Clinical Features CN_CNMF METHLYATION_CNMF MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q amp_1q21.2 69 (46%) 81 0.077789 1 0.71814 1 0.87 1 0.00084999 0.274 0.0178 1 0.44547 1 0.67305 1 0.19377 1 amp_2p24.1 62 (41%) 88 0.00407 1 0.00086999 0.279 0.0191 1 0.04411 1 0.18771 1 0.18966 1 0.20192 1 0.31631 1 amp_3q27.3 49 (33%) 101 0.077649 1 0.1021 1 0.00254 0.772 0.0077099 1 0.15179 1 0.18313 1 0.2591 1 0.23299 1 amp_4q12 20 (13%) 130 0.0084899 1 0.6606 1 0.39276 1 0.39361 1 0.86277 1 0.68989 1 0.12854 1 0.42876 1 amp_7p22.1 126 (84%) 24 0.086309 1 0.077939 1 0.02892 1 0.10312 1 0.04203 1 0.03616 1 0.19062 1 0.17679 1 amp_7q11.22 120 (80%) 30 0.00059999 0.196 0.0393 1 5e-05 0.0172 0.00229 0.701 0.01595 1 0.00368 1 0.01526 1 0.04675 1 amp_8q11.23 122 (81%) 28 4e-05 0.0139 0.0096599 1 9.9999e-06 0.00364 4e-05 0.0139 0.0126 1 0.02609 1 0.02387 1 0.082869 1 amp_8q23.3 108 (72%) 42 0.18356 1 0.00328 0.977 0.00035 0.116 0.00057999 0.19 0.0060299 1 0.02081 1 0.03544 1 0.14283 1 amp_12p13.33 145 (97%) 5 0.053019 1 0.1019 1 0.082559 1 0.68364 1 NA NA NA NA NA NA NA NA amp_12p12.1 147 (98%) 3 0.054899 1 0.10908 1 0.44385 1 0.55817 1 NA NA NA NA NA NA NA NA amp_12p11.21 144 (96%) 6 0.10812 1 0.03913 1 0.03602 1 0.49703 1 0.11 1 0.46866 1 0.18818 1 0.23628 1 amp_12q15 100 (67%) 50 0.52671 1 0.93044 1 0.81306 1 0.73394 1 0.32535 1 0.56398 1 0.83749 1 0.62779 1 amp_16q21 21 (14%) 129 7.9999e-05 0.0272 0.37286 1 0.00282 0.854 0.0075999 1 0.03458 1 0.00285 0.861 0.0011 0.351 0.04067 1 amp_20q11.21 51 (34%) 99 0.0048 1 0.00292 0.879 0.00301 0.9 0.03425 1 0.01207 1 0.04866 1 0.03041 1 0.02787 1 amp_22q11.21 57 (38%) 93 9.9999e-06 0.00364 0.0071899 1 0.00013 0.0441 9.9999e-06 0.00364 0.070179 1 0.23625 1 0.33105 1 0.04433 1 del_1p36.31 34 (23%) 116 0.28183 1 0.73281 1 0.00228 0.7 0.050749 1 0.11451 1 0.077769 1 0.12746 1 0.32972 1 del_1p31.1 27 (18%) 123 0.0070899 1 0.60072 1 0.24686 1 0.72317 1 0.39564 1 0.41977 1 0.49839 1 0.86649 1 del_1q42.12 9 (6%) 141 0.03859 1 0.51989 1 0.56247 1 0.19526 1 0.13343 1 0.18772 1 0.11409 1 0.060529 1 del_2q37.3 15 (10%) 135 0.45675 1 0.04077 1 0.057609 1 0.17286 1 0.67582 1 0.02831 1 0.11654 1 0.21464 1 del_3p26.2 41 (27%) 109 0.76015 1 0.02074 1 0.00133 0.416 0.00382 1 0.04968 1 0.074279 1 0.090739 1 0.0391 1 del_4q22.2 110 (73%) 40 0.02109 1 0.03211 1 0.0089699 1 0.00144 0.448 0.11611 1 0.10773 1 0.6236 1 0.50574 1 del_5p15.2 101 (67%) 49 0.1873 1 0.48859 1 0.21371 1 0.45675 1 0.68514 1 0.22242 1 0.34034 1 0.36841 1 del_5p14.3 103 (69%) 47 0.26439 1 0.31834 1 0.17979 1 0.29395 1 0.52848 1 0.12268 1 0.23694 1 0.30377 1 del_5q12.1 105 (70%) 45 0.089549 1 0.10408 1 0.03017 1 0.0074499 1 0.50096 1 0.04891 1 0.10007 1 0.1546 1 del_6p22.3 24 (16%) 126 6.9999e-05 0.024 0.01568 1 0.00386 1 0.01265 1 0.32219 1 0.077719 1 0.11616 1 0.22402 1 del_6q26 26 (17%) 124 0.03239 1 0.00074999 0.242 0.0059199 1 0.00135 0.421 0.46846 1 0.28968 1 0.2464 1 0.45882 1 del_7q11.22 4 (3%) 146 0.3149 1 0.0072199 1 0.0091599 1 0.03013 1 NA NA NA NA NA NA NA NA del_7q36.1 15 (10%) 135 0.050859 1 0.88916 1 0.20071 1 0.0098899 1 0.45505 1 0.72377 1 0.083739 1 0.18012 1 del_9p24.3 70 (47%) 80 0.090929 1 0.89625 1 1 1 0.80542 1 0.28353 1 0.76774 1 0.32025 1 0.37408 1 del_9p23 66 (44%) 84 0.03828 1 0.91491 1 0.90826 1 0.52254 1 0.32488 1 0.80445 1 0.29279 1 0.41028 1 del_9q33.3 60 (40%) 90 0.00037 0.122 0.39364 1 0.1179 1 0.01559 1 0.31964 1 0.00252 0.769 0.0262 1 0.053799 1 del_9q34.2 60 (40%) 90 0.00029 0.0969 0.2765 1 0.095419 1 0.00396 1 0.50935 1 0.01251 1 0.075369 1 0.18187 1 del_10p15.3 84 (56%) 66 0.00124 0.391 0.00036 0.119 2e-04 0.0674 0.00113 0.359 0.89976 1 0.059579 1 0.23409 1 0.2788 1 del_10q23.1 71 (47%) 79 0.0059599 1 9.9999e-06 0.00364 4e-05 0.0139 0.00022 0.0737 0.35735 1 0.04875 1 0.083449 1 0.03634 1 del_10q26.3 76 (51%) 74 0.00047 0.154 9.9999e-06 0.00364 9.9999e-06 0.00364 0.00015 0.0507 0.58788 1 0.03471 1 0.03837 1 0.01114 1 del_11p15.5 94 (63%) 56 0.02506 1 0.2562 1 0.003 0.9 0.00402 1 2e-04 0.0674 0.00037 0.122 0.00125 0.392 0.01631 1 del_11p12 99 (66%) 51 0.055579 1 0.11079 1 0.00163 0.504 0.0052299 1 0.00338 1 0.00373 1 0.02961 1 0.04832 1 del_11q12.3 114 (76%) 36 9.9999e-06 0.00364 0.18584 1 6.9999e-05 0.024 9.9999e-06 0.00364 3e-05 0.0104 0.00029 0.0969 0.0074799 1 0.0072799 1 del_11q24.2 122 (81%) 28 6.9999e-05 0.024 0.72546 1 0.0089699 1 0.00067999 0.22 0.00093999 0.301 0.03791 1 0.01901 1 0.04311 1 del_13q34 113 (75%) 37 0.04409 1 0.55383 1 0.082759 1 0.00191 0.588 0.41793 1 0.2765 1 0.00349 1 0.02738 1 del_16q23.1 66 (44%) 84 0.00118 0.373 0.23381 1 0.35694 1 0.39312 1 0.292 1 0.4372 1 0.16199 1 0.25147 1 del_18p11.32 118 (79%) 32 0.69895 1 0.13229 1 0.050279 1 0.2466 1 0.12434 1 0.098049 1 0.084369 1 0.10795 1 del_18q22.2 125 (83%) 25 0.058619 1 0.1426 1 0.10866 1 0.13277 1 0.15514 1 0.19999 1 0.02066 1 0.0059599 1 del_19q13.41 58 (39%) 92 9.9999e-06 0.00364 9.9999e-06 0.00364 9.9999e-06 0.00364 9.9999e-06 0.00364 9.9999e-06 0.00364 9.9999e-06 0.00364 9.9999e-06 0.00364 9.9999e-06 0.00364 del_20p12.1 29 (19%) 121 0.33501 1 0.33636 1 0.30967 1 0.094999 1 0.49233 1 0.18688 1 0.1113 1 0.074139 1 del_xp21.1 28 (19%) 122 0.058499 1 0.00066999 0.218 0.04529 1 0.052349 1 0.35686 1 0.24463 1 0.082019 1 0.15759 1 del_xq27.3 30 (20%) 120 0.00113 0.359 0.00157 0.487 0.094169 1 0.062659 1 0.5913 1 0.38306 1 0.10099 1 0.60419 1