		Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q21.2	69 (46%)	81	0.077789	1	0.71814	1	0.87	1	0.00084999	0.274	0.0178	1	0.44547	1	0.67305	1	0.19377	1
amp_2p24.1	62 (41%)	88	0.00407	1	0.00086999	0.279	0.0191	1	0.04411	1	0.18771	1	0.18966	1	0.20192	1	0.31631	1
amp_3q27.3	49 (33%)	101	0.077649	1	0.1021	1	0.00254	0.772	0.0077099	1	0.15179	1	0.18313	1	0.2591	1	0.23299	1
amp_4q12	20 (13%)	130	0.0084899	1	0.6606	1	0.39276	1	0.39361	1	0.86277	1	0.68989	1	0.12854	1	0.42876	1
amp_7p22.1	126 (84%)	24	0.086309	1	0.077939	1	0.02892	1	0.10312	1	0.04203	1	0.03616	1	0.19062	1	0.17679	1
amp_7q11.22	120 (80%)	30	0.00059999	0.196	0.0393	1	5e-05	0.0172	0.00229	0.701	0.01595	1	0.00368	1	0.01526	1	0.04675	1
amp_8q11.23	122 (81%)	28	4e-05	0.0139	0.0096599	1	9.9999e-06	0.00364	4e-05	0.0139	0.0126	1	0.02609	1	0.02387	1	0.082869	1
amp_8q23.3	108 (72%)	42	0.18356	1	0.00328	0.977	0.00035	0.116	0.00057999	0.19	0.0060299	1	0.02081	1	0.03544	1	0.14283	1
amp_12p13.33	145 (97%)	5	0.053019	1	0.1019	1	0.082559	1	0.68364	1	NA	NA	NA	NA	NA	NA	NA	NA
amp_12p12.1	147 (98%)	3	0.054899	1	0.10908	1	0.44385	1	0.55817	1	NA	NA	NA	NA	NA	NA	NA	NA
amp_12p11.21	144 (96%)	6	0.10812	1	0.03913	1	0.03602	1	0.49703	1	0.11	1	0.46866	1	0.18818	1	0.23628	1
amp_12q15	100 (67%)	50	0.52671	1	0.93044	1	0.81306	1	0.73394	1	0.32535	1	0.56398	1	0.83749	1	0.62779	1
amp_16q21	21 (14%)	129	7.9999e-05	0.0272	0.37286	1	0.00282	0.854	0.0075999	1	0.03458	1	0.00285	0.861	0.0011	0.351	0.04067	1
amp_20q11.21	51 (34%)	99	0.0048	1	0.00292	0.879	0.00301	0.9	0.03425	1	0.01207	1	0.04866	1	0.03041	1	0.02787	1
amp_22q11.21	57 (38%)	93	9.9999e-06	0.00364	0.0071899	1	0.00013	0.0441	9.9999e-06	0.00364	0.070179	1	0.23625	1	0.33105	1	0.04433	1
del_1p36.31	34 (23%)	116	0.28183	1	0.73281	1	0.00228	0.7	0.050749	1	0.11451	1	0.077769	1	0.12746	1	0.32972	1
del_1p31.1	27 (18%)	123	0.0070899	1	0.60072	1	0.24686	1	0.72317	1	0.39564	1	0.41977	1	0.49839	1	0.86649	1
del_1q42.12	9 (6%)	141	0.03859	1	0.51989	1	0.56247	1	0.19526	1	0.13343	1	0.18772	1	0.11409	1	0.060529	1
del_2q37.3	15 (10%)	135	0.45675	1	0.04077	1	0.057609	1	0.17286	1	0.67582	1	0.02831	1	0.11654	1	0.21464	1
del_3p26.2	41 (27%)	109	0.76015	1	0.02074	1	0.00133	0.416	0.00382	1	0.04968	1	0.074279	1	0.090739	1	0.0391	1
del_4q22.2	110 (73%)	40	0.02109	1	0.03211	1	0.0089699	1	0.00144	0.448	0.11611	1	0.10773	1	0.6236	1	0.50574	1
del_5p15.2	101 (67%)	49	0.1873	1	0.48859	1	0.21371	1	0.45675	1	0.68514	1	0.22242	1	0.34034	1	0.36841	1
del_5p14.3	103 (69%)	47	0.26439	1	0.31834	1	0.17979	1	0.29395	1	0.52848	1	0.12268	1	0.23694	1	0.30377	1
del_5q12.1	105 (70%)	45	0.089549	1	0.10408	1	0.03017	1	0.0074499	1	0.50096	1	0.04891	1	0.10007	1	0.1546	1
del_6p22.3	24 (16%)	126	6.9999e-05	0.024	0.01568	1	0.00386	1	0.01265	1	0.32219	1	0.077719	1	0.11616	1	0.22402	1
del_6q26	26 (17%)	124	0.03239	1	0.00074999	0.242	0.0059199	1	0.00135	0.421	0.46846	1	0.28968	1	0.2464	1	0.45882	1
del_7q11.22	4 (3%)	146	0.3149	1	0.0072199	1	0.0091599	1	0.03013	1	NA	NA	NA	NA	NA	NA	NA	NA
del_7q36.1	15 (10%)	135	0.050859	1	0.88916	1	0.20071	1	0.0098899	1	0.45505	1	0.72377	1	0.083739	1	0.18012	1
del_9p24.3	70 (47%)	80	0.090929	1	0.89625	1	1	1	0.80542	1	0.28353	1	0.76774	1	0.32025	1	0.37408	1
del_9p23	66 (44%)	84	0.03828	1	0.91491	1	0.90826	1	0.52254	1	0.32488	1	0.80445	1	0.29279	1	0.41028	1
del_9q33.3	60 (40%)	90	0.00037	0.122	0.39364	1	0.1179	1	0.01559	1	0.31964	1	0.00252	0.769	0.0262	1	0.053799	1
del_9q34.2	60 (40%)	90	0.00029	0.0969	0.2765	1	0.095419	1	0.00396	1	0.50935	1	0.01251	1	0.075369	1	0.18187	1
del_10p15.3	84 (56%)	66	0.00124	0.391	0.00036	0.119	2e-04	0.0674	0.00113	0.359	0.89976	1	0.059579	1	0.23409	1	0.2788	1
del_10q23.1	71 (47%)	79	0.0059599	1	9.9999e-06	0.00364	4e-05	0.0139	0.00022	0.0737	0.35735	1	0.04875	1	0.083449	1	0.03634	1
del_10q26.3	76 (51%)	74	0.00047	0.154	9.9999e-06	0.00364	9.9999e-06	0.00364	0.00015	0.0507	0.58788	1	0.03471	1	0.03837	1	0.01114	1
del_11p15.5	94 (63%)	56	0.02506	1	0.2562	1	0.003	0.9	0.00402	1	2e-04	0.0674	0.00037	0.122	0.00125	0.392	0.01631	1
del_11p12	99 (66%)	51	0.055579	1	0.11079	1	0.00163	0.504	0.0052299	1	0.00338	1	0.00373	1	0.02961	1	0.04832	1
del_11q12.3	114 (76%)	36	9.9999e-06	0.00364	0.18584	1	6.9999e-05	0.024	9.9999e-06	0.00364	3e-05	0.0104	0.00029	0.0969	0.0074799	1	0.0072799	1
del_11q24.2	122 (81%)	28	6.9999e-05	0.024	0.72546	1	0.0089699	1	0.00067999	0.22	0.00093999	0.301	0.03791	1	0.01901	1	0.04311	1
del_13q34	113 (75%)	37	0.04409	1	0.55383	1	0.082759	1	0.00191	0.588	0.41793	1	0.2765	1	0.00349	1	0.02738	1
del_16q23.1	66 (44%)	84	0.00118	0.373	0.23381	1	0.35694	1	0.39312	1	0.292	1	0.4372	1	0.16199	1	0.25147	1
del_18p11.32	118 (79%)	32	0.69895	1	0.13229	1	0.050279	1	0.2466	1	0.12434	1	0.098049	1	0.084369	1	0.10795	1
del_18q22.2	125 (83%)	25	0.058619	1	0.1426	1	0.10866	1	0.13277	1	0.15514	1	0.19999	1	0.02066	1	0.0059599	1
del_19q13.41	58 (39%)	92	9.9999e-06	0.00364	9.9999e-06	0.00364	9.9999e-06	0.00364	9.9999e-06	0.00364	9.9999e-06	0.00364	9.9999e-06	0.00364	9.9999e-06	0.00364	9.9999e-06	0.00364
del_20p12.1	29 (19%)	121	0.33501	1	0.33636	1	0.30967	1	0.094999	1	0.49233	1	0.18688	1	0.1113	1	0.074139	1
del_xp21.1	28 (19%)	122	0.058499	1	0.00066999	0.218	0.04529	1	0.052349	1	0.35686	1	0.24463	1	0.082019	1	0.15759	1
del_xq27.3	30 (20%)	120	0.00113	0.359	0.00157	0.487	0.094169	1	0.062659	1	0.5913	1	0.38306	1	0.10099	1	0.60419	1
