Clinical Features CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 87 (24%) 279 0.13403 1 0.12589 1 0.7975 1 0.97821 1 0.87116 1 0.75137 1 0.5692 1 0.92313 1 0.80141 1 0.49455 1 1q gain 171 (47%) 195 9.9999e-06 0.00796 0.59155 1 0.27049 1 0.50998 1 0.01757 1 0.13755 1 0.12415 1 0.31628 1 0.04709 1 0.28525 1 2p gain 67 (18%) 299 0.01148 1 0.36716 1 0.80114 1 0.81289 1 0.00162 1 0.00418 1 0.10468 1 0.00012 0.093 0.03844 1 0.0277 1 2q gain 65 (18%) 301 0.0081799 1 0.46489 1 0.77486 1 0.34411 1 2e-04 0.154 0.00209 1 0.13788 1 4e-05 0.0312 0.052589 1 0.00236 1 3p gain 63 (17%) 303 0.21973 1 0.22381 1 0.04514 1 0.02091 1 0.4274 1 0.73206 1 0.33316 1 0.55809 1 0.75457 1 0.97604 1 3q gain 72 (20%) 294 0.5634 1 0.4146 1 0.01867 1 0.04548 1 0.04861 1 0.39585 1 0.13502 1 0.52924 1 0.20134 1 0.61775 1 4p gain 56 (15%) 310 0.00201 1 0.25288 1 0.30506 1 0.8574 1 0.56933 1 0.56314 1 0.30344 1 0.04613 1 0.72863 1 0.56372 1 4q gain 47 (13%) 319 0.01176 1 0.29021 1 0.26391 1 0.93529 1 0.26574 1 0.74737 1 0.68915 1 0.04188 1 0.77305 1 0.94271 1 5p gain 76 (21%) 290 0.00054999 0.419 0.12922 1 0.89034 1 0.39722 1 0.17211 1 0.28368 1 0.087469 1 0.49874 1 0.98445 1 0.097299 1 5q gain 52 (14%) 314 0.01052 1 0.12865 1 0.35987 1 0.13841 1 0.96471 1 1 1 0.10312 1 0.52191 1 0.33374 1 0.071409 1 6p gain 144 (39%) 222 0.00052999 0.404 5.9999e-05 0.0466 0.98794 1 0.14374 1 0.22298 1 0.15212 1 0.0021 1 0.057309 1 0.00041 0.314 0.00169 1 6q gain 48 (13%) 318 0.3091 1 0.4916 1 0.85897 1 0.33098 1 0.92383 1 0.5068 1 0.35623 1 0.40405 1 0.83524 1 0.64407 1 7p gain 203 (55%) 163 9.9999e-06 0.00796 0.90961 1 0.46058 1 0.37347 1 0.02365 1 0.10353 1 0.074039 1 0.73838 1 0.17375 1 0.56939 1 7q gain 200 (55%) 166 3e-05 0.0234 0.87709 1 0.69333 1 0.51874 1 0.0088599 1 0.04884 1 0.68466 1 0.56981 1 0.0088899 1 0.3005 1 8p gain 121 (33%) 245 9.9999e-06 0.00796 0.2248 1 0.61091 1 0.84202 1 0.01692 1 0.01338 1 0.52322 1 0.84365 1 0.8524 1 0.44028 1 8q gain 169 (46%) 197 9.9999e-06 0.00796 0.00212 1 0.69457 1 0.79685 1 0.00414 1 0.0434 1 0.62632 1 0.89119 1 0.80704 1 0.37543 1 9p gain 16 (4%) 350 0.3064 1 0.20261 1 0.37682 1 0.8365 1 0.34397 1 0.54723 1 0.90321 1 0.60795 1 0.12794 1 0.262 1 9q gain 21 (6%) 345 0.66449 1 0.65629 1 0.13522 1 0.92914 1 0.53671 1 0.29539 1 0.88609 1 0.41735 1 0.48007 1 0.55332 1 10p gain 12 (3%) 354 0.4989 1 0.93201 1 0.86614 1 0.54824 1 0.70481 1 0.92988 1 0.26045 1 0.55737 1 1 1 0.90587 1 10q gain 3 (1%) 363 0.37765 1 0.359 1 NA NA NA NA 0.63079 1 1 1 0.77743 1 0.72053 1 0.26882 1 0.69065 1 11p gain 35 (10%) 331 0.0063399 1 0.087389 1 0.086489 1 0.18676 1 0.00185 1 0.053979 1 0.02404 1 0.0062799 1 0.23012 1 0.01802 1 11q gain 29 (8%) 337 0.00021 0.161 0.1647 1 0.075769 1 0.087239 1 0.01195 1 0.02178 1 0.0061199 1 0.00081999 0.619 0.056799 1 0.01327 1 12p gain 65 (18%) 301 0.00080999 0.612 0.18002 1 0.53845 1 0.4257 1 0.00467 1 0.29538 1 0.87298 1 0.49195 1 0.16484 1 0.36809 1 12q gain 39 (11%) 327 0.01629 1 0.93099 1 0.61792 1 0.057029 1 0.34227 1 0.27445 1 0.81813 1 0.061079 1 0.42155 1 0.6781 1 13q gain 94 (26%) 272 9.9999e-06 0.00796 9.9999e-06 0.00796 0.4587 1 0.31303 1 0.00050999 0.389 0.23051 1 0.49815 1 0.83934 1 0.089569 1 0.68439 1 14q gain 41 (11%) 325 0.39357 1 0.32795 1 0.34825 1 0.1563 1 0.9344 1 0.90794 1 0.51056 1 0.50576 1 0.76432 1 0.96615 1 15q gain 85 (23%) 281 4e-05 0.0312 0.17616 1 0.94484 1 0.81735 1 0.0092199 1 0.0059699 1 0.1919 1 0.17195 1 0.37517 1 0.056499 1 16p gain 58 (16%) 308 0.00162 1 0.01729 1 0.98733 1 0.65822 1 0.00062999 0.478 0.054049 1 0.78167 1 0.074199 1 0.071599 1 0.12291 1 16q gain 44 (12%) 322 0.00028 0.215 0.02279 1 0.27373 1 0.62773 1 9.9999e-06 0.00796 0.0016 1 0.78493 1 0.1013 1 0.054019 1 0.14862 1 17p gain 37 (10%) 329 0.0092399 1 0.00163 1 0.58143 1 0.52836 1 0.11789 1 0.10051 1 0.57012 1 0.29556 1 0.97502 1 0.13917 1 17q gain 65 (18%) 301 0.052089 1 0.055629 1 0.10379 1 0.27582 1 0.8833 1 0.56863 1 0.47695 1 0.6706 1 0.55582 1 0.76426 1 18p gain 55 (15%) 311 0.00216 1 0.61575 1 0.21046 1 0.38719 1 0.20167 1 0.59895 1 0.93313 1 0.9662 1 0.060619 1 0.46913 1 18q gain 44 (12%) 322 0.00073999 0.56 0.70817 1 0.35153 1 0.4666 1 0.30435 1 0.60181 1 0.6751 1 0.76961 1 0.64614 1 0.79629 1 19p gain 57 (16%) 309 0.00489 1 0.04925 1 0.2482 1 0.79916 1 0.00055999 0.426 0.01123 1 0.90777 1 0.5418 1 0.17237 1 0.90061 1 19q gain 56 (15%) 310 0.01122 1 0.04109 1 0.29212 1 1 1 9.9999e-06 0.00796 0.0076699 1 0.52274 1 0.43108 1 0.15371 1 0.85321 1 20p gain 147 (40%) 219 9.9999e-06 0.00796 0.01145 1 0.84285 1 0.98514 1 0.00017 0.131 0.02078 1 0.48665 1 0.26724 1 0.27165 1 0.065919 1 20q gain 179 (49%) 187 9.9999e-06 0.00796 0.01977 1 0.94099 1 0.97394 1 0.00364 1 0.12355 1 0.47799 1 0.25916 1 0.91354 1 0.27995 1 21q gain 67 (18%) 299 0.16518 1 0.052209 1 0.88872 1 0.53084 1 0.25161 1 0.76254 1 0.11001 1 0.99683 1 0.94925 1 0.50845 1 22q gain 126 (34%) 240 0.00033 0.253 0.16571 1 0.89272 1 0.94542 1 0.087509 1 0.1193 1 0.61507 1 0.16065 1 0.70119 1 0.50096 1 xq gain 42 (11%) 324 6.9999e-05 0.0543 0.00036 0.276 0.58432 1 0.98611 1 0.00484 1 0.01549 1 0.43979 1 0.34798 1 0.00019 0.147 0.64689 1 1p loss 53 (14%) 313 0.04908 1 0.00019 0.147 0.58743 1 0.31299 1 0.01409 1 0.004 1 0.0092199 1 0.69285 1 0.17761 1 0.055159 1 1q loss 28 (8%) 338 0.064519 1 0.0225 1 0.96808 1 0.46222 1 0.16349 1 0.092869 1 0.36808 1 0.93856 1 0.28356 1 0.35723 1 2p loss 51 (14%) 315 0.37245 1 0.29163 1 0.04734 1 0.01508 1 0.84467 1 0.26028 1 0.0029 1 0.063299 1 0.22436 1 0.21113 1 2q loss 52 (14%) 314 0.81567 1 0.27776 1 0.01055 1 0.00195 1 0.55613 1 0.18398 1 0.0083499 1 0.11693 1 0.17046 1 0.22557 1 3p loss 61 (17%) 305 0.061049 1 0.85975 1 0.49314 1 0.32779 1 0.22797 1 0.33055 1 0.059959 1 0.65974 1 0.5188 1 0.4082 1 3q loss 53 (14%) 313 0.04736 1 0.079589 1 0.51547 1 0.37417 1 0.26706 1 0.40856 1 0.12579 1 0.63262 1 0.33109 1 0.76822 1 4p loss 80 (22%) 286 0.52774 1 0.17573 1 0.35157 1 0.9687 1 0.10528 1 0.073969 1 0.54375 1 0.0134 1 0.87891 1 0.31771 1 4q loss 85 (23%) 281 0.52901 1 0.063539 1 0.48325 1 0.7492 1 0.13908 1 0.04795 1 0.90272 1 0.0055599 1 0.60374 1 0.24207 1 5p loss 79 (22%) 287 0.85018 1 0.11101 1 0.88161 1 0.86001 1 0.68632 1 0.66823 1 0.51333 1 0.25966 1 0.20672 1 0.38901 1 5q loss 99 (27%) 267 0.59139 1 0.03929 1 0.65116 1 0.36412 1 0.75076 1 0.2502 1 0.90677 1 0.57814 1 0.41844 1 0.60813 1 6p loss 68 (19%) 298 0.0054799 1 0.52581 1 0.87369 1 0.27609 1 0.01059 1 0.02975 1 0.04194 1 0.090569 1 0.0257 1 0.02751 1 6q loss 172 (47%) 194 9.9999e-06 0.00796 0.01854 1 0.97789 1 0.48299 1 0.00412 1 0.03175 1 0.21882 1 0.21503 1 0.40365 1 0.16188 1 7p loss 18 (5%) 348 0.83044 1 0.057179 1 0.095819 1 0.56064 1 0.49543 1 0.9473 1 0.65299 1 0.70949 1 0.16967 1 0.74902 1 7q loss 17 (5%) 349 0.36108 1 0.01037 1 0.33938 1 0.43792 1 0.42508 1 0.48835 1 0.52323 1 0.77142 1 0.095749 1 0.92557 1 8p loss 67 (18%) 299 0.12471 1 0.48592 1 0.058269 1 0.29402 1 0.092849 1 0.95325 1 0.45821 1 0.02967 1 0.43941 1 0.18214 1 8q loss 27 (7%) 339 0.52008 1 0.0084499 1 0.31911 1 0.53652 1 0.27451 1 0.7869 1 0.40845 1 0.50434 1 0.01461 1 0.14743 1 9p loss 236 (64%) 130 0.00013 0.101 0.1057 1 0.64755 1 0.45028 1 0.0055699 1 0.12344 1 0.075869 1 0.21818 1 0.73737 1 0.59044 1 9q loss 185 (51%) 181 0.27236 1 0.054749 1 0.99224 1 0.15 1 0.03847 1 0.80766 1 0.04009 1 0.13759 1 0.96954 1 0.46572 1 10p loss 204 (56%) 162 9.9999e-06 0.00796 0.15132 1 0.92288 1 0.41085 1 0.00094999 0.715 0.0053199 1 0.061339 1 0.34496 1 0.36901 1 0.55989 1 10q loss 224 (61%) 142 9.9999e-06 0.00796 0.2372 1 0.91862 1 0.2007 1 5e-05 0.0389 0.00048 0.367 0.02103 1 0.36471 1 0.33216 1 0.49996 1 11p loss 126 (34%) 240 0.01818 1 0.0474 1 0.58494 1 0.29434 1 0.5858 1 0.61673 1 0.52467 1 0.33731 1 0.084369 1 0.56764 1 11q loss 148 (40%) 218 0.01248 1 0.30946 1 0.95225 1 0.6997 1 0.34892 1 0.41413 1 0.7404 1 0.15735 1 0.075129 1 0.54669 1 12p loss 59 (16%) 307 0.22097 1 0.11524 1 0.85546 1 0.87183 1 0.01862 1 0.623 1 0.12477 1 0.43539 1 0.98202 1 0.5793 1 12q loss 67 (18%) 299 0.03397 1 0.01241 1 0.98252 1 0.87361 1 0.12547 1 0.379 1 0.13346 1 0.50002 1 0.4495 1 0.69605 1 13q loss 80 (22%) 286 0.93704 1 0.01916 1 0.066089 1 0.55971 1 0.56318 1 0.40224 1 0.79971 1 0.2019 1 0.32301 1 0.46982 1 14q loss 112 (31%) 254 2e-05 0.0156 0.44012 1 0.4127 1 0.26818 1 0.0103 1 0.059269 1 0.0052699 1 0.21247 1 0.33492 1 0.23763 1 15q loss 52 (14%) 314 0.18281 1 0.28471 1 0.28564 1 0.061959 1 0.65037 1 0.11759 1 0.64497 1 0.42114 1 0.29043 1 0.45815 1 16p loss 68 (19%) 298 0.20531 1 0.1053 1 0.062879 1 0.36271 1 0.05 1 0.52015 1 0.2335 1 0.19441 1 0.13445 1 0.30199 1 16q loss 106 (29%) 260 0.30255 1 0.34532 1 0.01584 1 0.7563 1 0.01875 1 0.11995 1 0.32725 1 0.10482 1 0.067819 1 0.18437 1 17p loss 127 (35%) 239 0.077209 1 0.0063699 1 0.4459 1 0.51195 1 0.20383 1 0.14577 1 0.87879 1 0.51814 1 0.62219 1 0.44413 1 17q loss 64 (17%) 302 0.14247 1 0.14138 1 0.12945 1 0.5445 1 0.80038 1 0.18385 1 0.50798 1 0.87141 1 0.061429 1 1 1 18p loss 104 (28%) 262 0.73017 1 0.58691 1 0.37652 1 0.51241 1 0.02302 1 0.36647 1 0.02725 1 0.39087 1 0.54487 1 0.15188 1 18q loss 100 (27%) 266 0.44592 1 0.81881 1 0.29582 1 0.48779 1 0.39277 1 0.84712 1 0.75001 1 0.23154 1 0.56074 1 0.17817 1 19p loss 77 (21%) 289 0.072409 1 0.60316 1 0.78434 1 0.03504 1 0.11686 1 0.78581 1 0.57189 1 0.88691 1 0.23808 1 0.51316 1 19q loss 73 (20%) 293 0.02425 1 0.052909 1 0.97865 1 0.082229 1 0.052319 1 0.53806 1 0.48609 1 0.98871 1 0.054669 1 0.52929 1 20p loss 26 (7%) 340 0.36972 1 0.66172 1 0.23619 1 0.77223 1 0.28153 1 0.053779 1 0.13445 1 0.01726 1 0.89028 1 0.1866 1 20q loss 9 (2%) 357 0.3994 1 0.18317 1 NA NA NA NA 0.076269 1 0.0072899 1 0.68544 1 0.55687 1 0.36219 1 0.68555 1 21q loss 70 (19%) 296 0.099629 1 0.31114 1 0.47101 1 0.93032 1 0.80271 1 0.32708 1 0.33486 1 0.74625 1 0.59261 1 0.76826 1 22q loss 39 (11%) 327 0.40261 1 0.40744 1 0.95459 1 0.93981 1 0.17866 1 0.65795 1 0.86672 1 0.70073 1 0.70833 1 0.77275 1 xq loss 94 (26%) 272 0.02756 1 9.9999e-06 0.00796 0.2391 1 0.077079 1 0.00093999 0.709 0.00061999 0.471 0.055409 1 0.68226 1 0.02474 1 0.68677 1