		Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	8 (7%)	115	0.00013	0.0428	0.02114	1	0.0067799	1	0.00254	0.668	0.02169	1	0.02147	1	0.00344	0.888	0.0066099	1
1q gain	22 (18%)	101	9.9999e-06	0.004	9.9999e-06	0.004	9.9999e-06	0.004	9.9999e-06	0.004	9.9999e-06	0.004	9.9999e-06	0.004	9.9999e-06	0.004	9.9999e-06	0.004
3q gain	5 (4%)	118	0.25991	1	0.13889	1	0.1776	1	0.04222	1	0.72567	1	0.0053799	1	0.35317	1	0.1713	1
5p gain	11 (9%)	112	9.9999e-06	0.004	2e-05	0.00706	0.00115	0.327	0.00108	0.308	0.00071999	0.211	0.01327	1	2e-05	0.00706	0.00184	0.502
5q gain	9 (7%)	114	9.9999e-06	0.004	2e-05	0.00706	0.0066699	1	0.00454	1	0.00341	0.883	0.01734	1	0.00019	0.0614	0.00296	0.77
7p gain	16 (13%)	107	9.9999e-06	0.004	9.9999e-06	0.004	9.9999e-06	0.004	9.9999e-06	0.004	9.9999e-06	0.004	0.00016	0.0522	9.9999e-06	0.004	2e-05	0.00706
7q gain	16 (13%)	107	9.9999e-06	0.004	9.9999e-06	0.004	9.9999e-06	0.004	9.9999e-06	0.004	2e-05	0.00706	0.00011	0.0364	9.9999e-06	0.004	4e-05	0.0136
8p gain	12 (10%)	111	0.00037	0.115	0.02153	1	0.00041	0.126	9.9999e-05	0.0332	0.00071999	0.211	0.00172	0.471	0.00023	0.0734	0.00037	0.115
8q gain	12 (10%)	111	0.00023	0.0734	0.02164	1	0.00035	0.11	0.00013	0.0428	0.00076999	0.223	0.00169	0.465	0.00019	0.0614	0.00051999	0.156
9p gain	11 (9%)	112	9.9999e-06	0.004	0.00016	0.0522	0.00038	0.117	0.00045	0.137	0.01001	1	0.0063999	1	0.00478	1	0.00107	0.306
9q gain	11 (9%)	112	9.9999e-06	0.004	0.00012	0.0396	0.00035	0.11	0.00044	0.135	0.01063	1	0.0059499	1	0.00491	1	0.00078999	0.228
12p gain	4 (3%)	119	0.02792	1	0.14895	1	0.00471	1	0.00272	0.71	0.17231	1	0.02731	1	0.04487	1	0.17033	1
12q gain	4 (3%)	119	0.02868	1	0.14583	1	0.00447	1	0.0027	0.707	0.17096	1	0.02684	1	0.0455	1	0.17102	1
14q gain	13 (11%)	110	9.9999e-06	0.004	2e-05	0.00706	9.9999e-06	0.004	4e-05	0.0136	0.00019	0.0614	5.9999e-05	0.0202	9.9999e-06	0.004	2e-05	0.00706
15q gain	12 (10%)	111	0.00017	0.0551	5.9999e-05	0.0202	0.0258	1	0.01599	1	0.01461	1	0.02067	1	0.00141	0.391	0.0053199	1
17q gain	7 (6%)	116	0.39405	1	0.22049	1	0.04814	1	0.0043	1	0.7704	1	0.068219	1	0.43924	1	0.40046	1
18p gain	3 (2%)	120	0.10183	1	0.17623	1	0.03288	1	0.03206	1	0.19725	1	0.28564	1	0.10428	1	0.50297	1
18q gain	3 (2%)	120	0.10393	1	0.1775	1	0.03314	1	0.03191	1	0.1959	1	0.2879	1	0.10537	1	0.50108	1
19p gain	3 (2%)	120	0.02379	1	0.17544	1	0.30349	1	0.3361	1	0.19763	1	0.61121	1	0.10599	1	0.30222	1
19q gain	3 (2%)	120	0.02484	1	0.17739	1	0.30446	1	0.3381	1	0.19638	1	0.60898	1	0.10479	1	0.30237	1
20p gain	10 (8%)	113	0.00057999	0.173	0.02427	1	0.00088999	0.256	3e-04	0.0942	0.053159	1	0.01069	1	0.00054999	0.164	0.053999	1
20q gain	10 (8%)	113	0.00063999	0.189	0.02462	1	0.00099999	0.287	0.00028	0.0885	0.053139	1	0.01087	1	0.00049	0.147	0.054699	1
21q gain	3 (2%)	120	0.27641	1	0.34858	1	0.48578	1	0.19935	1	0.64871	1	0.34106	1	0.73996	1	0.61992	1
22q gain	5 (4%)	118	0.03547	1	0.03188	1	0.32158	1	0.23647	1	0.32328	1	0.61012	1	0.22336	1	0.68339	1
xq gain	5 (4%)	118	0.00124	0.347	0.0075899	1	0.050459	1	0.068159	1	0.14728	1	0.27148	1	0.01172	1	0.10376	1
1p loss	4 (3%)	119	0.0053199	1	0.00243	0.642	0.055549	1	0.12575	1	0.17307	1	0.52597	1	0.0449	1	0.3011	1
3p loss	12 (10%)	111	9.9999e-06	0.004	9.9999e-06	0.004	0.00057999	0.173	0.00038	0.117	0.00072999	0.212	0.0044	1	9.9999e-06	0.004	0.00045	0.137
3q loss	7 (6%)	116	0.00067999	0.2	0.00022	0.0704	0.02433	1	0.02209	1	0.03257	1	0.085069	1	0.00218	0.582	0.0090199	1
4p loss	5 (4%)	118	0.0073699	1	0.01156	1	0.04805	1	0.066149	1	0.32484	1	0.38348	1	0.052049	1	0.26398	1
4q loss	4 (3%)	119	0.02838	1	0.060959	1	0.13589	1	0.14548	1	0.43468	1	0.1141	1	0.10292	1	0.086379	1
6p loss	20 (16%)	103	9.9999e-06	0.004	9.9999e-06	0.004	9.9999e-06	0.004	9.9999e-06	0.004	9.9999e-06	0.004	4e-05	0.0136	9.9999e-06	0.004	9.9999e-06	0.004
6q loss	19 (15%)	104	9.9999e-06	0.004	9.9999e-06	0.004	9.9999e-06	0.004	2e-05	0.00706	2e-05	0.00706	0.00028	0.0885	9.9999e-06	0.004	6.9999e-05	0.0234
9p loss	4 (3%)	119	0.25013	1	0.1065	1	0.02138	1	0.00385	0.986	1	1	0.059499	1	1	1	0.33213	1
10p loss	3 (2%)	120	0.59966	1	0.34595	1	0.02137	1	0.02433	1	1	1	0.01531	1	0.74059	1	0.61916	1
11p loss	9 (7%)	114	9.9999e-06	0.004	9.9999e-06	0.004	0.0070199	1	0.00475	1	0.0084099	1	0.051379	1	0.00014	0.0458	0.0083099	1
11q loss	7 (6%)	116	4e-05	0.0136	4e-05	0.0136	0.02464	1	0.0080499	1	0.03382	1	0.11064	1	0.00222	0.591	0.0085199	1
12p loss	8 (7%)	115	0.00394	1	8.9999e-05	0.03	0.0068299	1	0.0083399	1	0.02107	1	0.052919	1	0.00357	0.917	0.01927	1
12q loss	7 (6%)	116	0.00198	0.535	9.9999e-06	0.004	0.0077099	1	0.0087799	1	0.03313	1	0.12163	1	0.00197	0.534	0.03571	1
13q loss	14 (11%)	109	2e-05	0.00706	0.0058599	1	0.066199	1	0.04053	1	0.37109	1	0.577	1	0.059809	1	0.35025	1
16p loss	5 (4%)	118	0.12751	1	0.20151	1	0.16648	1	0.11992	1	0.32409	1	0.57928	1	0.22378	1	0.30583	1
16q loss	13 (11%)	110	0.058289	1	0.00485	1	2e-05	0.00706	9.9999e-06	0.004	0.059499	1	2e-05	0.00706	0.00126	0.35	0.00066999	0.198
17p loss	14 (11%)	109	0.02351	1	0.00119	0.337	0.01566	1	0.00125	0.349	0.37183	1	0.00209	0.562	0.02793	1	0.061629	1
17q loss	6 (5%)	117	0.01022	1	0.0086099	1	0.31617	1	0.15473	1	0.27007	1	0.23608	1	0.099299	1	0.43726	1
18p loss	7 (6%)	116	0.00229	0.607	0.0085399	1	0.02415	1	0.02179	1	0.01361	1	0.095809	1	0.00192	0.522	0.04257	1
18q loss	7 (6%)	116	0.00168	0.464	0.0081399	1	0.0254	1	0.0216	1	0.01403	1	0.095339	1	0.00217	0.582	0.04312	1
19p loss	3 (2%)	120	0.10308	1	0.34984	1	0.00121	0.341	0.00044	0.135	0.19949	1	0.0096199	1	0.1063	1	0.059969	1
19q loss	3 (2%)	120	0.103	1	0.34686	1	0.00123	0.346	0.00045	0.137	0.19793	1	0.0096299	1	0.10554	1	0.059419	1
21q loss	9 (7%)	114	9.9999e-06	0.004	9.9999e-06	0.004	0.0051699	1	0.00461	1	0.0093799	1	0.051729	1	0.00023	0.0734	0.0083799	1
22q loss	13 (11%)	110	9.9999e-06	0.004	0.11427	1	0.085989	1	0.03754	1	0.11124	1	0.33406	1	0.054629	1	0.33259	1
xq loss	4 (3%)	119	0.02731	1	0.03642	1	0.056419	1	0.12543	1	0.02602	1	0.25259	1	0.04578	1	0.30118	1
