Clinical Features CN_CNMF METHLYATION_CNMF MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q amp_1p32.1 94 (37%) 163 0.00082999 0.284 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 0.0091399 1 0.00473 1 0.2109 1 0.00072999 0.255 amp_1q21.3 104 (40%) 153 9.9999e-06 0.00528 0.0079899 1 0.17369 1 0.091919 1 0.55437 1 0.13177 1 0.062429 1 0.24804 1 amp_1q24.3 102 (40%) 155 9.9999e-06 0.00528 0.0050399 1 0.04741 1 0.21349 1 0.88776 1 0.13488 1 0.61555 1 0.49069 1 amp_2p11.2 64 (25%) 193 0.00053999 0.194 0.0087599 1 0.91749 1 0.87679 1 1 1 0.31604 1 0.7672 1 0.99991 1 amp_3p12.1 69 (27%) 188 0.00017 0.067 0.00058999 0.211 6.9999e-05 0.0293 8.9999e-05 0.0371 0.50571 1 0.00339 1 0.00121 0.402 0.00237 0.751 amp_4q12 78 (30%) 179 0.00036 0.135 0.00012 0.0482 9.9999e-06 0.00528 0.00050999 0.185 0.055609 1 0.01342 1 0.04737 1 0.01952 1 amp_5p15.33 119 (46%) 138 9.9999e-06 0.00528 0.01294 1 0.02715 1 5e-04 0.182 0.34284 1 0.01339 1 0.68791 1 0.74707 1 amp_6p21.1 60 (23%) 197 3e-05 0.013 9.9999e-06 0.00528 0.00045 0.165 0.00012 0.0482 0.01834 1 0.0112 1 0.28855 1 0.04194 1 amp_6q25.1 75 (29%) 182 0.00023 0.0885 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 0.00059999 0.213 9.9999e-05 0.0407 0.00396 1 0.0081199 1 amp_7q31.2 77 (30%) 180 0.0065599 1 8.9999e-05 0.0371 9.9999e-05 0.0407 0.00188 0.605 0.00148 0.487 0.0457 1 5e-05 0.0212 0.00041 0.153 amp_8p11.22 81 (32%) 176 0.00091999 0.313 0.083499 1 0.00291 0.902 0.0362 1 0.15096 1 0.01035 1 0.42127 1 0.16412 1 amp_8q24.21 83 (32%) 174 0.0078199 1 0.04308 1 0.03384 1 0.2376 1 0.53891 1 0.29116 1 0.17447 1 0.34778 1 amp_11q22.2 36 (14%) 221 0.02689 1 0.02849 1 0.01293 1 0.053169 1 0.31618 1 0.00428 1 0.65145 1 0.054939 1 amp_12q15 94 (37%) 163 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 amp_13q34 54 (21%) 203 0.00014 0.0557 0.01067 1 0.2186 1 0.03327 1 0.51151 1 0.14134 1 0.80293 1 0.0097699 1 amp_15q26.3 84 (33%) 173 9.9999e-06 0.00528 0.00422 1 0.84859 1 0.27843 1 0.81242 1 0.18355 1 0.87776 1 0.69702 1 amp_17p12 102 (40%) 155 9.9999e-06 0.00528 9.9999e-06 0.00528 0.0079499 1 9.9999e-05 0.0407 0.37283 1 0.00195 0.622 0.04663 1 0.0097699 1 amp_17p11.2 104 (40%) 153 9.9999e-06 0.00528 9.9999e-06 0.00528 0.0052599 1 0.00441 1 0.77849 1 0.00188 0.605 0.085239 1 0.0057799 1 amp_17q24.3 79 (31%) 178 0.00095999 0.325 0.00248 0.776 0.069079 1 0.00477 1 0.10619 1 0.15322 1 0.066009 1 0.25581 1 amp_19p13.2 107 (42%) 150 9.9999e-06 0.00528 0.01865 1 0.083509 1 0.04927 1 0.76011 1 0.26697 1 0.94609 1 0.081149 1 amp_19q12 93 (36%) 164 9.9999e-06 0.00528 6.9999e-05 0.0293 0.03174 1 0.0058099 1 0.69348 1 0.0093099 1 0.76892 1 0.02641 1 amp_20q13.33 98 (38%) 159 9.9999e-06 0.00528 5.9999e-05 0.0253 5.9999e-05 0.0253 0.00117 0.391 0.02876 1 0.00059999 0.213 0.01351 1 0.01203 1 amp_21q21.1 73 (28%) 184 9.9999e-06 0.00528 0.00078999 0.271 0.085159 1 0.24751 1 0.39656 1 0.14135 1 0.60322 1 0.37374 1 amp_xp21.2 97 (38%) 160 9.9999e-06 0.00528 0.00027 0.103 0.1157 1 0.0068799 1 0.9245 1 0.04051 1 0.30436 1 0.01089 1 amp_xq21.1 46 (18%) 211 0.00013 0.052 0.00050999 0.185 0.03961 1 0.02372 1 0.1088 1 0.40527 1 0.58925 1 0.58624 1 del_1p36.32 69 (27%) 188 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 0.00021 0.0817 del_1q44 80 (31%) 177 5e-05 0.0212 9.9999e-06 0.00528 3e-05 0.013 5.9999e-05 0.0253 0.01634 1 0.0070299 1 0.13806 1 0.0055399 1 del_2p25.3 94 (37%) 163 9.9999e-06 0.00528 3e-05 0.013 9.9999e-06 0.00528 0.00096999 0.328 0.00033 0.125 9.9999e-06 0.00528 0.00021 0.0817 0.00073999 0.258 del_2q37.3 108 (42%) 149 9.9999e-06 0.00528 0.0059999 1 0.01833 1 0.00039 0.146 0.20427 1 0.0063199 1 0.054769 1 0.04918 1 del_2q37.3 110 (43%) 147 9.9999e-06 0.00528 0.00097999 0.33 0.0081099 1 5e-04 0.182 0.63115 1 0.02464 1 0.47703 1 0.15647 1 del_3p21.31 65 (25%) 192 0.01011 1 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 0.00017 0.067 0.0079799 1 0.00186 0.601 9.9999e-06 0.00528 del_3q13.31 51 (20%) 206 0.0066499 1 0.00183 0.593 0.01151 1 0.01094 1 0.01773 1 0.0186 1 0.02163 1 0.03061 1 del_3q29 54 (21%) 203 0.00066999 0.236 0.00022 0.0851 0.19782 1 0.083889 1 0.30128 1 0.0384 1 0.21547 1 0.071009 1 del_4q35.1 94 (37%) 163 9.9999e-06 0.00528 0.00194 0.621 0.089719 1 0.04443 1 0.859 1 0.10806 1 1 1 0.55097 1 del_5p15.33 33 (13%) 224 0.24252 1 0.086819 1 0.00076999 0.266 0.00074999 0.26 0.13189 1 0.61139 1 0.04949 1 0.055219 1 del_6p25.3 81 (32%) 176 9.9999e-06 0.00528 0.00058999 0.211 0.00014 0.0557 0.00132 0.437 0.01442 1 0.02568 1 0.03587 1 0.27151 1 del_6q14.1 78 (30%) 179 0.0082399 1 0.00443 1 0.23077 1 0.56459 1 0.45329 1 0.59071 1 0.03683 1 0.96721 1 del_7q36.3 71 (28%) 186 2e-05 0.00876 0.062179 1 0.01737 1 0.15669 1 0.10827 1 0.0055399 1 0.085989 1 0.51416 1 del_8p23.3 81 (32%) 176 3e-05 0.013 9.9999e-06 0.00528 0.00058999 0.211 0.0022 0.7 0.0074599 1 0.00419 1 0.0092799 1 0.00106 0.356 del_9p24.3 100 (39%) 157 0.21456 1 0.73166 1 0.02343 1 0.43838 1 0.19776 1 0.91288 1 0.067079 1 0.80315 1 del_9p21.3 114 (44%) 143 0.03317 1 0.11076 1 0.00073999 0.258 0.0058199 1 0.02512 1 0.55663 1 6.9999e-05 0.0293 0.0016 0.525 del_9q34.3 61 (24%) 196 9.9999e-06 0.00528 0.00246 0.775 0.02536 1 0.13178 1 0.00268 0.836 0.00271 0.843 0.10467 1 0.04083 1 del_10p15.3 128 (50%) 129 9.9999e-06 0.00528 9.9999e-06 0.00528 0.36377 1 0.0090099 1 0.28441 1 0.01951 1 0.72701 1 0.56637 1 del_10q23.31 138 (54%) 119 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 0.00042 0.156 0.00041 0.153 del_10q26.3 132 (51%) 125 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 0.00014 0.0557 2e-05 0.00876 7.9999e-05 0.0331 0.00029 0.11 del_11p15.5 110 (43%) 147 9.9999e-06 0.00528 0.00053999 0.194 0.48739 1 0.14487 1 0.47696 1 0.31751 1 0.73711 1 0.75778 1 del_11q24.2 123 (48%) 134 9.9999e-06 0.00528 9.9999e-06 0.00528 0.00243 0.768 0.00134 0.442 0.054529 1 0.04066 1 0.37561 1 0.03288 1 del_12p13.1 87 (34%) 170 9.9999e-06 0.00528 0.00083999 0.286 0.03133 1 0.0053499 1 0.22707 1 0.03368 1 0.33019 1 0.32963 1 del_12q12 56 (22%) 201 8.9999e-05 0.0371 0.0087399 1 0.095339 1 0.01576 1 0.04462 1 0.03036 1 0.10782 1 0.39499 1 del_12q24.33 69 (27%) 188 7.9999e-05 0.0331 0.00167 0.546 0.72546 1 0.01708 1 0.24184 1 0.12508 1 0.15941 1 0.46442 1 del_13q14.2 180 (70%) 77 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 0.00024 0.0922 0.00022 0.0851 del_14q24.1 80 (31%) 177 9.9999e-06 0.00528 0.00077999 0.268 0.23529 1 9.9999e-06 0.00528 0.10807 1 0.00446 1 0.16232 1 0.02571 1 del_16q11.2 130 (51%) 127 9.9999e-06 0.00528 6.9999e-05 0.0293 0.00027 0.103 0.00067999 0.239 0.00303 0.936 3e-04 0.114 2e-05 0.00876 4e-05 0.0171 del_16q23.1 134 (52%) 123 9.9999e-06 0.00528 0.00044 0.162 0.00118 0.393 0.00354 1 0.0051099 1 0.00014 0.0557 9.9999e-06 0.00528 6.9999e-05 0.0293 del_17p13.1 129 (50%) 128 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 4e-05 0.0171 3e-05 0.013 4e-05 0.0171 3e-05 0.013 0.00076999 0.266 del_17q11.2 81 (32%) 176 9.9999e-05 0.0407 9.9999e-06 0.00528 2e-05 0.00876 0.00013 0.052 0.0090999 1 0.12212 1 0.01199 1 0.01625 1 del_17q25.3 67 (26%) 190 9.9999e-06 0.00528 0.0074199 1 0.19622 1 0.35881 1 0.6081 1 0.0078199 1 0.20713 1 0.1036 1 del_18q23 86 (33%) 171 0.0017 0.554 0.00017 0.067 9.9999e-06 0.00528 0.00349 1 0.01004 1 0.14584 1 0.1326 1 0.00035 0.132 del_19p13.3 70 (27%) 187 8.9999e-05 0.0371 0.00181 0.588 9.9999e-05 0.0407 0.00453 1 0.01826 1 0.00396 1 0.00114 0.382 0.01917 1 del_19q13.43 106 (41%) 151 9.9999e-06 0.00528 0.00038 0.142 0.39045 1 0.27566 1 0.38518 1 0.0333 1 0.43517 1 0.0076699 1 del_21q11.2 51 (20%) 206 0.00044 0.162 0.22043 1 0.03609 1 0.28187 1 0.00246 0.775 0.95467 1 0.068109 1 0.28758 1 del_21q22.3 66 (26%) 191 0.00474 1 0.0081999 1 0.0208 1 0.065419 1 0.43583 1 0.057159 1 0.43133 1 0.48034 1 del_22q13.32 83 (32%) 174 9.9999e-06 0.00528 0.062919 1 0.84496 1 0.03564 1 0.28663 1 0.43965 1 0.94555 1 0.53391 1 del_xp21.1 55 (21%) 202 0.00043 0.159 0.00060999 0.215 0.0101 1 0.02487 1 0.0085799 1 0.10035 1 0.31992 1 0.10912 1 del_xq21.1 114 (44%) 143 9.9999e-06 0.00528 9.9999e-06 0.00528 0.00033 0.125 0.00017 0.067 0.00019 0.0741 0.00049 0.179 0.02548 1 0.03033 1 del_xq22.3 123 (48%) 134 9.9999e-06 0.00528 9.9999e-06 0.00528 9.9999e-06 0.00528 2e-05 0.00876 0.00048 0.176 8.9999e-05 0.0371 0.01697 1 0.03379 1