		Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p32.1	94 (37%)	163	0.00082999	0.284	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	0.0091399	1	0.00473	1	0.2109	1	0.00072999	0.255
amp_1q21.3	104 (40%)	153	9.9999e-06	0.00528	0.0079899	1	0.17369	1	0.091919	1	0.55437	1	0.13177	1	0.062429	1	0.24804	1
amp_1q24.3	102 (40%)	155	9.9999e-06	0.00528	0.0050399	1	0.04741	1	0.21349	1	0.88776	1	0.13488	1	0.61555	1	0.49069	1
amp_2p11.2	64 (25%)	193	0.00053999	0.194	0.0087599	1	0.91749	1	0.87679	1	1	1	0.31604	1	0.7672	1	0.99991	1
amp_3p12.1	69 (27%)	188	0.00017	0.067	0.00058999	0.211	6.9999e-05	0.0293	8.9999e-05	0.0371	0.50571	1	0.00339	1	0.00121	0.402	0.00237	0.751
amp_4q12	78 (30%)	179	0.00036	0.135	0.00012	0.0482	9.9999e-06	0.00528	0.00050999	0.185	0.055609	1	0.01342	1	0.04737	1	0.01952	1
amp_5p15.33	119 (46%)	138	9.9999e-06	0.00528	0.01294	1	0.02715	1	5e-04	0.182	0.34284	1	0.01339	1	0.68791	1	0.74707	1
amp_6p21.1	60 (23%)	197	3e-05	0.013	9.9999e-06	0.00528	0.00045	0.165	0.00012	0.0482	0.01834	1	0.0112	1	0.28855	1	0.04194	1
amp_6q25.1	75 (29%)	182	0.00023	0.0885	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	0.00059999	0.213	9.9999e-05	0.0407	0.00396	1	0.0081199	1
amp_7q31.2	77 (30%)	180	0.0065599	1	8.9999e-05	0.0371	9.9999e-05	0.0407	0.00188	0.605	0.00148	0.487	0.0457	1	5e-05	0.0212	0.00041	0.153
amp_8p11.22	81 (32%)	176	0.00091999	0.313	0.083499	1	0.00291	0.902	0.0362	1	0.15096	1	0.01035	1	0.42127	1	0.16412	1
amp_8q24.21	83 (32%)	174	0.0078199	1	0.04308	1	0.03384	1	0.2376	1	0.53891	1	0.29116	1	0.17447	1	0.34778	1
amp_11q22.2	36 (14%)	221	0.02689	1	0.02849	1	0.01293	1	0.053169	1	0.31618	1	0.00428	1	0.65145	1	0.054939	1
amp_12q15	94 (37%)	163	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528
amp_13q34	54 (21%)	203	0.00014	0.0557	0.01067	1	0.2186	1	0.03327	1	0.51151	1	0.14134	1	0.80293	1	0.0097699	1
amp_15q26.3	84 (33%)	173	9.9999e-06	0.00528	0.00422	1	0.84859	1	0.27843	1	0.81242	1	0.18355	1	0.87776	1	0.69702	1
amp_17p12	102 (40%)	155	9.9999e-06	0.00528	9.9999e-06	0.00528	0.0079499	1	9.9999e-05	0.0407	0.37283	1	0.00195	0.622	0.04663	1	0.0097699	1
amp_17p11.2	104 (40%)	153	9.9999e-06	0.00528	9.9999e-06	0.00528	0.0052599	1	0.00441	1	0.77849	1	0.00188	0.605	0.085239	1	0.0057799	1
amp_17q24.3	79 (31%)	178	0.00095999	0.325	0.00248	0.776	0.069079	1	0.00477	1	0.10619	1	0.15322	1	0.066009	1	0.25581	1
amp_19p13.2	107 (42%)	150	9.9999e-06	0.00528	0.01865	1	0.083509	1	0.04927	1	0.76011	1	0.26697	1	0.94609	1	0.081149	1
amp_19q12	93 (36%)	164	9.9999e-06	0.00528	6.9999e-05	0.0293	0.03174	1	0.0058099	1	0.69348	1	0.0093099	1	0.76892	1	0.02641	1
amp_20q13.33	98 (38%)	159	9.9999e-06	0.00528	5.9999e-05	0.0253	5.9999e-05	0.0253	0.00117	0.391	0.02876	1	0.00059999	0.213	0.01351	1	0.01203	1
amp_21q21.1	73 (28%)	184	9.9999e-06	0.00528	0.00078999	0.271	0.085159	1	0.24751	1	0.39656	1	0.14135	1	0.60322	1	0.37374	1
amp_xp21.2	97 (38%)	160	9.9999e-06	0.00528	0.00027	0.103	0.1157	1	0.0068799	1	0.9245	1	0.04051	1	0.30436	1	0.01089	1
amp_xq21.1	46 (18%)	211	0.00013	0.052	0.00050999	0.185	0.03961	1	0.02372	1	0.1088	1	0.40527	1	0.58925	1	0.58624	1
del_1p36.32	69 (27%)	188	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	0.00021	0.0817
del_1q44	80 (31%)	177	5e-05	0.0212	9.9999e-06	0.00528	3e-05	0.013	5.9999e-05	0.0253	0.01634	1	0.0070299	1	0.13806	1	0.0055399	1
del_2p25.3	94 (37%)	163	9.9999e-06	0.00528	3e-05	0.013	9.9999e-06	0.00528	0.00096999	0.328	0.00033	0.125	9.9999e-06	0.00528	0.00021	0.0817	0.00073999	0.258
del_2q37.3	108 (42%)	149	9.9999e-06	0.00528	0.0059999	1	0.01833	1	0.00039	0.146	0.20427	1	0.0063199	1	0.054769	1	0.04918	1
del_2q37.3	110 (43%)	147	9.9999e-06	0.00528	0.00097999	0.33	0.0081099	1	5e-04	0.182	0.63115	1	0.02464	1	0.47703	1	0.15647	1
del_3p21.31	65 (25%)	192	0.01011	1	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	0.00017	0.067	0.0079799	1	0.00186	0.601	9.9999e-06	0.00528
del_3q13.31	51 (20%)	206	0.0066499	1	0.00183	0.593	0.01151	1	0.01094	1	0.01773	1	0.0186	1	0.02163	1	0.03061	1
del_3q29	54 (21%)	203	0.00066999	0.236	0.00022	0.0851	0.19782	1	0.083889	1	0.30128	1	0.0384	1	0.21547	1	0.071009	1
del_4q35.1	94 (37%)	163	9.9999e-06	0.00528	0.00194	0.621	0.089719	1	0.04443	1	0.859	1	0.10806	1	1	1	0.55097	1
del_5p15.33	33 (13%)	224	0.24252	1	0.086819	1	0.00076999	0.266	0.00074999	0.26	0.13189	1	0.61139	1	0.04949	1	0.055219	1
del_6p25.3	81 (32%)	176	9.9999e-06	0.00528	0.00058999	0.211	0.00014	0.0557	0.00132	0.437	0.01442	1	0.02568	1	0.03587	1	0.27151	1
del_6q14.1	78 (30%)	179	0.0082399	1	0.00443	1	0.23077	1	0.56459	1	0.45329	1	0.59071	1	0.03683	1	0.96721	1
del_7q36.3	71 (28%)	186	2e-05	0.00876	0.062179	1	0.01737	1	0.15669	1	0.10827	1	0.0055399	1	0.085989	1	0.51416	1
del_8p23.3	81 (32%)	176	3e-05	0.013	9.9999e-06	0.00528	0.00058999	0.211	0.0022	0.7	0.0074599	1	0.00419	1	0.0092799	1	0.00106	0.356
del_9p24.3	100 (39%)	157	0.21456	1	0.73166	1	0.02343	1	0.43838	1	0.19776	1	0.91288	1	0.067079	1	0.80315	1
del_9p21.3	114 (44%)	143	0.03317	1	0.11076	1	0.00073999	0.258	0.0058199	1	0.02512	1	0.55663	1	6.9999e-05	0.0293	0.0016	0.525
del_9q34.3	61 (24%)	196	9.9999e-06	0.00528	0.00246	0.775	0.02536	1	0.13178	1	0.00268	0.836	0.00271	0.843	0.10467	1	0.04083	1
del_10p15.3	128 (50%)	129	9.9999e-06	0.00528	9.9999e-06	0.00528	0.36377	1	0.0090099	1	0.28441	1	0.01951	1	0.72701	1	0.56637	1
del_10q23.31	138 (54%)	119	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	0.00042	0.156	0.00041	0.153
del_10q26.3	132 (51%)	125	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	0.00014	0.0557	2e-05	0.00876	7.9999e-05	0.0331	0.00029	0.11
del_11p15.5	110 (43%)	147	9.9999e-06	0.00528	0.00053999	0.194	0.48739	1	0.14487	1	0.47696	1	0.31751	1	0.73711	1	0.75778	1
del_11q24.2	123 (48%)	134	9.9999e-06	0.00528	9.9999e-06	0.00528	0.00243	0.768	0.00134	0.442	0.054529	1	0.04066	1	0.37561	1	0.03288	1
del_12p13.1	87 (34%)	170	9.9999e-06	0.00528	0.00083999	0.286	0.03133	1	0.0053499	1	0.22707	1	0.03368	1	0.33019	1	0.32963	1
del_12q12	56 (22%)	201	8.9999e-05	0.0371	0.0087399	1	0.095339	1	0.01576	1	0.04462	1	0.03036	1	0.10782	1	0.39499	1
del_12q24.33	69 (27%)	188	7.9999e-05	0.0331	0.00167	0.546	0.72546	1	0.01708	1	0.24184	1	0.12508	1	0.15941	1	0.46442	1
del_13q14.2	180 (70%)	77	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	0.00024	0.0922	0.00022	0.0851
del_14q24.1	80 (31%)	177	9.9999e-06	0.00528	0.00077999	0.268	0.23529	1	9.9999e-06	0.00528	0.10807	1	0.00446	1	0.16232	1	0.02571	1
del_16q11.2	130 (51%)	127	9.9999e-06	0.00528	6.9999e-05	0.0293	0.00027	0.103	0.00067999	0.239	0.00303	0.936	3e-04	0.114	2e-05	0.00876	4e-05	0.0171
del_16q23.1	134 (52%)	123	9.9999e-06	0.00528	0.00044	0.162	0.00118	0.393	0.00354	1	0.0051099	1	0.00014	0.0557	9.9999e-06	0.00528	6.9999e-05	0.0293
del_17p13.1	129 (50%)	128	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	4e-05	0.0171	3e-05	0.013	4e-05	0.0171	3e-05	0.013	0.00076999	0.266
del_17q11.2	81 (32%)	176	9.9999e-05	0.0407	9.9999e-06	0.00528	2e-05	0.00876	0.00013	0.052	0.0090999	1	0.12212	1	0.01199	1	0.01625	1
del_17q25.3	67 (26%)	190	9.9999e-06	0.00528	0.0074199	1	0.19622	1	0.35881	1	0.6081	1	0.0078199	1	0.20713	1	0.1036	1
del_18q23	86 (33%)	171	0.0017	0.554	0.00017	0.067	9.9999e-06	0.00528	0.00349	1	0.01004	1	0.14584	1	0.1326	1	0.00035	0.132
del_19p13.3	70 (27%)	187	8.9999e-05	0.0371	0.00181	0.588	9.9999e-05	0.0407	0.00453	1	0.01826	1	0.00396	1	0.00114	0.382	0.01917	1
del_19q13.43	106 (41%)	151	9.9999e-06	0.00528	0.00038	0.142	0.39045	1	0.27566	1	0.38518	1	0.0333	1	0.43517	1	0.0076699	1
del_21q11.2	51 (20%)	206	0.00044	0.162	0.22043	1	0.03609	1	0.28187	1	0.00246	0.775	0.95467	1	0.068109	1	0.28758	1
del_21q22.3	66 (26%)	191	0.00474	1	0.0081999	1	0.0208	1	0.065419	1	0.43583	1	0.057159	1	0.43133	1	0.48034	1
del_22q13.32	83 (32%)	174	9.9999e-06	0.00528	0.062919	1	0.84496	1	0.03564	1	0.28663	1	0.43965	1	0.94555	1	0.53391	1
del_xp21.1	55 (21%)	202	0.00043	0.159	0.00060999	0.215	0.0101	1	0.02487	1	0.0085799	1	0.10035	1	0.31992	1	0.10912	1
del_xq21.1	114 (44%)	143	9.9999e-06	0.00528	9.9999e-06	0.00528	0.00033	0.125	0.00017	0.067	0.00019	0.0741	0.00049	0.179	0.02548	1	0.03033	1
del_xq22.3	123 (48%)	134	9.9999e-06	0.00528	9.9999e-06	0.00528	9.9999e-06	0.00528	2e-05	0.00876	0.00048	0.176	8.9999e-05	0.0371	0.01697	1	0.03379	1
