Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nMutated (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
SPOP	26 (10%)	235	9.9999e-06	0.00338	9.9999e-06	0.00338	0.33563	1	0.28352	1	9.9999e-06	0.00338	9.9999e-06	0.00338	0.96609	1	0.051379	1	0.12606	1	0.35288	1
TP53	23 (9%)	238	9.9999e-06	0.00338	0.32654	1	0.0080499	1	0.0063299	1	0.01085	1	0.01093	1	0.73685	1	0.4123	1	0.085249	1	0.03959	1
PTEN	13 (5%)	248	0.6189	1	0.40554	1	0.2001	1	0.3047	1	0.078009	1	0.064449	1	0.278	1	0.28704	1	0.15087	1	0.074629	1
CTNNB1	9 (3%)	252	0.44304	1	0.062249	1	0.03956	1	0.03844	1	0.32932	1	0.14339	1	0.12554	1	0.04614	1	0.18729	1	0.12714	1
TCEB3	4 (2%)	257	0.64369	1	0.3914	1	0.11563	1	0.62917	1	0.39158	1	0.32708	1	0.15361	1	0.16029	1	0.18059	1	0.43945	1
FOXA1	12 (5%)	249	0.0037	1	0.0161	1	1	1	0.49166	1	0.23758	1	0.02707	1	0.18988	1	0.13482	1	0.19922	1	0.67672	1
BRAF	6 (2%)	255	0.73484	1	0.27344	1	0.83289	1	1	1	0.25171	1	0.0090699	1	0.51763	1	0.52337	1	0.51099	1	0.66342	1
PIK3CA	9 (3%)	252	0.30941	1	0.00411	1	0.04102	1	0.03831	1	0.055749	1	0.00207	0.689	0.10398	1	0.074109	1	0.94845	1	0.21417	1
IDH1	4 (2%)	257	0.04016	1	0.01429	1	0.061879	1	0.051239	1	0.0075399	1	0.0090199	1	0.39188	1	0.03563	1	0.52289	1	0.075429	1
FAM47C	8 (3%)	253	0.41695	1	0.22152	1	1	1	1	1	0.90695	1	0.60217	1	0.49715	1	0.54765	1	0.36746	1	0.26671	1
TP53BP1	5 (2%)	256	0.03373	1	0.10522	1	0.12043	1	0.1497	1	0.44581	1	0.02596	1	1	1	0.28902	1	0.72042	1	0.079209	1
CNTNAP1	5 (2%)	256	0.16813	1	0.076459	1	NA	NA	NA	NA	0.2658	1	0.39214	1	0.73789	1	0.02022	1	NA	NA	NA	NA
MLLT10	4 (2%)	257	0.64499	1	0.4709	1	0.55921	1	0.68932	1	1	1	0.68989	1	0.072189	1	0.41612	1	NA	NA	NA	NA
ZMYM3	6 (2%)	255	0.53464	1	0.0062199	1	0.44332	1	0.39173	1	0.04019	1	0.14609	1	0.02783	1	0.13987	1	0.04522	1	0.093929	1
SMG7	4 (2%)	257	0.64278	1	0.62835	1	1	1	1	1	0.11346	1	0.0086599	1	0.55636	1	0.23858	1	0.52376	1	0.45248	1
EDC4	3 (1%)	258	0.058969	1	0.27027	1	NA	NA	NA	NA	0.40268	1	0.30947	1	0.51763	1	0.03258	1	0.60065	1	1	1
ZNF709	4 (2%)	257	0.82157	1	0.059289	1	0.45169	1	0.38917	1	0.39401	1	1	1	0.55643	1	0.071619	1	0.88223	1	0.85238	1
CDK12	7 (3%)	254	0.00222	0.737	0.37832	1	0.03983	1	0.03961	1	1	1	0.25536	1	0.30363	1	0.04493	1	0.44055	1	0.92196	1
RPTN	6 (2%)	255	0.11454	1	0.076569	1	0.11504	1	0.11534	1	0.87509	1	0.45113	1	0.5175	1	0.1607	1	0.71221	1	0.95967	1
TNRC18	4 (2%)	257	0.16866	1	0.6966	1	NA	NA	NA	NA	1	1	1	1	0.55493	1	0.59423	1	1	1	1	1
MED15	5 (2%)	256	0.68785	1	0.094119	1	0.44358	1	0.73543	1	0.63107	1	0.44901	1	0.52742	1	0.84369	1	0.5226	1	0.6182	1
NKX3-1	5 (2%)	256	0.47165	1	0.22692	1	0.02826	1	0.051159	1	0.86423	1	0.86644	1	0.32648	1	0.79398	1	NA	NA	NA	NA
KDM6A	6 (2%)	255	0.01015	1	0.29124	1	0.83223	1	0.69079	1	0.01351	1	0.25339	1	0.87634	1	0.096469	1	0.59983	1	0.1057	1
RNF31	4 (2%)	257	1	1	0.28025	1	0.67979	1	0.5592	1	0.51924	1	1	1	0.55304	1	0.099209	1	0.51202	1	0.66235	1
ESCO1	4 (2%)	257	0.82054	1	0.28229	1	0.47533	1	0.37787	1	0.20741	1	0.5494	1	0.073779	1	0.77871	1	NA	NA	NA	NA
LMOD2	3 (1%)	258	1	1	0.83221	1	NA	NA	NA	NA	1	1	1	1	1	1	1	1	0.29581	1	0.41032	1
FAM120B	3 (1%)	258	0.19826	1	0.27165	1	NA	NA	NA	NA	0.39877	1	0.53195	1	0.77787	1	0.088889	1	NA	NA	NA	NA
CLEC1A	4 (2%)	257	0.82046	1	0.31321	1	NA	NA	NA	NA	0.15608	1	0.21428	1	0.47013	1	1	1	NA	NA	NA	NA
ITGA2B	3 (1%)	258	1	1	0.32735	1	0.7841	1	0.78134	1	0.643	1	0.30883	1	0.51513	1	0.44319	1	0.43182	1	0.66355	1
RNF17	3 (1%)	258	1	1	0.72474	1	0.01607	1	0.02518	1	0.10994	1	0.11135	1	0.20026	1	0.92045	1	NA	NA	NA	NA
RP1L1	7 (3%)	254	0.75057	1	0.76241	1	0.44421	1	0.39033	1	0.71179	1	0.40033	1	0.068879	1	0.35224	1	0.063339	1	0.10521	1
EOMES	4 (2%)	257	0.25049	1	0.7816	1	0.78263	1	0.78112	1	0.26681	1	0.16242	1	1	1	0.43867	1	0.01808	1	0.28973	1
MTF1	3 (1%)	258	0.12769	1	0.62951	1	NA	NA	NA	NA	0.2023	1	0.20607	1	0.64336	1	0.36795	1	NA	NA	NA	NA
NTM	5 (2%)	256	1	1	0.44176	1	0.12168	1	0.33128	1	0.32647	1	0.37638	1	0.73595	1	0.57874	1	NA	NA	NA	NA
FNBP4	3 (1%)	258	0.33736	1	0.0067599	1	NA	NA	NA	NA	0.3986	1	0.30834	1	0.51503	1	0.13589	1	NA	NA	NA	NA
CDKN1B	4 (2%)	257	0.64456	1	0.13988	1	0.24234	1	0.3102	1	0.46326	1	0.11806	1	0.55455	1	0.061729	1	0.51132	1	0.17699	1
EIF2AK3	4 (2%)	257	0.64703	1	0.35243	1	NA	NA	NA	NA	1	1	0.84337	1	0.39206	1	0.94875	1	0.79101	1	0.49826	1
LARP1	3 (1%)	258	0.5524	1	0.26788	1	NA	NA	NA	NA	0.7789	1	1	1	1	1	0.7915	1	NA	NA	NA	NA