Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q21.3	48 (29%)	117	1	1	0.85127	1	0.00332	1	0.92571	1	0.53226	1	0.22619	1	0.50629	1	0.36204	1	0.056709	1	0.15023	1	0.92769	1	0.39506	1
amp_1q32.2	48 (29%)	117	0.8274	1	0.93655	1	0.03871	1	0.51324	1	0.18671	1	0.02765	1	0.50716	1	0.54347	1	0.081119	1	0.65108	1	0.29713	1	0.11856	1
amp_5q22.3	20 (12%)	145	0.02199	1	0.17419	1	0.0085899	1	0.22414	1	0.10569	1	0.65844	1	0.72102	1	0.68112	1	0.45291	1	0.66324	1	1	1	0.28546	1
amp_6p21.1	54 (33%)	111	0.058679	1	0.10598	1	0.00061999	0.425	0.059789	1	0.80783	1	0.04579	1	0.57357	1	0.33734	1	0.19201	1	0.38957	1	0.36727	1	0.78274	1
amp_8p11.23	53 (32%)	112	0.00353	1	0.20753	1	9.9999e-06	0.00699	0.26571	1	0.37677	1	0.12891	1	0.12505	1	0.03427	1	0.04868	1	0.02724	1	0.97906	1	0.11901	1
amp_8p11.21	70 (42%)	95	0.01193	1	0.21115	1	9.9999e-06	0.00699	0.23406	1	0.36994	1	0.52016	1	0.22666	1	0.13383	1	0.18234	1	0.2741	1	0.22578	1	0.32212	1
amp_8q24.21	109 (66%)	56	0.01691	1	0.242	1	9.9999e-06	0.00699	0.12736	1	0.62787	1	0.88698	1	0.03069	1	0.0072599	1	0.54013	1	0.26338	1	0.074849	1	0.4434	1
amp_10q22.2	11 (7%)	154	0.50053	1	0.93062	1	0.53629	1	1	1	1	1	0.97202	1	0.21965	1	0.19118	1	0.37664	1	0.18854	1	NA	NA	NA	NA
amp_11p15.5	45 (27%)	120	0.38128	1	0.096089	1	0.078869	1	0.62119	1	0.7203	1	0.58575	1	0.13652	1	0.03385	1	0.097199	1	0.53835	1	0.45195	1	0.089689	1
amp_11q13.3	28 (17%)	137	0.32719	1	0.33171	1	0.03509	1	0.00418	1	0.91216	1	0.73137	1	0.14187	1	0.00189	1	0.01416	1	0.33777	1	0.078309	1	0.13489	1
amp_12p13.33	41 (25%)	124	0.68863	1	0.48261	1	0.03322	1	0.72361	1	0.11401	1	0.21523	1	0.8095	1	0.83197	1	0.57778	1	0.81705	1	0.43709	1	0.23024	1
amp_12p12.1	40 (24%)	125	0.70014	1	0.46818	1	0.03025	1	0.36646	1	0.04933	1	0.0086799	1	0.7041	1	0.51128	1	0.69186	1	0.7594	1	0.4357	1	0.1468	1
amp_13q12.13	126 (76%)	39	0.41597	1	0.17577	1	2e-05	0.0139	0.17297	1	0.32535	1	0.43602	1	0.00165	1	0.00223	1	0.00269	1	0.00397	1	0.93852	1	0.78178	1
amp_13q12.2	125 (76%)	40	0.36318	1	0.23508	1	9.9999e-06	0.00699	0.11549	1	0.59191	1	0.58857	1	0.0158	1	0.0119	1	0.02131	1	0.02182	1	0.82438	1	0.63634	1
amp_13q22.1	120 (73%)	45	0.26495	1	0.064449	1	2e-05	0.0139	0.03434	1	0.90664	1	0.27125	1	0.00461	1	0.00105	0.712	0.00442	1	0.01042	1	1	1	0.40032	1
amp_15q26.1	13 (8%)	152	0.11097	1	0.21077	1	1	1	0.42038	1	0.15345	1	0.34563	1	0.090819	1	0.12223	1	0.90727	1	1	1	0.74406	1	0.64109	1
amp_16p11.2	47 (28%)	118	0.12321	1	0.57705	1	5e-04	0.343	0.1281	1	0.3428	1	0.66635	1	0.15342	1	0.11916	1	0.096809	1	0.85099	1	0.64291	1	0.98739	1
amp_17q12	46 (28%)	119	0.0064199	1	0.12854	1	0.00152	1	0.37623	1	0.17593	1	0.9159	1	0.43378	1	0.02532	1	0.14883	1	0.59721	1	0.11913	1	0.63749	1
amp_17q24.1	39 (24%)	126	0.29372	1	0.70713	1	0.00084999	0.578	0.14787	1	0.60984	1	0.74817	1	0.6397	1	0.16982	1	0.61003	1	0.20576	1	0.49627	1	0.93828	1
amp_19p13.2	36 (22%)	129	0.01996	1	0.24914	1	0.00104	0.706	0.5307	1	0.54415	1	0.085299	1	0.059199	1	0.70394	1	0.58771	1	0.69532	1	0.86987	1	0.86961	1
amp_20q11.21	146 (88%)	19	0.0068399	1	0.16392	1	0.00066999	0.458	0.02027	1	0.19224	1	0.36667	1	0.058739	1	0.003	1	0.0073999	1	0.39663	1	0.49579	1	0.59228	1
amp_20q11.23	147 (89%)	18	0.0078899	1	0.16258	1	0.00137	0.926	0.04854	1	0.19419	1	0.37174	1	0.04022	1	0.00244	1	0.01493	1	0.27849	1	0.36123	1	1	1
amp_20q13.31	148 (90%)	17	0.0045	1	0.10604	1	0.00248	1	0.0467	1	0.19532	1	0.37062	1	0.060269	1	0.0062899	1	0.0215	1	0.38207	1	0.36257	1	1	1
amp_xp22.2	32 (19%)	133	0.052639	1	0.22074	1	0.59469	1	0.27513	1	0.96058	1	0.23531	1	0.70855	1	0.17349	1	0.81255	1	0.8688	1	0.18261	1	0.94984	1
del_1p36.11	75 (45%)	90	0.1127	1	0.063909	1	0.19646	1	0.14456	1	0.70332	1	0.92317	1	0.72923	1	0.0215	1	0.49533	1	0.064639	1	0.35552	1	0.79769	1
del_1p33	53 (32%)	112	0.36473	1	0.00398	1	0.01632	1	0.13881	1	0.80046	1	0.31046	1	0.69836	1	0.16229	1	0.44456	1	0.26639	1	0.55761	1	0.56667	1
del_1p13.2	54 (33%)	111	0.47344	1	0.02409	1	0.00276	1	0.5764	1	0.54598	1	0.57195	1	0.24386	1	0.02898	1	0.50527	1	0.21133	1	0.64775	1	0.61473	1
del_2p12	13 (8%)	152	0.39437	1	0.83744	1	2e-05	0.0139	1	1	0.3437	1	0.14863	1	0.25096	1	0.099579	1	0.15045	1	0.14458	1	NA	NA	NA	NA
del_3p14.2	31 (19%)	134	0.80047	1	0.70068	1	0.77609	1	1	1	0.21649	1	0.71587	1	0.345	1	0.76389	1	0.80879	1	0.95996	1	0.25723	1	0.24812	1
del_3q26.31	18 (11%)	147	1	1	0.86848	1	0.1509	1	0.47739	1	0.44761	1	0.23882	1	0.11111	1	0.52882	1	0.26399	1	0.057539	1	0.7846	1	0.36727	1
del_4p13	60 (36%)	105	0.78209	1	0.03859	1	0.00075999	0.518	0.069139	1	0.83794	1	0.50454	1	0.71056	1	0.25373	1	0.97845	1	0.21856	1	0.16531	1	0.49911	1
del_4q22.1	73 (44%)	92	0.61618	1	0.02467	1	0.00041	0.282	0.23499	1	0.7013	1	0.47719	1	0.39442	1	0.31162	1	0.9865	1	0.25446	1	0.61538	1	0.70612	1
del_4q35.1	72 (44%)	93	0.6099	1	0.063439	1	0.00195	1	0.10644	1	0.38285	1	0.65552	1	0.25106	1	0.03098	1	0.48444	1	0.050459	1	0.5491	1	0.85125	1
del_5q12.1	53 (32%)	112	0.067699	1	0.00196	1	0.20387	1	0.00378	1	0.78157	1	0.27649	1	0.59488	1	0.02958	1	0.53415	1	0.28871	1	0.02759	1	0.23632	1
del_5q22.2	59 (36%)	106	0.18501	1	0.00078999	0.538	0.17837	1	0.18886	1	0.54907	1	0.72965	1	1	1	0.098269	1	0.74025	1	0.23997	1	0.01994	1	0.1943	1
del_6p25.3	24 (15%)	141	1	1	0.94079	1	0.81187	1	0.01989	1	0.65278	1	0.98499	1	0.94894	1	0.86702	1	0.75339	1	0.78646	1	0.56869	1	0.75583	1
del_6q26	30 (18%)	135	0.15671	1	0.74513	1	0.01407	1	0.63339	1	0.099169	1	0.19917	1	0.26436	1	0.11962	1	0.053369	1	0.33295	1	0.078579	1	0.94883	1
del_7q31.1	4 (2%)	161	NA	NA	NA	NA	0.10513	1	NA	NA	1	1	0.95161	1	0.75923	1	0.76456	1	1	1	1	1	NA	NA	NA	NA
del_8p23.2	100 (61%)	65	0.11055	1	0.088519	1	0.00015	0.103	0.4607	1	1	1	0.27059	1	0.064039	1	0.02648	1	0.77885	1	0.33115	1	0.55717	1	0.50597	1
del_8p11.21	45 (27%)	120	0.74523	1	0.4692	1	0.0096399	1	0.23544	1	0.070099	1	0.36766	1	0.02162	1	0.01208	1	0.058949	1	0.0076499	1	0.33916	1	0.74224	1
del_10q21.1	41 (25%)	124	0.27975	1	0.7109	1	0.25704	1	0.48455	1	0.01717	1	0.066999	1	0.19554	1	0.6697	1	0.86051	1	0.19086	1	0.96333	1	0.39164	1
del_10q25.2	48 (29%)	117	0.75933	1	0.7743	1	0.7371	1	0.4879	1	0.45713	1	0.23914	1	0.68768	1	0.22348	1	0.62071	1	0.27548	1	0.44304	1	0.3001	1
del_11q22.3	38 (23%)	127	0.03343	1	0.03061	1	0.00293	1	0.03488	1	0.68929	1	0.13439	1	0.070979	1	0.071559	1	0.44972	1	0.96559	1	0.41615	1	0.66446	1
del_12p13.1	33 (20%)	132	1	1	0.26299	1	0.60196	1	0.19686	1	0.53658	1	0.27543	1	0.52959	1	0.14926	1	0.29236	1	0.52628	1	0.81405	1	0.83061	1
del_12q22	26 (16%)	139	0.35375	1	0.47718	1	0.03414	1	0.77284	1	0.82365	1	0.51338	1	0.87938	1	0.4982	1	0.51409	1	0.7064	1	0.4922	1	0.38737	1
del_14q11.2	70 (42%)	95	0.48307	1	0.12839	1	0.00021	0.144	0.93248	1	0.70331	1	0.69285	1	0.068559	1	0.27616	1	0.10986	1	0.34234	1	0.75084	1	0.78478	1
del_14q31.1	72 (44%)	93	0.48173	1	0.23732	1	0.053109	1	0.96617	1	0.70677	1	0.20056	1	0.080539	1	0.14192	1	0.19758	1	0.2355	1	0.39063	1	0.65767	1
del_15q21.1	79 (48%)	86	0.57194	1	0.11125	1	0.00074999	0.512	0.78829	1	0.03189	1	0.32484	1	0.5386	1	0.70083	1	0.81009	1	0.43655	1	0.42428	1	0.58598	1
del_15q22.33	77 (47%)	88	0.62423	1	0.15513	1	8.9999e-05	0.0621	0.59605	1	0.14761	1	0.058679	1	0.7859	1	0.18448	1	0.42123	1	0.7459	1	0.85625	1	0.52161	1
del_16p13.3	13 (8%)	152	0.88611	1	0.67719	1	0.2041	1	0.02089	1	0.72696	1	0.59469	1	0.91355	1	0.83002	1	0.35663	1	0.6349	1	0.25357	1	0.48867	1
del_16q23.1	23 (14%)	142	0.15369	1	0.35097	1	0.00335	1	0.12724	1	0.58938	1	0.9515	1	0.58894	1	0.65577	1	0.75965	1	0.84513	1	0.88916	1	0.86865	1
del_17p11.2	113 (68%)	52	0.082919	1	0.75622	1	0.070609	1	0.28998	1	0.83122	1	0.35686	1	0.86389	1	0.97262	1	0.93431	1	0.35153	1	0.63312	1	0.70403	1
del_18q21.2	145 (88%)	20	0.13102	1	0.33687	1	2e-05	0.0139	0.04585	1	1	1	0.77042	1	0.93617	1	0.81083	1	0.40135	1	0.1218	1	0.90183	1	0.8664	1
del_18q22.1	141 (85%)	24	0.066489	1	0.088729	1	9.9999e-06	0.00699	0.02747	1	0.7767	1	0.65137	1	0.62161	1	0.67988	1	0.82913	1	0.29945	1	0.78517	1	1	1
del_19p13.3	37 (22%)	128	0.19782	1	0.88607	1	0.67482	1	0.04163	1	0.96095	1	0.83242	1	0.90106	1	0.53243	1	0.35434	1	0.00134	0.907	0.52897	1	0.3302	1
del_20p12.1	49 (30%)	116	0.94177	1	0.33637	1	0.01497	1	0.49391	1	0.26296	1	0.38306	1	0.67929	1	0.9691	1	0.35722	1	0.25346	1	0.43902	1	0.43995	1
del_21q11.2	73 (44%)	92	0.31342	1	0.059319	1	0.083709	1	0.87455	1	0.92253	1	0.21321	1	0.24868	1	0.48528	1	0.063599	1	0.72421	1	0.22078	1	0.18971	1
del_22q13.31	68 (41%)	97	0.90748	1	0.29006	1	0.0078599	1	0.86981	1	0.40855	1	0.3503	1	0.064369	1	0.12326	1	0.0062699	1	0.11488	1	0.10022	1	0.01369	1
del_xp22.33	34 (21%)	131	0.77785	1	0.91577	1	0.053369	1	0.0015	1	0.72535	1	0.89584	1	0.673	1	0.50159	1	0.69522	1	1	1	0.62708	1	0.5858	1