Clinical Features CN_CNMF METHLYATION_CNMF MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 8 (7%) 115 0.00013 0.0428 0.02114 1 0.0067799 1 0.00254 0.668 0.02169 1 0.02147 1 0.00344 0.888 0.0066099 1 1q gain 22 (18%) 101 9.9999e-06 0.004 9.9999e-06 0.004 9.9999e-06 0.004 9.9999e-06 0.004 9.9999e-06 0.004 9.9999e-06 0.004 9.9999e-06 0.004 9.9999e-06 0.004 3q gain 5 (4%) 118 0.25991 1 0.13889 1 0.1776 1 0.04222 1 0.72567 1 0.0053799 1 0.35317 1 0.1713 1 5p gain 11 (9%) 112 9.9999e-06 0.004 2e-05 0.00706 0.00115 0.327 0.00108 0.308 0.00071999 0.211 0.01327 1 2e-05 0.00706 0.00184 0.502 5q gain 9 (7%) 114 9.9999e-06 0.004 2e-05 0.00706 0.0066699 1 0.00454 1 0.00341 0.883 0.01734 1 0.00019 0.0614 0.00296 0.77 7p gain 16 (13%) 107 9.9999e-06 0.004 9.9999e-06 0.004 9.9999e-06 0.004 9.9999e-06 0.004 9.9999e-06 0.004 0.00016 0.0522 9.9999e-06 0.004 2e-05 0.00706 7q gain 16 (13%) 107 9.9999e-06 0.004 9.9999e-06 0.004 9.9999e-06 0.004 9.9999e-06 0.004 2e-05 0.00706 0.00011 0.0364 9.9999e-06 0.004 4e-05 0.0136 8p gain 12 (10%) 111 0.00037 0.115 0.02153 1 0.00041 0.126 9.9999e-05 0.0332 0.00071999 0.211 0.00172 0.471 0.00023 0.0734 0.00037 0.115 8q gain 12 (10%) 111 0.00023 0.0734 0.02164 1 0.00035 0.11 0.00013 0.0428 0.00076999 0.223 0.00169 0.465 0.00019 0.0614 0.00051999 0.156 9p gain 11 (9%) 112 9.9999e-06 0.004 0.00016 0.0522 0.00038 0.117 0.00045 0.137 0.01001 1 0.0063999 1 0.00478 1 0.00107 0.306 9q gain 11 (9%) 112 9.9999e-06 0.004 0.00012 0.0396 0.00035 0.11 0.00044 0.135 0.01063 1 0.0059499 1 0.00491 1 0.00078999 0.228 12p gain 4 (3%) 119 0.02792 1 0.14895 1 0.00471 1 0.00272 0.71 0.17231 1 0.02731 1 0.04487 1 0.17033 1 12q gain 4 (3%) 119 0.02868 1 0.14583 1 0.00447 1 0.0027 0.707 0.17096 1 0.02684 1 0.0455 1 0.17102 1 14q gain 13 (11%) 110 9.9999e-06 0.004 2e-05 0.00706 9.9999e-06 0.004 4e-05 0.0136 0.00019 0.0614 5.9999e-05 0.0202 9.9999e-06 0.004 2e-05 0.00706 15q gain 12 (10%) 111 0.00017 0.0551 5.9999e-05 0.0202 0.0258 1 0.01599 1 0.01461 1 0.02067 1 0.00141 0.391 0.0053199 1 17q gain 7 (6%) 116 0.39405 1 0.22049 1 0.04814 1 0.0043 1 0.7704 1 0.068219 1 0.43924 1 0.40046 1 18p gain 3 (2%) 120 0.10183 1 0.17623 1 0.03288 1 0.03206 1 0.19725 1 0.28564 1 0.10428 1 0.50297 1 18q gain 3 (2%) 120 0.10393 1 0.1775 1 0.03314 1 0.03191 1 0.1959 1 0.2879 1 0.10537 1 0.50108 1 19p gain 3 (2%) 120 0.02379 1 0.17544 1 0.30349 1 0.3361 1 0.19763 1 0.61121 1 0.10599 1 0.30222 1 19q gain 3 (2%) 120 0.02484 1 0.17739 1 0.30446 1 0.3381 1 0.19638 1 0.60898 1 0.10479 1 0.30237 1 20p gain 10 (8%) 113 0.00057999 0.173 0.02427 1 0.00088999 0.256 3e-04 0.0942 0.053159 1 0.01069 1 0.00054999 0.164 0.053999 1 20q gain 10 (8%) 113 0.00063999 0.189 0.02462 1 0.00099999 0.287 0.00028 0.0885 0.053139 1 0.01087 1 0.00049 0.147 0.054699 1 21q gain 3 (2%) 120 0.27641 1 0.34858 1 0.48578 1 0.19935 1 0.64871 1 0.34106 1 0.73996 1 0.61992 1 22q gain 5 (4%) 118 0.03547 1 0.03188 1 0.32158 1 0.23647 1 0.32328 1 0.61012 1 0.22336 1 0.68339 1 xq gain 5 (4%) 118 0.00124 0.347 0.0075899 1 0.050459 1 0.068159 1 0.14728 1 0.27148 1 0.01172 1 0.10376 1 1p loss 4 (3%) 119 0.0053199 1 0.00243 0.642 0.055549 1 0.12575 1 0.17307 1 0.52597 1 0.0449 1 0.3011 1 3p loss 12 (10%) 111 9.9999e-06 0.004 9.9999e-06 0.004 0.00057999 0.173 0.00038 0.117 0.00072999 0.212 0.0044 1 9.9999e-06 0.004 0.00045 0.137 3q loss 7 (6%) 116 0.00067999 0.2 0.00022 0.0704 0.02433 1 0.02209 1 0.03257 1 0.085069 1 0.00218 0.582 0.0090199 1 4p loss 5 (4%) 118 0.0073699 1 0.01156 1 0.04805 1 0.066149 1 0.32484 1 0.38348 1 0.052049 1 0.26398 1 4q loss 4 (3%) 119 0.02838 1 0.060959 1 0.13589 1 0.14548 1 0.43468 1 0.1141 1 0.10292 1 0.086379 1 6p loss 20 (16%) 103 9.9999e-06 0.004 9.9999e-06 0.004 9.9999e-06 0.004 9.9999e-06 0.004 9.9999e-06 0.004 4e-05 0.0136 9.9999e-06 0.004 9.9999e-06 0.004 6q loss 19 (15%) 104 9.9999e-06 0.004 9.9999e-06 0.004 9.9999e-06 0.004 2e-05 0.00706 2e-05 0.00706 0.00028 0.0885 9.9999e-06 0.004 6.9999e-05 0.0234 9p loss 4 (3%) 119 0.25013 1 0.1065 1 0.02138 1 0.00385 0.986 1 1 0.059499 1 1 1 0.33213 1 10p loss 3 (2%) 120 0.59966 1 0.34595 1 0.02137 1 0.02433 1 1 1 0.01531 1 0.74059 1 0.61916 1 11p loss 9 (7%) 114 9.9999e-06 0.004 9.9999e-06 0.004 0.0070199 1 0.00475 1 0.0084099 1 0.051379 1 0.00014 0.0458 0.0083099 1 11q loss 7 (6%) 116 4e-05 0.0136 4e-05 0.0136 0.02464 1 0.0080499 1 0.03382 1 0.11064 1 0.00222 0.591 0.0085199 1 12p loss 8 (7%) 115 0.00394 1 8.9999e-05 0.03 0.0068299 1 0.0083399 1 0.02107 1 0.052919 1 0.00357 0.917 0.01927 1 12q loss 7 (6%) 116 0.00198 0.535 9.9999e-06 0.004 0.0077099 1 0.0087799 1 0.03313 1 0.12163 1 0.00197 0.534 0.03571 1 13q loss 14 (11%) 109 2e-05 0.00706 0.0058599 1 0.066199 1 0.04053 1 0.37109 1 0.577 1 0.059809 1 0.35025 1 16p loss 5 (4%) 118 0.12751 1 0.20151 1 0.16648 1 0.11992 1 0.32409 1 0.57928 1 0.22378 1 0.30583 1 16q loss 13 (11%) 110 0.058289 1 0.00485 1 2e-05 0.00706 9.9999e-06 0.004 0.059499 1 2e-05 0.00706 0.00126 0.35 0.00066999 0.198 17p loss 14 (11%) 109 0.02351 1 0.00119 0.337 0.01566 1 0.00125 0.349 0.37183 1 0.00209 0.562 0.02793 1 0.061629 1 17q loss 6 (5%) 117 0.01022 1 0.0086099 1 0.31617 1 0.15473 1 0.27007 1 0.23608 1 0.099299 1 0.43726 1 18p loss 7 (6%) 116 0.00229 0.607 0.0085399 1 0.02415 1 0.02179 1 0.01361 1 0.095809 1 0.00192 0.522 0.04257 1 18q loss 7 (6%) 116 0.00168 0.464 0.0081399 1 0.0254 1 0.0216 1 0.01403 1 0.095339 1 0.00217 0.582 0.04312 1 19p loss 3 (2%) 120 0.10308 1 0.34984 1 0.00121 0.341 0.00044 0.135 0.19949 1 0.0096199 1 0.1063 1 0.059969 1 19q loss 3 (2%) 120 0.103 1 0.34686 1 0.00123 0.346 0.00045 0.137 0.19793 1 0.0096299 1 0.10554 1 0.059419 1 21q loss 9 (7%) 114 9.9999e-06 0.004 9.9999e-06 0.004 0.0051699 1 0.00461 1 0.0093799 1 0.051729 1 0.00023 0.0734 0.0083799 1 22q loss 13 (11%) 110 9.9999e-06 0.004 0.11427 1 0.085989 1 0.03754 1 0.11124 1 0.33406 1 0.054629 1 0.33259 1 xq loss 4 (3%) 119 0.02731 1 0.03642 1 0.056419 1 0.12543 1 0.02602 1 0.25259 1 0.04578 1 0.30118 1