 1 0.20297 1 0.18495 1 NA NA 5p gain 15 (4%) 348 0.62727 1 0.010489 1 0.00126 1 0.035627 1 0.4277 1 0.15018 1 0.0074835 1 0.046901 1 0.0064612 1 0.97184 1 0.00031006 0.305 0.084986 1 0.063259 1 NA NA 5q gain 8 (2%) 355 0.72184 1 0.002144 1 0.03941 1 0.091661 1 1 1 0.098189 1 0.035137 1 0.28922 1 0.35697 1 0.5364 1 0.023102 1 0.11819 1 0.0021334 1 NA NA 6p gain 5 (1%) 358 0.089295 1 0.60142 1 0.4428 1 0.15135 1 0.16755 1 0.31092 1 0.10832 1 0.046932 1 0.027436 1 0.6042 1 0.234 1 0.50491 1 0.42638 1 NA NA 6q gain 4 (1%) 359 0.68559 1 0.12124 1 0.66101 1 0.46317 1 0.13627 1 0.41652 1 0.50824 1 0.078001 1 0.038152 1 0.66473 1 0.35012 1 0.90603 1 0.90167 1 NA NA 7p gain 68 (19%) 295 0.1829 1 0.02254 1 0.16583 1 1 1 0.47596 1 0.01481 1 0.89968 1 0.017121 1 0.0247 1 0.12483 1 0.0022872 1 0.18353 1 0.51934 1 1 1 7q gain 62 (17%) 301 0.19951 1 0.035982 1 0.3662 1 0.13643 1 0.7053 1 0.01218 1 0.11439 1 0.061111 1 0.073689 1 0.23102 1 0.011449 1 0.20108 1 0.23735 1 1 1 8p gain 48 (13%) 315 0.97589 1 0.01686 1 0.10714 1 1 1 0.23103 1 0.1018 1 0.74269 1 7.1018e-05 0.0707 0.00066677 0.647 0.055536 1 8.0968e-05 0.0806 0.016007 1 0.87448 1 0.65755 1 8q gain 78 (21%) 285 0.6667 1 0.27863 1 0.03462 1 0.70344 1 0.31391 1 0.48909 1 0.52876 1 0.0011566 1 2.7536e-05 0.0277 0.8134 1 0.0026667 1 0.065031 1 0.64718 1 0.73084 1 9p gain 19 (5%) 344 0.49583 1 0.021901 1 0.01125 1 0.15395 1 0.14349 1 0.18631 1 0.092322 1 0.072114 1 0.020714 1 0.81347 1 0.001461 1 0.0072132 1 0.90783 1 0.3465 1 9q gain 32 (9%) 331 0.39653 1 0.043094 1 0.00087999 0.845 0.023202 1 0.096875 1 0.23726 1 0.0088036 1 0.0012728 1 4.8707e-05 0.0487 0.50474 1 3.7633e-05 0.0379 0.013808 1 0.72218 1 0.46119 1 10p gain 9 (2%) 354 0.6489 1 0.50483 1 0.39297 1 0.32165 1 0.28249 1 0.42516 1 0.35659 1 0.68187 1 0.73226 1 0.43603 1 0.028192 1 0.87788 1 0.92869 1 1 1 10q gain 10 (3%) 353 0.61298 1 0.66476 1 0.30638 1 0.62172 1 0.30884 1 0.46736 1 0.36195 1 0.66085 1 0.55968 1 0.8894 1 0.055566 1 0.43321 1 0.078621 1 1 1 11p gain 13 (4%) 350 0.54951 1 0.38982 1 0.065809 1 0.076469 1 1 1 0.10186 1 0.093395 1 0.013568 1 0.0069955 1 0.22868 1 0.0015231 1 0.79495 1 0.46864 1 0.26347 1 11q gain 15 (4%) 348 0.52815 1 0.35824 1 0.067799 1 0.12443 1 1 1 0.10192 1 0.18215 1 0.0031703 1 0.0013796 1 0.20184 1 0.00038143 0.373 0.42521 1 0.96264 1 0.2621 1 12p gain 8 (2%) 355 0.67535 1 0.038435 1 0.03927 1 0.04035 1 1 1 0.01172 1 0.016632 1 0.0083584 1 0.0074568 1 0.26691 1 0.00071904 0.695 0.115 1 0.22187 1 NA NA 12q gain 8 (2%) 355 0.65866 1 0.10407 1 0.03881 1 0.04035 1 1 1 0.00124 1 0.016632 1 0.0083584 1 0.00089908 0.861 0.60662 1 0.00071904 0.695 0.09759 1 0.22187 1 NA NA 13q gain 5 (1%) 358 0.63011 1 0.7302 1 1 1 1 1 0.16755 1 0.69536 1 0.41159 1 0.10959 1 0.9082 1 0.018979 1 0.80158 1 0.90382 1 0.31666 1 NA NA 14q gain 8 (2%) 355 0.06823 1 0.10976 1 1 1 0.26415 1 0.25522 1 0.082529 1 0.19199 1 0.039861 1 0.021125 1 0.60662 1 0.0061013 1 0.40603 1 0.58827 1 NA NA 15q gain 5 (1%) 358 0.76515 1 0.44331 1 1 1 0.54112 1 1 1 0.69517 1 0.68345 1 0.54096 1 0.56101 1 0.6042 1 0.1662 1 0.69771 1 0.61509 1 NA NA 16p gain 20 (6%) 343 0.50602 1 0.28066 1 0.0042 1 0.078615 1 0.52743 1 0.73109 1 0.071373 1 0.011931 1 0.00087888 0.845 0.53965 1 0.0017742 1 0.78455 1 0.1809 1 1 1 16q gain 7 (2%) 356 0.81042 1 0.025352 1 0.31853 1 0.54112 1 1 1 0.77204 1 0.7879 1 0.18831 1 0.076513 1 0.98044 1 0.10448 1 0.49977 1 0.71733 1 1 1 17p gain 5 (1%) 358 0.79142 1 0.65249 1 0.13814 1 0.15135 1 1 1 0.69689 1 0.063763 1 0.36922 1 0.06298 1 0.8207 1 0.42846 1 0.99656 1 0.21186 1 NA NA 17q gain 6 (2%) 357 0.75854 1 0.88821 1 0.11914 1 0.04035 1 1 1 0.74463 1 0.0087536 1 0.23242 1 0.043578 1 0.92975 1 0.29521 1 0.52917 1 0.37237 1 NA NA 18p gain 12 (3%) 351 0.65489 1 0.062607 1 0.03212 1 0.15979 1 1 1 1 1 0.15621 1 0.1915 1 0.49375 1 0.39689 1 0.29757 1 0.2539 1 0.90796 1 1 1 18q gain 5 (1%) 358 0.77499 1 0.12361 1 0.14073 1 1 1 1 1 1 1 0.35725 1 0.46201 1 0.9082 1 0.25511 1 0.55022 1 0.71213 1 0.74568 1 NA NA 19p gain 6 (2%) 357 0.69673 1 0.44303 1 0.0133 1 1 1 1 1 0.51155 1 0.93872 1 0.022018 1 0.014519 1 0.24632 1 0.031737 1 0.008904 1 0.96621 1 NA NA 19q gain 6 (2%) 357 0.6489 1 0.33713 1 0.01299 1 1 1 1 1 0.51134 1 0.93872 1 0.022018 1 0.043578 1 0.084388 1 0.031737 1 0.015587 1 0.83407 1 1 1 20p gain 13 (4%) 350 0.58172 1 0.20682 1 0.13865 1 0.099061 1 1 1 0.54474 1 0.058499 1 0.01795 1 0.034648 1 0.11129 1 0.0037717 1 0.8582 1 0.92768 1 NA NA 20q gain 16 (4%) 347 0.51 1 0.062314 1 0.01458 1 0.26103 1 1 1 0.30202 1 0.1691 1 0.033374 1 0.012221 1 0.41689 1 0.0012175 1 0.15236 1 0.84317 1 1 1 21q gain 13 (4%) 350 0.49568 1 0.0089419 1 0.14067 1 0.40912 1 0.38262 1 0.18434 1 0.40515 1 0.15087 1 0.034648 1 0.79245 1 0.0023013 1 0.27708 1 0.25276 1 1 1 xq gain 4 (1%) 359 0.76112 1 0.2645 1 0.18814 1 1 1 1 1 0.02589 1 0.41159 1 0.14917 1 0.038152 1 0.80024 1 0.052682 1 0.47279 1 0.77574 1 NA NA 1p loss 13 (4%) 350 0.53168 1 0.54153 1 0.13901 1 0.70109 1 1 1 0.64976 1 0.44976 1 0.0013912 1 0.0013444 1 0.11129 1 0.0018195 1 0.50458 1 0.053029 1 1 1 2p loss 9 (2%) 354 0.57499 1 0.052807 1 0.19345 1 0.36756 1 1 1 0.80892 1 0.21276 1 0.29255 1 0.25815 1 0.5594 1 0.68667 1 0.35234 1 0.56103 1 NA NA 2q loss 10 (3%) 353 0.57499 1 0.12679 1 0.11241 1 0.36741 1 1 1 0.67199 1 0.18817 1 0.1968 1 0.18606 1 0.51746 1 0.52558 1 0.53979 1 0.56103 1 NA NA 3p loss 6 (2%) 357 0.61645 1 0.6016 1 0.45746 1 0.20684 1 1 1 0.22395 1 0.12044 1 0.0017841 1 0.043578 1 0.0029044 1 0.00044661 0.435 0.27882 1 0.26457 1 NA NA 3q loss 4 (1%) 359 0.64409 1 0.29729 1 0.66034 1 1 1 1 1 0.41588 1 0.41159 1 0.023595 1 0.091602 1 0.049719 1 0.0048583 1 0.25851 1 0.64984 1 NA NA 4p loss 14 (4%) 349 0.5994 1 0.33295 1 0.03473 1 0.00015079 0.149 0.40556 1 0.00237 1 2.3072e-06 0.00235 2.1409e-06 0.00218 0.00014681 0.145 0.001063 1 2.2042e-05 0.0222 0.20469 1 0.53621 1 1 1 4q loss 10 (3%) 353 0.66858 1 0.3431 1 0.063689 1 0.040384 1 0.30884 1 0.069089 1 0.025727 1 0.00014425 0.143 0.0016755 1 0.0093859 1 0.00017364 0.171 0.33607 1 0.10707 1 1 1 5p loss 7 (2%) 356 0.75411 1 0.80731 1 0.0087699 1 0.26415 1 1 1 0.56381 1 0.35216 1 0.00049158 0.478 5.3601e-05 0.0535 0.23594 1 0.00092871 0.889 0.49744 1 0.86653 1 1 1 5q loss 12 (3%) 351 0.69803 1 0.98857 1 0.01556 1 0.056867 1 1 1 0.61463 1 0.028212 1 6.0228e-05 0.06 5.463e-06 0.00553 0.39689 1 4.1834e-05 0.042 0.40336 1 0.84081 1 1 1 6p loss 15 (4%) 348 0.61747 1 0.62852 1 0.028 1 0.011379 1 1 1 0.24999 1 0.0059107 1 0.0017664 1 0.00010579 0.105 0.63522 1 0.00011759 0.117 0.83976 1 0.14925 1 0.30583 1 6q loss 29 (8%) 334 0.40595 1 0.43949 1 0.0098499 1 0.0033504 1 1 1 0.096159 1 0.00089341 0.857 2.9773e-07 0.000305 6.9133e-06 0.007 0.0027314 1 4.8826e-08 5.01e-05 0.63409 1 0.70763 1 0.12463 1 8p loss 121 (33%) 242 0.98592 1 0.85598 1 0.00134 1 0.23311 1 1 1 0.88172 1 0.16279 1 0.73601 1 0.016685 1 0.053431 1 0.8872 1 0.61142 1 0.10257 1 0.16159 1 8q loss 19 (5%) 344 0.0020977 1 0.94407 1 0.0050299 1 0.0072553 1 1 1 0.096439 1 0.00070334 0.681 0.028465 1 0.015044 1 0.37643 1 0.028993 1 0.66124 1 0.40505 1 1 1 9p loss 15 (4%) 348 0.5922 1 0.50426 1 0.069369 1 0.047751 1 1 1 0.76464 1 0.015922 1 0.012802 1 0.029436 1 0.10117 1 0.0019901 1 0.92248 1 0.82965 1 1 1 9q loss 6 (2%) 357 0.74073 1 0.46604 1 1 1 1 1 1 1 0.69779 1 0.76138 1 0.032225 1 0.39541 1 0.015899 1 0.0052484 1 0.67148 1 0.45226 1 1 1 10p loss 30 (8%) 333 0.74575 1 0.088741 1 0.00076999 0.742 0.041756 1 1 1 0.04518 1 0.024656 1 4.0049e-05 0.0402 0.00039448 0.385 0.0071833 1 4.4582e-05 0.0446 0.45928 1 0.61175 1 1 1 10q loss 32 (9%) 331 0.75348 1 0.24916 1 0.0168 1 0.023202 1 1 1 0.03753 1 0.012821 1 1.4548e-06 0.00148 0.00068837 0.667 0.00012119 0.12 2.0325e-06 0.00207 0.26395 1 0.81368 1 0.58321 1 11p loss 3 (1%) 360 NA NA 0.087124 1 0.297 1 1 1 1 1 0.28649 1 0.4786 1 0.25531 1 0.052115 1 0.64595 1 0.32123 1 0.47183 1 0.48875 1 NA NA 12p loss 31 (9%) 332 0.3757 1 0.84301 1 0.17024 1 0.062279 1 0.61342 1 0.28991 1 0.07316 1 0.0017646 1 0.0011625 1 0.13201 1 0.0030356 1 0.44937 1 0.046705 1 1 1 12q loss 13 (4%) 350 0.60701 1 0.7892 1 0.2011 1 0.099061 1 1 1 0.57107 1 0.10077 1 0.031245 1 0.0069955 1 0.46329 1 0.021852 1 0.75659 1 0.69036 1 1 1 13q loss 53 (15%) 310 0.2223 1 0.11551 1 0.04036 1 0.040442 1 0.70144 1 0.17063 1 0.017156 1 1.048e-06 0.00107 0.00030512 0.3 0.00042146 0.411 6.2913e-08 6.45e-05 0.046413 1 0.45595 1 0.4387 1 14q loss 18 (5%) 345 0.37327 1 0.77434 1 0.01574 1 0.30438 1 0.48964 1 0.28322 1 0.33563 1 0.0035942 1 0.004076 1 0.16762 1 0.0034878 1 0.031979 1 0.28263 1 1 1 15q loss 22 (6%) 341 0.48487 1 0.27633 1 0.00135 1 0.20002 1 0.56263 1 0.86013 1 0.19763 1 0.00093879 0.897 4.3693e-05 0.0438 0.51563 1 0.0021575 1 0.49253 1 0.38951 1 1 1 16p loss 21 (6%) 342 0.46357 1 0.94751 1 1 1 0.32993 1 1 1 0.69474 1 0.22439 1 0.39728 1 0.11617 1 0.79394 1 0.24036 1 0.7029 1 0.73098 1 1 1 16q loss 69 (19%) 294 0.76763 1 0.5693 1 0.10172 1 0.8421 1 1 1 0.64627 1 0.82555 1 0.0033231 1 0.00021627 0.213 0.5192 1 0.0056467 1 0.054334 1 0.30331 1 1 1 17p loss 53 (15%) 310 0.24794 1 0.50865 1 0.0058399 1 0.014953 1 0.70144 1 0.1657 1 0.0074456 1 0.00031068 0.305 0.00035525 0.349 0.17635 1 0.00020478 0.202 0.21084 1 0.21064 1 0.70011 1 17q loss 12 (3%) 351 0.59579 1 0.74075 1 0.22236 1 1 1 1 1 0.093719 1 0.50636 1 0.036826 1 0.023068 1 0.44588 1 0.14975 1 0.97755 1 0.34366 1 1 1 18p loss 48 (13%) 315 0.32466 1 0.49668 1 0.097789 1 0.48445 1 0.68493 1 0.051159 1 0.35 1 0.00077979 0.751 0.0050658 1 0.019229 1 4.5957e-05 0.046 0.41095 1 0.90304 1 0.70249 1 18q loss 71 (20%) 292 0.63519 1 0.39733 1 0.060779 1 0.0081295 1 1 1 0.00037 0.362 0.0029956 1 5.0031e-06 0.00507 0.001643 1 0.00035808 0.351 4.5714e-07 0.000468 0.2125 1 0.53368 1 0.75275 1 19p loss 13 (4%) 350 0.56864 1 0.055245 1 0.37529 1 1 1 1 1 0.65045 1 0.91162 1 0.023526 1 0.016183 1 0.41501 1 0.071979 1 0.26125 1 0.18645 1 1 1 19q loss 13 (4%) 350 0.56864 1 0.055245 1 0.37576 1 1 1 1 1 0.64894 1 0.91162 1 0.023526 1 0.016183 1 0.41501 1 0.071979 1 0.26125 1 0.18645 1 1 1 20p loss 13 (4%) 350 0.086129 1 0.51806 1 0.03869 1 0.19838 1 1 1 1 1 0.15064 1 0.99163 1 0.1089 1 0.065706 1 0.80733 1 0.13228 1 0.6415 1 0.34576 1 20q loss 7 (2%) 356 0.75243 1 0.050379 1 0.04306 1 1 1 1 1 1 1 0.8027 1 0.18831 1 0.013915 1 0.47323 1 0.26912 1 0.15162 1 0.72628 1 1 1 21q loss 14 (4%) 349 0.61621 1 0.71755 1 0.0339 1 0.025638 1 0.40556 1 0.65052 1 0.0089576 1 0.00070367 0.681 0.0015334 1 0.076213 1 0.00078982 0.76 0.089251 1 0.39392 1 1 1 22q loss 32 (9%) 331 0.53405 1 0.5027 1 0.00067999 0.66 0.026032 1 0.096875 1 0.12006 1 0.017975 1 1.0918e-05 0.011 2.1062e-05 0.0213 0.031179 1 3.0083e-06 0.00306 0.67212 1 0.20682 1 0.49278 1 xq loss 29 (8%) 334 0.42833 1 0.094375 1 0.11792 1 0.15745 1 0.2785 1 0.51761 1 0.074732 1 3.1178e-06 0.00316 1.2636e-06 0.00129 0.068909 1 1.4477e-05 0.0146 0.0904 1 0.37597 1 0.38648 1