Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p12	121 (33%)	245	0.03568	1	0.88079	1	0.70777	1	0.88163	1	0.27499	1	0.3828	1	0.61962	1	0.52668	1	0.77934	1	0.61308	1
amp_1q21.3	203 (55%)	163	9.9999e-06	0.0055	0.056079	1	0.33768	1	0.52379	1	0.00207	1	0.2176	1	0.02378	1	0.060589	1	0.17245	1	0.082619	1
amp_1q44	201 (55%)	165	9.9999e-06	0.0055	0.0072199	1	0.16177	1	0.14141	1	0.0052599	1	0.1184	1	0.00445	1	0.0057499	1	0.01944	1	0.00221	1
amp_3p13	103 (28%)	263	0.12253	1	0.49934	1	0.065139	1	0.053079	1	0.58054	1	0.26013	1	0.47987	1	0.66966	1	0.84097	1	0.87103	1
amp_4q12	65 (18%)	301	0.00296	1	0.15569	1	0.080799	1	0.5353	1	0.81689	1	0.18347	1	0.061429	1	0.02897	1	0.27527	1	0.50954	1
amp_5p15.33	110 (30%)	256	2e-05	0.0105	0.11043	1	0.69154	1	0.73967	1	0.081829	1	0.59016	1	0.00478	1	0.73736	1	0.24881	1	0.02419	1
amp_5q35.3	59 (16%)	307	2e-04	0.104	0.00032	0.165	0.091269	1	0.03428	1	0.01568	1	0.2011	1	0.26933	1	0.35092	1	0.35211	1	0.46025	1
amp_6p24.3	210 (57%)	156	9.9999e-06	0.0055	2e-05	0.0105	0.32281	1	0.01655	1	0.02821	1	0.03271	1	0.00084999	0.43	0.01671	1	0.00092999	0.467	0.00165	0.82
amp_6q12	80 (22%)	286	0.54848	1	0.53502	1	0.52737	1	0.081379	1	0.51524	1	0.20387	1	0.2137	1	0.16728	1	0.35039	1	0.10543	1
amp_7p22.1	208 (57%)	158	9.9999e-06	0.0055	0.78129	1	0.62953	1	0.21545	1	0.0192	1	0.02267	1	0.073169	1	0.41025	1	0.91231	1	0.47527	1
amp_7q34	224 (61%)	142	2e-05	0.0105	0.42646	1	0.23745	1	0.93834	1	0.13932	1	0.094599	1	0.096509	1	0.25955	1	0.078799	1	0.41881	1
amp_8q11.21	163 (45%)	203	9.9999e-06	0.0055	0.00262	1	0.57321	1	0.24467	1	0.01841	1	0.00468	1	0.83404	1	0.8576	1	0.76069	1	0.74349	1
amp_8q24.21	191 (52%)	175	9.9999e-06	0.0055	0.0060599	1	0.75318	1	0.93575	1	0.01219	1	0.056209	1	0.80235	1	0.75066	1	0.61741	1	0.76704	1
amp_11q13.3	69 (19%)	297	0.12636	1	0.080779	1	0.907	1	0.83971	1	0.18035	1	0.7813	1	0.15843	1	0.11127	1	0.55759	1	0.2475	1
amp_12q14.1	58 (16%)	308	0.00314	1	0.36044	1	0.87004	1	0.28717	1	0.02286	1	0.098759	1	0.76909	1	0.21457	1	0.17107	1	0.64419	1
amp_12q15	59 (16%)	307	0.074239	1	0.13982	1	0.60906	1	0.42667	1	0.04738	1	0.01362	1	0.66284	1	0.29253	1	0.36968	1	0.31498	1
amp_13q31.3	104 (28%)	262	9.9999e-06	0.0055	9.9999e-06	0.0055	0.75511	1	0.27034	1	0.00023	0.119	0.053559	1	0.68039	1	0.51777	1	0.057509	1	0.79086	1
amp_15q26.2	119 (33%)	247	0.00052999	0.271	0.18225	1	0.93727	1	0.80818	1	0.13077	1	0.24526	1	0.80813	1	0.23716	1	0.16355	1	0.44255	1
amp_17q25.3	122 (33%)	244	0.00015	0.078	0.04578	1	0.02944	1	0.074909	1	0.41206	1	0.089379	1	0.56225	1	0.066599	1	0.23928	1	0.19533	1
amp_19p13.2	69 (19%)	297	0.00080999	0.411	0.13123	1	0.44303	1	0.95702	1	0.00171	0.848	0.01618	1	0.95085	1	0.28521	1	0.13177	1	0.73813	1
amp_20q13.33	187 (51%)	179	9.9999e-06	0.0055	0.00202	1	0.82661	1	0.98907	1	0.0051199	1	0.058889	1	0.17919	1	0.5884	1	0.79716	1	0.36582	1
amp_22q13.2	151 (41%)	215	3e-05	0.0157	0.059309	1	0.97292	1	0.71574	1	0.3363	1	0.32396	1	0.80835	1	0.086219	1	0.26026	1	0.31628	1
del_1p36.31	81 (22%)	285	0.03592	1	9.9999e-06	0.0055	0.58046	1	0.20972	1	0.02537	1	0.0096699	1	0.062009	1	0.060299	1	0.40425	1	0.85701	1
del_1p22.1	97 (27%)	269	0.00090999	0.459	9.9999e-06	0.0055	0.58843	1	0.20848	1	8.9999e-05	0.047	0.00021	0.109	0.077879	1	0.76843	1	0.19515	1	0.25575	1
del_2q37.3	93 (25%)	273	0.42039	1	0.13589	1	0.16674	1	0.02003	1	0.0059799	1	0.0064399	1	0.03148	1	0.0094299	1	0.26283	1	0.30774	1
del_3p25.1	71 (19%)	295	0.17482	1	0.24396	1	0.42332	1	0.21582	1	0.79331	1	0.54243	1	0.35622	1	0.3949	1	0.32222	1	0.16941	1
del_3q13.31	62 (17%)	304	0.16243	1	0.068289	1	0.4077	1	0.11558	1	0.02078	1	0.34499	1	0.25421	1	0.27919	1	0.078029	1	0.54977	1
del_4p16.3	91 (25%)	275	0.54882	1	0.091539	1	0.65033	1	0.70751	1	0.12887	1	0.03772	1	0.66567	1	0.25085	1	0.43138	1	0.98165	1
del_4q34.3	110 (30%)	256	0.26667	1	0.056029	1	0.51601	1	0.55516	1	0.080169	1	0.01938	1	0.67868	1	0.0091599	1	0.12184	1	0.17403	1
del_5p15.31	79 (22%)	287	0.65017	1	0.39136	1	0.54772	1	0.54139	1	0.53964	1	0.2568	1	0.67534	1	0.36389	1	0.091319	1	0.90423	1
del_5q12.1	97 (27%)	269	0.23389	1	0.29193	1	0.38814	1	0.11487	1	0.39555	1	0.14388	1	0.30099	1	0.52401	1	0.33977	1	0.65178	1
del_5q31.3	131 (36%)	235	0.27503	1	0.00149	0.745	0.62165	1	0.30313	1	0.71036	1	0.33735	1	0.83168	1	0.63811	1	0.39081	1	0.4744	1
del_6q22.31	215 (59%)	151	9.9999e-06	0.0055	0.0082899	1	0.95913	1	0.44559	1	0.00058999	0.301	0.11718	1	0.47965	1	0.53355	1	0.46898	1	0.26997	1
del_6q26	221 (60%)	145	9.9999e-06	0.0055	0.01074	1	0.83836	1	0.53886	1	0.00039	0.2	0.02832	1	0.3232	1	0.60367	1	0.83659	1	0.45525	1
del_8p23.3	89 (24%)	277	0.0090999	1	0.077649	1	0.20694	1	0.15911	1	0.04394	1	0.72535	1	0.37238	1	0.2525	1	0.084829	1	0.081859	1
del_9p23	249 (68%)	117	9.9999e-06	0.0055	0.086869	1	0.45538	1	0.61175	1	0.0096199	1	0.19311	1	0.03445	1	0.1684	1	0.82415	1	0.15612	1
del_9p21.3	278 (76%)	88	9.9999e-06	0.0055	0.0070799	1	0.75352	1	0.7019	1	2e-05	0.0105	0.0059699	1	0.03484	1	0.79687	1	0.4122	1	0.11976	1
del_10p15.3	199 (54%)	167	9.9999e-06	0.0055	0.04003	1	0.88391	1	0.21938	1	0.00061999	0.316	0.00163	0.812	0.071099	1	0.45567	1	0.33051	1	0.27189	1
del_10q21.1	217 (59%)	149	9.9999e-06	0.0055	0.4933	1	0.71303	1	0.14912	1	0.01131	1	0.02239	1	0.062049	1	0.25095	1	0.22651	1	0.76182	1
del_10q23.31	230 (63%)	136	9.9999e-06	0.0055	0.14403	1	0.8817	1	0.2076	1	0.00259	1	0.00157	0.783	0.03064	1	0.6871	1	0.34295	1	0.77464	1
del_10q26.3	236 (64%)	130	9.9999e-06	0.0055	0.43498	1	0.83435	1	0.30549	1	0.00012	0.0625	0.00091999	0.463	0.077709	1	0.51247	1	0.18596	1	0.39357	1
del_11p15.5	114 (31%)	252	0.01985	1	0.04795	1	0.62141	1	0.71402	1	0.59544	1	0.16772	1	0.47944	1	0.25023	1	0.02945	1	0.33846	1
del_11q23.3	202 (55%)	164	9.9999e-06	0.0055	0.30746	1	0.90236	1	0.26369	1	0.12244	1	0.39791	1	0.44315	1	0.03376	1	0.0098599	1	0.085639	1
del_12q23.3	92 (25%)	274	0.01302	1	0.02833	1	0.96561	1	0.81825	1	0.4902	1	0.40423	1	0.29943	1	0.2429	1	0.46859	1	0.45582	1
del_13q34	85 (23%)	281	0.95106	1	0.02045	1	0.065629	1	0.74383	1	0.77371	1	0.49831	1	0.64892	1	0.099009	1	0.29345	1	0.69766	1
del_14q23.3	120 (33%)	246	9.9999e-06	0.0055	0.90037	1	0.55143	1	0.24623	1	0.0067199	1	0.03605	1	0.00056999	0.291	0.17928	1	0.11336	1	0.03932	1
del_14q32.31	117 (32%)	249	9.9999e-06	0.0055	0.77448	1	0.58946	1	0.1872	1	0.00476	1	0.04313	1	0.00419	1	0.1869	1	0.42398	1	0.18583	1
del_15q13.3	84 (23%)	282	0.04884	1	0.0085999	1	0.091629	1	0.30779	1	0.47291	1	0.01161	1	0.65217	1	0.86923	1	0.01558	1	0.76164	1
del_15q21.1	91 (25%)	275	0.076749	1	0.10045	1	0.53867	1	0.33424	1	0.64574	1	0.059289	1	0.86138	1	0.51895	1	0.11647	1	0.84861	1
del_16p13.3	62 (17%)	304	0.55892	1	0.097549	1	0.01231	1	0.3383	1	0.15814	1	0.91902	1	0.36643	1	0.33317	1	0.04514	1	0.089169	1
del_16q12.1	117 (32%)	249	0.26285	1	0.34296	1	0.02058	1	0.68105	1	0.01797	1	0.49638	1	0.18556	1	0.02168	1	0.26358	1	0.059689	1
del_16q24.3	133 (36%)	233	0.11039	1	0.66965	1	0.14429	1	0.90777	1	0.0059899	1	0.10648	1	0.084059	1	0.090759	1	0.01342	1	0.04021	1
del_17p13.3	135 (37%)	231	0.25266	1	0.00036	0.185	0.36418	1	0.63651	1	0.084419	1	0.23085	1	0.84841	1	0.36056	1	0.3848	1	0.21642	1
del_19p13.3	104 (28%)	262	0.02041	1	0.6458	1	0.00264	1	0.062559	1	0.00044	0.226	0.20603	1	0.78704	1	0.099199	1	0.18507	1	0.46159	1
del_xp21.1	87 (24%)	279	0.12224	1	9.9999e-06	0.0055	0.04609	1	0.10907	1	0.0053499	1	0.00086999	0.439	0.00070999	0.361	0.0477	1	0.00137	0.686	0.23992	1